RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4749
(370 letters)
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 98.8 bits (245), Expect = 1e-23
Identities = 44/195 (22%), Positives = 77/195 (39%), Gaps = 13/195 (6%)
Query: 5 LSFWVELNYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRAL 64
F + +GYG+ A +T G+LF I Y +G I F + L + L LR
Sbjct: 120 FFFSGTIITTIGYGNVALRTDAGRLFCIFYALVG----IPLFGILLAGVGDRLGSSLRHG 175
Query: 65 YIRKLLRSGQDLSEDERNESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLE 124
+ V ML L++ ++ +FV+ E+W+ LE
Sbjct: 176 IGHIEAI--------FLKWHVPPELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLE 227
Query: 125 SIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQF 184
+IYF V+ +T+GFGDYV+ + + + +++LG + S+ ++
Sbjct: 228 AIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPL-VWFWILLGLAYFASVLTTIGNWLRVV 286
Query: 185 LNWLIYEMDMFCCRK 199
EM +
Sbjct: 287 SRRTRAEMGGLTAQS 301
Score = 38.7 bits (89), Expect = 0.002
Identities = 28/210 (13%), Positives = 59/210 (28%), Gaps = 22/210 (10%)
Query: 19 STAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYIL------RAL-------Y 65
+TAPQ P + G G + L + +L Y++ RAL
Sbjct: 2 TTAPQEPPARPLQAGSGAGPAPGRAMRSTTLLALLALVLLYLVSGALVFRALEQPHEQQA 61
Query: 66 IRKLLRSGQDLSEDERNESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLES 125
R+L + S +E + + + S + W +
Sbjct: 62 QRELGEVREKFLRAHPCVSDQELG--LLIKEVADALGGGADPETQSTSQSSHSAWDLGSA 119
Query: 126 IYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFL 185
+F +TIG+G+ + + + ++G L + L
Sbjct: 120 FFFSGTIITTIGYGNV-------ALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSL 172
Query: 186 NWLIYEMDMFCCRKPPDKTGRVLRRHSIRV 215
I ++ + + + +
Sbjct: 173 RHGIGHIEAIFLKWHVPPELVRVLSAMLFL 202
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 98.0 bits (243), Expect = 1e-23
Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 13/178 (7%)
Query: 5 LSFWVELNYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRAL 64
L F + GYG T P + GK F I+Y +G +LF ++RI +
Sbjct: 98 LFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLY 157
Query: 65 YIRKLLRSGQDLSEDERNESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLE 124
+ + S ++ V+ V+L + S A+ V ++W +LE
Sbjct: 158 FHIRWGFS-------------KQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLE 204
Query: 125 SIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIK 182
S YFCF+S STIG GDYV + + LY +L+LG + + + +
Sbjct: 205 SFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHE 262
Score = 32.9 bits (74), Expect = 0.13
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQ 74
+G G P + F +Y +G + +L + + ++ + RK+ +
Sbjct: 216 IGLGDYVPGEGYNQKFRELY-KIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKK 274
Query: 75 DLSEDE 80
D E +
Sbjct: 275 DKDEVD 280
Score = 32.9 bits (74), Expect = 0.15
Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 10/127 (7%)
Query: 78 EDERNESLEEWKP---SVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFS 134
+ LEE + L ++ + NW + +++F S
Sbjct: 47 RKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVSVLSQASGNWNWDFTSALFFASTVLS 106
Query: 135 TIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDM 194
T G+G V P S + I+ ++G I +
Sbjct: 107 TTGYGHTV-------PLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFH 159
