Query psy4754
Match_columns 304
No_of_seqs 172 out of 1285
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 16:50:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 7E-47 2.4E-51 328.4 36.2 264 2-273 56-319 (321)
2 1got_B GT-beta; complex (GTP-b 100.0 1.1E-45 3.7E-50 323.3 37.3 262 2-272 75-340 (340)
3 1vyh_C Platelet-activating fac 100.0 4.4E-46 1.5E-50 333.9 35.2 262 2-273 128-409 (410)
4 2pbi_B Guanine nucleotide-bind 100.0 1.7E-44 5.9E-49 317.5 36.2 263 2-272 84-354 (354)
5 2ynn_A Coatomer subunit beta'; 100.0 1.9E-44 6.5E-49 310.6 34.8 249 25-280 12-264 (304)
6 1vyh_C Platelet-activating fac 100.0 1.2E-43 4.1E-48 318.1 36.0 267 25-303 107-394 (410)
7 1erj_A Transcriptional repress 100.0 9.4E-43 3.2E-47 310.5 37.9 264 3-275 84-389 (393)
8 3ow8_A WD repeat-containing pr 100.0 1.1E-42 3.9E-47 301.9 36.4 269 23-303 29-304 (321)
9 1nr0_A Actin interacting prote 100.0 1E-42 3.5E-47 327.2 38.8 292 2-302 168-594 (611)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.7E-43 2.6E-47 305.8 35.2 272 2-278 36-338 (345)
11 3frx_A Guanine nucleotide-bind 100.0 1.7E-42 5.9E-47 300.4 37.0 263 2-275 38-317 (319)
12 3iz6_a 40S ribosomal protein R 100.0 9.1E-44 3.1E-48 315.7 29.2 268 2-275 86-375 (380)
13 4gqb_B Methylosome protein 50; 100.0 2.5E-43 8.4E-48 309.0 31.2 241 27-277 83-333 (344)
14 2ynn_A Coatomer subunit beta'; 100.0 4.4E-42 1.5E-46 295.8 36.9 261 2-273 33-300 (304)
15 2xzm_R RACK1; ribosome, transl 100.0 2E-42 6.7E-47 302.8 35.1 265 2-275 47-340 (343)
16 2hes_X YDR267CP; beta-propelle 100.0 4.1E-42 1.4E-46 299.4 35.4 266 2-275 32-328 (330)
17 4g56_B MGC81050 protein; prote 100.0 2.2E-42 7.6E-47 304.4 31.7 265 3-277 69-345 (357)
18 1nr0_A Actin interacting prote 100.0 6.5E-42 2.2E-46 321.7 35.6 267 3-277 38-357 (611)
19 4ery_A WD repeat-containing pr 100.0 2.8E-41 9.6E-46 291.2 36.2 265 2-274 43-311 (312)
20 4gqb_B Methylosome protein 50; 100.0 3.3E-42 1.1E-46 301.8 30.7 280 6-302 16-312 (344)
21 1got_B GT-beta; complex (GTP-b 100.0 6.8E-41 2.3E-45 292.8 38.1 267 24-303 53-326 (340)
22 4g56_B MGC81050 protein; prote 100.0 3.8E-42 1.3E-46 302.9 28.2 286 2-303 24-326 (357)
23 3frx_A Guanine nucleotide-bind 100.0 3.3E-40 1.1E-44 286.1 37.1 271 23-304 14-301 (319)
24 2ymu_A WD-40 repeat protein; u 100.0 2.1E-40 7.2E-45 308.3 36.6 255 2-272 323-577 (577)
25 3iz6_a 40S ribosomal protein R 100.0 1.5E-41 5.1E-46 301.5 27.2 288 6-303 48-358 (380)
26 4gga_A P55CDC, cell division c 100.0 4.2E-40 1.4E-44 295.8 36.9 263 3-276 124-396 (420)
27 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.9E-40 1.7E-44 288.0 36.3 241 28-276 18-284 (345)
28 4ery_A WD repeat-containing pr 100.0 6.2E-40 2.1E-44 282.8 35.7 269 23-302 20-292 (312)
29 2pbi_B Guanine nucleotide-bind 100.0 7.5E-40 2.6E-44 287.9 36.5 269 24-304 62-341 (354)
30 2pm7_B Protein transport prote 100.0 5.8E-40 2E-44 281.6 32.9 243 24-274 7-284 (297)
31 3dm0_A Maltose-binding peripla 100.0 1.1E-39 3.9E-44 310.6 36.6 265 2-274 403-692 (694)
32 2ymu_A WD-40 repeat protein; u 100.0 4.4E-39 1.5E-43 299.4 39.4 282 2-304 282-564 (577)
33 3k26_A Polycomb protein EED; W 100.0 4.5E-40 1.5E-44 288.2 28.6 265 2-274 42-365 (366)
34 2pm9_A Protein WEB1, protein t 100.0 2.2E-40 7.7E-45 295.6 26.8 270 3-278 44-340 (416)
35 3zwl_B Eukaryotic translation 100.0 9.7E-39 3.3E-43 279.7 36.4 272 2-283 52-354 (369)
36 2hes_X YDR267CP; beta-propelle 100.0 1.3E-38 4.6E-43 277.2 37.0 242 24-276 12-281 (330)
37 4ggc_A P55CDC, cell division c 100.0 2E-38 6.9E-43 272.8 37.3 262 3-275 44-315 (318)
38 4aez_A CDC20, WD repeat-contai 100.0 1.2E-38 4E-43 284.6 35.5 264 2-277 111-382 (401)
39 2xzm_R RACK1; ribosome, transl 100.0 3.8E-38 1.3E-42 275.6 37.6 270 24-304 19-324 (343)
40 1sq9_A Antiviral protein SKI8; 100.0 3.2E-39 1.1E-43 286.6 31.1 268 2-276 34-396 (397)
41 3bg1_A Protein SEC13 homolog; 100.0 7.3E-40 2.5E-44 283.5 26.2 243 25-275 12-293 (316)
42 1r5m_A SIR4-interacting protei 100.0 2.5E-38 8.6E-43 282.2 36.8 265 2-274 66-424 (425)
43 1erj_A Transcriptional repress 100.0 1.9E-38 6.4E-43 282.7 35.6 268 6-281 42-347 (393)
44 4aow_A Guanine nucleotide-bind 100.0 7.2E-38 2.5E-42 271.9 38.1 267 2-277 59-339 (340)
45 3i2n_A WD repeat-containing pr 100.0 3.2E-39 1.1E-43 282.0 29.4 266 2-275 42-353 (357)
46 1gxr_A ESG1, transducin-like e 100.0 1.7E-37 5.9E-42 268.7 37.5 261 2-273 70-335 (337)
47 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-39 7.7E-44 298.1 26.2 266 2-276 181-518 (524)
48 4h5i_A Guanine nucleotide-exch 100.0 1.5E-38 5.1E-43 280.8 30.0 266 3-278 42-346 (365)
49 3vl1_A 26S proteasome regulato 100.0 1.3E-38 4.4E-43 284.9 29.9 262 3-276 77-366 (420)
50 1gxr_A ESG1, transducin-like e 100.0 1.6E-37 5.6E-42 268.9 35.3 264 25-303 50-320 (337)
51 3ei3_B DNA damage-binding prot 100.0 2.3E-38 7.9E-43 280.4 29.9 262 2-275 94-382 (383)
52 1k8k_C P40, ARP2/3 complex 41 100.0 1.8E-37 6.1E-42 272.6 34.2 266 2-277 28-363 (372)
53 3f3f_A Nucleoporin SEH1; struc 100.0 2.8E-37 9.7E-42 267.6 33.5 245 24-276 9-338 (351)
54 4aow_A Guanine nucleotide-bind 100.0 4.1E-36 1.4E-40 260.8 38.2 289 6-304 18-321 (340)
55 4a11_B DNA excision repair pro 100.0 1.6E-37 5.5E-42 275.8 29.9 266 3-277 22-367 (408)
56 2pm9_A Protein WEB1, protein t 100.0 3.2E-38 1.1E-42 281.7 24.1 266 2-275 87-414 (416)
57 3dwl_C Actin-related protein 2 100.0 1.7E-38 5.7E-43 280.4 21.9 237 27-272 12-279 (377)
58 3vl1_A 26S proteasome regulato 100.0 2.2E-37 7.6E-42 276.9 29.0 266 2-275 117-419 (420)
59 4e54_B DNA damage-binding prot 100.0 8.9E-38 3E-42 281.9 26.5 268 2-277 140-432 (435)
60 3dwl_C Actin-related protein 2 100.0 3.8E-38 1.3E-42 278.1 23.4 263 2-273 31-377 (377)
61 1k8k_C P40, ARP2/3 complex 41 100.0 8E-37 2.7E-41 268.5 31.6 244 25-275 7-274 (372)
62 3odt_A Protein DOA1; ubiquitin 100.0 5.4E-36 1.9E-40 256.9 35.4 257 2-277 37-298 (313)
63 3jrp_A Fusion protein of prote 100.0 1.3E-36 4.3E-41 267.4 31.4 244 24-275 9-287 (379)
64 3ei3_B DNA damage-binding prot 100.0 9.3E-37 3.2E-41 270.1 30.3 267 24-303 71-366 (383)
65 2j04_B YDR362CP, TAU91; beta p 100.0 4.4E-38 1.5E-42 289.5 22.3 229 41-276 176-429 (524)
66 2aq5_A Coronin-1A; WD40 repeat 100.0 2E-37 7E-42 276.4 25.7 269 2-277 55-344 (402)
67 3gre_A Serine/threonine-protei 100.0 1.4E-37 4.9E-42 280.0 24.7 266 2-272 84-437 (437)
68 3zwl_B Eukaryotic translation 100.0 1.4E-35 4.6E-40 259.7 36.5 270 20-303 26-329 (369)
69 3dw8_B Serine/threonine-protei 100.0 8.7E-37 3E-41 275.0 29.2 246 26-278 28-376 (447)
70 1r5m_A SIR4-interacting protei 100.0 7.7E-36 2.6E-40 266.1 34.6 260 6-277 27-363 (425)
71 3dm0_A Maltose-binding peripla 100.0 5.3E-36 1.8E-40 285.4 35.3 247 24-280 380-637 (694)
72 3v7d_B Cell division control p 100.0 1.1E-35 3.7E-40 269.7 35.5 259 2-277 140-423 (464)
73 4e54_B DNA damage-binding prot 100.0 1.1E-36 3.7E-41 274.8 27.6 270 27-304 120-415 (435)
74 3mkq_A Coatomer beta'-subunit; 100.0 3.6E-36 1.2E-40 290.4 33.0 246 25-277 12-261 (814)
75 1sq9_A Antiviral protein SKI8; 100.0 4.8E-36 1.6E-40 266.1 30.5 253 24-283 14-330 (397)
76 3gre_A Serine/threonine-protei 100.0 5E-36 1.7E-40 269.9 30.1 269 8-284 47-368 (437)
77 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.8E-35 2.3E-39 263.5 35.5 256 2-279 137-395 (445)
78 3i2n_A WD repeat-containing pr 100.0 1.3E-35 4.6E-40 259.0 29.8 244 25-277 17-293 (357)
79 2oaj_A Protein SNI1; WD40 repe 100.0 1.8E-35 6E-40 288.7 32.5 141 2-148 77-245 (902)
80 1yfq_A Cell cycle arrest prote 100.0 1.3E-35 4.4E-40 258.0 28.3 258 2-272 31-321 (342)
81 1p22_A F-BOX/WD-repeat protein 100.0 2.8E-35 9.5E-40 265.4 30.6 254 2-277 151-416 (435)
82 3sfz_A APAF-1, apoptotic pepti 100.0 3.4E-35 1.2E-39 295.8 34.4 247 23-275 612-913 (1249)
83 1pgu_A Actin interacting prote 100.0 2.7E-34 9.1E-39 268.5 37.4 289 2-302 181-597 (615)
84 3sfz_A APAF-1, apoptotic pepti 100.0 8E-35 2.7E-39 293.1 36.2 267 2-278 635-1037(1249)
85 3mmy_A MRNA export factor; mRN 100.0 7.4E-35 2.5E-39 254.9 31.2 242 24-272 37-343 (368)
86 3odt_A Protein DOA1; ubiquitin 100.0 2.3E-34 8E-39 246.7 33.3 259 24-302 16-279 (313)
87 3dw8_B Serine/threonine-protei 100.0 6.4E-35 2.2E-39 262.8 31.2 263 2-272 48-443 (447)
88 1yfq_A Cell cycle arrest prote 100.0 2.2E-35 7.5E-40 256.6 26.9 245 25-278 10-285 (342)
89 3k26_A Polycomb protein EED; W 100.0 1.2E-35 4.2E-40 259.9 25.2 272 25-304 17-350 (366)
90 2pm7_B Protein transport prote 100.0 7.8E-35 2.7E-39 249.7 28.2 235 62-304 3-269 (297)
91 3mkq_A Coatomer beta'-subunit; 100.0 2.2E-34 7.4E-39 278.0 34.0 262 2-274 33-301 (814)
92 3v7d_B Cell division control p 100.0 6.6E-34 2.3E-38 258.0 34.9 234 29-277 125-383 (464)
93 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1E-33 3.4E-38 255.8 34.7 258 2-277 177-444 (445)
94 3lrv_A PRE-mRNA-splicing facto 100.0 1.1E-34 3.9E-39 253.5 26.7 255 2-273 56-331 (343)
95 2xyi_A Probable histone-bindin 100.0 2E-34 6.7E-39 259.7 29.0 246 24-277 126-412 (430)
96 3jro_A Fusion protein of prote 100.0 6.9E-35 2.4E-39 280.0 27.6 244 24-275 7-285 (753)
97 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6E-34 2.1E-38 257.8 31.7 241 28-276 104-392 (450)
98 1pgu_A Actin interacting prote 100.0 1.3E-33 4.4E-38 263.8 34.6 246 26-281 18-289 (615)
99 2aq5_A Coronin-1A; WD40 repeat 100.0 3E-34 1E-38 255.9 28.4 242 29-277 37-301 (402)
100 1l0q_A Surface layer protein; 100.0 1.8E-32 6E-37 243.0 37.3 261 2-278 10-278 (391)
