BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4754
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/270 (41%), Positives = 137/270 (50%), Gaps = 50/270 (18%)
Query: 4 NHCRLFDLRADK-EVACYKKDSILFGA---TSVDFSVSGRLLFAGYNDYTINVWDSLKCC 59
N C ++ L DK E KK S+ ++ F+ S + D T +WD
Sbjct: 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187
Query: 60 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATS 119
+ GH V CL ++P
Sbjct: 188 LLQSFHGHGADVLCLDLAP----------------------------------------- 206
Query: 120 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179
S +G +G D VWD V HE+ V+ ++ P G AF+SGS D T
Sbjct: 207 ---SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 263
Query: 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 239
CRL+DLRAD+EVA Y K+SI+FGA+SVDFS+SGRLLFAGYNDYTINVWD LK RV+
Sbjct: 264 --CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI 321
Query: 240 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
L GHENRVS L+VSPDGTAF SGSWD TLR
Sbjct: 322 LFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/180 (52%), Positives = 116/180 (64%), Gaps = 2/180 (1%)
Query: 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 61
G C L+D+ + + + + + S +G +G D VWD V
Sbjct: 174 GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV 233
Query: 62 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 121
HE+ V+ ++ P G AF+SGS D T CRL+DLRAD+EVA Y K+SI+FGA+SVD
Sbjct: 234 QAFETHESDVNSVRYYPSGDAFASGSDDAT--CRLYDLRADREVAIYSKESIIFGASSVD 291
Query: 122 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181
FS+SGRLLFAGYNDYTINVWD LK RV+ L GHENRVS L+VSPDGTAF SGSWD TLR
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 7/207 (3%)
Query: 63 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 122
L GH +SC + D +S S DTT C L+D+ ++ + + S+
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTS-SGDTT--CALWDIETGQQTTTFTGHT--GDVMSLSL 192
Query: 123 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182
+ RL +G D + +WD + GHE+ ++ + P+G AF++GS D T C
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT--C 250
Query: 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 242
RLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NVWD+LK R L G
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 243 HENRVSCLQVSPDGTAFSSGSWDTTLR 269
H+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLK 337
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90
S+ + RL +G D + +WD + GHE+ ++ + P+G AF++GS D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 91 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 150
T CRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NVWD+LK R
Sbjct: 249 T--CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181
L GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 66/88 (75%)
Query: 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 65
CRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NVWD+LK R L
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 66 GHENRVSCLQVSPDGTAFSSGSWDTTLR 93
GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLK 337
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 7/207 (3%)
Query: 63 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 122
L GH +SC + D +S S DTT C L+D+ ++ + + S+
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTS-SGDTT--CALWDIETGQQTTTFTGHT--GDVMSLSL 192
Query: 123 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182
+ RL +G D + +WD + GHE+ ++ + P+G AF++GS D T C
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT--C 250
Query: 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 242
RLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NVWD+LK R L G
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 243 HENRVSCLQVSPDGTAFSSGSWDTTLR 269
H+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLK 337
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90
S+ + RL +G D + +WD + GHE+ ++ + P+G AF++GS D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 91 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 150
T CRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NVWD+LK R
Sbjct: 249 T--CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181
L GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 66/88 (75%)
Query: 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 65
CRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NVWD+LK R L
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 66 GHENRVSCLQVSPDGTAFSSGSWDTTLR 93
GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLK 337
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 7/207 (3%)
Query: 63 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 122
L GH +SC + D +S S DTT C L+D+ ++ + + S+
Sbjct: 149 ELAGHTGYLSCCRFLDDNQIVTS-SGDTT--CALWDIETGQQTTTFTGHT--GDVMSLSL 203
Query: 123 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182
+ RL +G D + +WD + GHE+ ++ + P+G AF++GS D T C
Sbjct: 204 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT--C 261
Query: 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 242
RLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NVWD+LK R L G
Sbjct: 262 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 321
Query: 243 HENRVSCLQVSPDGTAFSSGSWDTTLR 269
H+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 322 HDNRVSCLGVTDDGMAVATGSWDSFLK 348
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90
S+ + RL +G D + +WD + GHE+ ++ + P+G AF++GS D
Sbjct: 200 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 259
Query: 91 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 150
T CRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NVWD+LK R
Sbjct: 260 T--CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 317
Query: 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181
L GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 318 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 348
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 66/88 (75%)
Query: 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 65
CRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NVWD+LK R L
Sbjct: 261 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 320
Query: 66 GHENRVSCLQVSPDGTAFSSGSWDTTLR 93
GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 321 GHDNRVSCLGVTDDGMAVATGSWDSFLK 348
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 7/207 (3%)
Query: 63 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 122
L GH +SC + D +S S DTT C L+D+ ++ + + S+
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTS-SGDTT--CALWDIETGQQTTTFTGHT--GDVMSLSL 192
Query: 123 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182
+ RL +G D + +WD + GHE+ ++ + P+G AF++GS D T C
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT--C 250
Query: 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 242
RLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NVWD+LK R L G
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 243 HENRVSCLQVSPDGTAFSSGSWDTTLR 269
H+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLK 337
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90
S+ + RL +G D + +WD + GHE+ ++ + P+G AF++GS D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 91 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 150
T CRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NVWD+LK R
Sbjct: 249 T--CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181
L GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 66/88 (75%)
Query: 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 65
CRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NVWD+LK R L
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 66 GHENRVSCLQVSPDGTAFSSGSWDTTLR 93
GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLK 337
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 7/207 (3%)
Query: 63 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 122
L GH +SC + D +S S DTT C L+D+ ++ + + S+
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTS-SGDTT--CALWDIETGQQTTTFTGHT--GDVMSLSL 192
Query: 123 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182
+ RL +G D + +WD + GHE+ ++ + P+G AF++GS D T C
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT--C 250
Query: 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 242
RLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NVWD+LK R L G
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 243 HENRVSCLQVSPDGTAFSSGSWDTTLR 269
H+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLK 337
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90
S+ + RL +G D + +WD + GHE+ ++ + P+G AF++GS D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 91 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 150
T CRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NVWD+LK R
Sbjct: 249 T--CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181
L GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 66/88 (75%)
Query: 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 65
CRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+ NVWD+LK R L
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 66 GHENRVSCLQVSPDGTAFSSGSWDTTLR 93
GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLK 337
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 118/224 (52%), Gaps = 25/224 (11%)
Query: 64 LMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 122
L GH+ S Q PD T +GS D T C L+D+ + ++ + + G T+
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQT--CVLWDVTTGQRISIFGSE-FPSGHTADVL 209
Query: 123 SVS-----GRLLFAGYNDYTINVWD---SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 174
S+S + +G D T+ +WD + + R H GHE ++ ++ PDG F +G
Sbjct: 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH--GHEGDINSVKFFPDGQRFGTG 267
Query: 175 SWDTTLRCRLFDLRADKEVACYKK-----DSILFGATSVDFSVSGRLLFAGYNDYTINVW 229
S D T CRLFD+R ++ Y + D+ L TSV FS+SGRLLFAGY++ VW
Sbjct: 268 SDDGT--CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325
Query: 230 DSLKCCRVNHL----MGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
D+L V +L HE R+SCL +S DG+A +GSWD L+
Sbjct: 326 DTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLK 369
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 106/201 (52%), Gaps = 22/201 (10%)
Query: 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVS-----GRLLFAGYNDYTINVWD-- 54
G C L+D+ + ++ + + G T+ S+S + +G D T+ +WD
Sbjct: 178 GDQTCVLWDVTTGQRISIFGSE-FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236
Query: 55 -SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--- 110
+ + R H GHE ++ ++ PDG F +GS D T CRLFD+R ++ Y +
Sbjct: 237 ITSRAVRTYH--GHEGDINSVKFFPDGQRFGTGSDDGT--CRLFDMRTGHQLQVYNREPD 292
Query: 111 --DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL----MGHENRVSCLQV 164
D+ L TSV FS+SGRLLFAGY++ VWD+L V +L HE R+SCL +
Sbjct: 293 RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL 352
Query: 165 SPDGTAFSSGSWDTTLRCRLF 185
S DG+A +GSWD L+ F
Sbjct: 353 SSDGSALCTGSWDKNLKIWAF 373
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 113/267 (42%), Gaps = 39/267 (14%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90
SV FS G+ L G D I +WD V L GHE + L P G SGS D
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 91 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRV 149
T+ R++DLR + C SI G T+V S G+ + AG D + VWDS V
Sbjct: 188 TV--RIWDLRTGQ---CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 150 NHL-------MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK----- 197
L GH++ V + + DG + SGS D ++ +L++L+ + K
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV--KLWNLQNANNKSDSKTPNSG 300
Query: 198 ---------KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 248
KD +L AT+ + + +G D + WD + L GH N V
Sbjct: 301 TCEVTYIGHKDFVLSVATTQN----DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356
Query: 249 CLQVS------PDGTAFSSGSWDTTLR 269
+ V+ P+ F++GS D R
Sbjct: 357 SVAVANGSSLGPEYNVFATGSGDCKAR 383
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 98/226 (43%), Gaps = 26/226 (11%)
Query: 65 MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD----LRADKEVACYKKDSILFGAT-- 118
+ H + V C++ S DG ++G TT R+ D R + A K L ++
Sbjct: 61 LDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 120
Query: 119 -------SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 171
SV FS G+ L G D I +WD V L GHE + L P G
Sbjct: 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 180
Query: 172 SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWD 230
SGS D T+ R++DLR + C SI G T+V S G+ + AG D + VWD
Sbjct: 181 VSGSGDRTV--RIWDLRTGQ---CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Query: 231 SLKCCRVNHL-------MGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
S V L GH++ V + + DG + SGS D +++
Sbjct: 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 13/250 (5%)
Query: 32 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 91
V FS G+ + + +D T+ +W+ + L GH + V + SPDG +S S D T
Sbjct: 22 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 80
Query: 92 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151
+ +L++ S + G V FS G+ + + +D T+ +W+ +
Sbjct: 81 V--KLWNRNGQLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 134
Query: 152 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 211
L GH + V + SPDG +S S D T+ +L++ S ++G V FS
Sbjct: 135 LTGHSSSVWGVAFSPDGQTIASASDDKTV--KLWNRNGQLLQTLTGHSSSVWG---VAFS 189
Query: 212 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDE 271
G+ + + +D T+ +W+ + L GH + V + SPDG +S S D T++
Sbjct: 190 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248
Query: 272 ESKNRYMQYL 281
+ +Q L
Sbjct: 249 NRNGQLLQTL 258
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 122/276 (44%), Gaps = 21/276 (7%)
Query: 14 DKEVACYKKDSILF----GATS----VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 65
DK V + ++ L G +S V FS G+ + + +D T+ +W+ + L
Sbjct: 160 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 218
Query: 66 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
GH + V + SPDG +S S D T++ L++ S + G V F
Sbjct: 219 GHSSSVRGVAFSPDGQTIASASDDKTVK--LWNRNGQLLQTLTGHSSSVNG---VAFRPD 273
Query: 126 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
G+ + + +D T+ +W+ + L GH + V + SPDG +S S D T++ L+
Sbjct: 274 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK--LW 330
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 245
+ S ++G V FS G+ + + +D T+ +W+ + L GH +
Sbjct: 331 NRNGQHLQTLTGHSSSVWG---VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 386
Query: 246 RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYL 281
V + SPDG +S S D T++ + +Q L
Sbjct: 387 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 422
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 123/276 (44%), Gaps = 21/276 (7%)
Query: 14 DKEVACYKKDSILF----GATS----VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 65
DK V + ++ L G +S V FS G+ + + +D T+ +W+ + L
Sbjct: 37 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 95
Query: 66 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
GH + V + SPDG +S S D T+ +L++ S ++G V FS
Sbjct: 96 GHSSSVRGVAFSPDGQTIASASDDKTV--KLWNRNGQLLQTLTGHSSSVWG---VAFSPD 150
Query: 126 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
G+ + + +D T+ +W+ + L GH + V + SPDG +S S D T+ +L+
Sbjct: 151 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV--KLW 207
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 245
+ S + G V FS G+ + + +D T+ +W+ + L GH +
Sbjct: 208 NRNGQLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 263
Query: 246 RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYL 281
V+ + PDG +S S D T++ + +Q L
Sbjct: 264 SVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTL 299
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 123/276 (44%), Gaps = 21/276 (7%)
Query: 14 DKEVACYKKDSILF----GATS----VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 65
DK V + ++ L G +S V FS G+ + + +D T+ +W+ + L
Sbjct: 78 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 136
Query: 66 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
GH + V + SPDG +S S D T++ L++ S ++G V FS