Query: 195 FCCRKPP 201
Sbjct: 160 IRWGFSK 166
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 55.3 bits (133), Expect = 7e-10
Identities = 17/107 (15%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Query: 85 LEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSA 144
L WK + V+ L + +++ + Y E ++++YF V+ +T+G G++
Sbjct: 16 LRAWKDKEFQVLFVLTILTLISG---TIFYSTVEGLRPIDALYFSVVTLTTVGAGNFS-- 70
Query: 145 QAIDYPNSSLYSFWNYIFLILGCSCIYSLFN--VTSIVIKQFLNWLI 189
P + + +++ +G ++ + ++ + L+ L+
Sbjct: 71 -----PQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNLV 112
Score = 34.5 bits (79), Expect = 0.012
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERII 54
VG G+ +PQT GK+F I+Y F+G F + +
Sbjct: 64 VGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 103
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 54.4 bits (131), Expect = 9e-10
Identities = 16/98 (16%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 94 WVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSS 153
+ +L ++ +I+G + Y E ++++YF V+ +T+G+GD+ P +
Sbjct: 7 FQVLFVLTILTLISG--TIFYSTVEGLRPIDALYFSVVTLTTVGYGDFS-------PQTD 57
Query: 154 LYSFWNYIFLILGCSCIYSLFN--VTSIVIKQFLNWLI 189
+ +++ +G ++ + ++ + L+ L+
Sbjct: 58 FGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNLV 95
Score = 34.4 bits (79), Expect = 0.010
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERII 54
VGYG +PQT GK+F I+Y F+G F + +
Sbjct: 47 VGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 86
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 53.5 bits (129), Expect = 1e-09
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 94 WVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYPNSS 153
+ L+V +++I G A F ++ E ++ S+Y+ FV+ +T+G+GDY P++
Sbjct: 3 ATRILLLVLAVIIYGTAGFHFI--EGESWTVSLYWTFVTIATVGYGDYS-------PHTP 53
Query: 154 LYSFWNYIFLILGCSCI-YSLFNVTSIVI 181
L ++ ++LG ++ + +I
Sbjct: 54 LGMYFTCTLIVLGIGTFAVAVERLLEFLI 82
Score = 34.6 bits (80), Expect = 0.005
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERII 54
VGYG +P T G F LG + LE +I
Sbjct: 43 VGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFLI 82
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 51.1 bits (122), Expect = 4e-08
Identities = 19/140 (13%), Positives = 51/140 (36%), Gaps = 10/140 (7%)
Query: 85 LEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSA 144
L WK + V+ L ++ + Y E L+++YF V+ +T+G G++
Sbjct: 19 LRAWKDKEFQVLFVLTFLTLTSG---TIFYSTVEGLRPLDALYFSVVTLTTVGDGNFS-- 73
Query: 145 QAIDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDMFCCRKPPDKT 204
P + + +++ +G ++ + ++ ++ + + R +
Sbjct: 74 -----PQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEK 128
Query: 205 GRVLRRHSIRVQRERERRRR 224
+ + R+ R
Sbjct: 129 LEAIEKKLAEHSRQGSLVPR 148
Score = 35.3 bits (81), Expect = 0.011
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAY--------ILRALYI 66
VG G+ +PQT GK+F I+Y F+G F + + R +
Sbjct: 67 VGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVM 126
Query: 67 RKLLRSGQDLSEDERNESL 85
KL + L+E R SL
Sbjct: 127 EKLEAIEKKLAEHSRQGSL 145
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 49.8 bits (119), Expect = 6e-07
Identities = 24/105 (22%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 91 SVYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGDYVSAQAIDYP 150