101 4h5i_A Guanine nucleotide-exch 100.0 5.6E-34 1.9E-38 251.5 27.2 224 2-233 102-343 (365)
102 2w18_A PALB2, fancn, partner a 100.0 8.9E-34 3.1E-38 242.9 27.2 242 2-273 61-355 (356)
103 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.7E-33 1.3E-37 252.7 32.6 239 27-273 5-337 (450)
104 3bg1_A Protein SEC13 homolog; 100.0 3.4E-34 1.2E-38 247.9 23.9 225 2-232 33-292 (316)
105 4aez_A CDC20, WD repeat-contai 100.0 6.9E-33 2.4E-37 247.2 31.0 260 29-303 96-363 (401)
106 4gq1_A NUP37; propeller, trans 100.0 7.9E-34 2.7E-38 252.9 24.7 229 33-267 96-382 (393)
107 1p22_A F-BOX/WD-repeat protein 100.0 8.9E-33 3E-37 249.0 31.6 232 26-277 133-367 (435)
108 2j04_A TAU60, YPL007P, hypothe 100.0 1.7E-33 5.7E-38 255.6 24.0 233 26-273 15-295 (588)
109 2oaj_A Protein SNI1; WD40 repe 100.0 3.5E-32 1.2E-36 265.5 31.8 239 25-273 16-310 (902)
110 3vu4_A KMHSV2; beta-propeller 100.0 6E-32 2E-36 237.6 29.2 247 8-276 3-272 (355)
111 3jrp_A Fusion protein of prote 100.0 4.4E-32 1.5E-36 238.4 27.5 238 59-304 2-271 (379)
112 3bws_A Protein LP49; two-domai 100.0 5.7E-31 2E-35 236.3 34.1 260 3-274 143-431 (433)
113 4gga_A P55CDC, cell division c 100.0 3.8E-31 1.3E-35 237.4 32.5 259 29-304 108-379 (420)
114 3lrv_A PRE-mRNA-splicing facto 100.0 1.8E-32 6E-37 239.6 22.9 232 33-277 43-294 (343)
115 3vu4_A KMHSV2; beta-propeller 100.0 3.7E-31 1.3E-35 232.5 30.5 254 3-275 39-336 (355)
116 4ggc_A P55CDC, cell division c 100.0 6.9E-31 2.4E-35 225.7 31.1 261 29-304 28-299 (318)
117 3f3f_A Nucleoporin SEH1; struc 100.0 2.5E-31 8.5E-36 230.1 28.3 231 2-238 31-342 (351)
118 4a11_B DNA excision repair pro 100.0 1.8E-30 6.2E-35 230.3 29.5 260 2-273 64-403 (408)
119 2j04_A TAU60, YPL007P, hypothe 100.0 6.4E-32 2.2E-36 245.2 19.6 259 5-303 65-344 (588)
120 3bws_A Protein LP49; two-domai 100.0 9.1E-30 3.1E-34 228.5 33.3 261 28-303 124-414 (433)
121 3jro_A Fusion protein of prote 100.0 5.1E-31 1.7E-35 253.2 23.4 228 2-233 29-285 (753)
122 3mmy_A MRNA export factor; mRN 100.0 4.7E-30 1.6E-34 224.4 26.4 241 53-304 24-330 (368)
123 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.8E-29 1.6E-33 223.6 27.2 263 5-277 94-389 (415)
124 1l0q_A Surface layer protein; 100.0 5E-28 1.7E-32 214.3 33.3 248 39-303 3-257 (391)
125 2xyi_A Probable histone-bindin 100.0 1E-28 3.5E-33 222.3 28.5 222 2-233 149-410 (430)
126 4gq1_A NUP37; propeller, trans 100.0 2.3E-29 7.9E-34 224.0 21.3 223 2-231 109-387 (393)
127 1nir_A Nitrite reductase; hemo 100.0 5.5E-27 1.9E-31 216.9 32.4 294 2-303 157-492 (543)
128 2ojh_A Uncharacterized protein 100.0 2.8E-27 9.6E-32 200.3 27.6 253 2-266 20-293 (297)
129 2w18_A PALB2, fancn, partner a 100.0 5.7E-27 2E-31 200.8 26.1 273 16-304 27-341 (356)
130 1ri6_A Putative isomerase YBHE 100.0 4.2E-26 1.4E-30 197.6 31.7 263 2-274 13-307 (343)
131 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.8E-26 1.7E-30 204.1 32.1 240 4-256 159-409 (415)
132 2ecf_A Dipeptidyl peptidase IV 100.0 1.2E-25 3.9E-30 215.3 30.4 290 5-303 65-438 (741)
133 3u4y_A Uncharacterized protein 99.9 3.2E-25 1.1E-29 191.8 29.5 263 2-277 18-306 (331)
134 1pby_B Quinohemoprotein amine 99.9 3.8E-25 1.3E-29 191.2 26.3 264 2-277 9-312 (337)
135 1xfd_A DIP, dipeptidyl aminope 99.9 2.7E-25 9.3E-30 212.0 27.1 271 2-275 35-393 (723)
136 3hfq_A Uncharacterized protein 99.9 8.7E-24 3E-28 184.3 31.8 267 3-274 15-316 (347)
137 1nir_A Nitrite reductase; hemo 99.9 2.9E-24 9.9E-29 198.7 30.2 278 3-293 199-533 (543)
138 3vgz_A Uncharacterized protein 99.9 2.7E-23 9.3E-28 180.9 32.7 251 3-267 68-336 (353)
139 2ecf_A Dipeptidyl peptidase IV 99.9 8.1E-25 2.8E-29 209.4 24.4 265 28-303 38-393 (741)
140 1xfd_A DIP, dipeptidyl aminope 99.9 1E-24 3.4E-29 208.1 22.2 241 29-272 19-341 (723)
141 2z3z_A Dipeptidyl aminopeptida 99.9 3.6E-24 1.2E-28 203.9 25.8 286 6-303 46-414 (706)
142 3vgz_A Uncharacterized protein 99.9 3.6E-23 1.2E-27 180.1 29.4 265 28-303 42-327 (353)
143 2z3z_A Dipeptidyl aminopeptida 99.9 2.4E-23 8.2E-28 198.2 28.2 266 3-277 100-437 (706)
144 2ojh_A Uncharacterized protein 99.9 9.1E-24 3.1E-28 178.6 22.4 225 43-277 17-260 (297)
145 1jmx_B Amine dehydrogenase; ox 99.9 1.4E-22 4.9E-27 175.9 25.7 237 31-277 4-327 (349)
146 3scy_A Hypothetical bacterial 99.9 4.4E-21 1.5E-25 168.1 35.2 263 3-274 26-336 (361)
147 3u4y_A Uncharacterized protein 99.9 2.6E-22 9E-27 173.5 26.5 236 33-278 4-255 (331)
148 1k32_A Tricorn protease; prote 99.9 1.4E-22 4.7E-27 201.1 26.5 280 3-303 182-485 (1045)
149 1ri6_A Putative isomerase YBHE 99.9 5.1E-22 1.7E-26 171.9 25.9 225 40-274 7-261 (343)
150 3o4h_A Acylamino-acid-releasin 99.9 4.9E-23 1.7E-27 192.0 20.7 233 27-273 22-274 (582)
151 1k32_A Tricorn protease; prote 99.9 3.2E-22 1.1E-26 198.5 24.5 254 3-273 223-500 (1045)
152 1z68_A Fibroblast activation p 99.9 2.5E-22 8.4E-27 191.7 21.9 264 2-275 34-391 (719)
153 2oit_A Nucleoporin 214KDA; NH2 99.9 5.1E-22 1.8E-26 178.8 21.9 201 28-234 38-279 (434)
154 3o4h_A Acylamino-acid-releasin 99.9 4.6E-21 1.6E-25 178.7 24.8 248 3-274 43-314 (582)
155 1pby_B Quinohemoprotein amine 99.9 8.9E-21 3E-25 163.6 24.6 249 39-303 2-293 (337)
156 1jmx_B Amine dehydrogenase; ox 99.9 2E-20 6.9E-25 162.3 25.5 226 2-243 19-335 (349)
157 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.2E-20 1.1E-24 163.2 26.6 267 4-276 14-342 (365)
158 3hfq_A Uncharacterized protein 99.9 1.8E-19 6.2E-24 156.9 29.5 251 46-303 14-299 (347)
159 2oit_A Nucleoporin 214KDA; NH2 99.9 9.2E-21 3.1E-25 170.6 20.5 213 48-275 23-278 (434)
160 1z68_A Fibroblast activation p 99.9 2.1E-21 7.1E-26 185.3 16.3 239 30-275 19-346 (719)
161 3fvz_A Peptidyl-glycine alpha- 99.9 1.3E-19 4.5E-24 157.1 26.2 243 28-275 25-322 (329)
162 3pe7_A Oligogalacturonate lyas 99.9 2.9E-20 9.9E-25 164.1 21.9 269 7-281 13-335 (388)
163 2oiz_A Aromatic amine dehydrog 99.9 6E-19 2.1E-23 155.0 28.5 283 2-302 29-360 (361)
164 1q7f_A NHL, brain tumor CG1071 99.9 2.4E-18 8.2E-23 145.8 30.7 237 28-275 31-280 (286)
165 4a5s_A Dipeptidyl peptidase 4 99.9 2.9E-20 1E-24 178.2 20.8 243 29-277 19-355 (740)
166 3scy_A Hypothetical bacterial 99.8 3.3E-18 1.1E-22 149.7 29.9 250 45-303 24-319 (361)
167 3pe7_A Oligogalacturonate lyas 99.8 1.2E-18 4.1E-23 153.7 26.5 263 5-274 61-381 (388)
168 2gop_A Trilobed protease; beta 99.8 7.3E-18 2.5E-22 146.5 27.4 244 3-274 42-330 (347)
169 4a5s_A Dipeptidyl peptidase 4 99.8 4.1E-18 1.4E-22 163.3 25.2 255 3-264 35-383 (740)
170 3c5m_A Oligogalacturonate lyas 99.8 6.4E-19 2.2E-23 155.6 17.6 267 8-281 14-335 (396)
171 3azo_A Aminopeptidase; POP fam 99.8 6.4E-18 2.2E-22 159.6 23.8 263 3-273 46-365 (662)
172 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.1E-17 1.1E-21 144.1 26.5 221 48-274 14-290 (365)
173 3c5m_A Oligogalacturonate lyas 99.8 5.5E-18 1.9E-22 149.5 21.2 260 2-273 58-380 (396)
174 3azo_A Aminopeptidase; POP fam 99.8 2.5E-17 8.4E-22 155.6 25.8 242 27-273 24-321 (662)
175 3e5z_A Putative gluconolactona 99.8 1.4E-16 4.9E-21 135.6 27.6 229 29-271 30-283 (296)
176 2dg1_A DRP35, lactonase; beta 99.8 1.2E-15 3.9E-20 132.0 32.6 232 28-265 46-300 (333)
177 2xdw_A Prolyl endopeptidase; a 99.8 3E-16 1E-20 149.6 28.4 248 28-277 126-416 (710)
178 3dsm_A Uncharacterized protein 99.8 6.3E-16 2.2E-20 133.9 27.8 260 3-274 16-301 (328)
179 2gop_A Trilobed protease; beta 99.8 3.4E-16 1.2E-20 135.9 25.4 220 29-275 17-291 (347)
180 1q7f_A NHL, brain tumor CG1071 99.8 1.2E-15 4E-20 129.1 27.7 223 2-234 49-281 (286)
181 1rwi_B Serine/threonine-protei 99.8 8.3E-16 2.8E-20 128.7 25.5 241 28-277 25-266 (270)
182 2oiz_A Aromatic amine dehydrog 99.7 1E-15 3.5E-20 134.4 26.0 245 3-257 80-360 (361)
183 2bkl_A Prolyl endopeptidase; m 99.7 5.1E-16 1.7E-20 147.7 22.6 245 27-277 121-399 (695)
184 2dg1_A DRP35, lactonase; beta 99.7 2.6E-15 8.7E-20 129.8 24.9 236 29-275 8-263 (333)
185 3fvz_A Peptidyl-glycine alpha- 99.7 3.5E-15 1.2E-19 129.2 24.8 231 68-302 23-304 (329)
186 3no2_A Uncharacterized protein 99.7 8.6E-15 3E-19 123.7 26.5 214 37-263 4-231 (276)
187 2z2n_A Virginiamycin B lyase; 99.7 5.1E-13 1.8E-17 112.9 34.7 238 27-275 15-255 (299)
188 2z2n_A Virginiamycin B lyase; 99.7 3.7E-13 1.3E-17 113.8 33.7 253 3-270 35-291 (299)
189 1qks_A Cytochrome CD1 nitrite 99.7 8.1E-14 2.8E-18 129.0 31.5 266 2-276 175-478 (567)
190 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 6E-14 2.1E-18 119.8 28.0 238 29-275 20-299 (314)
191 2xdw_A Prolyl endopeptidase; a 99.7 9.1E-14 3.1E-18 132.5 27.6 223 5-235 152-416 (710)
192 3dsm_A Uncharacterized protein 99.6 9.2E-14 3.2E-18 120.2 24.5 233 3-252 63-319 (328)
193 3no2_A Uncharacterized protein 99.6 6.4E-13 2.2E-17 112.1 29.0 230 2-242 13-261 (276)
194 1yr2_A Prolyl oligopeptidase; 99.6 7.5E-14 2.6E-18 133.7 24.9 243 28-276 164-442 (741)
195 2qc5_A Streptogramin B lactona 99.6 3.3E-12 1.1E-16 108.0 32.5 257 2-273 39-298 (300)
196 3hrp_A Uncharacterized protein 99.6 6.8E-13 2.3E-17 118.3 29.4 239 28-273 132-408 (409)
197 2qc5_A Streptogramin B lactona 99.6 6E-12 2E-16 106.4 33.7 240 26-276 19-261 (300)
198 2mad_H Methylamine dehydrogena 99.6 6.8E-12 2.3E-16 110.4 32.5 256 5-277 48-352 (373)
199 1rwi_B Serine/threonine-protei 99.6 7.4E-13 2.5E-17 110.6 23.5 222 2-235 44-266 (270)
200 3g4e_A Regucalcin; six bladed 99.6 6.7E-12 2.3E-16 106.9 29.8 225 29-263 15-260 (297)
201 3e5z_A Putative gluconolactona 99.6 7.8E-13 2.7E-17 112.3 23.7 206 59-276 18-247 (296)