Sbjct: 137 GHSSSVWGVAFSPDGQTIASASDDKTVK--LWNRNGQLLQTLTGHSSSVWG---VAFSPD 191
Query: 126 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
G+ + + +D T+ +W+ + L GH + V + SPDG +S S D T++ L+
Sbjct: 192 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK--LW 248
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 245
+ S + G V F G+ + + +D T+ +W+ + L GH +
Sbjct: 249 NRNGQLLQTLTGHSSSVNG---VAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 304
Query: 246 RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYL 281
V + SPDG +S S D T++ +++Q L
Sbjct: 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL 340
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 122/276 (44%), Gaps = 21/276 (7%)
Query: 14 DKEVACYKKDSILF----GATS----VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 65
DK V + ++ L G +S V F G+ + + +D T+ +W+ + L
Sbjct: 242 DKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLT 300
Query: 66 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
GH + V + SPDG +S S D T++ L++ S ++G V FS
Sbjct: 301 GHSSSVWGVAFSPDGQTIASASDDKTVK--LWNRNGQHLQTLTGHSSSVWG---VAFSPD 355
Query: 126 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
G+ + + +D T+ +W+ + L GH + V + SPDG +S S D T++ L+
Sbjct: 356 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK--LW 412
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 245
+ S ++G V FS + + + +D T+ +W+ + L GH +
Sbjct: 413 NRNGQLLQTLTGHSSSVWG---VAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 468
Query: 246 RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYL 281
V + SPDG +S S D T++ + +Q L
Sbjct: 469 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 504
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 118/264 (44%), Gaps = 21/264 (7%)
Query: 14 DKEVACYKKD----SILFGATS----VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 65
DK V + ++ L G +S V FS G+ + + +D T+ +W+ + L
Sbjct: 324 DKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 382
Query: 66 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
GH + V + SPDG +S S D T++ L++ S ++G V FS
Sbjct: 383 GHSSSVRGVAFSPDGQTIASASDDKTVK--LWNRNGQLLQTLTGHSSSVWG---VAFSPD 437
Query: 126 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
+ + + +D T+ +W+ + L GH + V + SPDG +S S D T++ L+
Sbjct: 438 DQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK--LW 494
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 245
+ S + G V FS G+ + + +D T+ +W+ + L GH +
Sbjct: 495 NRNGQLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 550
Query: 246 RVSCLQVSPDGTAFSSGSWDTTLR 269
V + SPDG +S S D T++
Sbjct: 551 SVWGVAFSPDGQTIASASSDKTVK 574
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 121/276 (43%), Gaps = 21/276 (7%)
Query: 14 DKEVACYKKDSILF----GATS----VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 65
DK V + ++ L G +S V FS G+ + + +D T+ +W+ + L
Sbjct: 283 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQHLQTLT 341
Query: 66 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
GH + V + SPDG +S S D T++ L++ S + G V FS
Sbjct: 342 GHSSSVWGVAFSPDGQTIASASDDKTVK--LWNRNGQLLQTLTGHSSSVRG---VAFSPD 396
Query: 126 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
G+ + + +D T+ +W+ + L GH + V + SPD +S S D T++ L+
Sbjct: 397 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK--LW 453
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 245
+ S + G V FS G+ + + +D T+ +W+ + L GH +
Sbjct: 454 NRNGQLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 509
Query: 246 RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYL 281
V + SPDG +S S D T++ + +Q L
Sbjct: 510 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 545
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 209
N L H + V + SPDG +S S D T++ L++ S ++G V
Sbjct: 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVK--LWNRNGQLLQTLTGHSSSVWG---VA 64
Query: 210 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
FS G+ + + +D T+ +W+ + L GH + V + SPDG +S S D T++
Sbjct: 65 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 123
Query: 270 DEESKNRYMQYL 281
+ +Q L
Sbjct: 124 LWNRNGQLLQTL 135
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G +S S D ++ +D + +K ++ +K G + V +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 76
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ K + S A V F+ G L+ + D +WD+ + L
Sbjct: 135 --RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D TL+
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 56 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 108
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ K + S A V F+ G
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDG 164
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D TL +L+
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLW 222
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 283 DVVISTACHPTENIIASAA 301
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L + D I +W + + GH+ +S + S D S S
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWD--SL 144
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD +
Sbjct: 88 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSIL 202
KC + L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 143 KCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDN 195
Query: 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 252
Query: 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
W + E Y+ L I + QG T
Sbjct: 253 KW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 7 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66
R++D++ K + S A V F+ G L+ + D +WD+ + L+
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 67 HENR-VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
+N VS ++ SP+G + + D TL+ L+D K + Y +FSV+
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 126 G-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184
G + + +G D + +W+ V L GH + V P +S +
Sbjct: 251 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA--------- 301
Query: 185 FDLRADKEVACYKKD 199
L DK + YK D
Sbjct: 302 --LENDKTIKLYKSD 314
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G +S S D ++ +D + +K ++ +K G + V +
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 90
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 148
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ K + S A V F+ G L+ + D +WD+ + L
Sbjct: 149 --RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D TL+
Sbjct: 205 IDDDNPPVSFVKFSPNGKYILAATLDNTLK 234
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 70 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 122
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ K + S A V F+ G
Sbjct: 123 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDG 178
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D TL +L+
Sbjct: 179 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLW 236
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 296
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 297 DVVISTACHPTENIIASAA 315
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L + D I +W + + GH+ +S + S D S S
Sbjct: 42 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 101
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWD--SL 144
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD +
Sbjct: 102 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 156
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSIL 202
KC + L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 157 KCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDN 209
Query: 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G
Sbjct: 210 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 266
Query: 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
W + E Y+ L I + QG T
Sbjct: 267 KW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 296
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 7 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66
R++D++ K + S A V F+ G L+ + D +WD+ + L+
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 206
Query: 67 HENR-VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
+N VS ++ SP+G + + D TL+ L+D K + Y +FSV+
Sbjct: 207 DDNPPVSFVKFSPNGKYILAATLDNTLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVT 264
Query: 126 G-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184
G + + +G D + +W+ V L GH + V P +S +
Sbjct: 265 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA--------- 315
Query: 185 FDLRADKEVACYKKD 199
L DK + +K D
Sbjct: 316 --LENDKTIKLWKSD 328
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G +S S D ++ +D + +K ++ +K G + V +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 79
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ K + S A V F+ G L+ + D +WD+ + L
Sbjct: 138 --RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D TL+
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 59 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 111
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ K + S A V F+ G
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDG 167
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D TL +L+
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLW 225
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 286 DVVISTACHPTENIIASAA 304
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L + D I +W + + GH+ +S + S D S S
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWD--SL 144
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD +
Sbjct: 91 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 145
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSIL 202
KC + L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 146 KCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDN 198
Query: 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 255
Query: 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
W + E Y+ L I + QG T
Sbjct: 256 KW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 7 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66
R++D++ K + S A V F+ G L+ + D +WD+ + L+
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 67 HENR-VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
+N VS ++ SP+G + + D TL+ L+D K + Y +FSV+
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253
Query: 126 G-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184
G + + +G D + +W+ V L GH + V P +S +
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA--------- 304
Query: 185 FDLRADKEVACYKKD 199
L DK + +K D
Sbjct: 305 --LENDKTIKLWKSD 317
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G +S S D ++ +D + +K ++ +K G + V +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 76
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ K + S A V F+ G L+ + D +WD+ + L
Sbjct: 135 --RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D TL+
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 56 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 108
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ K + S A V F+ G
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDG 164
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D TL +L+
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLW 222
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 283 DVVISTACHPTENIIASAA 301
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L + D I +W + + GH+ +S + S D S S
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWD--SL 144
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD +
Sbjct: 88 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSIL 202
KC + L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 143 KCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDN 195
Query: 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 252
Query: 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
W + E Y+ L I + QG T
Sbjct: 253 KW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 6/181 (3%)
Query: 7 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66
R++D++ K + S A V F+ G L+ + D +WD+ + L+
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 67 HENR-VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
+N VS ++ SP+G + + D TL+ L+D K + Y +FSV+
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 126 G-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184
G + + +G D + +W+ V L GH + V P +S + + +L
Sbjct: 251 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 310
Query: 185 F 185
F
Sbjct: 311 F 311
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G +S S D ++ +D + +K ++ +K G + V +
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 69
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 127
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ K + S A V F+ G L+ + D +WD+ + L
Sbjct: 128 --RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D TL+
Sbjct: 184 IDDDNPPVSFVKFSPNGKYILAATLDNTLK 213
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 49 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 101
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ K + S A V F+ G
Sbjct: 102 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDG 157
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D TL +L+
Sbjct: 158 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLW 215
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 216 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 275
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 276 DVVISTACHPTENIIASAA 294
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L + D I +W + + GH+ +S + S D S S
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 80
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWD--SL 144
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD +
Sbjct: 81 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 135
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSIL 202
KC + L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 136 KCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDN 188
Query: 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G
Sbjct: 189 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 245
Query: 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
W + E Y+ L I + QG T
Sbjct: 246 KW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 275
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 7 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66
R++D++ K + S A V F+ G L+ + D +WD+ + L+
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 185
Query: 67 HENR-VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
+N VS ++ SP+G + + D TL+ L+D K + Y +FSV+
Sbjct: 186 DDNPPVSFVKFSPNGKYILAATLDNTLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVT 243
Query: 126 G-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184
G + + +G D + +W+ V L GH + V P +S +
Sbjct: 244 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA--------- 294
Query: 185 FDLRADKEVACYKKD 199
L DK + +K D
Sbjct: 295 --LENDKTIKLWKSD 307
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G +S S D ++ +D + +K ++ +K G + V +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 79
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ K + S A V F+ G L+ + D +WD+ + L
Sbjct: 138 --RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D TL+
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 59 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 111
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ K + S A V F+ G
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDG 167
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D TL +L+
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLW 225
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 286 DVVISTACHPTENIIASAA 304
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L + D I +W + + GH+ +S + S D S S
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWD--SL 144
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD +
Sbjct: 91 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 145
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSIL 202
