RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4749
(370 letters)
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel. This family includes the two
membrane helix type ion channels found in bacteria.
Length = 74
Score = 48.7 bits (117), Expect = 8e-08
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 100 IVASIVIAGCASFVYVPYEN--WTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSF 157
I+ +V+ + + E W +L+++YF FV+ +TIG+GD V P +
Sbjct: 1 ILLLLVLIFGTVYYSLEEEGWGWDFLDALYFSFVTLTTIGYGDIV-------PLTDAGRL 53
Query: 158 WNYIFLILGCSCIYSLFNV 176
+ I++++G V
Sbjct: 54 FTIIYILIGIPLFLLFLAV 72
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLF 49
+GYG P T G+LF I+Y +G +LF +
Sbjct: 39 IGYGDIVPLTDAGRLFTIIYILIGIPLFLLFLAVL 73
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family contains
Sodium, Potassium, Calcium ion channels. This family is
6 transmembrane helices in which the last two helices
flank a loop which determines ion selectivity. In some
sub-families (e.g. Na channels) the domain is repeated
four times, whereas in others (e.g. K channels) the
protein forms as a tetramer in the membrane. A bacterial
structure of the protein is known for the last two
helices but is not the Pfam family due to it lacking the
first four helices.
Length = 194
Score = 36.1 bits (84), Expect = 0.015
Identities = 32/169 (18%), Positives = 60/169 (35%), Gaps = 35/169 (20%)
Query: 24 TTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQDLSEDERNE 83
P + +I++ SG + L R++ LL + R +R LL+S
Sbjct: 40 VLPSLVSLILFLLGEDSGLLRVLRLL--RLLRLLRLLRRFPGLRTLLQSLGRS------- 90
Query: 84 SLEEWKPSVYWVMLCLIVASIV-IAGCASFVYVPYENW--------------TYLESIYF 128
K + ++L L++ I I G F + +Y E++ +
Sbjct: 91 ----LKSLLNLLLLLLLLLFIFAIIGVQLFGGELDKCCDKNENPINGNSNFDSYGEALLW 146
Query: 129 CFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCS-CIYSLFNV 176
F + +T G+GD + Y + IF ++ L N+
Sbjct: 147 LFRTLTTEGWGD------VMYDTLVPGTVLGKIFFVIFIILGGVLLLNL 189
>gnl|CDD|226750 COG4300, CadD, Predicted permease, cadmium resistance protein
[Inorganic ion transport and metabolism].
Length = 205
Score = 33.9 bits (78), Expect = 0.081
Identities = 37/155 (23%), Positives = 53/155 (34%), Gaps = 24/155 (15%)
Query: 35 GFLGCSGGILFFNLFL-----ERIITLLAYILRALYIRKLLRSGQDLSEDERNESLEEWK 89
G + L F L E I+ LL I L I+ L+ D E+E E L K
Sbjct: 46 GSVILILASLLFAFVLNFVPEEWILGLLGLIPIYLGIKVLILGDDD-GEEEAKEELAFKK 104
Query: 90 PSVYWVMLCLIVASIVIAGCAS---FVYVPY---ENWTYLESIYFCFVSFSTIGF----G 139
L VA + A C + V+VPY N L + V I
Sbjct: 105 NKN----LVGTVAIVTFASCGADNIGVFVPYFATLNLANL--LVALLVFLVMIYILVFLA 158
Query: 140 DYVSAQAIDYPNSSLYSFW--NYIFLILGCSCIYS 172
++ YS W ++++ LG +Y
Sbjct: 159 QKLAQIPPIGEVLEKYSRWIVAFVYIGLGLFILYE 193
>gnl|CDD|227501 COG5174, TFA2, Transcription initiation factor IIE, beta subunit
[Transcription].
Length = 285
Score = 31.5 bits (71), Expect = 0.62
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 199 KPPDKTGRVLRRHSIRVQRERERRRRSSIT 228
KP +R +I++++++ RR+ IT
Sbjct: 241 KPTSVDPNTKKRPTIKIKKKKRSRRKGKIT 270
>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is
a conserved membrane protein. The yfhO gene is
transcribed in Difco sporulation medium and the
transcription is affected by the YvrGHb two-component
system. Some members of this family have been annotated
as glycosyl transferases of the PMT family.