V + L+V +++I G A F ++ E ++ S+Y+ FV+ +T+G+GDY P
Sbjct: 17 KVPATRILLLVLAVIIYGTAGFHFI--EGESWTVSLYWTFVTIATVGYGDYS-------P 67
Query: 151 NSSLYSFWNYIFLILGCS-CIYSLFNVTSIVIKQFLNWLIYEMDM 194
++ L ++ ++LG ++ + +I + L+ +D+
Sbjct: 68 STPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLIDV 112
Score = 39.0 bits (91), Expect = 0.002
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQ 74
VGYG +P T G F + L GI F + +ER++ L + + + +
Sbjct: 60 VGYGDYSPSTPLGMYFTVTLIVL----GIGTFAVAVERLLEFLINREQMKLMGLIDVAKS 115
Query: 75 D 75
Sbjct: 116 R 116
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 4e-05
Identities = 39/180 (21%), Positives = 55/180 (30%), Gaps = 72/180 (40%)
Query: 12 NYKV-----GYGSTAPQTTPGKLFVIVYGFLGCSGGIL-------------FFNLFLERI 53
+Y V G+ TPG+L + G G S G++ FF +
Sbjct: 248 HYVVTAKLLGF-------TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR-KA 299
Query: 54 ITLLAYI-LRALYIRKLLRSGQDLSEDERNESLE--EWKPSVYWVMLCLIVASIVIAGCA 110
IT+L +I +R L +SLE E PS ML I+
Sbjct: 300 ITVLFFIGVRC----YEAYPNTSLPPSILEDSLENNEGVPS---PML-------SISNLT 345
Query: 111 S---FVYVPYENWTYL---ESIYF-------CFVSFSTIGFGDYVSAQAIDYPNSSLYSF 157
YV N ++L + + V VS P SLY
Sbjct: 346 QEQVQDYVNKTN-SHLPAGKQVEISLVNGAKNLV----------VSG-----PPQSLYGL 389
Score = 37.0 bits (85), Expect = 0.010
Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 55/255 (21%)
Query: 140 DYVSAQAIDYPNSSLYSFWNYIFL--ILGCS-------------CIYSLFNVTSIVIKQF 184
DY+ + I P + +Y+ +LG + L VT++ I +
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL--VTAVAIAET 286
Query: 185 LNWLIYEMDMFCCRKPPDKTGRVLRRHSIRVQRERERRRRSSITLPKTIRRERNRP---L 241
+W + F K VL +R L ++ P L
Sbjct: 287 DSW-----ESF--FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 242 GRICDV-VPQADDDSNGFDENSDGARRLSGELISMKD-----LLTANKVSLAVMQKQLYE 295
I ++ Q D N + + +++ IS+ + +++ SL + L +
Sbjct: 340 S-ISNLTQEQVQDYVNKTNSHLPAGKQVE---ISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 296 TAQMQREGQAE-PWSERR---DGKFTPGTVGP-----LAIINYIVLQVSDIYNV-LTFVA 345
Q+ P+SER+ +F P P L + ++ + D+ ++F A
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVAS-PFHSHLLVPASDLINK--DLVKNNVSFNA 452
Query: 346 SDIKNKLIPTRKYTT 360
DI+ IP Y T
Sbjct: 453 KDIQ---IPV--YDT 462
Score = 29.2 bits (65), Expect = 2.7
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 32/99 (32%)
Query: 34 YGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLL------------------RSGQD 75
Y L ++ E ++ ++ Y R + ++ + R
Sbjct: 1767 YAALASLADVMSI----ESLVEVVFY--RGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 76 LSEDERNESLEEWKPSVYWVMLCLIV------ASIVIAG 108
S++ +E W+ IV V AG
Sbjct: 1821 FSQEALQYVVERVGKRTGWL--VEIVNYNVENQQYVAAG 1857
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 5e-05
Identities = 52/407 (12%), Positives = 108/407 (26%), Gaps = 116/407 (28%)
Query: 23 QTTPGKLFVIVYGFLGC-------------------SGGILFFNLFLERIITLLAYILRA 63
+ P K V++ G LG I + NL + +L+
Sbjct: 146 ELRPAK-NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 64 LY--IRKLLRSGQDLSEDERNESLEEWKPSVYWVML------CLIV------ASIVIA-- 107
L I S D S + + + + + ++ CL+V A A
Sbjct: 205 LLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 108 -GC-----------ASFVYVPYENWTYLESIYFCFVSFSTIG-FGDYVSAQAIDYPNSSL 154
C F+ L+ Y+ + D P
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV- 322