KC + L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 146 KCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDN 198
Query: 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 255
Query: 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
W + E Y+ L I + QG T
Sbjct: 256 KW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 7 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66
R++D++ K + S A V F+ G L+ + D +WD+ + L+
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 67 HENR-VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
+N VS ++ SP+G + + D TL+ L+D K + Y +FSV+
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253
Query: 126 G-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184
G + + +G D + +W+ V L GH + V P +S +
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA--------- 304
Query: 185 FDLRADKEVACYKKD 199
L DK + +K D
Sbjct: 305 --LENDKTIKLWKSD 317
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G +S S D ++ +D + +K ++ +K G + V +
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 95
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 153
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ K + S A V F+ G L+ + D +WD+ + L
Sbjct: 154 --RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D TL+
Sbjct: 210 IDDDNPPVSFVKFSPNGKYILAATLDNTLK 239
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 75 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 127
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ K + S A V F+ G
Sbjct: 128 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDG 183
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D TL +L+
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLW 241
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 301
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 302 DVVISTACHPTENIIASAA 320
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L + D I +W + + GH+ +S + S D S S
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 106
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWD--SL 144
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD +
Sbjct: 107 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSIL 202
KC + L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 162 KCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDN 214
Query: 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 271
Query: 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
W + E Y+ L I + QG T
Sbjct: 272 KW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 301
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 7 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66
R++D++ K + S A V F+ G L+ + D +WD+ + L+
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Query: 67 HENR-VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
+N VS ++ SP+G + + D TL+ L+D K + Y +FSV+
Sbjct: 212 DDNPPVSFVKFSPNGKYILAATLDNTLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVT 269
Query: 126 G-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184
G + + +G D + +W+ V L GH + V P +S +
Sbjct: 270 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA--------- 320
Query: 185 FDLRADKEVACYKKD 199
L DK + +K D
Sbjct: 321 --LENDKTIKLWKSD 333
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G +S S D ++ +D + +K ++ +K G + V +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 73
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ K + S A V F+ G L+ + D +WD+ + L
Sbjct: 132 --RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D TL+
Sbjct: 188 IDDDNPPVSFVKFSPNGKYILAATLDNTLK 217
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 53 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 105
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ K + S A V F+ G
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDG 161
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D TL +L+
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLW 219
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 280 DVVISTACHPTENIIASAA 298
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L + D I +W + + GH+ +S + S D S S
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWD--SL 144
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD +
Sbjct: 85 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 139
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSIL 202
KC + L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 140 KCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDN 192
Query: 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 249
Query: 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
W + E Y+ L I + QG T
Sbjct: 250 KW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 279
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 7 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66
R++D++ K + S A V F+ G L+ + D +WD+ + L+
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Query: 67 HENR-VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
+N VS ++ SP+G + + D TL+ L+D K + Y +FSV+
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247
Query: 126 G-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184
G + + +G D + +W+ V L GH + V P +S +
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA--------- 298
Query: 185 FDLRADKEVACYKKD 199
L DK + +K D
Sbjct: 299 --LENDKTIKLWKSD 311
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G +S S D ++ +D + +K ++ +K G + V +
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 78
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 136
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ K + S A V F+ G L+ + D +WD+ + L
Sbjct: 137 --RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D TL+
Sbjct: 193 IDDDNPPVSFVKFSPNGKYILAATLDNTLK 222
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 58 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 110
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ K + S A V F+ G
Sbjct: 111 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDG 166
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D TL +L+
Sbjct: 167 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLW 224
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 225 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 284
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 285 DVVISTACHPTENIIASAA 303
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L + D I +W + + GH+ +S + S D S S
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 89
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWD--SL 144
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD +
Sbjct: 90 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 144
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSIL 202
KC + L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 145 KCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDN 197
Query: 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G
Sbjct: 198 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 254
Query: 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
W + E Y+ L I + QG T
Sbjct: 255 KW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 284
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 7 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66
R++D++ K + S A V F+ G L+ + D +WD+ + L+
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 194
Query: 67 HENR-VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
+N VS ++ SP+G + + D TL+ L+D K + Y +FSV+
Sbjct: 195 DDNPPVSFVKFSPNGKYILAATLDNTLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVT 252
Query: 126 G-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184
G + + +G D + +W+ V L GH + V P +S +
Sbjct: 253 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA--------- 303
Query: 185 FDLRADKEVACYKKD 199
L DK + +K D
Sbjct: 304 --LENDKTIKLWKSD 316
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G +S S D ++ +D + +K ++ +K G + V +
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 74
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 132
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ K + S A V F+ G L+ + D +WD+ + L
Sbjct: 133 --RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D TL+
Sbjct: 189 IDDDNPPVSFVKFSPNGKYILAATLDNTLK 218
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 54 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 106
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ K + S A V F+ G
Sbjct: 107 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDG 162
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D TL +L+
Sbjct: 163 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLW 220
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 221 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 280
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 281 DVVISTACHPTENIIASAA 299
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L + D I +W + + GH+ +S + S D S S
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 85
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWD--SL 144
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD +
Sbjct: 86 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 140
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSIL 202
KC + L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 141 KCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDN 193
Query: 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G
Sbjct: 194 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 250
Query: 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
W + E Y+ L I + QG T
Sbjct: 251 KW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 280
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 7 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66
R++D++ K + S A V F+ G L+ + D +WD+ + L+
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 190
Query: 67 HENR-VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
+N VS ++ SP+G + + D TL+ L+D K + Y +FSV+
Sbjct: 191 DDNPPVSFVKFSPNGKYILAATLDNTLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVT 248
Query: 126 G-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184
G + + +G D + +W+ V L GH + V P +S +
Sbjct: 249 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA--------- 299
Query: 185 FDLRADKEVACYKKD 199
L DK + +K D
Sbjct: 300 --LENDKTIKLWKSD 312
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G +S S D ++ +D + +K ++ +K G + V +
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 72
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 130
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ K + S A V F+ G L+ + D +WD+ + L
Sbjct: 131 --RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D TL+
Sbjct: 187 IDDDNPPVSFVKFSPNGKYILAATLDNTLK 216
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 52 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 104
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ K + S A V F+ G
Sbjct: 105 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDG 160
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D TL +L+
Sbjct: 161 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLW 218
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 219 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 278
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 279 DVVISTACHPTENIIASAA 297
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L + D I +W + + GH+ +S + S D S S
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 83
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWD--SL 144
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD +
Sbjct: 84 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 138
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSIL 202
KC + L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 139 KCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDN 191
Query: 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G
Sbjct: 192 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 248
Query: 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
W + E Y+ L I + QG T
Sbjct: 249 KW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 278
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 7 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66
R++D++ K + S A V F+ G L+ + D +WD+ + L+
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 188
Query: 67 HENR-VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
+N VS ++ SP+G + + D TL+ L+D K + Y +FSV+
Sbjct: 189 DDNPPVSFVKFSPNGKYILAATLDNTLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVT 246
Query: 126 G-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184
G + + +G D + +W+ V L GH + V P +S +
Sbjct: 247 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA--------- 297
Query: 185 FDLRADKEVACYKKD 199
L DK + +K D
Sbjct: 298 --LENDKTIKLWKSD 310
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G +S S D ++ +D + +K ++ +K G + V +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 73
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ K + S A V F+ G L+ + D +WD+ + L
Sbjct: 132 --RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D TL+
Sbjct: 188 IDDDNPPVSFVKFSPNGKYILAATLDNTLK 217
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 53 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 105
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ K + S A V F+ G
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDG 161
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D TL +L+
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLW 219
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 280 DVVISTACHPTENIIASAA 298
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L + D I +W + + GH+ +S + S D S S
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWD--SL 144
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD +
Sbjct: 85 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 139
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSIL 202
KC + L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 140 KCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDN 192
Query: 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 249
Query: 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
W + E Y+ L I + QG T
Sbjct: 250 KW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 279
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 7 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66
R++D++ K + S A V F+ G L+ + D +WD+ + L+
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Query: 67 HENR-VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
+N VS ++ SP+G + + D TL+ L+D K + Y +FSV+
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247
Query: 126 G-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184
G + + +G D + +W+ V L GH + V P +S +
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA--------- 298
Query: 185 FDLRADKEVACYKKD 199
L DK + +K D
Sbjct: 299 --LENDKTIKLWKSD 311
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G +S S D ++ +D + +K ++ +K G + V +
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 97
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 155
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ K + S A V F+ G L+ + D +WD+ + L
Sbjct: 156 --RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D TL+
Sbjct: 212 IDDDNPPVSFVKFSPNGKYILAATLDNTLK 241
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 77 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 129
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ K + S A V F+ G
Sbjct: 130 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDG 185
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D TL +L+
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLW 243
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 303
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 304 DVVISTACHPTENIIASAA 322
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L + D I +W + + GH+ +S + S D S S
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 108