Length = 835
Score = 31.8 bits (73), Expect = 0.67
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 12/97 (12%)
Query: 85 LEEWKPSVYWVMLCLIVASIVIAGCA--SFVYVPYENWTYLESIYFCFVSFSTIGFGDYV 142
L++ K + + L+V ++ S Y L ++ F + +
Sbjct: 360 LKQLKKLKILISILLLVLLFILVFLLNLSKHYSFLTQTNLLLTLLFLLLYLLLLLL---- 415
Query: 143 SAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSI 179
+ + I L+L L S+
Sbjct: 416 ------FLKKQIRKKLVIILLLLVVVLELGLNAYLSL 446
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 31.4 bits (71), Expect = 0.85
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 122 YLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVI 181
Y+ +IY+ + +T+G+GD + I+ Y +N LG + Y + N+T++V+
Sbjct: 251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFN-----LGLTA-YLIGNMTNLVV 304
Query: 182 K------QFLNWLIYEMDMFCCRK--PPDKTGRVLRRHSIRVQRERERRRRSSITLPKTI 233
+ +F N I F R PP ++L +R + E +++ LPK+I
Sbjct: 305 EGTRRTMEFRN-SIEAASNFVGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSI 363
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the
SERT-like Na(+)- and Cl(-)-dependent monoamine
transporter subfamily; solute binding domain. SERT-like
Na(+)- and Cl(-)-dependent monoamine transporters,
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: the
norepinephrine transporter NET, the serotonin
transporter SERT , and the dopamine transporter DAT1.
These latter may play a role in diseases or disorders
including depression, anxiety disorders, and
attention-deficit hyperactivity disorder, and in the
control of human behavior and emotional states. They
belongs to the solute carrier 6 (SLC6) transporter
family. Members of this subgroup are uncharacterized.
Length = 552
Score = 31.3 bits (71), Expect = 0.94
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 15/106 (14%)
Query: 30 FVIVYGFLGCS-GGILFFNLFLERIIT----LLAYILRAL---YIRKLLRSGQDLSEDER 81
F V G C+ GGI FF+L L+R L+A + A+ +I L R QD+ E
Sbjct: 409 FYFVIGLAMCTQGGIYFFHL-LDRYAAGYSILIAVLFEAVAVSWIYGLDRFCQDIKE--- 464
Query: 82 NESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIY 127
+ ++P +YW + +A I + ++ + Y+ TY + Y
Sbjct: 465 ---MLGFRPGIYWKICWKFIAPIFLLFNITYGLINYQPLTYDDYTY 507
>gnl|CDD|129926 TIGR00846, caca2, calcium/proton exchanger. The Ca2+:Cation
Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA
family are found ubiquitously, having been identified in
animals, plants, yeast, archaea and widely divergent
bacteria.All of the characterized animal proteins
catalyze Ca2+:Na+ exchange although some also transport
K+. The NCX1 plasma membrane protein exchanges 3 Na+ for
1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+
antiport but may also catalyze Na+:H+ antiport. All
remaining well-characterized members of the family
catalyze Ca2+:H+ exchange.This model is generated from
the calcium ion/proton exchangers of the CacA family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 365
Score = 31.2 bits (71), Expect = 0.94
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 53 IITLLAYILRALYIRKLLRSGQDLSEDERNESLEEWKP--------SVYWVMLCLIVASI 104
I+ L+ Y L + L + + L E + + S + L+ A+I
Sbjct: 175 IVMLILYGA-FLVFQ--LVTHRQLFEPQEEADSDYDDEVHEEPTVISPWSAAAWLVGATI 231
Query: 105 VIAGCASFVYVPYEN 119
V+A A ++ E+
Sbjct: 232 VVALLAEYLVDTIES 246
>gnl|CDD|192487 pfam10225, DUF2215, Uncharacterized conserved protein (DUF2215).
This entry is the central 200 residues of a family of
proteins conserved from worms to humans. The function is
unknown.