202 1qks_A Cytochrome CD1 nitrite 99.6 3.3E-12 1.1E-16 118.2 29.6 228 36-275 165-421 (567)
203 2bkl_A Prolyl endopeptidase; m 99.6 4.9E-13 1.7E-17 127.2 23.9 231 35-274 76-348 (695)
204 3sjl_D Methylamine dehydrogena 99.5 7.6E-12 2.6E-16 109.5 26.1 279 3-300 58-384 (386)
205 2qe8_A Uncharacterized protein 99.5 3.8E-12 1.3E-16 110.7 24.0 239 28-272 18-318 (343)
206 2ghs_A AGR_C_1268P; regucalcin 99.5 1.3E-10 4.3E-15 100.4 30.0 221 29-263 51-290 (326)
207 1yr2_A Prolyl oligopeptidase; 99.5 3E-11 1E-15 115.7 27.2 231 35-274 115-392 (741)
208 3iuj_A Prolyl endopeptidase; h 99.5 1E-11 3.5E-16 118.1 23.7 239 28-276 130-406 (693)
209 3dr2_A Exported gluconolactona 99.5 4.7E-11 1.6E-15 101.9 25.1 227 29-270 47-302 (305)
210 3c75_H MADH, methylamine dehyd 99.5 3.1E-11 1.1E-15 107.3 24.6 259 4-277 99-404 (426)
211 1xip_A Nucleoporin NUP159; bet 99.5 2.7E-12 9.4E-17 112.7 17.2 170 70-261 39-230 (388)
212 1mda_H Methylamine dehydrogena 99.4 3.4E-11 1.2E-15 105.3 21.9 252 5-277 47-348 (368)
213 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 3.6E-10 1.2E-14 96.2 25.7 221 3-233 45-299 (314)
214 3sjl_D Methylamine dehydrogena 99.4 4.1E-10 1.4E-14 98.6 24.9 243 3-255 108-384 (386)
215 1xip_A Nucleoporin NUP159; bet 99.4 3.3E-11 1.1E-15 105.8 18.0 173 28-219 39-230 (388)
216 3g4e_A Regucalcin; six bladed 99.4 1.4E-09 4.8E-14 92.4 26.8 206 2-221 33-260 (297)
217 3hrp_A Uncharacterized protein 99.3 1.1E-09 3.6E-14 97.6 25.8 218 2-231 150-408 (409)
218 2hz6_A Endoplasmic reticulum t 99.3 3E-12 1E-16 112.6 8.3 206 37-258 8-217 (369)
219 2mad_H Methylamine dehydrogena 99.3 9.4E-09 3.2E-13 90.3 30.2 225 3-240 96-357 (373)
220 2ece_A 462AA long hypothetical 99.3 2.4E-08 8.2E-13 88.4 29.4 223 36-263 93-399 (462)
221 2ghs_A AGR_C_1268P; regucalcin 99.2 3.8E-08 1.3E-12 84.7 28.4 203 3-221 70-290 (326)
222 3c75_H MADH, methylamine dehyd 99.2 4.7E-09 1.6E-13 93.4 22.0 226 3-240 148-409 (426)
223 3iuj_A Prolyl endopeptidase; h 99.2 6.8E-09 2.3E-13 98.6 24.0 221 4-235 155-407 (693)
224 1yiq_A Quinohemoprotein alcoho 99.2 1.2E-08 4.1E-13 96.8 24.3 274 3-283 79-513 (689)
225 1kb0_A Quinohemoprotein alcoho 99.1 5.8E-09 2E-13 98.7 21.9 255 2-262 136-537 (677)
226 2qe8_A Uncharacterized protein 99.1 3.9E-09 1.3E-13 91.6 18.8 200 69-273 17-276 (343)
227 1npe_A Nidogen, entactin; glyc 99.1 5.7E-07 1.9E-11 74.8 30.3 241 4-257 10-263 (267)
228 3dr2_A Exported gluconolactona 99.1 5.5E-08 1.9E-12 82.7 24.0 203 59-276 35-268 (305)
229 1yiq_A Quinohemoprotein alcoho 99.1 1.5E-08 5.2E-13 96.1 22.3 255 2-261 129-534 (689)
230 1fwx_A Nitrous oxide reductase 99.1 2.5E-08 8.6E-13 91.2 21.8 236 37-283 100-439 (595)
231 2ece_A 462AA long hypothetical 99.1 8.9E-08 3E-12 84.8 24.3 216 2-221 104-399 (462)
232 1kb0_A Quinohemoprotein alcoho 99.0 5.8E-08 2E-12 91.9 23.4 269 3-280 86-512 (677)
233 2iwa_A Glutamine cyclotransfer 99.0 1.3E-07 4.5E-12 78.5 21.9 208 59-275 10-237 (266)
234 1mda_H Methylamine dehydrogena 99.0 1.8E-08 6E-13 88.1 17.4 235 3-254 95-366 (368)
235 2iwa_A Glutamine cyclotransfer 99.0 1.3E-07 4.3E-12 78.6 21.1 193 29-232 23-236 (266)
236 3nol_A Glutamine cyclotransfer 99.0 1.7E-07 5.7E-12 77.2 21.2 182 29-221 45-243 (262)
237 2p4o_A Hypothetical protein; p 99.0 1.6E-06 5.6E-11 73.7 27.9 225 29-264 34-277 (306)
238 3hxj_A Pyrrolo-quinoline quino 99.0 1.5E-07 5E-12 80.5 21.5 218 38-275 107-324 (330)
239 2hz6_A Endoplasmic reticulum t 99.0 2.1E-10 7.3E-15 100.7 3.4 183 79-278 8-195 (369)
240 3q7m_A Lipoprotein YFGL, BAMB; 99.0 7E-07 2.4E-11 78.0 25.8 258 3-277 62-339 (376)
241 3q7m_A Lipoprotein YFGL, BAMB; 98.9 2E-06 6.9E-11 75.1 27.0 250 3-272 112-375 (376)
242 3nok_A Glutaminyl cyclase; bet 98.9 3.6E-07 1.2E-11 75.2 20.1 179 29-221 57-253 (268)
243 2fp8_A Strictosidine synthase; 98.9 9.4E-07 3.2E-11 75.6 24.0 236 29-277 21-315 (322)
244 1fwx_A Nitrous oxide reductase 98.9 1.6E-07 5.5E-12 85.9 19.3 192 79-277 100-363 (595)
245 1k3i_A Galactose oxidase precu 98.9 3E-07 1E-11 86.7 21.8 240 31-275 190-497 (656)
246 3nol_A Glutamine cyclotransfer 98.9 7.7E-07 2.6E-11 73.2 21.3 192 60-262 33-243 (262)
247 1k3i_A Galactose oxidase precu 98.9 1.9E-07 6.5E-12 88.1 19.7 277 5-284 220-553 (656)
248 3hxj_A Pyrrolo-quinoline quino 98.9 3.6E-07 1.2E-11 78.0 19.6 244 3-273 39-282 (330)
249 3mbr_X Glutamine cyclotransfer 98.8 4.9E-06 1.7E-10 67.8 22.6 181 29-221 23-222 (243)
250 3tc9_A Hypothetical hydrolase; 98.7 9.2E-06 3.1E-10 72.6 24.9 236 29-273 139-428 (430)
251 1npe_A Nidogen, entactin; glyc 98.7 7E-05 2.4E-09 62.0 29.3 227 39-276 2-239 (267)
252 1ijq_A LDL receptor, low-densi 98.6 0.00015 5E-09 61.9 28.7 229 3-242 9-247 (316)
253 4hw6_A Hypothetical protein, I 98.6 1.5E-05 5.1E-10 71.3 23.3 235 29-273 141-431 (433)
254 3p5b_L Low density lipoprotein 98.6 0.00024 8.1E-09 62.7 30.8 239 4-252 92-339 (400)
255 3nok_A Glutaminyl cyclase; bet 98.6 3.7E-06 1.3E-10 69.2 17.4 189 60-262 45-253 (268)
256 1kv9_A Type II quinohemoprotei 98.6 5.2E-06 1.8E-10 78.4 20.6 253 2-260 125-516 (668)
257 2ad6_A Methanol dehydrogenase 98.6 2.1E-05 7E-10 72.9 23.8 254 2-262 123-524 (571)
258 3mbr_X Glutamine cyclotransfer 98.6 3E-05 1E-09 63.1 21.6 192 60-262 11-222 (243)
259 1kv9_A Type II quinohemoprotei 98.6 9.6E-06 3.3E-10 76.6 21.3 270 3-281 75-494 (668)
260 3v65_B Low-density lipoprotein 98.5 0.00015 5.3E-09 63.6 27.0 237 4-252 96-337 (386)
261 2xe4_A Oligopeptidase B; hydro 98.5 1.1E-05 3.8E-10 77.2 19.6 198 28-231 175-398 (751)
262 3v64_C Agrin; beta propeller, 98.4 0.00066 2.3E-08 58.7 29.9 236 4-252 53-294 (349)
263 3kya_A Putative phosphatase; s 98.4 0.00072 2.5E-08 61.0 28.7 242 29-277 141-477 (496)
264 3v65_B Low-density lipoprotein 98.4 0.001 3.6E-08 58.3 29.9 237 30-276 80-319 (386)
265 2fp8_A Strictosidine synthase; 98.4 0.00086 2.9E-08 57.0 27.6 194 29-232 82-312 (322)
266 2ad6_A Methanol dehydrogenase 98.4 0.00025 8.7E-09 65.6 24.9 272 3-283 72-502 (571)
267 4a2l_A BT_4663, two-component 98.3 0.0023 8E-08 61.4 33.3 255 5-275 194-480 (795)
268 1w6s_A Methanol dehydrogenase 98.3 0.00034 1.2E-08 65.0 25.2 274 3-283 72-511 (599)
269 3v64_C Agrin; beta propeller, 98.3 0.0012 4.1E-08 57.0 29.7 235 29-273 36-273 (349)
270 3qqz_A Putative uncharacterize 98.3 0.00085 2.9E-08 55.2 24.6 202 63-270 21-248 (255)
271 1w6s_A Methanol dehydrogenase 98.3 0.00023 7.7E-09 66.2 22.9 254 2-262 129-533 (599)
272 2xe4_A Oligopeptidase B; hydro 98.3 8.7E-05 3E-09 71.0 20.5 197 70-272 175-395 (751)
273 3sov_A LRP-6, low-density lipo 98.2 0.0015 5.1E-08 55.7 25.6 228 4-242 13-247 (318)
274 3m0c_C LDL receptor, low-densi 98.2 0.0028 9.5E-08 60.8 29.9 227 5-241 405-640 (791)
275 1n7d_A LDL receptor, low-densi 98.2 1.4E-05 4.7E-10 75.9 13.9 240 4-253 386-634 (699)
276 4a2l_A BT_4663, two-component 98.2 0.0042 1.5E-07 59.6 34.7 252 6-274 284-570 (795)
277 1flg_A Protein (quinoprotein e 98.2 0.0024 8.1E-08 59.2 28.1 271 5-283 79-524 (582)
278 1flg_A Protein (quinoprotein e 98.2 0.0014 4.7E-08 60.8 25.7 262 3-271 126-557 (582)
279 2p4o_A Hypothetical protein; p 98.1 0.0028 9.7E-08 53.4 25.7 210 2-223 51-278 (306)
280 3qqz_A Putative uncharacterize 98.1 0.003 1E-07 51.9 24.5 198 27-230 27-250 (255)
281 3tc9_A Hypothetical hydrolase; 98.0 0.00016 5.4E-09 64.5 15.4 153 117-274 139-300 (430)
282 4hw6_A Hypothetical protein, I 98.0 0.002 6.9E-08 57.4 22.3 218 4-231 162-431 (433)
283 3amr_A 3-phytase; beta-propell 98.0 0.0046 1.6E-07 53.0 22.7 197 38-240 40-271 (355)
284 3v9f_A Two-component system se 97.9 0.015 5.2E-07 55.6 31.2 222 28-262 364-600 (781)
285 3sre_A PON1, serum paraoxonase 97.9 0.004 1.4E-07 53.8 22.2 221 27-260 50-329 (355)
286 2ism_A Putative oxidoreductase 97.9 0.009 3.1E-07 51.6 26.6 229 29-263 33-333 (352)
287 3v9f_A Two-component system se 97.9 0.018 6.3E-07 55.1 30.0 255 5-273 231-522 (781)
288 2p9w_A MAL S 1 allergenic prot 97.9 0.0021 7.1E-08 54.7 19.1 154 119-275 17-215 (334)
289 2xbg_A YCF48-like protein; pho 97.9 0.0087 3E-07 51.0 23.7 227 28-271 81-318 (327)
290 3sov_A LRP-6, low-density lipo 97.9 0.0086 2.9E-07 50.9 25.2 220 47-275 12-238 (318)
291 3s94_A LRP-6, low-density lipo 97.8 0.023 8E-07 52.9 26.2 228 3-240 17-250 (619)
292 2vpj_A Kelch-like protein 12; 97.8 0.01 3.5E-07 49.6 21.9 220 4-233 31-278 (301)
293 2p9w_A MAL S 1 allergenic prot 97.7 0.014 4.8E-07 49.6 21.3 194 72-272 16-262 (334)
294 3sre_A PON1, serum paraoxonase 97.7 0.019 6.6E-07 49.5 22.8 226 71-304 52-328 (355)
295 1ijq_A LDL receptor, low-densi 97.6 0.023 7.7E-07 48.1 29.4 220 47-274 9-237 (316)
296 3s94_A LRP-6, low-density lipo 97.6 0.038 1.3E-06 51.5 24.9 224 46-276 16-244 (619)
297 3m0c_C LDL receptor, low-densi 97.6 0.052 1.8E-06 52.0 31.1 222 46-275 402-632 (791)
298 3ii7_A Kelch-like protein 7; p 97.6 0.022 7.6E-07 47.7 23.0 221 4-234 24-273 (306)
299 2xn4_A Kelch-like protein 2; s 97.6 0.023 7.9E-07 47.5 21.9 221 4-234 30-277 (302)
300 4a0p_A LRP6, LRP-6, low-densit 97.6 0.047 1.6E-06 51.0 30.6 225 4-240 15-244 (628)
301 3p5b_L Low density lipoprotein 97.6 0.032 1.1E-06 49.0 28.7 226 39-275 84-320 (400)
302 2vpj_A Kelch-like protein 12; 97.5 0.018 6.2E-07 48.1 19.7 220 37-266 14-264 (301)
303 3a9g_A Putative uncharacterize 97.4 0.051 1.8E-06 46.8 28.6 229 29-263 31-330 (354)
304 2xn4_A Kelch-like protein 2; s 97.4 0.043 1.5E-06 45.8 20.5 220 37-266 15-262 (302)
305 1zgk_A Kelch-like ECH-associat 97.4 0.041 1.4E-06 46.2 20.3 220 4-233 39-287 (308)