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWD--SL 144
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD +
Sbjct: 109 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 163
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSIL 202
KC + L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 164 KCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDN 216
Query: 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 273
Query: 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
W + E Y+ L I + QG T
Sbjct: 274 KW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 303
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 7 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66
R++D++ K + S A V F+ G L+ + D +WD+ + L+
Sbjct: 156 RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 213
Query: 67 HENR-VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
+N VS ++ SP+G + + D TL+ L+D K + Y +FSV+
Sbjct: 214 DDNPPVSFVKFSPNGKYILAATLDNTLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVT 271
Query: 126 G-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184
G + + +G D + +W+ V L GH + V P +S +
Sbjct: 272 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA--------- 322
Query: 185 FDLRADKEVACYKKD 199
L DK + +K D
Sbjct: 323 --LENDKTIKLWKSD 335
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G +S S D ++ +D + +K ++ +K G + V +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 79
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ K + S A V F+ G L+ + D +WD+ + L
Sbjct: 138 --RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D TL+
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 59 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 111
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ K + S A V F+ G
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDG 167
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D TL +L+
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLW 225
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 286 DVVISTACHPTENIIASAA 304
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L + D I +W + + GH+ +S + S D S S
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWD--SL 144
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD +
Sbjct: 91 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 145
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSIL 202
KC + L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 146 KCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDN 198
Query: 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 255
Query: 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
W + E Y+ L I + QG T
Sbjct: 256 KW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 7 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66
R++D++ K + S A V F+ G L+ + D +WD+ + L+
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 67 HENR-VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
+N VS ++ SP+G + + D TL+ L+D K + Y +FSV+
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253
Query: 126 G-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184
G + + +G D + +W+ V L GH + V P +S +
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA--------- 304
Query: 185 FDLRADKEVACYKKD 199
L DK + +K D
Sbjct: 305 --LENDKTIKLWKSD 317
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G ++ S D ++ +D + +K ++ +K G + V +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 76
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ K + S A V F+ G L+ + D +WD+ + L
Sbjct: 135 --RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D TL+
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 56 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 108
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ K + S A V F+ G
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDG 164
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D TL +L+
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLW 222
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 283 DVVISTACHPTENIIASAA 301
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L A D I +W + + GH+ +S + S D S S
Sbjct: 28 AVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWD--SL 144
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD +
Sbjct: 88 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSIL 202
KC + L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 143 KCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDN 195
Query: 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 252
Query: 263 SWDTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
W + E Y+ L I + QG T
Sbjct: 253 KW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 7 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66
R++D++ K + S A V F+ G L+ + D +WD+ + L+
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 67 HENR-VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125
+N VS ++ SP+G + + D TL+ L+D K + Y +FSV+
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 126 G-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184
G + + +G D + +W+ V L GH + V P +S +
Sbjct: 251 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA--------- 301
Query: 185 FDLRADKEVACYKKD 199
L DK + +K D
Sbjct: 302 --LENDKTIKLWKSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G +S S D ++ +D + +K ++ +K G + V +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 76
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ + S A V F+ G L+ + D +WD+ + L
Sbjct: 135 --RIWDVKTGMCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D TL+
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 56 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 108
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ + S A V F+ G
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGMCLKTLPAHSDPVSA--VHFNRDG 164
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D TL +L+
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLW 222
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 283 DVVISTACHPTENIIASAA 301
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 116/270 (42%), Gaps = 18/270 (6%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L + D I +W + + GH+ +S + S D S S
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 146
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD
Sbjct: 88 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 147 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSILFG 204
+ L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDNPP 197
Query: 205 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 264
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G W
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGGKW 254
Query: 265 DTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
+ E Y+ L I + QG T
Sbjct: 255 --IVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR-VSCLQVSPDGTAFSSGSW 88
++V F+ G L+ + D +WD+ + L+ +N VS ++ SP+G + +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 89 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCC 147
D TL+ L+D K + Y +FSV+G + + +G D + +W+
Sbjct: 216 DNTLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
Query: 148 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD 199
V L GH + V P +S + L DK + +K D
Sbjct: 274 IVQKLQGHTDVVISTACHPTENIIASAA-----------LENDKTIKLWKSD 314
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 25/243 (10%)
Query: 26 LFGATSVDFSVSGR--LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 83
L G T +S R ++ +G D T+ VW++ ++ L GH + V C+ +
Sbjct: 155 LVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV- 213
Query: 84 SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVW 141
SGS D TL R++D+ + C +L G + V GR + +G D+ + VW
Sbjct: 214 -SGSRDATL--RVWDIETGQ---CLH---VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 264
Query: 142 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI 201
D ++ L GH NRV LQ DG SGS DT++ R++D+ +
Sbjct: 265 DPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSI--RVWDVETGNCIHTLTGHQS 320
Query: 202 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG---HENRVSCLQVSPDGTA 258
L + +L +G D T+ +WD + L G H++ V+CLQ + +
Sbjct: 321 LTSG----MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI 376
Query: 259 FSS 261
SS
Sbjct: 377 TSS 379
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
Query: 64 LMGHENRV-SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 122
L GH++ V +CLQ G SGS D TL+ ++ K C + L G T +
Sbjct: 114 LKGHDDHVITCLQFC--GNRIVSGSDDNTLK--VWSAVTGK---CLRT---LVGHTGGVW 163
Query: 123 SVSGR--LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S R ++ +G D T+ VW++ ++ L GH + V C+ + SGS D TL
Sbjct: 164 SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV--SGSRDATL 221
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCCRVN 238
R ++D+ + C +L G + V GR + +G D+ + VWD ++
Sbjct: 222 R--VWDIETGQ---CLH---VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 273
Query: 239 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLR--DEESKN 275
L GH NRV LQ DG SGS DT++R D E+ N
Sbjct: 274 TLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN 310
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 15/155 (9%)
Query: 38 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 97
GR + +G D+ + VWD ++ L GH NRV LQ DG SGS DT++ R++
Sbjct: 249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSI--RVW 304
Query: 98 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--- 154
D+ + L + +L +G D T+ +WD + L G
Sbjct: 305 DVETGNCIHTLTGHQSLTSG----MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK 360
Query: 155 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA 189
H++ V+CLQ + + SS D T+ +L+DL+
Sbjct: 361 HQSAVTCLQFNKNFVITSSD--DGTV--KLWDLKT 391
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 15/210 (7%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDF 122
L GH VS ++ SP+G +S S D ++ +D + +K ++ +K G + V +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAW 76
Query: 123 SVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
S LL + +D T+ +WD S KC + L GH N V C +P SGS+D ++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
R++D++ + S A V F+ G L+ + D +WD+ + L
Sbjct: 135 --RIWDVKTGMCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 241 MGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 269
+ +N VS ++ SP+G + + D L+
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNDLK 220
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 17/259 (6%)
Query: 9 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMG 66
+D + +K ++ +K G + V +S LL + +D T+ +WD S KC + L G
Sbjct: 56 YDGKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 108
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H N V C +P SGS+D ++ R++D++ + S A V F+ G
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESV--RIWDVKTGMCLKTLPAHSDPVSA--VHFNRDG 164
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCRLF 185
L+ + D +WD+ + L+ +N VS ++ SP+G + + D L +L+
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDL--KLW 222
Query: 186 DLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244
D K + Y +FSV+ G+ + +G D + +W+ V L GH
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Query: 245 NRVSCLQVSPDGTAFSSGS 263
+ V P +S +
Sbjct: 283 DVVISTACHPTENIIASAA 301
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 115/270 (42%), Gaps = 18/270 (6%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
+SV FS +G L + D I +W + + GH+ +S + S D S S
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 88 WDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 146
D TL +++D+ + K + K S +F +F+ L+ +G D ++ +WD
Sbjct: 88 DDKTL--KIWDVSSGKCLKTLKGHSNYVF---CCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 147 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK--DSILFG 204
+ L H + VS + + DG+ S S+D CR++D + + C K D
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQ---CLKTLIDDDNPP 197
Query: 205 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 264
+ V FS +G+ + A D + +WD K + GH+N C+ + + + G W
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGGKW 254
Query: 265 DTTLRDEESKNRYMQYLLRSRITKPTQGLT 294
+ E Y+ L I + QG T
Sbjct: 255 --IVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 15/172 (8%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR-VSCLQVSPDGTAFSSGSW 88
++V F+ G L+ + D +WD+ + L+ +N VS ++ SP+G + +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 89 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCC 147
D L+ L+D K + Y +FSV+G + + +G D + +W+
Sbjct: 216 DNDLK--LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
Query: 148 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD 199
V L GH + V P +S + L DK + +K D
Sbjct: 274 IVQKLQGHTDVVISTACHPTENIIASAA-----------LENDKTIKLWKSD 314
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 118/295 (40%), Gaps = 59/295 (20%)
Query: 34 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93
FS G+ + + D T+ V+ + ++ + HE+ V C S D + ++ S D +
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADK--K 680
Query: 94 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD-SLKCCRVNHL 152
+++D K V Y + S + LL G ND+ + +WD + K CR N +
Sbjct: 681 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR-NTM 739
Query: 153 MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA----------------------- 189
GH N V+ + SPD +S S D TL RL+D+R+
Sbjct: 740 FGHTNSVNHCRFSPDDELLASCSADGTL--RLWDVRSANERKSINVKRFFLSSEDPPEDV 797
Query: 190 -------------DKEVACYKKDSILF-------------GATSV----DFSVSGRLLFA 219
DK + K +LF G S DFS L
Sbjct: 798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857
Query: 220 GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274
+ Y + +W+ +V GH + V + SPDG++F + S D T+R E+K
Sbjct: 858 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 118/305 (38%), Gaps = 48/305 (15%)
Query: 2 GKNHCRLFDLRAD---KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 58
KN LFD+ E+ +I + DFS L + Y + +W+
Sbjct: 817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQY----CDFSPYDHLAVIALSQYCVELWNIDSR 872
Query: 59 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR-------CR--LFDLRADKEVACYK 109
+V GH + V + SPDG++F + S D T+R C+ L+ + +V +
Sbjct: 873 LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE 932
Query: 110 KDSILFGATSVDFSVSGRLLFAGYN---DYTINVWDSLKCCRVNHL----MGHENRVSCL 162
++++ +VD ++ G L AG DY S CC HL G E+ +
Sbjct: 933 NETMVL---AVD-NIRGLQLIAGKTGQIDYLPEAQVSC-CCLSPHLEYVAFGDEDGAIKI 987
Query: 163 QVSPDGTAFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSIL---------------FGAT 206
P+ FSSG R AD K + +DS++ T
Sbjct: 988 IELPNNRVFSSGVGHKK-AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQET 1046
Query: 207 SVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 264
DF + RLL + D T+ VW+ + H+ V +S D T FSS S
Sbjct: 1047 VKDFRLLQDSRLLSWSF-DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSA 1105
Query: 265 DTTLR 269
D T +
Sbjct: 1106 DKTAK 1110
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 65 MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD------LRADKEVACYKKDSILFGAT 118
+GH+ V +Q + DG S S D+ ++ + L+A +E T
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE-------------T 1046
Query: 119 SVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 176
DF + RLL + D T+ VW+ + H+ V +S D T FSS S
Sbjct: 1047 VKDFRLLQDSRLLSWSF-DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSA 1105
Query: 177 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230
D T + FDL + + A FS+ G LL G ++ I +W+
Sbjct: 1106 DKTAKIWSFDLLSPLHELKGHNGCVRCSA----FSLDGILLATGDDNGEIRIWN 1155
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 47 DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106
D T+ VW+ + H+ V +S D T FSS S D T + FDL +
Sbjct: 1064 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1123
Query: 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 142
+ A FS+ G LL G ++ I +W+
Sbjct: 1124 KGHNGCVRCSA----FSLDGILLATGDDNGEIRIWN 1155
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 118/295 (40%), Gaps = 59/295 (20%)