Length = 248
Score = 30.8 bits (70), Expect = 1.0
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 18/103 (17%)
Query: 44 LFFNL---FLERIITLLAYILRALYIRKLLRSGQDLSEDERNESLEEWKPSVYWVMLCLI 100
L NL +E I +L Y+L + + + S D R+ +W ++ + L LI
Sbjct: 85 LSMNLQLILVEYAIYVLGYLLIVGAVSFFVCYKKGPSVDARSAQFVKW--TLQLIALTLI 142
Query: 101 ----------VASIVIAGCASFVYVPYENWTYLESIYFCFVSF 133
++++A F+ P ++L+ +Y +
Sbjct: 143 LQSSLDPLLATGALILALLTKFLLTPI---SWLKGLYRKYRRR 182
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may not be an
autonomously folding unit, but an integral part of the
helicase; 4 helicase superfamilies at present according
to the organization of their signature motifs; all
helicases share the ability to unwind nucleic acid
duplexes with a distinct directional polarity; they
utilize the free energy from nucleoside triphosphate
hydrolysis to fuel their translocation along DNA,
unwinding the duplex in the process.
Length = 131
Score = 29.5 bits (67), Expect = 1.1
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 28 KLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQDLSEDERNESLEE 87
L ++ L G +L F + + L + + L D S++ER E L++
Sbjct: 16 ALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHG--DGSQEEREEVLKD 73
Query: 88 WKPSVYWVMLCLIVASIVI 106
++ V++ V + I
Sbjct: 74 FREGEIVVLVATDVIARGI 92
>gnl|CDD|226082 COG3552, CoxE, Protein containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 395
Score = 30.5 bits (69), Expect = 1.3
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 22/65 (33%)
Query: 205 GRVLRRHSIRVQRERERRRRSS-----ITLPKTIR-----------------RERNRPLG 242
G LRR + R R RR R+S I L +T+R R R PL
Sbjct: 163 GEALRRLRAPLARRRSRRLRASRRRKRIDLRRTMRKSMSTGGEVILLVRRRPRRRKPPLV 222
Query: 243 RICDV 247
+CDV
Sbjct: 223 VLCDV 227
>gnl|CDD|161884 TIGR00445, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase.
Involved in peptidoglycan biosynthesis, the enzyme
catalyzes the first of the lipid cycle reactions. Also
known as Muramoyl-Pentapeptide Transferase (murX) [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 321
Score = 30.5 bits (69), Expect = 1.4
Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 32/142 (22%)
Query: 68 KLLRSGQDLSED--ERNESLEEWKPSVYWVM--LCLIVASIVIAGCASFVYVPYENWTYL 123
K L++GQ + D + + ++ P++ +M +IV++++ W L
Sbjct: 13 KKLKAGQVIRSDGPKSHLK-KKGTPTMGGIMIVFAIIVSTVL--------------WAQL 57
Query: 124 ESIYFCFVSFSTIGFG------DYVSAQAIDYPNSS-LYSFWNYIFLI---LGCSCIYSL 173
+ Y V F +G+G DY + I ++ L + I L
Sbjct: 58 GNPYVLLVLFVLLGYGFIGFVDDY---RKIKRKSNKGLTAKQKLFGQIIIALIFCTWLYY 114
Query: 174 FNVTSIVIKQFLNWLIYEMDMF 195
+ + + F+ ++++ +F
Sbjct: 115 YGPDTFIYIPFIKDFMFDLGLF 136
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 30.3 bits (69), Expect = 1.5
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 50 LERIITLLAYILRALYIRKLLRSGQDLSEDERNESLEEWKPSVYWVMLCLIVASIVIA 107
L R+ +L IL +L++ +LLR G L E + S + ++++++ +A IV+A
Sbjct: 158 LGRLAFILLLILLSLFLWRLLRPGLPLYEPKEGSSSHLLRRLLWFLLILAPLALIVLA 215
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid
transporter AT1, 2 and 3, and related proteins;
solute-binding domain. This subgroup includes the
solute-binding domain of transmembrane transporters,
which transport, i) neutral amino acids: NTT4 (also
called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3),
and B0AT1 (also called HND); the human genes encoding
these are SLC6A17, SLC6A15, and SLC6A19 respectively,
ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino
acids, such as proline, pipecolate, MeAIB, and
sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The
human genes encoding B0AT3 and SIT1 are SLC6A18 and
SLC6A20 respectively. Transporters in this subgroup may
play a role in disorders including major depression,
Hartnup disorder, increased susceptibility to myocardial
infarction, and iminoglycinuria. This subgroup belongs
to the solute carrier 6 (SLC6) transporter family.