Query: 155 YSFWNYIFLILGCSCIYSLFNVTSI--VIKQFLN-WLIYEMDMFCCRKPPDKTGRVLRRH 211
+ + ++ I I+ L W ++ DK ++
Sbjct: 323 ------------LTT--NPRRLSIIAESIRDGLATWDNWKHVNC------DKLTTIIES- 361
Query: 212 SIRVQRERERRRR---SSITLPKTIRRERNRPLGRIC----DVVPQADDDS-NGFDENSD 263
S+ V E R+ S+ P + + P + DV+ N + S
Sbjct: 362 SLNVLEPAEYRKMFDRLSV-FPPSA----HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 264 GARRLSGELISMKDL---LTANKVSLAVMQKQLYETAQMQREGQAEPWSERRDGKFTPGT 320
++ IS+ + L + + + + + + + F
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-------------TFDSDD 463
Query: 321 VGPLAIINYI---------VLQVSDIYNVLTFVASD---IKNKLIPT 355
+ P + Y ++ + + V D ++ K+
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 35.0 bits (80), Expect = 0.027
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 88 WKPSVYWVMLCLIVASIVIAGCASFVYVPYENW---TYLESIYFCFVSFSTIGFGDYVSA 144
W + + +V + + A EN ++ ++ +F + +TIG+G +
Sbjct: 46 WPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPI 105
Query: 145 QAIDYPNSSLYSFWNYIFLILGCSCIYSLFN 175
+ +L + + L + S IY+ F
Sbjct: 106 GPLANTLVTLEALCGMLGLAVAASLIYARFT 136
Score = 29.6 bits (66), Expect = 1.7
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERI 53
+GYG P V + G G + +L R
Sbjct: 97 IGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 34.7 bits (79), Expect = 0.042
Identities = 20/165 (12%), Positives = 44/165 (26%), Gaps = 16/165 (9%)
Query: 60 ILRALYIRKLLRSGQDLSEDERNESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVPYEN 119
+ + R DL + W+ + + ++ + A P N
Sbjct: 17 VQHGNLGSETSRYLSDLFTTLVDLK---WRWFFVSLAVLFLLLNTAFATLYMLGSAPIAN 73
Query: 120 WT---YLESIYFCFVSFSTIGFGDYVSAQAIDYPNSSLYSFWNYIFLILGCSCIYSLFNV 176
+ + +F + +T+G+GD +P + + + + +G S I
Sbjct: 74 QFPAGFGGAFFFSVETLATVGYGDM-------HPQTVYAHWIATLEIFVGMSSIALA--- 123
Query: 177 TSIVIKQFLNWLIYEMDMFCCRKPPDKTGRVLRRHSIRVQRERER 221
T + + RV R
Sbjct: 124 TGCAFIKMSQPKKRAETLMFSEHAVISMRDGKLTLMFRVGNLRNS 168
Score = 30.1 bits (67), Expect = 1.2
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 7/89 (7%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYILRALYIRKLLRSGQ 74
VGYG PQT + F+G S L ++ ++ + S +
Sbjct: 93 VGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAVISMR 152
Query: 75 DLS-------EDERNESLEEWKPSVYWVM 96
D + RN + + +
Sbjct: 153 DGKLTLMFRVGNLRNSHMVSAQIRCKLLK 181
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 32.9 bits (75), Expect = 0.14
Identities = 32/206 (15%), Positives = 57/206 (27%), Gaps = 33/206 (16%)
Query: 45 FFNLFLERIITLLAYILRALYIRKLLR---SGQDLSEDERNESLEEWKPSVYWVMLCLIV 101
L+ + A+++ K LR L NE+ ++ +
Sbjct: 86 LAAFLLDGSPDWS--LYCAVWLLKPLRDSTFFPVLGRVLANEARN--------LIGVTTL 135
Query: 102 ASIVIAGCASFVYV--PYENWTYLESI----YFCFVSFSTIGFGDYVSAQAIDYPNSSLY 155
+V+ A YV SI ++ V+ ST G+GD P S
Sbjct: 136 FGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDT-------IPQSFAG 188
Query: 156 SFWNYIFLILGCSCIYSLFNV-TSIVIKQFLNWLIYEMDMFCCRKPPDKTGRVLRRHSIR 214
++ G +F + I+ F F + ++
Sbjct: 189 RVLAGAVMMSG----IGIFGLWAGILATGFYQ--EVRRGDFVRNWQLVAAVPLFQKLGPA 242
Query: 215 VQRERERRRRSSITLPKTIRRERNRP 240
V E R R+ + P
Sbjct: 243 VLVEIVRALRARTVPAGAVICRIGEP 268
Score = 29.4 bits (66), Expect = 1.7
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNL 48
GYG T PQ+ G++ GI F L
Sbjct: 176 TGYGDTIPQSFAGRVL----AGAVMMSGIGIFGL 205