Query: 34 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93
FS G+ + + D T+ V+ + ++ + HE+ V C S D + ++ S D +
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADK--K 687
Query: 94 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD-SLKCCRVNHL 152
+++D K V Y + S + LL G ND+ + +WD + K CR N +
Sbjct: 688 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR-NTM 746
Query: 153 MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA----------------------- 189
GH N V+ + SPD +S S D TL RL+D+R+
Sbjct: 747 FGHTNSVNHCRFSPDDELLASCSADGTL--RLWDVRSANERKSINVKRFFLSSEDPPEDV 804
Query: 190 -------------DKEVACYKKDSILF-------------GATSV----DFSVSGRLLFA 219
DK + K +LF G S DFS L
Sbjct: 805 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 864
Query: 220 GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274
+ Y + +W+ +V GH + V + SPDG++F + S D T+R E+K
Sbjct: 865 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 118/305 (38%), Gaps = 48/305 (15%)
Query: 2 GKNHCRLFDLRAD---KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 58
KN LFD+ E+ +I + DFS L + Y + +W+
Sbjct: 824 AKNKVLLFDIHTSGLLAEIHTGHHSTIQY----CDFSPYDHLAVIALSQYCVELWNIDSR 879
Query: 59 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR-------CR--LFDLRADKEVACYK 109
+V GH + V + SPDG++F + S D T+R C+ L+ + +V +
Sbjct: 880 LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE 939
Query: 110 KDSILFGATSVDFSVSGRLLFAGYN---DYTINVWDSLKCCRVNHL----MGHENRVSCL 162
++++ +VD ++ G L AG DY S CC HL G E+ +
Sbjct: 940 NETMVL---AVD-NIRGLQLIAGKTGQIDYLPEAQVSC-CCLSPHLEYVAFGDEDGAIKI 994
Query: 163 QVSPDGTAFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSIL---------------FGAT 206
P+ FSSG R AD K + +DS++ T
Sbjct: 995 IELPNNRVFSSGVGHKK-AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQET 1053
Query: 207 SVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 264
DF + RLL + D T+ VW+ + H+ V +S D T FSS S
Sbjct: 1054 VKDFRLLQDSRLLSWSF-DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSA 1112
Query: 265 DTTLR 269
D T +
Sbjct: 1113 DKTAK 1117
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 65 MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD------LRADKEVACYKKDSILFGAT 118
+GH+ V +Q + DG S S D+ ++ + L+A +E T
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE-------------T 1053
Query: 119 SVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 176
DF + RLL + D T+ VW+ + H+ V +S D T FSS S
Sbjct: 1054 VKDFRLLQDSRLLSWSF-DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSA 1112
Query: 177 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230
D T + FDL + + A FS+ G LL G ++ I +W+
Sbjct: 1113 DKTAKIWSFDLLSPLHELKGHNGCVRCSA----FSLDGILLATGDDNGEIRIWN 1162
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 47 DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106
D T+ VW+ + H+ V +S D T FSS S D T + FDL +
Sbjct: 1071 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1130
Query: 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 142
+ A FS+ G LL G ++ I +W+
Sbjct: 1131 KGHNGCVRCSA----FSLDGILLATGDDNGEIRIWN 1162
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 107/251 (42%), Gaps = 40/251 (15%)
Query: 5 HCRLFDLRAD---KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 61
RL+DL A + + KD + SV FS+ R + + D TI +W++L C+
Sbjct: 453 ELRLWDLAAGVSTRRFVGHTKDVL-----SVAFSLDNRQIVSASRDRTIKLWNTLGECKY 507
Query: 62 ---NHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG 116
GH + VSC++ SP+ S SWD T++ ++ K S L G
Sbjct: 508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW--------NLSNCKLRSTLAG 559
Query: 117 AT----SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD----- 167
T +V S G L +G D + +WD + ++ L + + + L SP+
Sbjct: 560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLC 618
Query: 168 -GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGAT--------SVDFSVSGRLLF 218
T WD + + DL+ D + K D+ AT S+++S G LF
Sbjct: 619 AATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF 678
Query: 219 AGYNDYTINVW 229
+GY D I VW
Sbjct: 679 SGYTDGVIRVW 689
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 100/256 (39%), Gaps = 69/256 (26%)
Query: 23 DSILFGATSVDFSVSGRLLFAGYNDYTINVW-----DSLKCCRVNHLMGHENRVSCLQVS 77
D + AT +D + ++ + D +I +W D L GH + V + +S
Sbjct: 383 DMVTAIATPID---NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS 439
Query: 78 PDGTAFSSGSWDTTLRCRLFDLRAD---KEVACYKKDSILFGATSVDFSVSGRLLFAGYN 134
DG SGSWD L RL+DL A + + KD + SV FS+ R + +
Sbjct: 440 SDGQFALSGSWDGEL--RLWDLAAGVSTRRFVGHTKDVL-----SVAFSLDNRQIVSASR 492
Query: 135 DYTINVWDSLKCCRV---NHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDLRA 189
D TI +W++L C+ GH + VSC++ SP+ S SWD T++
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK-------- 544
Query: 190 DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 249
VW+ C + L GH VS
Sbjct: 545 --------------------------------------VWNLSNCKLRSTLAGHTGYVST 566
Query: 250 LQVSPDGTAFSSGSWD 265
+ VSPDG+ +SG D
Sbjct: 567 VAVSPDGSLCASGGKD 582
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 199 DSILFGATSVDFSVSGRLLFAGYNDYTINVW-----DSLKCCRVNHLMGHENRVSCLQVS 253
D + AT +D + ++ + D +I +W D L GH + V + +S
Sbjct: 383 DMVTAIATPID---NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS 439
Query: 254 PDGTAFSSGSWDTTLR 269
DG SGSWD LR
Sbjct: 440 SDGQFALSGSWDGELR 455
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 40/250 (16%)
Query: 32 VDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
+ F SG+LL + D TI +WD +C R H GH++ VS + + P+G S S D
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH--GHDHNVSSVSIMPNGDHIVSASRD 213
Query: 90 TTLRCRLFDLRADKEVACY--KKDSILFGATSVDFSVSGRLLFAGYNDYTINVW-DSLKC 146
T+ ++++++ V + ++ + + D G L+ + ND T+ VW + K
Sbjct: 214 KTI--KMWEVQTGYCVKTFTGHREWVRMVRPNQD----GTLIASCSNDQTVRVWVVATKE 267
Query: 147 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGAT 206
C+ L H + V C+ +P+ + Y S G+
Sbjct: 268 CKAE-LREHRHVVECISWAPESS--------------------------YSSISEATGSE 300
Query: 207 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 266
+ G L +G D TI +WD + L+GH+N V + G S + D
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360
Query: 267 TLRDEESKNR 276
TLR + KN+
Sbjct: 361 TLRVWDYKNK 370
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 22/219 (10%)
Query: 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 88
+SV +G + + D TI +W+ V GH V ++ + DGT +S S
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 254
Query: 89 DTTLRCRLF-------DLRADKEV---------ACYKKDSILFGATSVDFSVSGRLLFAG 132
D T+R + +LR + V + Y S G+ + G L +G
Sbjct: 255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314
Query: 133 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 192
D TI +WD + L+GH+N V + G S + D TL R++D + +
Sbjct: 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL--RVWDYKNKR- 371
Query: 193 VACYKK-DSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230
C K ++ TS+DF + + G D T+ VW+
Sbjct: 372 --CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 152 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 211
L GH + V+ + P + S S D T++ ++ + DS+ + F
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV----QDISFD 159
Query: 212 VSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
SG+LL + D TI +WD +C R H GH++ VS + + P+G S S D T++
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMH--GHDHNVSSVSIMPNGDHIVSASRDKTIK 217
Query: 270 DEESKNRY 277
E + Y
Sbjct: 218 MWEVQTGY 225
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 18 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS 77
+ Y S G+ + G L +G D TI +WD + L+GH+N V +
Sbjct: 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 347
Query: 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK-DSILFGATSVDFSVSGRLLFAGYNDY 136
G S + D TL R++D + + C K ++ TS+DF + + G D
Sbjct: 348 SGGKFILSCADDKTL--RVWDYKNKR---CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 402
Query: 137 TINVWD 142
T+ VW+
Sbjct: 403 TVKVWE 408
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 102/248 (41%), Gaps = 17/248 (6%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
+SV + G L G + + +WD + R+ ++ H RV L S + SSGS
Sbjct: 162 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL--SWNSYILSSGS-- 217
Query: 90 TTLRCRLFDLR-ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK--- 145
+ D+R A+ VA S + ++ GR L +G ND +NVW S
Sbjct: 218 RSGHIHHHDVRVAEHHVATLSGHSQEV--CGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 275
Query: 146 -CCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF 203
+ H+ V + P ++G + R++++ + AC
Sbjct: 276 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHS 332
Query: 204 GATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 261
S+ +S + L +G+ + +W +V L GH +RV L +SPDG +S
Sbjct: 333 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 392
Query: 262 GSWDTTLR 269
+ D TLR
Sbjct: 393 AAADETLR 400
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 15/182 (8%)
Query: 34 FSVSGRLLFAGYNDYTINVWDSLK----CCRVNHLMGHENRVSCLQVSP-DGTAFSSGSW 88
++ GR L +G ND +NVW S + H+ V + P ++G
Sbjct: 249 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 308
Query: 89 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKC 146
+ R++++ + AC S+ +S + L +G+ + +W
Sbjct: 309 TSDRHIRIWNVCSG---ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 365
Query: 147 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDL----RADKEVACYKKDSI 201
+V L GH +RV L +SPDG +S + D TLR R F+L R ++E A K S+
Sbjct: 366 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 425
Query: 202 LF 203
+
Sbjct: 426 IH 427
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 102/248 (41%), Gaps = 17/248 (6%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
+SV + G L G + + +WD + R+ ++ H RV L S + SSGS
Sbjct: 151 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL--SWNSYILSSGS-- 206
Query: 90 TTLRCRLFDLR-ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK--- 145
+ D+R A+ VA S + ++ GR L +G ND +NVW S
Sbjct: 207 RSGHIHHHDVRVAEHHVATLSGHSQEV--CGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264
Query: 146 -CCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF 203
+ H+ V + P ++G + R++++ + AC
Sbjct: 265 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHS 321
Query: 204 GATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 261
S+ +S + L +G+ + +W +V L GH +RV L +SPDG +S
Sbjct: 322 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 381
Query: 262 GSWDTTLR 269
+ D TLR
Sbjct: 382 AAADETLR 389
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 15/182 (8%)
Query: 34 FSVSGRLLFAGYNDYTINVWDSLK----CCRVNHLMGHENRVSCLQVSP-DGTAFSSGSW 88
++ GR L +G ND +NVW S + H+ V + P ++G
Sbjct: 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297
Query: 89 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKC 146
+ R++++ + AC S+ +S + L +G+ + +W
Sbjct: 298 TSDRHIRIWNVCSG---ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354
Query: 147 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDL----RADKEVACYKKDSI 201
+V L GH +RV L +SPDG +S + D TLR R F+L R ++E A K S+
Sbjct: 355 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414
Query: 202 LF 203
+
Sbjct: 415 IH 416
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 84/207 (40%), Gaps = 57/207 (27%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD---KEVACYKKDSILFGATSV 120
L GH + VS + +S DG SGSWD TL RL+DL + + KD + SV
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTL--RLWDLTTGTTTRRFVGHTKDVL-----SV 111
Query: 121 DFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSWDTT 179
FS R + +G D TI +W++L C+ H VSC++ SP+
Sbjct: 112 AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS----------- 160
Query: 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-CRVN 238
S ++ + D + VW+ C + N
Sbjct: 161 ---------------------------------SNPIIVSCGWDKLVKVWNLANCKLKTN 187
Query: 239 HLMGHENRVSCLQVSPDGTAFSSGSWD 265
H+ GH ++ + VSPDG+ +SG D
Sbjct: 188 HI-GHTGYLNTVTVSPDGSLCASGGKD 213
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 95/253 (37%), Gaps = 66/253 (26%)
Query: 32 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 91
V S G+ +G D T+ +WD +GH V + S D SGS D T
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128
Query: 92 LR-------CR--LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 142
++ C+ + D + V+C + F S S ++ + D + VW+
Sbjct: 129 IKLWNTLGVCKYTVQDESHSEWVSCVR-----FSPNS-----SNPIIVSCGWDKLVKVWN 178
Query: 143 SLKC-CRVNHLMGHENRVSCLQVSPDGTAFSSGS-------WD----------------- 177
C + NH+ GH ++ + VSPDG+ +SG WD
Sbjct: 179 LANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIIN 237
Query: 178 --------------TTLRCRLFDLRADKEVACYKKDSILFGA-------TSVDFSVSGRL 216
T +++DL V K++ I + TS+ +S G+
Sbjct: 238 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 297
Query: 217 LFAGYNDYTINVW 229
LFAGY D + VW
Sbjct: 298 LFAGYTDNLVRVW 310
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 240 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
L GH + VS + +S DG SGSWD TLR
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVW 53
TS+ +S G+ LFAGY D + VW
Sbjct: 287 TSLAWSADGQTLFAGYTDNLVRVW 310
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 208 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267
V S G+ +G D T+ +WD +GH V + S D SGS D T
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128
Query: 268 LR 269
++
Sbjct: 129 IK 130
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 84/207 (40%), Gaps = 57/207 (27%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD---KEVACYKKDSILFGATSV 120
L GH + VS + +S DG SGSWD TL RL+DL + + KD + SV
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTL--RLWDLTTGTTTRRFVGHTKDVL-----SV 134
Query: 121 DFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSWDTT 179
FS R + +G D TI +W++L C+ H VSC++ SP+
Sbjct: 135 AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS----------- 183
Query: 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-CRVN 238
S ++ + D + VW+ C + N
Sbjct: 184 ---------------------------------SNPIIVSCGWDKLVKVWNLANCKLKTN 210
Query: 239 HLMGHENRVSCLQVSPDGTAFSSGSWD 265
H+ GH ++ + VSPDG+ +SG D
Sbjct: 211 HI-GHTGYLNTVTVSPDGSLCASGGKD 236
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 95/253 (37%), Gaps = 66/253 (26%)
Query: 32 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 91
V S G+ +G D T+ +WD +GH V + S D SGS D T
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 151
Query: 92 LR-------CR--LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 142
++ C+ + D + V+C + F S S ++ + D + VW+
Sbjct: 152 IKLWNTLGVCKYTVQDESHSEWVSCVR-----FSPNS-----SNPIIVSCGWDKLVKVWN 201
Query: 143 SLKC-CRVNHLMGHENRVSCLQVSPDGTAFSSGS-------WD----------------- 177
C + NH+ GH ++ + VSPDG+ +SG WD
Sbjct: 202 LANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIIN 260
Query: 178 --------------TTLRCRLFDLRADKEVACYKKDSILFGA-------TSVDFSVSGRL 216
T +++DL V K++ I + TS+ +S G+
Sbjct: 261 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320
Query: 217 LFAGYNDYTINVW 229
LFAGY D + VW
Sbjct: 321 LFAGYTDNLVRVW 333
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 240 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
L GH + VS + +S DG SGSWD TLR
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 208 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267
V S G+ +G D T+ +WD +GH V + S D SGS D T
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 151
Query: 268 LR 269
++
Sbjct: 152 IK 153
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVW 53
TS+ +S G+ LFAGY D + VW
Sbjct: 310 TSLAWSADGQTLFAGYTDNLVRVW 333
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 102/248 (41%), Gaps = 17/248 (6%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
+SV + G L G + + +WD + R+ ++ H RV L S + SSGS
Sbjct: 71 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL--SWNSYILSSGS-- 126
Query: 90 TTLRCRLFDLR-ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK--- 145
+ D+R A+ VA S + ++ GR L +G ND +NVW S
Sbjct: 127 RSGHIHHHDVRVAEHHVATLSGHSQEV--CGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184
Query: 146 -CCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF 203