306 3ii7_A Kelch-like protein 7; p 97.4 0.05 1.7E-06 45.5 21.6 219 38-266 12-258 (306)
307 1n7d_A LDL receptor, low-densi 97.3 0.0027 9.1E-08 60.2 13.3 217 46-273 384-612 (699)
308 3kya_A Putative phosphatase; s 97.3 0.097 3.3E-06 47.2 21.8 198 71-273 141-408 (496)
309 4a0p_A LRP6, LRP-6, low-densit 97.2 0.13 4.4E-06 48.0 31.4 222 46-276 13-238 (628)
310 2g8s_A Glucose/sorbosone dehyd 97.2 0.084 2.9E-06 45.4 26.4 228 29-262 20-340 (353)
311 3amr_A 3-phytase; beta-propell 97.2 0.042 1.4E-06 47.1 17.9 170 126-302 40-243 (355)
312 2xbg_A YCF48-like protein; pho 97.1 0.1 3.6E-06 44.2 27.7 223 28-268 37-272 (327)
313 3das_A Putative oxidoreductase 97.1 0.11 3.8E-06 44.5 30.4 226 29-263 34-326 (347)
314 4asc_A Kelch repeat and BTB do 97.0 0.13 4.4E-06 43.2 21.4 185 2-193 11-225 (315)
315 1zgk_A Kelch-like ECH-associat 96.8 0.13 4.5E-06 43.0 17.9 224 33-266 20-273 (308)
316 2woz_A Kelch repeat and BTB do 96.8 0.18 6.3E-06 42.3 21.6 184 2-192 22-234 (318)
317 3a9g_A Putative uncharacterize 96.6 0.2 6.8E-06 43.1 17.7 140 117-263 31-216 (354)
318 2ism_A Putative oxidoreductase 96.6 0.31 1.1E-05 41.8 23.8 197 70-275 32-297 (352)
319 3das_A Putative oxidoreductase 96.5 0.32 1.1E-05 41.7 18.3 141 117-262 34-219 (347)
320 3pbp_A Nucleoporin NUP82; beta 96.3 0.28 9.7E-06 43.1 16.5 142 35-180 29-205 (452)
321 4asc_A Kelch repeat and BTB do 96.2 0.46 1.6E-05 39.7 23.0 216 40-265 7-253 (315)
322 1tl2_A L10, protein (tachylect 96.0 0.27 9.2E-06 39.2 13.7 155 117-283 43-219 (236)
323 2uvk_A YJHT; unknown function, 96.0 0.34 1.2E-05 41.3 16.0 40 225-266 286-327 (357)
324 2xzh_A Clathrin heavy chain 1; 95.9 0.69 2.4E-05 39.2 29.0 252 5-269 50-326 (365)
325 2g8s_A Glucose/sorbosone dehyd 95.9 0.46 1.6E-05 40.7 16.1 145 117-262 20-215 (353)
326 2zwa_A Leucine carboxyl methyl 95.9 1.2 4.2E-05 41.9 21.7 198 36-235 396-637 (695)
327 1tl2_A L10, protein (tachylect 95.8 0.22 7.5E-06 39.7 12.4 139 28-179 42-202 (236)
328 3pbp_A Nucleoporin NUP82; beta 95.7 0.98 3.3E-05 39.7 17.2 144 79-229 31-208 (452)
329 1cru_A Protein (soluble quinop 95.7 1 3.6E-05 40.0 20.1 104 117-221 29-162 (454)
330 2woz_A Kelch repeat and BTB do 95.5 0.89 3E-05 37.9 21.1 218 39-266 17-264 (318)
331 2zwa_A Leucine carboxyl methyl 95.5 0.98 3.3E-05 42.6 18.0 188 4-193 412-639 (695)
332 1cru_A Protein (soluble quinop 94.6 2.2 7.7E-05 37.8 19.9 51 29-79 29-87 (454)
333 2uvk_A YJHT; unknown function, 94.4 2 6.9E-05 36.3 20.3 51 37-89 65-128 (357)
334 3s25_A Hypothetical 7-bladed b 94.4 2 6.7E-05 35.9 15.6 197 36-262 23-240 (302)
335 2xzh_A Clathrin heavy chain 1; 93.9 2.7 9.1E-05 35.7 19.6 148 3-151 125-296 (365)
336 3sbq_A Nitrous-oxide reductase 93.8 0.64 2.2E-05 42.3 11.2 123 158-283 324-486 (638)
337 1bpo_A Protein (clathrin); cla 92.5 5.3 0.00018 35.3 28.5 254 4-269 48-325 (494)
338 1xi4_A Clathrin heavy chain; a 92.0 12 0.00041 38.3 18.1 249 5-267 49-323 (1630)
339 1bpo_A Protein (clathrin); cla 91.9 6.4 0.00022 34.8 21.0 148 3-151 124-295 (494)
340 3ei3_A DNA damage-binding prot 91.2 13 0.00045 37.2 31.6 244 4-265 492-757 (1158)
341 2wg3_C Hedgehog-interacting pr 90.2 8.6 0.00029 34.2 14.3 107 117-223 16-159 (463)
342 3ei3_A DNA damage-binding prot 89.7 18 0.00061 36.3 33.1 97 5-102 533-639 (1158)
343 2be1_A Serine/threonine-protei 87.6 1.4 4.6E-05 37.6 6.9 113 82-199 12-140 (339)
344 3q6k_A 43.2 kDa salivary prote 86.7 15 0.00051 31.7 22.4 232 29-263 28-342 (381)
345 3qhy_B Beta-lactamase inhibito 85.6 14 0.00046 30.3 15.8 222 28-275 25-246 (282)
346 2be1_A Serine/threonine-protei 82.7 21 0.00072 30.2 13.5 112 39-153 11-138 (339)
347 1xi4_A Clathrin heavy chain; a 81.2 20 0.00068 36.8 12.6 147 3-151 124-295 (1630)
348 3q6k_A 43.2 kDa salivary prote 78.4 32 0.0011 29.6 21.1 167 5-174 124-341 (381)
349 3s25_A Hypothetical 7-bladed b 72.4 40 0.0014 27.8 23.5 178 31-231 57-253 (302)
350 1zi0_A DNA gyrase subunit A; b 67.5 52 0.0018 27.2 20.8 186 36-231 1-224 (307)
351 1suu_A DNA gyrase subunit A; t 66.3 55 0.0019 27.1 22.3 188 35-232 5-230 (312)
352 3sbq_A Nitrous-oxide reductase 65.9 6.8 0.00023 35.8 4.7 77 205-282 325-415 (638)
353 3zwu_A Alkaline phosphatase PH 63.3 28 0.00095 32.0 8.4 57 30-86 479-548 (592)
354 4gq2_M Nucleoporin NUP120; bet 61.6 11 0.00039 36.8 5.8 35 29-63 238-272 (950)
355 4gq2_M Nucleoporin NUP120; bet 61.3 14 0.00047 36.2 6.4 36 205-240 238-273 (950)
356 3ott_A Two-component system se 57.4 1.3E+02 0.0043 28.2 25.8 225 29-269 375-621 (758)
357 3ott_A Two-component system se 56.5 1.3E+02 0.0044 28.1 28.3 226 28-273 23-258 (758)
358 4a9v_A PHOX; hydrolase, beta-p 55.9 80 0.0027 28.9 9.8 60 203-262 476-548 (592)
359 1wp5_A Topoisomerase IV; broke 52.9 1E+02 0.0034 25.7 18.6 187 36-231 3-223 (323)
360 4fhn_B Nucleoporin NUP120; pro 52.4 12 0.00039 37.6 4.2 35 29-63 240-274 (1139)
361 3zwu_A Alkaline phosphatase PH 52.2 68 0.0023 29.4 9.0 59 204-262 477-548 (592)
362 3l6v_A GYRA, DNA gyrase subuni 51.8 1.1E+02 0.0038 26.0 20.7 142 34-180 3-173 (370)
363 4fhn_B Nucleoporin NUP120; pro 51.3 14 0.00046 37.0 4.5 35 206-240 241-275 (1139)
364 4a9v_A PHOX; hydrolase, beta-p 49.5 63 0.0021 29.6 8.1 59 29-87 478-549 (592)
365 3f7f_A Nucleoporin NUP120; nuc 48.2 28 0.00095 32.8 5.7 34 29-64 224-257 (729)
366 2wg3_C Hedgehog-interacting pr 46.7 1.5E+02 0.0052 26.1 29.5 50 29-79 16-79 (463)
367 3uc1_A DNA gyrase subunit A; D 44.4 1.4E+02 0.0047 24.9 18.7 186 38-231 3-226 (327)
368 1suu_A DNA gyrase subunit A; t 43.4 1.4E+02 0.0047 24.6 14.2 143 124-271 6-177 (312)
369 3f7f_A Nucleoporin NUP120; nuc 43.4 30 0.001 32.6 5.1 31 211-241 228-258 (729)
370 3qhy_B Beta-lactamase inhibito 42.7 1.3E+02 0.0045 24.2 18.6 202 28-256 64-265 (282)
371 1zi0_A DNA gyrase subunit A; b 39.9 1.6E+02 0.0053 24.2 12.1 56 212-268 107-169 (307)
372 1wp5_A Topoisomerase IV; broke 27.3 2.6E+02 0.0091 23.1 11.7 141 124-269 3-168 (323)
373 3uc1_A DNA gyrase subunit A; D 27.3 2.7E+02 0.0091 23.1 16.4 103 37-143 108-226 (327)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7e-47 Score=328.44 Aligned_cols=264 Identities=18% Similarity=0.260 Sum_probs=238.8
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|||||+.+++....+....+...|.+++|++++.++++|+.|++|++||+.+++.+..+..|...+.+++|+|+++
T Consensus 56 ~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~ 135 (321)
T 3ow8_A 56 LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 135 (321)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSS
T ss_pred CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCC
Confidence 47899999999886655555566666799999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
+|++|+.|+.+ ++||+...+....+..+. ..+.+++|+|+++++++|+.|+.|++||+.+++.+.++.+|..+|.+
T Consensus 136 ~l~~g~~dg~v--~i~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 211 (321)
T 3ow8_A 136 YLATGTHVGKV--NIFGVESGKKEYSLDTRG--KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRS 211 (321)
T ss_dssp EEEEECTTSEE--EEEETTTCSEEEEEECSS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCE
T ss_pred EEEEEcCCCcE--EEEEcCCCceeEEecCCC--ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeE
Confidence 99999999995 789999887776655433 24678999999999999999999999999999888899999999999
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 241 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~ 241 (304)
++|+|++++|++++.|++| ++||+++.+....+..+. ..+.+++|+|++++|++|+.|++|++||+.+++++.++.
T Consensus 212 l~~spd~~~l~s~s~dg~i--~iwd~~~~~~~~~~~~h~--~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 287 (321)
T 3ow8_A 212 LTFSPDSQLLVTASDDGYI--KIYDVQHANLAGTLSGHA--SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF 287 (321)
T ss_dssp EEECTTSCEEEEECTTSCE--EEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEcCCCCEEEEEcCCCeE--EEEECCCcceeEEEcCCC--CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc
Confidence 9999999999999999996 699999888777776554 357899999999999999999999999999999999999
Q ss_pred ccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 242 GHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 242 ~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
+|.+.|++++|+|++.+|++++.|++|++||.
T Consensus 288 ~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999999999999999999985
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-45 Score=323.27 Aligned_cols=262 Identities=34% Similarity=0.546 Sum_probs=233.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc----eeeeeecCCcCcEEEEEEC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC----CRVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~----~~~~~~~~h~~~V~~l~~s 77 (304)
.|++|++||+.+++.+..++. +...|.+++|+|++++|++|+.|+.|++|++.+. .....+.+|.+.|.++.|+
T Consensus 75 ~Dg~v~iWd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (340)
T 1got_B 75 QDGKLIIWDSYTTNKVHAIPL--RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152 (340)
T ss_dssp TTTEEEEEETTTCCEEEEEEC--SSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE
T ss_pred CCCcEEEEECCCCCcceEeec--CCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEEC
Confidence 478999999999987766553 3455999999999999999999999999998764 3456678999999999999
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCccc
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 157 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~ 157 (304)
+++. +++++.|+++ ++||+.+++.+..+..+. ..+.++.|+|++.++++|+.|+.|++||+++...+..+.+|..