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 32.2 bits (74), Expect = 0.17
Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 13/106 (12%)
Query: 44 LFFNLFLERIITL-LAYILRALYIRKLLRSGQDLSEDERNESLEEWKPSVYWVMLCLIVA 102
L + L +LR L I ++ G + + +
Sbjct: 87 ALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIR------FYHLFGAV 140
Query: 103 SIVIAGCASFVYV------PYENWTYLESIYFCFVSFSTIGFGDYV 142
+ + A +Y+ + +++++ V+ +T+G+GD V
Sbjct: 141 MLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVV 186
Score = 28.0 bits (63), Expect = 5.0
Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFF 46
VGYG P T GK+ G GI
Sbjct: 180 VGYGDVVPATPIGKVI----GIAVMLTGISAL 207
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 30.6 bits (69), Expect = 0.49
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERIITLLAYIL---RALYIRKLLR 71
VGYG P T G+L + GI F L + T + ++R +
Sbjct: 82 VGYGDLYPVTLWGRLV----AVVVMVAGITSFGLVTAALATWFVGQEQQQQQQFVRHSEK 137
Query: 72 SGQDLSEDERNESLEE 87
+ ++ E
Sbjct: 138 AAEEAYTRTTRALHER 153
Score = 27.9 bits (62), Expect = 3.2
Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 22/142 (15%)
Query: 95 VMLCLIVASIVIAGCASFVY-----VPYENW-TYLESIYFCFVSFSTIGFGDYVSAQAID 148
++ IV+ + P TY ++++ + +T+G+GD
Sbjct: 35 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL------- 87
Query: 149 YPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDMFCCRKPP------D 202
YP + + ++ G + VT+ + F+ + F
Sbjct: 88 YPVTLWGRLVAVVVMVAGITSFGL---VTAALATWFVGQEQQQQQQFVRHSEKAAEEAYT 144
Query: 203 KTGRVLRRHSIRVQRERERRRR 224
+T R L R++R + RR
Sbjct: 145 RTTRALHERFDRLERMLDDNRR 166
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 30.9 bits (69), Expect = 0.55
Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 23/171 (13%)
Query: 94 WVMLCLIVASIVIAGCASFVYVPYEN-------WTYLESIYFCFVSFSTIGFGDYVSAQA 146
L +V + +Y + ++ + +F + +T+G+GD
Sbjct: 62 VFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM----- 116
Query: 147 IDYPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDMFCCRKPPDKTGR 206
+P + + + +G S I T +V +F M P
Sbjct: 117 --HPQTVYAHAIATLEIFVGMSGIALS---TGLVFARFARPRAKIMFARHAIVRPFNGRM 171
Query: 207 VLRRHSIRVQRERERR---RRSSITLPKTIRRERNRPLGRICDVVPQADDD 254
L +R R+ R+ + L + L +I D+ ++
Sbjct: 172 TL---MVRAANARQNVIAEARAKMRLMRREHSSEGYSLMKIHDLKLVRNEH 219
Score = 29.0 bits (64), Expect = 2.5
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNLFLERI 53
VGYG PQT + F+G SG L L R
Sbjct: 111 VGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARF 149
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 29.7 bits (67), Expect = 0.70
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNL 48
V YG P T G+L + GI F L
Sbjct: 76 VAYGDLYPVTLWGRLV----AVVVMVAGITSFGL 105
Score = 27.4 bits (61), Expect = 3.8
Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 95 VMLCLIVASIVIAGCASFVY-----VPYENW-TYLESIYFCFVSFSTIGFGDYV 142
++ IV+ + P TY ++++ + +T+ +GD
Sbjct: 29 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLY 82
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 29.3 bits (66), Expect = 0.71
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLG 38
VGYG P T G+ G
Sbjct: 55 VGYGDRYPVTEEGRKVAEQVMKAG 78
Score = 29.0 bits (65), Expect = 0.75