Length = 565
Score = 29.2 bits (66), Expect = 3.7
Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 35/121 (28%)
Query: 29 LFVIVYGFLGCSG-GILFFNLF------LERIITLLAYILRALYIRKLLRSGQDLSEDER 81
L + G + G + +F L +I L ++ Y+ L R D+
Sbjct: 428 LVCFLIGLIFTQRSGNYWVQMFDSYSGTLPLLIIALFEMIAVSYVYGLDRFEDDI----- 482
Query: 82 NESLEEWKPSVYW----------VMLCLIVASIV------------IAGCASFVYVPYEN 119
E + +P YW ML ++VASIV A AS +PY
Sbjct: 483 -EYMTGKRPGWYWKITWRYVSPLAMLVILVASIVQLVTKPPTYSAWNAELASTESLPYPG 541
Query: 120 W 120
W
Sbjct: 542 W 542
>gnl|CDD|217301 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals and numerous prevalence
studies have raised questions about its role in
unexplained hepatitis. ORF1 is a large 750 residue
protein. The N-terminal half of this protein corresponds
to the capsid protein.
Length = 525
Score = 29.2 bits (66), Expect = 4.2
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 205 GRVLRRHSIRVQRERERRRRSSITL----PKTIRR 235
R RR R +R R RR+R + L P+TIR+
Sbjct: 41 RRRRRRR--RRRRRRRRRKRKKLILKQWQPETIRK 73
>gnl|CDD|176108 cd08416, PBP2_MdcR, The C-terminal substrate-binding domian of
LysR-type transcriptional regulator MdcR, which involved
in the malonate catabolism contains the type 2
periplasmic binding fold. This family includes the
C-terminal substrate binding domain of LysR-type
transcriptional regulator (LTTR) MdcR that controls the
expression of the malonate decarboxylase (mdc) genes.
Like other members of the LTTRs, MdcR is a positive
regulatory protein for its target promoter and composed
of two functional domains joined by a linker helix
involved in oligomerization: an N-terminal HTH
(helix-turn-helix) domain, which is responsible for the
DNA-binding specificity, and a C-terminal
substrate-binding domain, which is structurally
homologous to the type 2 periplasmic binding proteins
(PBP2). The PBP2 are responsible for the uptake of a
variety of substrates such as phosphate, sulfate,
polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation
across the cytoplasmic membrane energized by ATP
hydrolysis. Besides transport proteins, the PBP2
superfamily includes the substrate- binding domains from
ionotropic glutamate receptors, LysR-like
transcriptional regulators, and unorthodox sensor
proteins involved in signal transduction.
Length = 199
Score = 28.5 bits (64), Expect = 4.9
Identities = 8/27 (29%), Positives = 20/27 (74%)
Query: 330 IVLQVSDIYNVLTFVASDIKNKLIPTR 356
+V++V+DI+++++ V+ + L+P R
Sbjct: 128 VVMRVNDIFSLMSMVSGGVGYALLPGR 154
>gnl|CDD|220815 pfam10577, UPF0560, Uncharacterized protein family UPF0560. This
family of proteins has no known function.
Length = 805
Score = 28.7 bits (64), Expect = 5.5
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 202 DKTGRVLRRHSIRVQRERERRRRSSITLPKT-IRRERNRPLGRICDVVPQADDDSNGFDE 260
D+ +V + V+ R R S P + RR R R R D + D D G D+
Sbjct: 733 DEGSKVSGEQAPTVEESRGRSSTDSSREPLSSPRRRRGR---RPEDELDDDDGDDAGEDK 789
Query: 261 NSDGARR 267
S +R
Sbjct: 790 KSPWQKR 796
>gnl|CDD|177131 MTH00059, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 289
Score = 28.4 bits (64), Expect = 6.0
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 36/108 (33%)
Query: 98 CLIVASIVIAGCA--SFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLY 155
+V + F+Y+ Y W+ IYF +S D + Y
Sbjct: 178 ATLVVACFCLSIDLCFFLYLYYFFWSSGVIIYFSSLS---------------DSNDLKGY 222
Query: 156 SFWNYIFLILG-------------CSCIYSLFNVTSIVIKQFLNWLIY 190
F+ + FL+L I SI + L W+IY
Sbjct: 223 YFFGFCFLLLSTPVSFPLFYKLSVSIGIIYS----SIYV--LLVWVIY 264
>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional.