T Consensus 153 ~~~~-l~s~s~d~~i--~~wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~ 227 (340)
T 1got_B 153 DDNQ-IVTSSGDTTC--ALWDIETGQQTTTFTGHT--GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227 (340)
T ss_dssp ETTE-EEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS
T ss_pred CCCc-EEEEECCCcE--EEEECCCCcEEEEEcCCC--CceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC
Confidence 8765 8899999995 789999988887776543 2578999999999999999999999999999888888999999
Q ss_pred ceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceee
Q psy4754 158 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 237 (304)
Q Consensus 158 ~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~ 237 (304)
.|.+++|+|+++.|++|+.|+++ ++||++..+.+..+........+.+++|+|+|++|++|+.|+.|++||..++..+
T Consensus 228 ~v~~v~~~p~~~~l~s~s~d~~v--~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 305 (340)
T 1got_B 228 DINAICFFPNGNAFATGSDDATC--RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCE--EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CEEEEEEcCCCCEEEEEcCCCcE--EEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEe
Confidence 99999999999999999999996 6999998887777655544456899999999999999999999999999999999
Q ss_pred EEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 238 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 238 ~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
..+.+|.++|.+++|+|+|.+|+|||.|++|++|+
T Consensus 306 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999999996
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.4e-46 Score=333.92 Aligned_cols=262 Identities=23% Similarity=0.352 Sum_probs=237.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++....+. .|...|.+++|+|++++|++|+.||+|++||+.+++.++.+.+|...|.+++|+|+++
T Consensus 128 ~Dg~i~vwd~~~~~~~~~l~--~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~ 205 (410)
T 1vyh_C 128 EDATIKVWDYETGDFERTLK--GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205 (410)
T ss_dssp SSSCEEEEETTTCCCCEEEC--CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS
T ss_pred CCCeEEEEECCCCcEEEEEe--ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCC
Confidence 47899999999998766554 3445699999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
+|++|+.|+++ ++||+.++..+..+..+.. .+..+.+++++.++++|+.|+.|++||+.+......+.+|...|.+
T Consensus 206 ~l~s~s~D~~i--~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~ 281 (410)
T 1vyh_C 206 HIVSASRDKTI--KMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 281 (410)
T ss_dssp EEEEEETTSEE--EEEETTTCCEEEEEECCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEEEEeCCCeE--EEEECCCCcEEEEEeCCCc--cEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEE
Confidence 99999999995 7899999888877765432 4678899999999999999999999999988888889999999999
Q ss_pred EEEcCC--------------------CcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe
Q psy4754 162 LQVSPD--------------------GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 162 v~~sp~--------------------~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~ 221 (304)
++|+|+ +.++++|+.|+++ ++||+++++.+..+..+. ..+.+++|+|+|++|++|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i--~iwd~~~~~~~~~~~~h~--~~v~~v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI--KMWDVSTGMCLMTLVGHD--NWVRGVLFHSGGKFILSCA 357 (410)
T ss_dssp EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE--EEEETTTTEEEEEEECCS--SCEEEEEECSSSSCEEEEE
T ss_pred EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE--EEEECCCCceEEEEECCC--CcEEEEEEcCCCCEEEEEe
Confidence 999996 6689999999996 699999998888776654 3578999999999999999
Q ss_pred CCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 222 NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 222 ~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
.|++|++||..+++.+..+.+|...|++++|+|++.+|+|||.|++|++|+.
T Consensus 358 ~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 358 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999999999999999999999999999999999999999999999985
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.7e-44 Score=317.47 Aligned_cols=263 Identities=39% Similarity=0.563 Sum_probs=231.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc------eeeeeecCCcCcEEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC------CRVNHLMGHENRVSCLQ 75 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~------~~~~~~~~h~~~V~~l~ 75 (304)
.|++|++||..+++....+.. +...|.+++|+|+|.++++|+.|+.+++|++... .....+.+|.+.|.+++
T Consensus 84 ~Dg~v~vWd~~~~~~~~~~~~--~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 161 (354)
T 2pbi_B 84 QDGKVIVWDSFTTNKEHAVTM--PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACS 161 (354)
T ss_dssp TTSEEEEEETTTCCEEEEEEC--SSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEE
T ss_pred CCCeEEEEECCCCCcceEEec--CCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEE
Confidence 478999999999887665543 3345899999999999999999999999997532 33456678999999999
Q ss_pred ECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC--CCCEEEEEeCCCeEEEecCCccccceecc
Q psy4754 76 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLM 153 (304)
Q Consensus 76 ~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 153 (304)
|+|+++.|++++.|+++ ++||+.+++.+..+..+.. .+.++.++| ++.++++|+.|+.|++||+++++.+..+.
T Consensus 162 ~~~~~~~l~t~s~D~~v--~lwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~ 237 (354)
T 2pbi_B 162 FTNSDMQILTASGDGTC--ALWDVESGQLLQSFHGHGA--DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237 (354)
T ss_dssp ECSSSSEEEEEETTSEE--EEEETTTCCEEEEEECCSS--CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EeCCCCEEEEEeCCCcE--EEEeCCCCeEEEEEcCCCC--CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 99999999999999995 7899999888877765542 456777776 56899999999999999999998888899
Q ss_pred CcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q psy4754 154 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 154 ~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~ 233 (304)
+|...|.+++|+|++..|++|+.|+++ ++||++..+.+..+..+.....+.+++|+|+|++|++|+.|++|++||+.+
T Consensus 238 ~h~~~v~~v~~~p~~~~l~s~s~D~~v--~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~ 315 (354)
T 2pbi_B 238 THESDVNSVRYYPSGDAFASGSDDATC--RLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK 315 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCE--EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCCCeEEEEEeCCCCEEEEEeCCCeE--EEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC
Confidence 999999999999999999999999996 699999887777666554445678999999999999999999999999999
Q ss_pred ceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 234 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 234 ~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
+..+..+.+|.++|++++|+|+|++|++||.|++|++|+
T Consensus 316 ~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 316 GSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999999999999999995
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.9e-44 Score=310.56 Aligned_cols=249 Identities=21% Similarity=0.293 Sum_probs=217.6
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
+...|++++|+|++++|++|+.||+|++||+.+++.++.+..|..+|.+++|+|++++|++|+.|++| ++||+.+++.
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i--~vwd~~~~~~ 89 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI--RVFNYNTGEK 89 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE--EEEETTTCCE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE--EEEECCCCcE
Confidence 34459999999999999999999999999999999999999999999999999999999999999995 7899999888
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc-cceeccCcccceeEEEEcC-CCcEEEEeecCCceEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRC 182 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~sp-~~~~las~s~d~~i~i 182 (304)
+..++.+. ..+.+++|+|++.++++|+.|++|++||+.+.. ....+.+|...|.+++|+| ++..|++|+.|++|
T Consensus 90 ~~~~~~h~--~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v-- 165 (304)
T 2ynn_A 90 VVDFEAHP--DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV-- 165 (304)
T ss_dssp EEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE--
T ss_pred EEEEeCCC--CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE--
Confidence 87776654 357899999999999999999999999988763 4456789999999999999 67899999999996
Q ss_pred EEeeecCCceEEEeecCceeeeeeEEEEcC--CCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEE
Q psy4754 183 RLFDLRADKEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS 260 (304)
Q Consensus 183 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~la 260 (304)
++||++.......+.... ...+..+.|+| ++++|++|+.|++|++||+.+++++.++.+|...|.+++|+|++.+|+
T Consensus 166 ~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 166 KVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp EEEETTCSSCSEEEECCC-TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred EEEECCCCCccceeccCC-cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence 689998776544443221 12456777876 788999999999999999999999999999999999999999999999
Q ss_pred EeecCCeeeeccccccchhh
Q psy4754 261 SGSWDTTLRDEESKNRYMQY 280 (304)
Q Consensus 261 sgs~D~~i~~~~~~~~~~~~ 280 (304)
||+.|++|++|+.....+..
T Consensus 245 s~s~Dg~i~iWd~~~~~~~~ 264 (304)
T 2ynn_A 245 SGSEDGTLKIWNSSTYKVEK 264 (304)
T ss_dssp EEETTSCEEEEETTTCCEEE
T ss_pred EEcCCCeEEEEECCCCceee
Confidence 99999999999987654333
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-43 Score=318.11 Aligned_cols=267 Identities=24% Similarity=0.305 Sum_probs=233.3
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
|...|++++|+|++++|++|+.||+|++||..+++..+.+.+|.++|.+++|+|++++|++|+.|++| ++||+...+.
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i--~iwd~~~~~~ 184 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI--KLWDFQGFEC 184 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCC--CEEETTSSCE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE--EEEeCCCCce
Confidence 44459999999999999999999999999999999999999999999999999999999999999996 6899988877
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~ 184 (304)
+..+..+. ..+.++.|+|+++++++|+.|++|++||+.++.++.++.+|...|.++.++|+++.+++|+.|+++ ++
T Consensus 185 ~~~~~~h~--~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v--~v 260 (410)
T 1vyh_C 185 IRTMHGHD--HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV--RV 260 (410)
T ss_dssp EECCCCCS--SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE--EE
T ss_pred eEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE--EE
Confidence 76665443 357899999999999999999999999999998888999999999999999999999999999996 68
Q ss_pred eeecCCceEEEeecCceeeeeeEEEEcCC--------------------CCEEEEEeCCCcEEEEeCCCceeeEEeeccc
Q psy4754 185 FDLRADKEVACYKKDSILFGATSVDFSVS--------------------GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244 (304)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~~--------------------g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~ 244 (304)
||+++.+....+..+. ..+.+++|+|+ |.+|++|+.|++|++||+.++.++..+.+|.
T Consensus 261 wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~ 338 (410)
T 1vyh_C 261 WVVATKECKAELREHR--HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 338 (410)
T ss_dssp EETTTCCEEEEECCCS--SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred EECCCCceeeEecCCC--ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC
Confidence 9999888777776554 35789999996 6799999999999999999999999999999
Q ss_pred cceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCce-eEEEEEecCCcc
Q psy4754 245 NRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQ-GLTVYFQDRGRS 303 (304)
Q Consensus 245 ~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 303 (304)
.+|.+++|+|+|++|++|+.|++|++|+...+.....+. .+.. =..+.|.|++..
T Consensus 339 ~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~ 394 (410)
T 1vyh_C 339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN----AHEHFVTSLDFHKTAPY 394 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE----CCSSCEEEEEECSSSSC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc----CCCCcEEEEEEcCCCCE
Confidence 999999999999999999999999999986654333222 2222 245677776654
No 7
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.4e-43 Score=310.51 Aligned_cols=264 Identities=29% Similarity=0.407 Sum_probs=223.5
Q ss_pred CceeEEeeccccceEeeeecccc----------------ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSI----------------LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 66 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~----------------~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~ 66 (304)
++++++|++.+++.+..+..+.. ...|++++|+|+|++|++|+.|++|++||+.+++.+..+.+
T Consensus 84 ~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 163 (393)
T 1erj_A 84 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG 163 (393)
T ss_dssp BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc
Confidence 57899999999987655543211 11389999999999999999999999999999999999999
Q ss_pred CcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCc
Q psy4754 67 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLK 145 (304)
Q Consensus 67 h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~ 145 (304)
|...|.+++|+|++++|++|+.|+++ ++||+.+++....+..+. .+.+++++| ++.++++|+.|+.|++||+.+
T Consensus 164 h~~~v~~~~~~p~~~~l~s~s~d~~v--~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~ 238 (393)
T 1erj_A 164 HEQDIYSLDYFPSGDKLVSGSGDRTV--RIWDLRTGQCSLTLSIED---GVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238 (393)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEE--EEEETTTTEEEEEEECSS---CEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred CCCCEEEEEEcCCCCEEEEecCCCcE--EEEECCCCeeEEEEEcCC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 99999999999999999999999995 789999888776665432 467889998 899999999999999999988
Q ss_pred cccceec-------cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce------------EEEeecCceeeeee
Q psy4754 146 CCRVNHL-------MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE------------VACYKKDSILFGAT 206 (304)
Q Consensus 146 ~~~~~~~-------~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~------------~~~~~~~~~~~~~~ 206 (304)
+..+..+ .+|...|.+++|+|+++.+++++.|+++ ++||++.... ...+..+. ..+.
T Consensus 239 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v--~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~ 314 (393)
T 1erj_A 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV--KLWNLQNANNKSDSKTPNSGTCEVTYIGHK--DFVL 314 (393)
T ss_dssp CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE--EEEEC---------------CEEEEEECCS--SCEE
T ss_pred CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE--EEEECCCCCCcccccCCCCCcceEEEeccc--CcEE
Confidence 7665544 5799999999999999999999999996 6899875322 22333332 3478
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEcc------CCCEEEEeecCCeeeeccccc
Q psy4754 207 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP------DGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 207 ~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp------~g~~lasgs~D~~i~~~~~~~ 275 (304)
+++|+|++++|++|+.|+.|++||..++..+..+.+|.+.|.+++|+| ++.+|||||.|++||+|+...