+ H+ V + P ++G + R++++ + AC
Sbjct: 185 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHS 241
Query: 204 GATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 261
S+ +S + L +G+ + +W +V L GH +RV L +SPDG +S
Sbjct: 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 301
Query: 262 GSWDTTLR 269
+ D TLR
Sbjct: 302 AAADETLR 309
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 34 FSVSGRLLFAGYNDYTINVWDSLK----CCRVNHLMGHENRVSCLQVSP-DGTAFSSGSW 88
++ GR L +G ND +NVW S + H+ V + P ++G
Sbjct: 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217
Query: 89 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKC 146
+ R++++ + AC S+ +S + L +G+ + +W
Sbjct: 218 TSDRHIRIWNVCSG---ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274
Query: 147 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDL 187
+V L GH +RV L +SPDG +S + D TLR R F+L
Sbjct: 275 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 112/293 (38%), Gaps = 55/293 (18%)
Query: 34 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93
FS G+ + + D T+ V+ + ++ + HE+ V C S D ++ S D +
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDK--K 686
Query: 94 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD-SLKCCRVNHL 152
++++ + V Y + S S LL G +D + +WD + K CR N +
Sbjct: 687 VKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECR-NTM 745
Query: 153 MGHENRVSCLQVSPDGTAFSSGSWDTTLRC-------------------RLFDLRADKEV 193
GH N V+ + SPD +S S D TL+ L D + D EV
Sbjct: 746 FGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEV 805
Query: 194 ---------------ACYKKDSILFGATS-----------------VDFSVSGRLLFAGY 221
K LF + DFS L
Sbjct: 806 IVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVAL 865
Query: 222 NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274
+ Y + +W++ +V GH + V + SPDG++F + S D T+R E+K
Sbjct: 866 SQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 109/282 (38%), Gaps = 63/282 (22%)
Query: 33 DFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 92
DFS L + Y + +W++ +V GH + V + SPDG++F + S D T+
Sbjct: 853 DFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTI 912
Query: 93 R-------CRLFDLRADKEV-ACYKKDSILFGATSVDFS-----VSGRLLFAGYNDYTIN 139
R C+ + +EV ++++ ++ A VD ++GR G DY
Sbjct: 913 RLWETKKVCKNSAVMLKQEVDVVFQENEVMVLA--VDHIRRLQLINGR---TGQIDYLTE 967
Query: 140 VWDSLKCCRVNHLM--------------------------GHENRVSCLQVSPDGTAFSS 173
S CC HL H+ V +Q + D S
Sbjct: 968 AQVSC-CCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLIS 1026
Query: 174 GSWDTTLRCRLFDLRADKEVACYKKDSILF----GATSVDFSV--SGRLLFAGYNDYTIN 227
S D A+ +V ++ D +F T DF + + RLL + D T+
Sbjct: 1027 SSDD-----------AEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSF-DGTVK 1074
Query: 228 VWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
VW+ + + + H+ V +S D T FSS S D T +
Sbjct: 1075 VWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAK 1116
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 32/208 (15%)
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF----GATSVDF 122
H+ V +Q + D S S D A+ +V ++ D +F T DF
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDD-----------AEIQVWNWQLDKCIFLRGHQETVKDF 1056
Query: 123 SV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
+ + RLL + D T+ VW+ + + + H+ V +S D T FSS S D T
Sbjct: 1057 RLLKNSRLLSWSF-DGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTA 1115
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240
+ FDL + A FSV LL G ++ I +W+ + + HL
Sbjct: 1116 KIWSFDLLLPLHELRGHNGCVRCSA----FSVDSTLLATGDDNGEIRIWN-VSNGELLHL 1170
Query: 241 MGHENRVSCLQVSPDGTAFSSGSWDTTL 268
C +S +G A + G W T L
Sbjct: 1171 --------CAPLSEEGAA-THGGWVTDL 1189
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 21/174 (12%)
Query: 13 ADKEVACYKKDSILF----GATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66
A+ +V ++ D +F T DF + + RLL + D T+ VW+ + + +
Sbjct: 1031 AEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSF-DGTVKVWNIITGNKEKDFVC 1089
Query: 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 126
H+ V +S D T FSS S D T + FDL + A FSV
Sbjct: 1090 HQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSA----FSVDS 1145
Query: 127 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
LL G ++ I +W+ + + HL C +S +G A + G W T L
Sbjct: 1146 TLLATGDDNGEIRIWN-VSNGELLHL--------CAPLSEEGAA-THGGWVTDL 1189
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 99/283 (34%), Gaps = 63/283 (22%)
Query: 32 VDFSVSGRLLFAGYNDYTINVWDSLKCCR-----------------------VNHL---- 64
V FS G +D TI +W++ K C+ V+H+
Sbjct: 894 VMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQ 953
Query: 65 -----MGH-----ENRVSCLQVSPDGTAFSSGSWDTTLRC------RLFDLRADKEVACY 108
G E +VSC +SP + G + + R+F R + +
Sbjct: 954 LINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVW 1013
Query: 109 KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD-SLKCCRVNHLMGHENRVSCLQVSPD 167
+ F+ + L + +D I VW+ L C L GH+ V ++ +
Sbjct: 1014 H----------IQFTADEKTLISSSDDAEIQVWNWQLDKCIF--LRGHQETVKDFRLLKN 1061
Query: 168 GTAFSSGSWDTTLRC-RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 226
S S+D T++ + +K+ C++ + S D S + D T
Sbjct: 1062 SRLLS-WSFDGTVKVWNIITGNKEKDFVCHQGTVL-----SCDISHDATKFSSTSADKTA 1115
Query: 227 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
+W ++ L GH V C S D T ++G + +R
Sbjct: 1116 KIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIR 1158
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 16/207 (7%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWD-SLKCCRVNHLMGHENRVSCLQVSP--DGTAFSSGS 87
SV FS R + +G D + VW+ +C H + VSC++ SP D SG
Sbjct: 114 SVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGG 173
Query: 88 WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 147
WD ++ ++DL + V K + TSV S G L + D +WD K
Sbjct: 174 WDNLVK--VWDLATGRLVTDLKGHTNYV--TSVTVSPDGSLCASSDKDGVARLWDLTKGE 229
Query: 148 RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK---EVACYKKDS--IL 202
++ M ++ + SP+ + T R+FDL E+A + S I+
Sbjct: 230 ALSE-MAAGAPINQICFSPNRYWMCAA---TEKGIRIFDLENKDIIVELAPEHQGSKKIV 285
Query: 203 FGATSVDFSVSGRLLFAGYNDYTINVW 229
S+ +S G L++GY D I VW
Sbjct: 286 PECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK---EVACYKKDSILFGATSV 120
L GH VS + +S +G S SWD +L RL++L+ + + + KD + SV
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSL--RLWNLQNGQCQYKFLGHTKDVL-----SV 115
Query: 121 DFSVSGRLLFAGYNDYTINVWD-SLKCCRVNHLMGHENRVSCLQVSP--DGTAFSSGSWD 177
FS R + +G D + VW+ +C H + VSC++ SP D SG WD
Sbjct: 116 AFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWD 175
Query: 178 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 233
+ +++DL + V K + TSV S G L + D +WD K
Sbjct: 176 NLV--KVWDLATGRLVTDLKGHTNYV--TSVTVSPDGSLCASSDKDGVARLWDLTK 227
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 52/145 (35%), Gaps = 8/145 (5%)
Query: 151 HLMGHENRV---SCLQVSPDGTAFSSGSWDTTLRCRLFDL-RADKEVACYKKDSILFGAT 206
L GH V +C Q T S S D TL + R E + D L G +
Sbjct: 8 QLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 207 S----VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
+ V S +G + D+++ +W+ +GH V + SPD SG
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSG 127
Query: 263 SWDTTLRDEESKNRYMQYLLRSRIT 287
D LR K M L R T
Sbjct: 128 GRDNALRVWNVKGECMHTLSRGAHT 152
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 23/195 (11%)
Query: 26 LFGATSVDFSVSGRLLFAGYNDYTINVWD-SLKCCRVNHLMGHENRVSCLQVSPDGTAFS 84
L AT +S G+ + AG+ D I+ +D S V+ + HE +S +Q SPD T F
Sbjct: 175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFI 234
Query: 85 SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND--------- 135
+ S DT L D+ + + Y+ D L T+V + ++ G +
Sbjct: 235 TSSRDT--NSFLVDVSTLQVLKKYETDCPL--NTAVITPLKEFIILGGGQEAKDVTTTSA 290
Query: 136 ----YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR-----LFD 186
+ + + + + GH ++ + +SP GT+++SG D +R FD
Sbjct: 291 NEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD 350
Query: 187 LRADKEVACYKKDSI 201
+ D E A K+ +
Sbjct: 351 FKYDVEKAAEAKEHM 365
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 114 LFGATSVDFSVSGRLLFAGYNDYTINVWD-SLKCCRVNHLMGHENRVSCLQVSPDGTAFS 172
L AT +S G+ + AG+ D I+ +D S V+ + HE +S +Q SPD T F
Sbjct: 175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFI 234
Query: 173 SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND--------- 223
+ S DT L D+ + + Y+ D L T+V + ++ G +
Sbjct: 235 TSSRDT--NSFLVDVSTLQVLKKYETDCPL--NTAVITPLKEFIILGGGQEAKDVTTTSA 290
Query: 224 ----YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQ 279
+ + + + + GH ++ + +SP GT+++SG D +R + Y
Sbjct: 291 NEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD 350
Query: 280 Y 280
+
Sbjct: 351 F 351
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 97/240 (40%), Gaps = 38/240 (15%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
T V ++ G LLF+ D + +VW SL R+ L GH + + V +GS D
Sbjct: 36 TQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD 95
Query: 90 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149
++ +L+D+ + VA +K V+FS G A +
Sbjct: 96 YSI--KLWDVSNGQCVATWKSP---VPVKRVEFSPCGNYFLA----------------IL 134
Query: 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK--KDSILFGATS 207
+++M + ++ ++ D +L E +K L AT
Sbjct: 135 DNVMKNPGSINIYEIERDSAT--------------HELTKVSEEPIHKIITHEGLDAATV 180
Query: 208 VDFSVSGRLLFAGYNDYTINVWD-SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 266
+S G+ + AG+ D I+ +D S V+ + HE +S +Q SPD T F + S DT
Sbjct: 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT 240
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 29/220 (13%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90
SVD ++ +G D TI VW ++K + L+GH + VS ++V P+ A
Sbjct: 106 SVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDD----- 159
Query: 91 TLRCRLFDLRADKEVACYKKDSILFGA---------TSVDFSVSGRLLFAGYNDYTINVW 141
+ DK V + + A ++ S G L+ + D I +W
Sbjct: 160 --SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Query: 142 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-------KEVA 194
+ L + + + ++ V L SP+ ++ T ++F L E A
Sbjct: 218 N-LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA---TATGIKVFSLDPQYLVDDLRPEFA 273
Query: 195 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234
Y K + A S+ +S G+ LFAGY D I VW +
Sbjct: 274 GYSKAAEPH-AVSLAWSADGQTLFAGYTDNVIRVWQVMTA 312
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 93/234 (39%), Gaps = 56/234 (23%)
Query: 40 LLFAGYNDYTINVW-----DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 94
LL + D T+ W D V GH + V ++ DG S SWD TL
Sbjct: 26 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL-- 83
Query: 95 RLFDLRAD---KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151
RL+D+ + +K D + SVD ++ +G D TI VW ++K +
Sbjct: 84 RLWDVATGETYQRFVGHKSDVM-----SVDIDKKASMIISGSRDKTIKVW-TIKGQCLAT 137
Query: 152 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 211
L+GH + VS ++V P+ +AD D S
Sbjct: 138 LLGHNDWVSQVRVVPNE-------------------KAD------------------DDS 160
Query: 212 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265
V+ ++ AG ND + W+ + +GH + ++ L SPDGT +S D
Sbjct: 161 VT--IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKD 211
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 10 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 58
DLR E A Y K + A S+ +S G+ LFAGY D I VW +
Sbjct: 267 DLR--PEFAGYSKAAEPH-AVSLAWSADGQTLFAGYTDNVIRVWQVMTA 312
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 29/220 (13%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90
SVD ++ +G D TI VW ++K + L+GH + VS ++V P+ A
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDD----- 165
Query: 91 TLRCRLFDLRADKEVACYKKDSILFGA---------TSVDFSVSGRLLFAGYNDYTINVW 141
+ DK V + + A ++ S G L+ + D I +W
Sbjct: 166 --SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 142 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-------KEVA 194
+ L + + + ++ V L SP+ ++ T ++F L E A
Sbjct: 224 N-LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA---TATGIKVFSLDPQYLVDDLRPEFA 279
Query: 195 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234
Y K + A S+ +S G+ LFAGY D I VW +
Sbjct: 280 GYSKAAEPH-AVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 93/234 (39%), Gaps = 56/234 (23%)
Query: 40 LLFAGYNDYTINVW-----DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 94
LL + D T+ W D V GH + V ++ DG S SWD TL
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL-- 89
Query: 95 RLFDLRAD---KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151
RL+D+ + +K D + SVD ++ +G D TI VW ++K +
Sbjct: 90 RLWDVATGETYQRFVGHKSDVM-----SVDIDKKASMIISGSRDKTIKVW-TIKGQCLAT 143
Query: 152 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 211
L+GH + VS ++V P+ +AD D S
Sbjct: 144 LLGHNDWVSQVRVVPNE-------------------KAD------------------DDS 166
Query: 212 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265
V+ ++ AG ND + W+ + +GH + ++ L SPDGT +S D
Sbjct: 167 VT--IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKD 217
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 10 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 58
DLR E A Y K + A S+ +S G+ LFAGY D I VW +
Sbjct: 273 DLR--PEFAGYSKAAEPH-AVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 29/215 (13%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90
SVD ++ +G D TI VW ++K + L+GH + VS ++V P+ A
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDD----- 165
Query: 91 TLRCRLFDLRADKEVACYKKDSILFGA---------TSVDFSVSGRLLFAGYNDYTINVW 141
+ DK V + + A ++ S G L+ + D I +W
Sbjct: 166 --SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 142 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-------KEVA 194
+ L + + + ++ V L SP+ ++ T ++F L E A
Sbjct: 224 N-LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA---TATGIKVFSLDPQYLVDDLRPEFA 279
Query: 195 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 229
Y K + A S+ +S G+ LFAGY D I VW
Sbjct: 280 GYSKAAEPH-AVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 93/234 (39%), Gaps = 56/234 (23%)
Query: 40 LLFAGYNDYTINVW-----DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 94
LL + D T+ W D V GH + V ++ DG S SWD TL
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL-- 89
Query: 95 RLFDLRAD---KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151
RL+D+ + +K D + SVD ++ +G D TI VW ++K +
Sbjct: 90 RLWDVATGETYQRFVGHKSDVM-----SVDIDKKASMIISGSRDKTIKVW-TIKGQCLAT 143
Query: 152 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 211
L+GH + VS ++V P+ +AD D S
Sbjct: 144 LLGHNDWVSQVRVVPNE-------------------KAD------------------DDS 166
Query: 212 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265
V+ ++ AG ND + W+ + +GH + ++ L SPDGT +S D
Sbjct: 167 VT--IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKD 217
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 10 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 53
DLR E A Y K + A S+ +S G+ LFAGY D I VW
Sbjct: 273 DLR--PEFAGYSKAAEPH-AVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 29/220 (13%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90
SVD ++ +G D TI VW ++K + L+GH + VS ++V P+ A
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDS---- 166
Query: 91 TLRCRLFDLRADKEVACYKKDSILFGA---------TSVDFSVSGRLLFAGYNDYTINVW 141
+ DK V + + A ++ S G L+ + D I +W
Sbjct: 167 ---VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 142 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-------KEVA 194
+ L + + + ++ V L SP+ ++ T ++F L E A
Sbjct: 224 N-LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA---TATGIKVFSLDPQYLVDDLRPEFA 279
Query: 195 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234
Y K + A S+ +S G+ LFAGY D I VW +
Sbjct: 280 GYSKAAEPH-AVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 93/234 (39%), Gaps = 56/234 (23%)
Query: 40 LLFAGYNDYTINVW-----DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 94
LL + D T+ W D V GH + V ++ DG S SWD TL
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL-- 89
Query: 95 RLFDLRAD---KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151
RL+D+ + +K D + SVD ++ +G D TI VW ++K +
Sbjct: 90 RLWDVATGETYQRFVGHKSDVM-----SVDIDKKASMIISGSRDKTIKVW-TIKGQCLAT 143