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 95 VMLCLIVASIVIAGCASFVY-----VPYENW-TYLESIYFCFVSFSTIGFGDYV 142
V+ + P +Y ++I++ + +T+G+GD
Sbjct: 8 AQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRY 61
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 29.9 bits (67), Expect = 0.74
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNL 48
VGYG P T G+L + GI F L
Sbjct: 55 VGYGDLYPVTLWGRLV----AVVVMVAGITSFGL 84
Score = 28.7 bits (64), Expect = 1.8
Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 22/142 (15%)
Query: 95 VMLCLIVASIVIAGCASFVY-----VPYENW-TYLESIYFCFVSFSTIGFGDYVSAQAID 148
++ IV+ + P TY ++++ + +T+G+GD
Sbjct: 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL------- 60
Query: 149 YPNSSLYSFWNYIFLILGCSCIYSLFNVTSIVIKQFLNWLIYEMDMFCCRKPP------D 202
YP + + ++ G + L VT+ + F+ F
Sbjct: 61 YPVTLWGRLVAVVVMVAGITSF-GL--VTAALATWFVGREQERRGHFVRHSEKAAEEAYT 117
Query: 203 KTGRVLRRHSIRVQRERERRRR 224
+T R L R++R + RR
Sbjct: 118 RTTRALHERFDRLERMLDDNRR 139
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 29.8 bits (67), Expect = 0.87
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNL 48
VGYG P T G+ + GI + L
Sbjct: 99 VGYGDLYPVTLWGRCV----AVVVMVAGITSYGL 128
Score = 28.3 bits (63), Expect = 2.9
Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 95 VMLCLIVASIVIAGCASFVY-----VPYENW-TYLESIYFCFVSFSTIGFGDYV 142
++ IV+ + P +Y +++++ + +T+G+GD
Sbjct: 52 AGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLY 105
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 30.0 bits (67), Expect = 1.2
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 15 VGYGSTAPQTTPGKLFVIVYGFLGCSGGILFFNL 48
VGYG P T GK+ G L G+L L
Sbjct: 390 VGYGDMVPTTIGGKIV----GSLCAIAGVLTIAL 419
Score = 29.6 bits (66), Expect = 1.6
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Query: 36 FLGCSGGILFFNLFLERIITLLAYILRALYIRKLLR---SGQDLSEDERNESLEEWKPSV 92
FL S + + R++ + I+R L I KL R Q L + + E
Sbjct: 290 FLTESNKSVLQFQNVRRVVQIF-RIMRILRIFKLSRHSKGLQILGQTLKASMRE------ 342
Query: 93 YWVMLCLIVASIVIAGCASFVYVPYENWTYLESI----YFCFVSFSTIGFGDYV 142
+++ + +++ A + E + SI ++ VS +T+G+GD V
Sbjct: 343 LGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMV 396
>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET:
GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*
Length = 132
Score = 28.8 bits (64), Expect = 1.4
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 314 GKFTPGTVGPLAIINYIVLQVSDI 337
G GP N ++ VS++
Sbjct: 1 GSHMTDLAGPTITPNLQLVYVSNV 24
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein;
NMR {Homo sapiens}
Length = 101
Score = 27.6 bits (62), Expect = 2.3
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 11/49 (22%)
Query: 189 IYEMDMFCCRKPPDKTGRVLRRHSIRVQRERERRRRSSITLPKTIRRER 237
+ +D G+V+ +RV+ RRS P R+
Sbjct: 54 VRGLD-----------GKVICGSRVRVELSTGMPRRSRFDRPPARRKLL 91
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis,
sulfur oxidation pathway, Cys S-thiosulfonate,
hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A*
2wde_A 2wdf_A
Length = 562
Score = 29.1 bits (65), Expect = 2.5
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 9/53 (16%)
Query: 234 RRERNRPLGR-ICDVV--PQADDD---SNGFDENSDGARRLSGELISMKDLLT 280
R + + + V + + S G L G+ I+ L
Sbjct: 374 RDTLYSTWDQLVGEAVKAIYPEVEVVFSPAV---RWGTTILPGQAITWDHLYA 423