T Consensus 315 ~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 315 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999999999999999999999999999999999999999999999986 688999999999999998754
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=301.89 Aligned_cols=269 Identities=22% Similarity=0.269 Sum_probs=228.7
Q ss_pred cccccceeEEEEcCC----CCEEEEeeCCCcEEEEeCCCce--eeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEE
Q psy4754 23 DSILFGATSVDFSVS----GRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 96 (304)
Q Consensus 23 ~~~~~~i~~~~~~~~----g~~l~tg~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~ 96 (304)
..|...|.+++|+|+ +.+|+||+.|++|++|+..+++ ....+.+|...|.+++|++++.+++|++.|+++ ++
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i--~l 106 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI--RL 106 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE--EE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE--EE
Confidence 345566999999985 5699999999999999987654 344688999999999999999999999999995 78
Q ss_pred eeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec
Q psy4754 97 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW 176 (304)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 176 (304)
||+.+++.+..+..+. ..+.+++|+|+++++++|+.|+.|++||+.+.+....+..|...|.+++|+|+++++++|+.
T Consensus 107 Wd~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~ 184 (321)
T 3ow8_A 107 WDLENGKQIKSIDAGP--VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI 184 (321)
T ss_dssp EETTTTEEEEEEECCT--TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCCEEEEEeCCC--ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC
Confidence 9999988887765543 24567899999999999999999999999988888888889999999999999999999999
Q ss_pred CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCC
Q psy4754 177 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 256 (304)
Q Consensus 177 d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g 256 (304)
|+.+ ++||+++++.+..+..+. ..+.+++|+|++++|++|+.|++|++||+.++..+..+.+|...|.+++|+|++
T Consensus 185 dg~i--~iwd~~~~~~~~~~~~h~--~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~ 260 (321)
T 3ow8_A 185 DGII--NIFDIATGKLLHTLEGHA--MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260 (321)
T ss_dssp TSCE--EEEETTTTEEEEEECCCS--SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred CCeE--EEEECCCCcEEEEEcccC--CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC
Confidence 9996 699999988887776554 367899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeecCCeeeeccccccchhheeeccccCCce-eEEEEEecCCcc
Q psy4754 257 TAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQ-GLTVYFQDRGRS 303 (304)
Q Consensus 257 ~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 303 (304)
.+|++|+.|++|++|++..+.+...+. .+.. =..+.|+|+++.
T Consensus 261 ~~l~s~s~D~~v~iwd~~~~~~~~~~~----~h~~~v~~v~~s~~g~~ 304 (321)
T 3ow8_A 261 THFVSSSSDKSVKVWDVGTRTCVHTFF----DHQDQVWGVKYNGNGSK 304 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEEC----CCSSCEEEEEECTTSSE
T ss_pred CEEEEEeCCCcEEEEeCCCCEEEEEEc----CCCCcEEEEEECCCCCE
Confidence 999999999999999987655333332 2222 245777777653
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-42 Score=327.17 Aligned_cols=292 Identities=20% Similarity=0.204 Sum_probs=226.3
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec-------CCcCcEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-------GHENRVSCL 74 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~-------~h~~~V~~l 74 (304)
.|++|++||..++++...+. .|...|.+++|+|+|++|++|+.|++|++||..+++.+..+. +|.++|.++
T Consensus 168 ~D~~v~lwd~~~~~~~~~l~--~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v 245 (611)
T 1nr0_A 168 DDNTVAIFEGPPFKFKSTFG--EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL 245 (611)
T ss_dssp TTSCEEEEETTTBEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred CCCeEEEEECCCCeEeeeec--cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEE
Confidence 47899999999887766544 345569999999999999999999999999999988877773 799999999
Q ss_pred EECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEecc-----------------------------------------ce
Q psy4754 75 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD-----------------------------------------SI 113 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~-----------------------------------------~~ 113 (304)
+|+|++++|+|++.|+++ ++||+.+.+.+..+... .+
T Consensus 246 ~~spdg~~l~s~s~D~~v--~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh 323 (611)
T 1nr0_A 246 TWSPDGTKIASASADKTI--KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH 323 (611)
T ss_dssp EECTTSSEEEEEETTSEE--EEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred EECCCCCEEEEEeCCCeE--EEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC
Confidence 999999999999999995 78999877665443210 11
Q ss_pred eeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec-c---------------------------------------
Q psy4754 114 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL-M--------------------------------------- 153 (304)
Q Consensus 114 ~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~--------------------------------------- 153 (304)
...+.+++|+|+++++++++.|+.|++||+.++.....+ .
T Consensus 324 ~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~ 403 (611)
T 1nr0_A 324 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSS 403 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTT
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccc
Confidence 124678999999999999999999999998764322111 0
Q ss_pred ------------------------------------------CcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCc
Q psy4754 154 ------------------------------------------GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 191 (304)
Q Consensus 154 ------------------------------------------~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~ 191 (304)
.|...+.+++|+||++++|+|+.|++| ++||+.+.+
T Consensus 404 ~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v--~lwd~~~~~ 481 (611)
T 1nr0_A 404 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV--HVYKLSGAS 481 (611)
T ss_dssp SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE--EEEEEETTE
T ss_pred ceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeE--EEEEccCCc
Confidence 123457789999999999999999996 689998754
Q ss_pred eEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-ceeeEE--eeccccceEEEEEccCCCEEEEeecCCee
Q psy4754 192 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNH--LMGHENRVSCLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~-~~~~~~--~~~h~~~i~~l~~sp~g~~lasgs~D~~i 268 (304)
...... ..+...+++++|+|+|++|++++.|++|++|+..+ ++.+.. +.+|...|++++|+|||++|||||.|++|
T Consensus 482 ~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v 560 (611)
T 1nr0_A 482 VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560 (611)
T ss_dssp EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcE
Confidence 321111 11224679999999999999999999999999887 555443 34499999999999999999999999999
Q ss_pred eeccccccchhheeeccccCC-ce-eEEEEEecCCc
Q psy4754 269 RDEESKNRYMQYLLRSRITKP-TQ-GLTVYFQDRGR 302 (304)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~ 302 (304)
|+|+...+..... .....+ .. =..+.|+|+++
T Consensus 561 ~lW~~~~~~~~~~--~~~~~h~~~~v~~v~fs~d~~ 594 (611)
T 1nr0_A 561 IVWNMNKPSDHPI--IIKGAHAMSSVNSVIWLNETT 594 (611)
T ss_dssp EEEETTCTTSCCE--EETTSSTTSCEEEEEEEETTE
T ss_pred EEEECCCcccccc--hhhccCcccCeeEEEEcCCCE
Confidence 9999866432110 011122 22 35577788775
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.7e-43 Score=305.81 Aligned_cols=272 Identities=20% Similarity=0.223 Sum_probs=215.4
Q ss_pred CCceeEEeeccccceEeeee-ccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc--eeeeeecCCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKEVACYK-KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~-~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~--~~~~~~~~h~~~V~~l~~s~ 78 (304)
.|++|||||+.+++...... ...+...|.+++|+|+|++|++|+.|+++++||..++ +.+..+.+|.++|.+++|+|
T Consensus 36 ~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp 115 (345)
T 3fm0_A 36 GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT
T ss_pred CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC
Confidence 47899999999886432222 2345556999999999999999999999999998765 45778899999999999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEe-ccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc--cceeccCc
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYK-KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLMGH 155 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h 155 (304)
++++|++|+.|+++ ++||+.......+.. ...+...+.++.|+|++.++++|+.|+.|++||..+.. ...++.+|
T Consensus 116 ~~~~l~s~s~D~~v--~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h 193 (345)
T 3fm0_A 116 SGNLLATCSRDKSV--WVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH 193 (345)
T ss_dssp TSSEEEEEETTSCE--EEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred CCCEEEEEECCCeE--EEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC
Confidence 99999999999995 789998664332221 11122347889999999999999999999999987654 34578899
Q ss_pred ccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCc---------------eEEEeecCceeeeeeEEEEcCCCCEEEEE
Q psy4754 156 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK---------------EVACYKKDSILFGATSVDFSVSGRLLFAG 220 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~---------------~~~~~~~~~~~~~~~~~~~s~~g~~l~sg 220 (304)
...|.+++|+|++++|++++.|++| ++|+..... .+..+... +...+.+++|+|++..|+++
T Consensus 194 ~~~v~~l~~sp~g~~l~s~s~D~~v--~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~ 270 (345)
T 3fm0_A 194 ESTVWSLAFDPSGQRLASCSDDRTV--RIWRQYLPGNEQGVACSGSDPSWKCICTLSGF-HSRTIYDIAWCQLTGALATA 270 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCE--EEEEEECTTCTTCCCCC---CEEEEEEEECSS-CSSCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCeE--EEeccccCCCCccceeeccCCccceeEEecCC-CCCcEEEEEEecCCCEEEEE
Confidence 9999999999999999999999996 689864321 12222211 12357899999999999999
Q ss_pred eCCCcEEEEeCCCce---------eeEEeeccccceEEEEEccCC-CEEEEeecCCeeeeccccccch
Q psy4754 221 YNDYTINVWDSLKCC---------RVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 221 ~~d~~i~iwd~~~~~---------~~~~~~~h~~~i~~l~~sp~g-~~lasgs~D~~i~~~~~~~~~~ 278 (304)
+.|+.|++|+..... ......+|...|++|+|+|++ .+|||||.|++|++|+...+..
T Consensus 271 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 271 CGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp ETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred eCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 999999999865431 122345799999999999998 5999999999999999876553
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.7e-42 Score=300.38 Aligned_cols=263 Identities=20% Similarity=0.269 Sum_probs=221.4
Q ss_pred CCceeEEeeccccce---EeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKE---VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~---~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 78 (304)
.|++|++||+.+... .+......|...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|
T Consensus 38 ~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 117 (319)
T 3frx_A 38 RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117 (319)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcC
Confidence 478999999986432 11222234556699999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCC------CCEEEEEeCCCeEEEecCCccccceec
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS------GRLLFAGYNDYTINVWDSLKCCRVNHL 152 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~------~~~l~sg~~dg~i~iwd~~~~~~~~~~ 152 (304)
++++|++|+.|+++ ++||+... .+..+..+. ..+.++.++|. +..+++++.|+.|++||+.+.+....+
T Consensus 118 ~~~~l~s~s~D~~i--~vwd~~~~-~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 192 (319)
T 3frx_A 118 KASMIISGSRDKTI--KVWTIKGQ-CLATLLGHN--DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192 (319)
T ss_dssp TSCEEEEEETTSCE--EEEETTSC-EEEEECCCS--SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCeE--EEEECCCC-eEEEEeccC--CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee
Confidence 99999999999996 68998743 444443332 24567888874 458999999999999999988888888
Q ss_pred cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 153 MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 153 ~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
.+|...|.+++|+|++++|++++.|++| ++||+++.+.+..+..+. .+.+++|+|++.+|+++.. ..+++|++.
T Consensus 193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i--~iwd~~~~~~~~~~~~~~---~v~~~~~sp~~~~la~~~~-~~i~v~~~~ 266 (319)
T 3frx_A 193 IGHNSNINTLTASPDGTLIASAGKDGEI--MLWNLAAKKAMYTLSAQD---EVFSLAFSPNRYWLAAATA-TGIKVFSLD 266 (319)
T ss_dssp CCCCSCEEEEEECTTSSEEEEEETTCEE--EEEETTTTEEEEEEECCS---CEEEEEECSSSSEEEEEET-TEEEEEEET
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeE--EEEECCCCcEEEEecCCC---cEEEEEEcCCCCEEEEEcC-CCcEEEEeC
Confidence 9999999999999999999999999996 699999988877776543 5789999999999999875 469999988
Q ss_pred CceeeEEee--------ccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 233 KCCRVNHLM--------GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 233 ~~~~~~~~~--------~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
....+..+. .|...+.+++|+|||++|++|+.|++|++|+...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 267 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp TEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 776666554 3467899999999999999999999999998754
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.1e-44 Score=315.68 Aligned_cols=268 Identities=29% Similarity=0.466 Sum_probs=226.5
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce-------eeeeecCCcCcEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-------RVNHLMGHENRVSCL 74 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~-------~~~~~~~h~~~V~~l 74 (304)
.|++|+|||+.+++....+.. +...|.+++|+|+|++|++|+.|+.+++||+.+.. ..+.+.+|.+.|.++
T Consensus 86 ~D~~v~iWd~~~~~~~~~~~~--h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~ 163 (380)
T 3iz6_a 86 QDGRLIVWNALTSQKTHAIKL--HCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSC 163 (380)
T ss_dssp TTSEEEEEETTTTEEEEEEEC--CCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCC
T ss_pred CCCeEEEEECCCCccceEEec--CCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEE
Confidence 478999999999987766553 34459999999999999999999999999986432 345678999999999
Q ss_pred EECCCC-CeEEEEeCCCceEEEEeeeCCCeeEeEEecc---ceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCC-cccc
Q psy4754 75 QVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKD---SILFGATSVDFSV-SGRLLFAGYNDYTINVWDSL-KCCR 148 (304)
Q Consensus 75 ~~s~d~-~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~---~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~-~~~~ 148 (304)
.|+|++ ..|+||+.|+++ ++||+.+++.+..+... .+...+.++.+++ ++.++++|+.|+.|++||++ ....
T Consensus 164 ~~~~~~~~~l~s~s~D~~i--~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~ 241 (380)
T 3iz6_a 164 QYVPDQETRLITGSGDQTC--VLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241 (380)
T ss_dssp BCCSSSSSCEEEECTTSCE--EEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC
T ss_pred EEecCCCCEEEEECCCCcE--EEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc
Confidence 999974 579999999995 78999988877665321 1223467788876 78899999999999999987 4466
Q ss_pred ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCce-----eeeeeEEEEcCCCCEEEEEeCC
Q psy4754 149 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI-----LFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 149 ~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~s~~g~~l~sg~~d 223 (304)
+..+.+|...|.+++|+|+++.|++|+.|+++ ++||+++++.+..+..+.. ...+++++|+|+|++|++|+.|
T Consensus 242 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i--~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d 319 (380)
T 3iz6_a 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC--RLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN 319 (380)
T ss_dssp CEEECCCSSCCCEEEECTTSSEEEEECSSSCE--EEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT
T ss_pred eEEECCcCCCeEEEEEecCCCeEEEEcCCCeE--EEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC
Confidence 77889999999999999999999999999996 6999999888777643321 1236899999999999999999
Q ss_pred CcEEEEeCCCceeeEEe----eccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 224 YTINVWDSLKCCRVNHL----MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 224 ~~i~iwd~~~~~~~~~~----~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+.|++||..+++.+..+ .+|.+.|++++|+|+|.+|+|||.|++|++|++..