Query: 152 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 211
L+GH + VS ++V P+ +AD D S
Sbjct: 144 LLGHNDWVSQVRVVPNE-------------------KAD------------------DDS 166
Query: 212 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265
V+ ++ AG ND + W+ + +GH + ++ L SPDGT +S D
Sbjct: 167 VT--IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKD 217
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 10 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 58
DLR E A Y K + A S+ +S G+ LFAGY D I VW +
Sbjct: 273 DLR--PEFAGYSKAAEPH-AVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 86/215 (40%), Gaps = 29/215 (13%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90
SVD + +G D TI VW ++K + L+GH + VS ++V P+ A
Sbjct: 112 SVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDD----- 165
Query: 91 TLRCRLFDLRADKEVACYKKDSILFGA---------TSVDFSVSGRLLFAGYNDYTINVW 141
+ DK V + + A ++ S G L+ + D I +W
Sbjct: 166 --SVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Query: 142 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-------KEVA 194
+ L + + + ++ V L SP+ ++ T ++F L E A
Sbjct: 224 N-LAAKKAXYTLSAQDEVFSLAFSPNRYWLAAA---TATGIKVFSLDPQYLVDDLRPEFA 279
Query: 195 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 229
Y K + A S+ +S G+ LFAGY D I VW
Sbjct: 280 GYSKAAEPH-AVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 90/231 (38%), Gaps = 56/231 (24%)
Query: 40 LLFAGYNDYTINVW-----DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 94
LL + D T+ W D V GH + V ++ DG S SWD TL
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL-- 89
Query: 95 RLFDLRAD---KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151
RL+D+ + +K D SVD + +G D TI VW ++K +
Sbjct: 90 RLWDVATGETYQRFVGHKSD-----VXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLAT 143
Query: 152 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 211
L+GH + VS ++V P+ +AD D S
Sbjct: 144 LLGHNDWVSQVRVVPNE-------------------KAD------------------DDS 166
Query: 212 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262
V+ ++ AG ND + W+ + +GH + ++ L SPDGT +S
Sbjct: 167 VT--IISAG-NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 10 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 53
DLR E A Y K + A S+ +S G+ LFAGY D I VW
Sbjct: 273 DLR--PEFAGYSKAAEPH-AVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 93/234 (39%), Gaps = 56/234 (23%)
Query: 40 LLFAGYNDYTINVW-----DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 94
LL + D T+ W D V GH + V ++ DG S SWD TL
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL-- 89
Query: 95 RLFDLRAD---KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151
RL+D+ + +K D + SVD ++ +G D TI VW ++K +
Sbjct: 90 RLWDVATGETYQRFVGHKSDVM-----SVDIDKKASMIISGSRDKTIKVW-TIKGQCLAT 143
Query: 152 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 211
L+GH + VS ++V P+ +AD D S
Sbjct: 144 LLGHNDWVSQVRVVPNE-------------------KAD------------------DDS 166
Query: 212 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265
V+ ++ AG ND + W+ + +GH + ++ L SPDGT +S D
Sbjct: 167 VT--IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKD 217
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 87/220 (39%), Gaps = 29/220 (13%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90
SVD ++ +G D TI VW ++K + L+GH + VS ++V P+ A
Sbjct: 112 SVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDD----- 165
Query: 91 TLRCRLFDLRADKEVACYKKDSILFGA---------TSVDFSVSGRLLFAGYNDYTINVW 141
+ DK V + + A ++ S G L+ + D I +W
Sbjct: 166 --SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 142 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-------KEVA 194
+ L + + + ++ V L SP+ ++ T ++F L E A
Sbjct: 224 N-LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA---TATGIKVFSLDPQYLVDDLRPEFA 279
Query: 195 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234
Y + A S+ +S G+ LFAGY D I VW +
Sbjct: 280 GYSAAAEPH-AVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKC 58
A S+ +S G+ LFAGY D I VW +
Sbjct: 289 AVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 36/216 (16%)
Query: 40 LLFAGYNDYTINVWDSLKCCR-----VNH--LMGHENRVSCLQVSPDGTAFSSGSWDTTL 92
+L +G D T+ +W + + + H L GH + VS L +S + S SWD TL
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 93 RCRLFDLRADKEVACYKK----DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 148
RL+DLR YK+ S ++ SV FS R + + + I +W+ L C+
Sbjct: 101 --RLWDLRTG---TTYKRFVGHQSEVY---SVAFSPDNRQILSAGAEREIKLWNILGECK 152
Query: 149 VN--HLMGHENRVSCL----------QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 196
+ H + VSC+ +V P F+S WD L+ + + +
Sbjct: 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAH 212
Query: 197 KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232
+ + + S +G+ + G D + +WD L
Sbjct: 213 ESN-----VNHLSISPNGKYIATGGKDKKLLIWDIL 243
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 216 LLFAGYNDYTINVWDSLKCCR-----VNH--LMGHENRVSCLQVSPDGTAFSSGSWDTTL 268
+L +G D T+ +W + + + H L GH + VS L +S + S SWD TL
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 269 R 269
R
Sbjct: 101 R 101
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 33/217 (15%)
Query: 38 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP--DGTAFSSGSWDTTLRCR 95
G +L +G D T+ VWD K C + GH + V CL + + +GS D TL
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL--H 230
Query: 96 LFDLRADKEVACYKKD-----------------SILFGATSVDFSVSGR--LLFAGYNDY 136
++ L + V + ++ +L G + +VSG ++ +G D
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 290
Query: 137 TINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 194
T+ VWD +KC + L GH +R+ + S S DTT+ R++DL + +
Sbjct: 291 TLIVWDVAQMKCLYI--LSGHTDRIYSTIYDHERKRCISASMDTTI--RIWDLENGELMY 346
Query: 195 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231
+ + L G +S + L + D +I WD+
Sbjct: 347 TLQGHTALVGL----LRLSDKFLVSAAADGSIRGWDA 379
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 34/246 (13%)
Query: 41 LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 100
+ G +D I V+DS+ + L GH+ V L+ + G SGS D T+ R++D++
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGILVSGSTDRTV--RVWDIK 191
Query: 101 ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-NHLMGHENRV 159
++ + + + + + G D T++VW K V +H G E+
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH--GEEHDY 249
Query: 160 SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA 219
+ +P+ + G LR + +R S G ++ +
Sbjct: 250 PLVFHTPEENPYFVG----VLRGHMASVRT--------------------VSGHGNIVVS 285
Query: 220 GYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277
G D T+ VWD +KC + L GH +R+ + S S DTT+R + +N
Sbjct: 286 GSYDNTLIVWDVAQMKCLYI--LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343
Query: 278 MQYLLR 283
+ Y L+
Sbjct: 344 LMYTLQ 349
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 72/180 (40%), Gaps = 45/180 (25%)
Query: 129 LFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC---- 182
+ +G D TI +WD +L+C R+ L GH V CLQ D +GS D+T+R
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRI--LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201
Query: 183 -------------RLFDLRADK--EVACYKKDSILFGATSVDFSVSGRLLFAGY------ 221
+ LR + V C K SI + ++ R + G+
Sbjct: 202 TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 261
Query: 222 ------------NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
D TI VW++ C V L GH+ ++CLQ SGS D T+R
Sbjct: 262 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIR 319
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 67/162 (41%), Gaps = 29/162 (17%)
Query: 32 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 91
VDF + + + D TI VW++ C V L GH+ ++CLQ SGS D T
Sbjct: 262 VDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT 317
Query: 92 LRCRLFDLRADKEVACYKKDSILFGATSVD--FSVSGRLLFAGYNDYTINVWDSLK---- 145
+ RL+D+ AC + +L G + + + +G D I VWD +
Sbjct: 318 I--RLWDIECG---ACLR---VLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDP 369
Query: 146 -------CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180
C R L+ H RV LQ D S S D T+
Sbjct: 370 RAPAGTLCLRT--LVEHSGRVFRLQF--DEFQIVSSSHDDTI 407
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 95/234 (40%), Gaps = 31/234 (13%)
Query: 34 FSVSGRLLFAGYNDYTINVW----DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
++ +G LL + D I +W DS C V GH+ V + SP G +S S+D
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLASASFD 82
Query: 90 TTLRCRLFDLRADKEVACYKKDSILFG----ATSVDFSVSGRLLFAGYNDYTINVW---- 141
T C + D E + L G SV ++ SG LL D ++ VW
Sbjct: 83 ATT-CIWKKNQDDFECV-----TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136
Query: 142 -DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS 200
D +C V L H V + P +S S+D T+ +L+ D V C +
Sbjct: 137 EDEYECVSV--LNSHTQDVKHVVWHPSQELLASASYDDTV--KLYREEEDDWVCCATLEG 192
Query: 201 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 254
S+ F SG+ L + +D T+ +W +L G+E V+C P
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIWR-------QYLPGNEQGVACSGSDP 239
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 32 VDFSVSGRLLFAGYNDYTINVW----DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
V +S G L + D T +W D +C V L GHEN V + +P G ++ S
Sbjct: 67 VAWSPCGNYLASASFDATTCIWKKNQDDFEC--VTTLEGHENEVKSVAWAPSGNLLATCS 124
Query: 88 WDTTLRCRLFDLRADKEVACYKKDSILFGATS----VDFSVSGRLLFAGYNDYTINVW-- 141
D ++ ++++ + E C S+L T V + S LL + D T+ ++
Sbjct: 125 RDKSVW--VWEVDEEDEYECV---SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYRE 179
Query: 142 --DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC-RLFDLRADKEVACYKK 198
D CC L GHE+ V L P G +S S D T+R R + ++ VAC
Sbjct: 180 EEDDWVCCAT--LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237
Query: 199 DS 200
D
Sbjct: 238 DP 239
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 21/162 (12%)
Query: 120 VDFSVSGRLLFAGYNDYTINVW----DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 175
V +S G L + D T +W D +C V L GHEN V + +P G ++ S
Sbjct: 67 VAWSPCGNYLASASFDATTCIWKKNQDDFEC--VTTLEGHENEVKSVAWAPSGNLLATCS 124
Query: 176 WDTTLRCRLFDLRADKEVACYKKDSILFGATS----VDFSVSGRLLFAGYNDYTINVW-- 229
D ++ ++++ + E C S+L T V + S LL + D T+ ++
Sbjct: 125 RDKSVW--VWEVDEEDEYECV---SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYRE 179
Query: 230 --DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
D CC L GHE+ V L P G +S S D T+R
Sbjct: 180 EEDDWVCCAT--LEGHESTVWSLAFDPSGQRLASCSDDRTVR 219
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 90/232 (38%), Gaps = 25/232 (10%)
Query: 8 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 67
++DL A + S ++ S ++ F+ +D I VWD V GH
Sbjct: 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182
Query: 68 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR 127
+ SC+ +S DGT +G D T+R +DLR +++ + S +F S+ + +G
Sbjct: 183 TDGASCIDISNDGTKLWTGGLDNTVRS--WDLREGRQLQQHDFTSQIF---SLGYCPTGE 237
Query: 128 LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS-------GSWDTTL 180
L G + V K + L HE+ V L+ + G F S +W T
Sbjct: 238 WLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296
Query: 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232
+F + V S D SV + + G D V++ +
Sbjct: 297 GASIFQSKESSSV------------LSCDISVDDKYIVTGSGDKKATVYEVI 336
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 4/136 (2%)
Query: 153 MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV 212
+ +N + ++ PDG G +TL ++DL A + S ++ S
Sbjct: 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLS--IWDLAAPTPRIKAELTSSAPACYALAISP 151
Query: 213 SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR--D 270
++ F+ +D I VWD V GH + SC+ +S DGT +G D T+R D
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Query: 271 EESKNRYMQYLLRSRI 286
+ Q+ S+I
Sbjct: 212 LREGRQLQQHDFTSQI 227
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 33/217 (15%)
Query: 38 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP--DGTAFSSGSWDTTLRCR 95
G +L +G D T+ VWD K C + GH + V CL + + +GS D TL
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL--H 230
Query: 96 LFDLRADKEVACYKKD-----------------SILFGATSVDFSVSGR--LLFAGYNDY 136
++ L + V + ++ +L G + +VSG ++ +G D
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDN 290
Query: 137 TINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 194
T+ VWD KC + L GH +R+ + S S DTT+ R++DL +
Sbjct: 291 TLIVWDVAQXKCLYI--LSGHTDRIYSTIYDHERKRCISASXDTTI--RIWDLENGELXY 346
Query: 195 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231
+ + L G +S + L + D +I WD+
Sbjct: 347 TLQGHTALVGL----LRLSDKFLVSAAADGSIRGWDA 379
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 32/245 (13%)
Query: 41 LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 100
+ G +D I V+DS+ + L GH+ V L+ + G SGS D T+ R++D++
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGILVSGSTDRTV--RVWDIK 191
Query: 101 ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 160
++ + + + + + G D T++VW K V G E+
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-HGEEHDYP 250
Query: 161 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 220
+ +P+ + G LR +R S G ++ +G
Sbjct: 251 LVFHTPEENPYFVG----VLRGHXASVRT--------------------VSGHGNIVVSG 286
Query: 221 YNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYM 278
D T+ VWD KC + L GH +R+ + S S DTT+R + +N +
Sbjct: 287 SYDNTLIVWDVAQXKCLYI--LSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGEL 344
Query: 279 QYLLR 283
Y L+
Sbjct: 345 XYTLQ 349
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 8/196 (4%)
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 123
L GH+ V + +S +S S D RL+DL K++ D+ A ++ FS
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDA--HIRLWDLENGKQIKSI--DAGPVDAWTLAFS 131
Query: 124 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183
+ L G + +N++ + L + + SPDG +SG+ D +
Sbjct: 132 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN-- 189
Query: 184 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 243
+FD+ K + + ++ S+ FS +LL +D I ++D L GH
Sbjct: 190 IFDIATGKLLHTLEGHAMPI--RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 244 ENRVSCLQVSPDGTAF 259
+ V + PD T F
Sbjct: 248 ASWVLNVAFCPDDTHF 263
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 6/167 (3%)
Query: 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 64
H RL+DL K++ D+ A ++ FS + L G + +N++ + L
Sbjct: 103 HIRLWDLENGKQIKSI--DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL 160
Query: 65 MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV 124
+ + SPDG +SG+ D + +FD+ K + + ++ S+ FS
Sbjct: 161 DTRGKFILSIAYSPDGKYLASGAIDGIIN--IFDIATGKLLHTLEGHAMPI--RSLTFSP 216
Query: 125 SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 171
+LL +D I ++D L GH + V + PD T F
Sbjct: 217 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 9/182 (4%)
Query: 92 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151
R R+F+ ++V ++ + +V + + +G +D T+ +W+ +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQ 134
Query: 152 LM-GHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 209
GHE+ V C+ +P D + F+SG D T++ ++ G VD
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER---GVNYVD 191
Query: 210 FSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267
+ + +D TI +WD V L GH + VS P SGS D T
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 268 LR 269
L+
Sbjct: 252 LK 253
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 7/156 (4%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-GHENRVSCLQVSP-DGTAFSSGSW 88
S+ + + +G +D T+ +W+ + GHE+ V C+ +P D + F+SG
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 89 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKC 146
D T++ ++ G VD+ + +D TI +WD
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQER---GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Query: 147 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182
V L GH + VS P SGS D TL+
Sbjct: 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 9/182 (4%)
Query: 92 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151
R R+F+ ++V ++ + +V + + +G +D T+ +W+ +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQ 134