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family
35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A
{Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A*
Length = 1003
Score = 29.4 bits (65), Expect = 2.7
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 6 SFWVELNYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILF 45
S W N + + AP TP L+ YGF +G +LF
Sbjct: 678 SRWPLANLRTSNNTYAPLKTPVSLYGSDYGF--HAGTLLF 715
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family
GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN;
1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27
b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A*
Length = 971
Score = 29.0 bits (64), Expect = 3.1
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 6 SFWVELNYKVGYGSTAPQTTPGKLFVIVYGFLGCSGGILF 45
S W ++ S TP LF YG+ +G +LF
Sbjct: 656 SAWTSADHAYTNNSAHSLQTPTSLFASDYGY--HTGALLF 693
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
d.58.7.1
Length = 108
Score = 27.1 bits (60), Expect = 3.9
Identities = 6/39 (15%), Positives = 9/39 (23%), Gaps = 8/39 (20%)
Query: 205 GRVLRRHSIRVQRERERRRRSSITLPKTIRRERNRPLGR 243
IRV+ + R R R+
Sbjct: 77 SHEGETAYIRVKVDGPRSPSYG--------RSRSSGPSS 107
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 27.8 bits (61), Expect = 6.2
Identities = 8/49 (16%), Positives = 21/49 (42%)
Query: 92 VYWVMLCLIVASIVIAGCASFVYVPYENWTYLESIYFCFVSFSTIGFGD 140
++W++ + G +F + ++ + F + +TIG+G
Sbjct: 65 IFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGF 113
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport,
complex IV, proton pumps, membrane prote; HET: TPO HEA
CHD PEK PGV DMU; 1.95A {Bos taurus}
Length = 169
Score = 27.2 bits (60), Expect = 7.0
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 80 ERNESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVP 116
E N S EWK V M + ++++ +VY P
Sbjct: 92 EMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGP 128
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME
TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D*
1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D*
2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D*
3ag1_D* 3ag2_D* ...
Length = 147
Score = 26.4 bits (58), Expect = 8.9
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 80 ERNESLEEWKPSVYWVMLCLIVASIVIAGCASFVYVP 116
E N S EWK V M + ++++ +VY P
Sbjct: 70 EMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGP 106
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 27.3 bits (61), Expect = 9.4
Identities = 5/44 (11%), Positives = 14/44 (31%)
Query: 201 PDKTGRVLRRHSIRVQRERERRRRSSITLPKTIRRERNRPLGRI 244
P S ++ + ++ S+ + I + G +
Sbjct: 122 PTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPM 165
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.425
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,719,384
Number of extensions: 343414
Number of successful extensions: 895
Number of sequences better than 10.0: 1
Number of HSP's gapped: 887
Number of HSP's successfully gapped: 60
Length of query: 370
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 275
Effective length of database: 4,049,298
Effective search space: 1113556950
Effective search space used: 1113556950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.4 bits)