T Consensus 320 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 320 GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred CCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 99999999888877776 67999999999999999999999999999998754
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.5e-43 Score=308.96 Aligned_cols=241 Identities=19% Similarity=0.212 Sum_probs=202.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeee----ecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH----LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~----~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
.+|.+++|+|++ .|++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|++++|++|+.|++| ++||+.++
T Consensus 83 ~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i--~iwd~~~~ 159 (344)
T 4gqb_B 83 AGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICI--KVWDLAQQ 159 (344)
T ss_dssp SCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE--EEEETTTT
T ss_pred CCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeE--EEEECCCC
Confidence 348999999985 677999999999999988865443 45899999999999999999999999995 78999999
Q ss_pred eeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCccccceecc--CcccceeEEEEcCC-CcEEEEeecCC
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSPD-GTAFSSGSWDT 178 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~~sp~-~~~las~s~d~ 178 (304)
+.+..+..+. ..+.++.|++++. .+++++.|+.|++||+++.+...++. .|...+.+++|+|+ ++++++|+.|+
T Consensus 160 ~~~~~~~~h~--~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 160 VVLSSYRAHA--AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp EEEEEECCCS--SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred cEEEEEcCcC--CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 8888776543 3578899999875 78999999999999999887776653 45667999999995 57899999999
Q ss_pred ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCC
Q psy4754 179 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 257 (304)
Q Consensus 179 ~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~ 257 (304)
+| ++||+++++.+..+..+. ..+++++|+|++ ++|++|+.|++|+|||..+++.+ .+.+|.+.|++|+|+|++.
T Consensus 238 ~v--~~wd~~~~~~~~~~~~h~--~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~ 312 (344)
T 4gqb_B 238 TV--SLVDTKSTSCVLSSAVHS--QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNH 312 (344)
T ss_dssp EE--EEEESCC--CCEEEECCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSST
T ss_pred cE--EEEECCCCcEEEEEcCCC--CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCC
Confidence 96 689999998888877654 367999999998 57999999999999999888654 5789999999999999986
Q ss_pred -EEEEeecCCeeeeccccccc
Q psy4754 258 -AFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 258 -~lasgs~D~~i~~~~~~~~~ 277 (304)
+|+|||.|++|++|+.+.+.
T Consensus 313 ~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 313 SLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TEEEEEETTSCEEEEECCC--
T ss_pred eEEEEEcCCCeEEEEECCCCC
Confidence 57799999999999886654
No 14
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.4e-42 Score=295.82 Aligned_cols=261 Identities=19% Similarity=0.258 Sum_probs=222.5
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++++..+.. +...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|+++
T Consensus 33 ~dg~v~lWd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 110 (304)
T 2ynn_A 33 YSGRVELWNYETQVEVRSIQV--TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP 110 (304)
T ss_dssp TTSEEEEEETTTTEEEEEEEC--CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred CCCcEEEEECCCCceeEEeec--cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCC
Confidence 488999999999988766553 345699999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCee-EeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceec-cCcccc
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENR 158 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~-~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~ 158 (304)
+|+||+.|+++ ++||+..... ...+..+. ..+.+++|+| ++..+++|+.|+.|++||+.+......+ .+|...
T Consensus 111 ~l~sgs~D~~v--~lWd~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~ 186 (304)
T 2ynn_A 111 YVLSGSDDLTV--KLWNWENNWALEQTFEGHE--HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186 (304)
T ss_dssp EEEEEETTSCE--EEEEGGGTTEEEEEECCCC--SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTC
T ss_pred EEEEECCCCeE--EEEECCCCcchhhhhcccC--CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCc
Confidence 99999999996 7899987633 33444332 3578999999 6789999999999999999876655544 456688
Q ss_pred eeEEEEcC--CCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 159 VSCLQVSP--DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 159 v~~v~~sp--~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
+..+.|+| +++++++++.|++| ++||+++.+.+..+..+. ..+.+++|+|++++|++|+.|++|++||..+++.
T Consensus 187 v~~~~~~~~~~~~~l~s~s~D~~i--~iWd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 187 VNYVDYYPLPDKPYMITASDDLTI--KIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp EEEEEECCSTTCCEEEEEETTSEE--EEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEEEEEcCCCCEEEEEcCCCeE--EEEeCCCCccceeeCCCC--CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 99999987 77899999999996 699999998888887664 4678999999999999999999999999999999
Q ss_pred eEEeeccccceEEEEEccCCC--EEEEeecCCeeeeccc
Q psy4754 237 VNHLMGHENRVSCLQVSPDGT--AFSSGSWDTTLRDEES 273 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~--~lasgs~D~~i~~~~~ 273 (304)
+.++..|...+++++|+|++. ++|+|+.|+ +.+|..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL 300 (304)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred eeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence 999999999999999999875 577777555 555544
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2e-42 Score=302.85 Aligned_cols=265 Identities=15% Similarity=0.236 Sum_probs=212.6
Q ss_pred CCceeEEeeccccce-----EeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEE
Q psy4754 2 GKNHCRLFDLRADKE-----VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 76 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~-----~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 76 (304)
.|++||+||+.+.+. .+......|...|.+++|+|++.++++|+.|++|++||+.+++.+..+.+|..+|.+++|
T Consensus 47 ~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~ 126 (343)
T 2xzm_R 47 RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126 (343)
T ss_dssp TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEE
T ss_pred CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEE
Confidence 478999999986531 122223345556999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCC----------CEEEEEeCCCeEEEecCCcc
Q psy4754 77 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG----------RLLFAGYNDYTINVWDSLKC 146 (304)
Q Consensus 77 s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~----------~~l~sg~~dg~i~iwd~~~~ 146 (304)
+|++++|++|+.|+++ ++||+.................+.++.|+|++ .++++++.|+.|++||. +.
T Consensus 127 sp~~~~l~s~~~d~~i--~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~ 203 (343)
T 2xzm_R 127 SPDNRQILSAGAEREI--KLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NF 203 (343)
T ss_dssp CSSTTEEEEEETTSCE--EEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TT
T ss_pred CCCCCEEEEEcCCCEE--EEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CC
Confidence 9999999999999996 78998744332211111222346788999886 78999999999999994 44
Q ss_pred ccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCC-ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCc
Q psy4754 147 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 225 (304)
Q Consensus 147 ~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~ 225 (304)
.....+.+|...|.+++|+|++++|++|+.|+++ ++||++.. .....+... ..+.+++|+|++++++++. |+.
T Consensus 204 ~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v--~iwd~~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~~-d~~ 277 (343)
T 2xzm_R 204 QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL--LIWDILNLTYPQREFDAG---STINQIAFNPKLQWVAVGT-DQG 277 (343)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEE--EEEESSCCSSCSEEEECS---SCEEEEEECSSSCEEEEEE-SSC
T ss_pred ceeEEEcCccccceEEEECCCCCEEEEEcCCCeE--EEEECCCCcccceeecCC---CcEEEEEECCCCCEEEEEC-CCC
Confidence 5566788999999999999999999999999996 68998443 333333222 2478999999999887664 778
Q ss_pred EEEEeCCCceeeE--Eee-----------ccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 226 INVWDSLKCCRVN--HLM-----------GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 226 i~iwd~~~~~~~~--~~~-----------~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
|++||+.++.... .+. +|...|.+++|+|+|.+|++|+.|++|++|+...
T Consensus 278 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 278 VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp EEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred EEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 9999987765433 333 6888999999999999999999999999998754
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-42 Score=299.42 Aligned_cols=266 Identities=20% Similarity=0.225 Sum_probs=204.3
Q ss_pred CCceeEEeeccccc--eEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC-------ceeeeeecCCcCcEE
Q psy4754 2 GKNHCRLFDLRADK--EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-------CCRVNHLMGHENRVS 72 (304)
Q Consensus 2 ~~~~v~~wd~~~~~--~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~-------~~~~~~~~~h~~~V~ 72 (304)
.|++|++||+.++. ....+....|...|.+++|+|++++|++|+.|++|++||... .+.+..+.+|.++|.
T Consensus 32 ~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 111 (330)
T 2hes_X 32 TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK 111 (330)
T ss_dssp SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEE
T ss_pred CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE
Confidence 47899999998863 223222222555699999999999999999999999999843 345677889999999
Q ss_pred EEEECCCCCeEEEEeCCCceEEEEeeeCCC----eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc--
Q psy4754 73 CLQVSPDGTAFSSGSWDTTLRCRLFDLRAD----KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-- 146 (304)
Q Consensus 73 ~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-- 146 (304)
+++|+|++++|++|+.|+++ ++||+... +.+..+..+. ..+.++.|+|++.+|++|+.|++|++||..+.
T Consensus 112 ~v~~sp~g~~las~s~D~~v--~iwd~~~~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~ 187 (330)
T 2hes_X 112 GVAWSNDGYYLATCSRDKSV--WIWETDESGEEYECISVLQEHS--QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW 187 (330)
T ss_dssp EEEECTTSCEEEEEETTSCE--EEEECCTTCCCCEEEEEECCCS--SCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE
T ss_pred EEEECCCCCEEEEEeCCCEE--EEEeccCCCCCeEEEEEeccCC--CceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe
Confidence 99999999999999999996 78999432 2334444332 35789999999999999999999999997654
Q ss_pred ccceeccCcccceeEEEEcCC--CcEEEEeecCCceEEEEeeecCC--------ceEEEeecCceeeeeeEEEEcCCCCE
Q psy4754 147 CRVNHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDLRAD--------KEVACYKKDSILFGATSVDFSVSGRL 216 (304)
Q Consensus 147 ~~~~~~~~h~~~v~~v~~sp~--~~~las~s~d~~i~i~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~s~~g~~ 216 (304)
+++..+.+|...|.+++|+|+ +..+++++.|+++ ++||++.. .....+.. .+...+.+++|++++ +
T Consensus 188 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v--~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~ 263 (330)
T 2hes_X 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV--RVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-L 263 (330)
T ss_dssp EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCE--EEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-C
T ss_pred eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeE--EEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-E
Confidence 567788999999999999998 6789999999996 68998654 22222222 122467899999765 8
Q ss_pred EEEEeCCCcEEEEeCCCce--eeEE-eecccc-ceEEEEEcc--CCCEEEEeecCCeeeeccccc
Q psy4754 217 LFAGYNDYTINVWDSLKCC--RVNH-LMGHEN-RVSCLQVSP--DGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~~~--~~~~-~~~h~~-~i~~l~~sp--~g~~lasgs~D~~i~~~~~~~ 275 (304)
|++++.|++|++||..+++ .+.. ..+|.. .|.+++|+| ++.+|||||.|++|++|+.+.
T Consensus 264 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 264 IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 8999999999999987763 2333 357887 899999999 789999999999999998753
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.2e-42 Score=304.39 Aligned_cols=265 Identities=18% Similarity=0.245 Sum_probs=209.9
Q ss_pred CceeEEeeccccceEeeeec--cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee----eecCCcCcEEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKK--DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN----HLMGHENRVSCLQV 76 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~--~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~----~~~~h~~~V~~l~~ 76 (304)
|++|++|+..++.....+.. ..+..+|++++|+|++.++ +++.||+|+|||+.+++... ...+|.+.|.+++|
T Consensus 69 d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~ 147 (357)
T 4g56_B 69 GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV 147 (357)
T ss_dssp CEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEE
T ss_pred cCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE
Confidence 67899999988754322222 1233459999999998655 67789999999998876432 23489999999999
Q ss_pred CCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCccccceec--c
Q psy4754 77 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHL--M 153 (304)
Q Consensus 77 s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~--~ 153 (304)
+|++++|++|+.|++| ++||+.+.+.+..++.+. ..+.+++|++++. ++++++.|+.|++||+++.+....+ .
T Consensus 148 spdg~~l~sgs~dg~v--~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~ 223 (357)
T 4g56_B 148 FSDGTQAVSGGKDFSV--KVWDLSQKAVLKSYNAHS--SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC 223 (357)
T ss_dssp CSSSSEEEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred CCCCCEEEEEeCCCeE--EEEECCCCcEEEEEcCCC--CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence 9999999999999995 789999998888776543 3568899999875 7889999999999999887765543 4
Q ss_pred CcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCC-CEEEEEeCCCcEEEEeC
Q psy4754 154 GHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDS 231 (304)
Q Consensus 154 ~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~sg~~d~~i~iwd~ 231 (304)
.|...+.+++|+|++ ++|++|+.|+.| ++||+++.+.+..+..+. ..+++++|+|++ ++|++|+.|++|+|||+
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i--~~wd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGDETGNV--SLVNIKNPDSAQTSAVHS--QNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEESSSCE--EEEESSCGGGCEEECCCS--SCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred cccccccchhhhhcccceEEEeecccce--eEEECCCCcEeEEEeccc--eeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 577789999999974 689999999996 699999988877776554 367999999997 57999999999999999
Q ss_pred CCceeeEEeeccccceEEEEEcc-CCCEEEEeecCCeeeeccccccc
Q psy4754 232 LKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 232 ~~~~~~~~~~~h~~~i~~l~~sp-~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
.+++.+.. .+|.+.|++|+|+| ++.+|+|||.|++|++|++....