Length = 393
Score = 28.4 bits (64), Expect = 6.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 126 IYFCFVSFSTIGFGDYV 142
YF V+ ST+G+GD V
Sbjct: 173 FYFSIVTMSTVGYGDIV 189
>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate
synthase; Reviewed.
Length = 279
Score = 28.0 bits (63), Expect = 8.1
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 41 GGILFFNLFLERIITLLAYILRALYIRKLLRSGQDLSEDERN--ESLEEWKPSVYWVMLC 98
GG+ FN+ RII L + + R++++ +D+ D + +L P Y +
Sbjct: 146 GGLAVFNVL--RIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITL----PIKYGIKKS 199
Query: 99 LIVASIVIAGCASFVYVPYE----NWTYLESIYFCFVSF 133
+A I++ +PY YL + C + F
Sbjct: 200 WYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILF 238
>gnl|CDD|221761 pfam12767, SAGA-Tad1, Transcriptional regulator of RNA polII, SAGA,
subunit. The yeast SAGA complex is a multifunctional
coactivator that regulates transcription by RNA
polymerase II. It is formed of five major modular
subunits and shows a high degree of structural
conservation to human TFTC and STAGA. The complex can
also be conceived of as consisting of two
histone-fold-containing core subunits, and this family
is one of these. As a family it is likely to carry
binding regions for interactions with a number of the
other components of the complex.
Length = 210
Score = 27.8 bits (62), Expect = 8.3
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 221 RRRRSSITLPKTIRRERNRPLGRICDVVPQADDDSNGFDENSDGARRLSGEL 272
R RS L + + R GR+ + + + + S +GEL
Sbjct: 109 RASRSVKRLKRELMGLSPRERGRLKKLTKKPQGKQSTGESVSLPLCYETGEL 160
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 26.9 bits (60), Expect = 8.8
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 198 RKPPDKTGRVLRRHSIRVQRERERRRRSSITLPKTIRRERNRPLGR 243
RK P K R+ R R +R +ER + K R+ R + R
Sbjct: 85 RKRPGKKRRIALRL--RRERTKERAEKE-----KRTRKNREKKFKR 123
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 28.1 bits (63), Expect = 9.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 320 TVGPLAIINYIVLQVSDIYNVLTFVASDIKNKLI 353
TVG L +N ++ Q+S N L F +I+ L
Sbjct: 198 TVGDLVNVNALLFQLSIPLNFLGFSYREIRQALT 231
>gnl|CDD|129474 TIGR00378, cax, calcium/proton exchanger (cax). [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 349
Score = 27.9 bits (62), Expect = 9.6
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 53 IITLLAYIL---------RALYIRKLLRSGQDLSEDERNESLEEWKPSVYWVMLCLIVAS 103
I+ ++ Y+L ALY ++ + + + ERN SV + L+ +
Sbjct: 158 IVIIIVYVLFLYFQLGTHHALYEQQEAETDEVMETIERNP---HHSLSVKSSTVVLLGTT 214
Query: 104 IVIAGCASFVYVPYEN 119
+++A C+ F+ +N
Sbjct: 215 VIVAFCSEFLVGTIDN 230
>gnl|CDD|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion
transport and metabolism].
Length = 438
Score = 27.8 bits (62), Expect = 9.7
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 114 YVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSC-IYS 172
+ YENW + V + Y + Y + S+ F +LG IYS
Sbjct: 149 NIGYENWRIAHRL--MAVVYILGLLHSYGLLNYL-YLSWPAVSWLVIAFALLGLLAAIYS 205
Query: 173 LF 174
+F
Sbjct: 206 IF 207
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.425
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,252,236
Number of extensions: 1906056
Number of successful extensions: 2864
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2852
Number of HSP's successfully gapped: 71
Length of query: 370
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 272
Effective length of database: 6,590,910
Effective search space: 1792727520
Effective search space used: 1792727520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (26.9 bits)