Query: 152 LM-GHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 209
GHE+ V C+ +P D + F+SG D T++ ++ G VD
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER---GVNYVD 191
Query: 210 FSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267
+ + +D TI +WD V L GH + VS P SGS D T
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 268 LR 269
L+
Sbjct: 252 LK 253
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 7/156 (4%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-GHENRVSCLQVSP-DGTAFSSGSW 88
S+ + + +G +D T+ +W+ + GHE+ V C+ +P D + F+SG
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 89 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKC 146
D T++ ++ G VD+ + +D TI +WD
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQER---GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Query: 147 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182
V L GH + VS P SGS D TL+
Sbjct: 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 9/182 (4%)
Query: 92 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151
R R+F+ ++V ++ + +V + + +G +D T+ +W+ +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQ 134
Query: 152 -LMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 209
GHE+ V C+ +P D + F+SG D T++ ++ G VD
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER---GVNYVD 191
Query: 210 FSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267
+ + +D TI +WD V L GH + VS P SGS D T
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 268 LR 269
L+
Sbjct: 252 LK 253
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 7/146 (4%)
Query: 41 LFAGYNDYTINVWDSLKCCRVNH-LMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFD 98
+ +G +D T+ +W+ + GHE+ V C+ +P D + F+SG D T++
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 99 LRADKEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 156
++ G VD+ + +D TI +WD V L GH
Sbjct: 172 QSTPNFTLTTGQER---GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 157 NRVSCLQVSPDGTAFSSGSWDTTLRC 182
+ VS P SGS D TL+
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKI 254
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 11/183 (6%)
Query: 92 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151
R R+F+ ++V ++ + +V + + +G +D T+ +W+ +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQ 134
Query: 152 -LMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 209
GHE+ V C+ +P D + F+SG D T++ ++ G VD
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER---GVNYVD 191
Query: 210 FSV--SGRLLFAGYNDYTINVWD-SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 266
+ + +D TI +WD K C V L GH + VS P SGS D
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 267 TLR 269
TL+
Sbjct: 251 TLK 253
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 9/147 (6%)
Query: 41 LFAGYNDYTINVWDSLKCCRVNH-LMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFD 98
+ +G +D T+ +W+ + GHE+ V C+ +P D + F+SG D T++
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 99 LRADKEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWD-SLKCCRVNHLMGH 155
++ G VD+ + +D TI +WD K C V L GH
Sbjct: 172 QSTPNFTLTTGQER---GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-VATLEGH 227
Query: 156 ENRVSCLQVSPDGTAFSSGSWDTTLRC 182
+ VS P SGS D TL+
Sbjct: 228 MSNVSFAVFHPTLPIIISGSEDGTLKI 254
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 16/179 (8%)
Query: 114 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD---GTA 170
LFG TS F SG +F T + + +K V ++ + CL SP G
Sbjct: 3 LFGTTS-GFGTSGTSMFGSA---TTDNHNPMKDIEVTS--SPDDSIGCLSFSPPTLPGNF 56
Query: 171 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230
+GSW +RC ++++ + + V +S G +F D T +WD
Sbjct: 57 LIAGSWANDVRC--WEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114
Query: 231 SLKCCRVNHLMGHENRVSCLQ--VSPDGTAFSSGSWDTTLR--DEESKNRYMQYLLRSR 285
L + + H+ V + +P+ + +GSWD TL+ D S N M L R
Sbjct: 115 -LSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPER 172
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 100/252 (39%), Gaps = 35/252 (13%)
Query: 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD---GTA 82
LFG TS F SG +F T + + +K V ++ + CL SP G
Sbjct: 3 LFGTTS-GFGTSGTSMFGSA---TTDNHNPMKDIEVTS--SPDDSIGCLSFSPPTLPGNF 56
Query: 83 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 142
+GSW +RC ++++ + + V +S G +F D T +WD
Sbjct: 57 LIAGSWANDVRC--WEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114
Query: 143 SLKCCRVNHLMGHENRVSCLQ--VSPDGTAFSSGSWDTTLRCRLFDLRADKEVA------ 194
L + + H+ V + +P+ + +GSWD TL + +D R+ +
Sbjct: 115 -LSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL--KFWDTRSSNPMMVLQLPE 171
Query: 195 -CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL--- 250
CY D +++ V + G +++ N + + R+ + H++R +
Sbjct: 172 RCYCAD-VIYPMAVVATAERGLIVYQLENQPS-------EFRRIESPLKHQHRCVAIFKD 223
Query: 251 -QVSPDGTAFSS 261
Q P G A S
Sbjct: 224 KQNKPTGFALGS 235
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 100/256 (39%), Gaps = 37/256 (14%)
Query: 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90
SV +S G L G + ++++D ++ + GH+ RV CL S + SSGS
Sbjct: 139 SVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL--SWNRHVLSSGSRSG 196
Query: 91 TLRCRLFDLRADKEVACYKKDSILFGATSV---DFSVSGRLLFAGYNDYTINVWDSLKCC 147
+ D +A ++ ++ ++ V + G L +G ND + +WD+
Sbjct: 197 AIHHH------DVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI 250
Query: 148 RVNHLMGHENRVSCLQVSP-DGTAFSSGS---------WDTTLRCRLFDLRADKEVACYK 197
H V + P ++G W+ R+ + A +V
Sbjct: 251 PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQV---- 306
Query: 198 KDSILFGATSVDFSVSGRLLFA--GYNDYTINVW--DSLKCCRVNHLMGHENRVSCLQVS 253
TS+ +S + + + G+ D +++W S + + H+ RV +S
Sbjct: 307 --------TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS 358
Query: 254 PDGTAFSSGSWDTTLR 269
PDG S+ + D L+
Sbjct: 359 PDGRILSTAASDENLK 374
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 22/247 (8%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--HENRVSCLQVSPDGTAFSSGS 87
T++ S G+ LF+ + IN WD + N + H ++ ++ + G F+ S
Sbjct: 328 TALSSSADGKTLFSADAEGHINSWD-ISTGISNRVFPDVHATMITGIKTTSKGDLFTV-S 385
Query: 88 WDTTLRCRLFD---LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 144
WD L+ + + K VA L A S D ++ + A Y I L
Sbjct: 386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA---VAACYKHIAIYSHGKL 442
Query: 145 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG 204
+++ SC+ +S D + G D+ + + EV + +
Sbjct: 443 TEVPISY------NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI-- 494
Query: 205 ATSVDFSVSGRLLFAGYNDYTI---NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 261
TSV FS +G L A + +V ++ + N H +V+C+ SPD ++
Sbjct: 495 -TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 553
Query: 262 GSWDTTL 268
GS D ++
Sbjct: 554 GSLDNSV 560
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 108/254 (42%), Gaps = 29/254 (11%)
Query: 31 SVDFSVSGRL-LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
SVDF S + +G +D T+ +++ + H V ++ +PDG+ F+S D
Sbjct: 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211
Query: 90 TTLRCRLFDLRADKEVACYKKDSI--------LFGATSVDFSVSGRLLFAGYNDYTINVW 141
T+ L++ + ++ DS+ +FG T +S G + + D TI +W
Sbjct: 212 GTI--VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT---WSPDGTKIASASADKTIKIW 266
Query: 142 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI 201
+ + +V + R+ Q+ G ++ + ++ F + E+ D +
Sbjct: 267 N-VATLKVEKTIPVGTRIEDQQL---GIIWTKQAL-VSISANGFINFVNPELGSI--DQV 319
Query: 202 LFG----ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--HENRVSCLQVSPD 255
+G T++ S G+ LF+ + IN WD + N + H ++ ++ +
Sbjct: 320 RYGHNKAITALSSSADGKTLFSADAEGHINSWD-ISTGISNRVFPDVHATMITGIKTTSK 378
Query: 256 GTAFSSGSWDTTLR 269
G F+ SWD L+
Sbjct: 379 GDLFTV-SWDDHLK 391
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 7/154 (4%)
Query: 20 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP- 78
Y+ D I+ ++V SG +G D I VWD + ++ H +V+C+ SP
Sbjct: 124 YEHDDIV---STVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPH 180
Query: 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA-GYNDYT 137
+ F S S D R L+D R K + + + TS+ + +F G + T
Sbjct: 181 KDSVFLSCSEDN--RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238
Query: 138 INVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 171
+++ D+ V H V+ L SP F
Sbjct: 239 VSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPF 272
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 196 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP- 254
Y+ D I+ ++V SG +G D I VWD + ++ H +V+C+ SP
Sbjct: 124 YEHDDIV---STVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPH 180
Query: 255 DGTAFSSGS-------WDTTLRDEESKN--RYMQYLLRSRITKPTQGLTVYFQDRGRSI 304
+ F S S WDT S+ YL S P Q F D ++
Sbjct: 181 KDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 90/244 (36%), Gaps = 53/244 (21%)
Query: 76 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY--KKDSILFGATSVDFSVSGRLLFAGY 133
VS DGT D L ++ + CY +K+ +LFG D ++G LFA
Sbjct: 35 VSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK--DTXINGVPLFATS 92
Query: 134 NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC----------- 182
+ D L L+GH+ V L DG S GSWD T +
Sbjct: 93 GE------DPLYT-----LIGHQGNVCSLSFQ-DGVVIS-GSWDKTAKVWKEGSLVYNLQ 139
Query: 183 -----------------RLFDLRADKEVACYKKDSILFGATSVDFSVSGRL-------LF 218
+ ADK + ++ D ++ + + V L
Sbjct: 140 AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFI 199
Query: 219 AGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYM 278
+ ND I + D + GHE+ V C+++ P+G S G D T+R +N +
Sbjct: 200 SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE-DRTVRIWSKENGSL 258
Query: 279 QYLL 282
+ ++
Sbjct: 259 KQVI 262
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGS 87
A + D + S LL + I + + + + H +GH N ++ L+ P D S S
Sbjct: 76 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 135
Query: 88 WDTTLRCRLFDLRADKEVACY-----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 141
D L RL++++ D VA + +D +L S D+ + G + + D+++ +W
Sbjct: 136 KDHAL--RLWNIQTDTLVAIFGGVEGHRDEVL----SADYDLLGEKIMSCGMDHSLKLW 188
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGS 175
A + D + S LL + I + + + + H +GH N ++ L+ P D S S
Sbjct: 76 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 135
Query: 176 WDTTLRCRLFDLRADKEVACY-----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 229
D L RL++++ D VA + +D +L S D+ + G + + D+++ +W
Sbjct: 136 KDHAL--RLWNIQTDTLVAIFGGVEGHRDEVL----SADYDLLGEKIMSCGMDHSLKLW 188
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGS 87
A + D + S LL + I + + + + H +GH N ++ L+ P D S S
Sbjct: 75 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 134
Query: 88 WDTTLRCRLFDLRADKEVACY-----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 141
D L RL++++ D VA + +D +L S D+ + G + + D+++ +W
Sbjct: 135 KDHAL--RLWNIQTDTLVAIFGGVEGHRDEVL----SADYDLLGEKIMSCGMDHSLKLW 187
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGS 175
A + D + S LL + I + + + + H +GH N ++ L+ P D S S
Sbjct: 75 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 134
Query: 176 WDTTLRCRLFDLRADKEVACY-----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 229
D L RL++++ D VA + +D +L S D+ + G + + D+++ +W
Sbjct: 135 KDHAL--RLWNIQTDTLVAIFGGVEGHRDEVL----SADYDLLGEKIMSCGMDHSLKLW 187
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGS 87
A + D + S LL + I + + + + H +GH N ++ L+ P D S S
Sbjct: 75 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 134
Query: 88 WDTTLRCRLFDLRADKEVACY-----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 141
D L RL++++ D VA + +D +L S D+ + G + + D+++ +W
Sbjct: 135 KDHAL--RLWNIQTDTLVAIFGGVEGHRDEVL----SADYDLLGEKIMSCGMDHSLKLW 187
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGS 175
A + D + S LL + I + + + + H +GH N ++ L+ P D S S
Sbjct: 75 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 134
Query: 176 WDTTLRCRLFDLRADKEVACY-----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 229
D L RL++++ D VA + +D +L S D+ + G + + D+++ +W
Sbjct: 135 KDHAL--RLWNIQTDTLVAIFGGVEGHRDEVL----SADYDLLGEKIMSCGMDHSLKLW 187
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGS 87
A + D + S LL + I + + + + H +GH N ++ L+ P D S S
Sbjct: 112 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 171
Query: 88 WDTTLRCRLFDLRADKEVACY-----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 141
D L RL++++ D VA + +D +L S D+ + G + + D+++ +W
Sbjct: 172 KDHAL--RLWNIQTDTLVAIFGGVEGHRDEVL----SADYDLLGEKIMSCGMDHSLKLW 224
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGS 175
A + D + S LL + I + + + + H +GH N ++ L+ P D S S
Sbjct: 112 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 171
Query: 176 WDTTLRCRLFDLRADKEVACY-----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 229
D L RL++++ D VA + +D +L S D+ + G + + D+++ +W
Sbjct: 172 KDHAL--RLWNIQTDTLVAIFGGVEGHRDEVL----SADYDLLGEKIMSCGMDHSLKLW 224
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGS 87
A + D + S LL + I + + + + H +GH N ++ L+ P D S S
Sbjct: 71 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 130
Query: 88 WDTTLRCRLFDLRADKEVACY-----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 141
D L RL++++ D VA + +D +L S D+ + G + + D+++ +W
Sbjct: 131 KDHAL--RLWNIQTDTLVAIFGGVEGHRDEVL----SADYDLLGEKIMSCGMDHSLKLW 183
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGS 175
A + D + S LL + I + + + + H +GH N ++ L+ P D S S
Sbjct: 71 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS 130
Query: 176 WDTTLRCRLFDLRADKEVACY-----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 229
D L RL++++ D VA + +D +L S D+ + G + + D+++ +W
Sbjct: 131 KDHAL--RLWNIQTDTLVAIFGGVEGHRDEVL----SADYDLLGEKIMSCGMDHSLKLW 183
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 2 GKNHCRLFDLRADKEVACYKKDSILF--GATSVDFSVSGRLLFAGYNDYTINVWDSL 56
G CR +K+V KK S++F S D +++ + GY++YT + + SL
Sbjct: 705 GSEWCR------NKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSL 755
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 102 DKEVACYKKDSILF--GATSVDFSVSGRLLFAGYNDYTINVWDSL 144
+K+V KK S++F S D +++ + GY++YT + + SL
Sbjct: 711 NKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSL 755
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 190 DKEVACYKKDSILF--GATSVDFSVSGRLLFAGYNDYTINVWDSL 232
+K+V KK S++F S D +++ + GY++YT + + SL
Sbjct: 711 NKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSL 755
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
T + F SG L + D + +W L+GH V+ + + G S S D
Sbjct: 140 TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD 199
Query: 90 TTLR 93
T+R
Sbjct: 200 GTIR 203
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 118 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 177
T + F SG L + D + +W L+GH V+ + + G S S D
Sbjct: 140 TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD 199
Query: 178 TTLR 181
T+R
Sbjct: 200 GTIR 203
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 206 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265
T + F SG L + D + +W L+GH V+ + + G S S D
Sbjct: 140 TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD 199
Query: 266 TTLR 269
T+R
Sbjct: 200 GTIR 203
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
T + F SG L + D + +W L+GH V+ + + G S S D
Sbjct: 143 TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD 202
Query: 90 TTLR 93
T+R
Sbjct: 203 GTIR 206
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 118 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 177
T + F SG L + D + +W L+GH V+ + + G S S D
Sbjct: 143 TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD 202
Query: 178 TTLR 181
T+R
Sbjct: 203 GTIR 206
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 206 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265
T + F SG L + D + +W L+GH V+ + + G S S D
Sbjct: 143 TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD 202
Query: 266 TTLR 269
T+R
Sbjct: 203 GTIR 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,547,038
Number of Sequences: 62578
Number of extensions: 387969
Number of successful extensions: 1511
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 379
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)