T Consensus 300 ~~~~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 300 DFSEVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TSCEEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCCcEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 99877654 48999999999999 89999999999999999986543
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.5e-42 Score=321.69 Aligned_cols=267 Identities=16% Similarity=0.202 Sum_probs=222.5
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce--eeeeecCCcCcEEEEEECCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~d~ 80 (304)
+++|++||+.+++....+. .|...|++++|+|+|++||+|+.||+|+|||+.+++ ....+.+|.++|.+++|+||+
T Consensus 38 ~~~v~l~~~~~~~~~~~~~--~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg 115 (611)
T 1nr0_A 38 GTSVYTVPVGSLTDTEIYT--EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES 115 (611)
T ss_dssp TTEEEEEETTCSSCCEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS
T ss_pred CCEEEEecCCCcccCeEec--CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCC
Confidence 4689999999887665544 345569999999999999999999999999986543 345678999999999999999
Q ss_pred CeEEEEeCCC--ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCccccceeccCccc
Q psy4754 81 TAFSSGSWDT--TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHEN 157 (304)
Q Consensus 81 ~~l~sgs~D~--~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~ 157 (304)
+.|++++.|. ...+++||.. +....+..+ ...+.+++|+|++. .+++|+.|++|++||..+.+...++.+|..
T Consensus 116 ~~l~~~~~~~~~~~~v~~wd~~--~~~~~l~gh--~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~ 191 (611)
T 1nr0_A 116 KRIAAVGEGRERFGHVFLFDTG--TSNGNLTGQ--ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK 191 (611)
T ss_dssp CEEEEEECCSSCSEEEEETTTC--CBCBCCCCC--SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS
T ss_pred CEEEEEECCCCceeEEEEeeCC--CCcceecCC--CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC
Confidence 9999988653 3456889853 333333333 23578999999987 599999999999999988888888999999
Q ss_pred ceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC-----ceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 158 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD-----SILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 158 ~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
.|.+++|+|++++|++++.|+++ ++||+.+++.+..+... .+...+.+++|+|+|++|++++.|++|++||+.
T Consensus 192 ~V~~v~fspdg~~las~s~D~~i--~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 192 FVHSVRYNPDGSLFASTGGDGTI--VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCE--EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEECCCcE--EEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999996 69999888877666321 223468999999999999999999999999988
Q ss_pred CceeeE-------------------------------------------EeeccccceEEEEEccCCCEEEEeecCCeee
Q psy4754 233 KCCRVN-------------------------------------------HLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269 (304)
Q Consensus 233 ~~~~~~-------------------------------------------~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~ 269 (304)
+++.+. .+.+|...|++++|+|+|++|++++.|++|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~ 349 (611)
T 1nr0_A 270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349 (611)
T ss_dssp TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Confidence 765543 3457999999999999999999999999999
Q ss_pred eccccccc
Q psy4754 270 DEESKNRY 277 (304)
Q Consensus 270 ~~~~~~~~ 277 (304)
+|+...+.
T Consensus 350 ~Wd~~~~~ 357 (611)
T 1nr0_A 350 SWDISTGI 357 (611)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 99987654
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.8e-41 Score=291.18 Aligned_cols=265 Identities=22% Similarity=0.353 Sum_probs=228.3
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++....+. .+...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++
T Consensus 43 ~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 120 (312)
T 4ery_A 43 ADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120 (312)
T ss_dssp TTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred CCCeEEEEeCCCcccchhhc--cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 37899999999988765543 3455699999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec-cCccccee
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENRVS 160 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~ 160 (304)
+|++|+.|+++ ++||+.+.+.+..+..+. ..+.++.|+|+++++++++.|+.|++||+.+.+.+..+ ..+..++.
T Consensus 121 ~l~s~~~d~~i--~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 196 (312)
T 4ery_A 121 LIVSGSFDESV--RIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196 (312)
T ss_dssp EEEEEETTSCE--EEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEE
T ss_pred EEEEEeCCCcE--EEEECCCCEEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceE
Confidence 99999999995 789999888777665543 24678999999999999999999999999887776654 45667899
Q ss_pred EEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEE-EcCCCCEEEEEeCCCcEEEEeCCCceeeEE
Q psy4754 161 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD-FSVSGRLLFAGYNDYTINVWDSLKCCRVNH 239 (304)
Q Consensus 161 ~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~ 239 (304)
.++|+|+++++++++.|+.+ ++||+++.+.+..+..+.......... ..+++.+|++|+.|+.|++||+.+++.+..
T Consensus 197 ~~~~~~~~~~l~~~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 274 (312)
T 4ery_A 197 FVKFSPNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274 (312)
T ss_dssp EEEECTTSSEEEEEETTTEE--EEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE
T ss_pred EEEECCCCCEEEEEcCCCeE--EEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh
Confidence 99999999999999999986 699999988877776543222222233 347789999999999999999999999999
Q ss_pred eeccccceEEEEEccCCCEEEEee--cCCeeeecccc
Q psy4754 240 LMGHENRVSCLQVSPDGTAFSSGS--WDTTLRDEESK 274 (304)
Q Consensus 240 ~~~h~~~i~~l~~sp~g~~lasgs--~D~~i~~~~~~ 274 (304)
+.+|.+.|.+++|+|++..|++++ .|++|++|+.+
T Consensus 275 ~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred hhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999999999999997 69999999753
No 20
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.3e-42 Score=301.76 Aligned_cols=280 Identities=19% Similarity=0.181 Sum_probs=211.7
Q ss_pred eEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc-----------eeeeeecCCcCcEEEE
Q psy4754 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-----------CRVNHLMGHENRVSCL 74 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~-----------~~~~~~~~h~~~V~~l 74 (304)
-|.|++....+. .+...|.+++|+|||++|++++ |+++++||.... ........|..+|.++
T Consensus 16 ~r~w~~~~~~~~------~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 88 (344)
T 4gqb_B 16 AREWNLPPNAPA------CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADL 88 (344)
T ss_dssp -------CCSCS------SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEE
T ss_pred ccccCCCCCCcc------cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEE
Confidence 356666554321 1223489999999999998887 778888873211 1111223466789999
Q ss_pred EECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEe--ccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec
Q psy4754 75 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK--KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 152 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 152 (304)
+|+|++ .|++|+.|++| ++||+.+++.+...+ ...+...+.+++|+|++++|++|+.|++|++||+.+++.+..+
T Consensus 89 ~~s~d~-~l~~~s~dg~v--~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~ 165 (344)
T 4gqb_B 89 TWVGER-GILVASDSGAV--ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY 165 (344)
T ss_dssp EEETTT-EEEEEETTSEE--EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEeCCC-eEEEEECCCEE--EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 999985 68899999995 789998876554432 1122235789999999999999999999999999999999999
Q ss_pred cCcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCC-CCEEEEEeCCCcEEEEe
Q psy4754 153 MGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWD 230 (304)
Q Consensus 153 ~~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sg~~d~~i~iwd 230 (304)
.+|...|.+++|+|++ ..|++++.|++| ++||+++++....+........+.+++|+|+ +++|++|+.|++|++||
T Consensus 166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRI--LLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSCE--EEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred cCcCCceEEEEecCCCCCceeeecccccc--ccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEE
Confidence 9999999999999988 478999999996 6999999888776644433345789999985 57889999999999999
Q ss_pred CCCceeeEEeeccccceEEEEEccCC-CEEEEeecCCeeeeccccccchhheeeccccCCcee-EEEEEecCCc
Q psy4754 231 SLKCCRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGR 302 (304)
Q Consensus 231 ~~~~~~~~~~~~h~~~i~~l~~sp~g-~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 302 (304)
+.+++++.++.+|...|++++|+|++ ++|||||.|++|++||...+.... ...+... ..|.|+|+++
T Consensus 244 ~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-----~~~H~~~V~~v~~sp~~~ 312 (344)
T 4gqb_B 244 TKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-----SQAHRDFVRDATWSPLNH 312 (344)
T ss_dssp SCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-----ECCCSSCEEEEEECSSST
T ss_pred CCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-----EcCCCCCEEEEEEeCCCC
Confidence 99999999999999999999999998 579999999999999987654221 2233333 4577888765
No 21
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.8e-41 Score=292.80 Aligned_cols=267 Identities=17% Similarity=0.236 Sum_probs=224.1
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~ 103 (304)
.|...|++++|+|++++|++|+.||+|++||..+++.+..+..|...|.+++|+|++++|++|+.|+.+ ++||+....
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v--~iw~~~~~~ 130 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC--SIYNLKTRE 130 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEE--EEEETTTCS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeE--EEEECccCC
Confidence 344569999999999999999999999999999999999999999999999999999999999999995 789987642
Q ss_pred ----eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCc
Q psy4754 104 ----EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179 (304)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~ 179 (304)
....+..+. ..+.++.|++++. +++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++.+++|+.|++
T Consensus 131 ~~~~~~~~~~~h~--~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~ 207 (340)
T 1got_B 131 GNVRVSRELAGHT--GYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS 207 (340)
T ss_dssp BSCEEEEEEECCS--SCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CcceeEEEecCCC--ccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence 222233322 2467888988764 889999999999999999888899999999999999999999999999999
Q ss_pred eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec--cccceEEEEEccCCC
Q psy4754 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--HENRVSCLQVSPDGT 257 (304)
Q Consensus 180 i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g~ 257 (304)
+ ++||+++++....+..+. ..+++++|+|++++|++|+.|++|++||+.+++.+..+.. +...|.+++|+|+|+
T Consensus 208 v--~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 208 A--KLWDVREGMCRQTFTGHE--SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp E--EEEETTTCSEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred E--EEEECCCCeeEEEEcCCc--CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence 6 689999988887776554 3679999999999999999999999999998887776643 335799999999999
Q ss_pred EEEEeecCCeeeeccccccchhheeeccccCCcee-EEEEEecCCcc
Q psy4754 258 AFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGRS 303 (304)
Q Consensus 258 ~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 303 (304)
+|++|+.|++|++|+.........+ ..+... ..+.|+|+|+.
T Consensus 284 ~l~~g~~d~~i~vwd~~~~~~~~~~----~~h~~~v~~~~~s~dg~~ 326 (340)
T 1got_B 284 LLLAGYDDFNCNVWDALKADRAGVL----AGHDNRVSCLGVTDDGMA 326 (340)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEEEECTTSSC
T ss_pred EEEEECCCCeEEEEEcccCcEeeEe----ecCCCcEEEEEEcCCCCE
Confidence 9999999999999998665433222 223333 45788888764
No 22
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.8e-42 Score=302.91 Aligned_cols=286 Identities=15% Similarity=0.114 Sum_probs=210.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeC------CCcEEEEeCCCceeee----eecCCcCcE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN------DYTINVWDSLKCCRVN----HLMGHENRV 71 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~------dg~v~iwd~~~~~~~~----~~~~h~~~V 71 (304)
|+.+.+.|++....+ ..|...|++++|+|||++||+|+. |++|++|+..++.... ...+|...|
T Consensus 24 g~~~~~~w~~p~~~p------~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V 97 (357)
T 4g56_B 24 GSSKGSAWGRPVTAP------ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGV 97 (357)
T ss_dssp ----------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCE
T ss_pred CCccccccCCCCCCc------ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCE
Confidence 345566676654432 124455999999999999999997 7889999987765433 335688999
Q ss_pred EEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE--eccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc
Q psy4754 72 SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY--KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149 (304)
Q Consensus 72 ~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~ 149 (304)
.+++|+|+++ +++++.|++| ++||+.+++..... ....+...+.+++|+|++++|++|+.|+.|++||+.+++.+
T Consensus 98 ~~~~~s~d~~-~l~~s~dg~v--~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~ 174 (357)
T 4g56_B 98 TDVAWVSEKG-ILVASDSGAV--ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL 174 (357)
T ss_dssp EEEEEETTTE-EEEEETTSCE--EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEEcCCCC-EEEEECCCEE--EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 9999999975 5567889995 78999876544322 11122235789999999999999999999999999999989
Q ss_pred eeccCcccceeEEEEcCCCc-EEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCC-CCEEEEEeCCCcEE
Q psy4754 150 NHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTIN 227 (304)
Q Consensus 150 ~~~~~h~~~v~~v~~sp~~~-~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~sg~~d~~i~ 227 (304)
..+.+|...|.+++|+|++. .+++++.|+++ ++||+++++....+........+.+++|+|+ +.+|++|+.|+.|+
T Consensus 175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v--~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~ 252 (357)
T 4g56_B 175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRI--LLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVS 252 (357)
T ss_dssp EEECCCSSCEEEEEECTTCSSCEEEEETTSCE--EECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEE
T ss_pred EEEcCCCCCEEEEEEccCCCceeeeeccCCce--EEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccccee
Confidence 99999999999999999875 78999999996 6899998877655544333345789999998 56889999999999
Q ss_pred EEeCCCceeeEEeeccccceEEEEEccCC-CEEEEeecCCeeeeccccccchhheeeccccCCcee-EEEEEec-CCcc
Q psy4754 228 VWDSLKCCRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQD-RGRS 303 (304)
Q Consensus 228 iwd~~~~~~~~~~~~h~~~i~~l~~sp~g-~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~ 303 (304)
+||+.+++.+..+.+|...|++++|+|++ ++||+||.|++|++||.+.+.....+ .+... ..|+|+| +++.
T Consensus 253 ~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-----~H~~~V~~vafsP~d~~~ 326 (357)
T 4g56_B 253 LVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-----SHRDFVTGVAWSPLDHSK 326 (357)
T ss_dssp EEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-----CCSSCEEEEEECSSSTTE
T ss_pred EEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-----CCCCCEEEEEEeCCCCCE
Confidence 99999999999999999999999999987 57999999999999998765433222 23333 3477777 5543
No 23
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.3e-40 Score=286.05 Aligned_cols=271 Identities=22% Similarity=0.308 Sum_probs=224.8
Q ss_pred cccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCC-----ceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEE
Q psy4754 23 DSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLK-----CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 96 (304)
Q Consensus 23 ~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~-----~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~ 96 (304)
..|...|++++|+|++ .+|+||+.|++|++|++.. +.+++.+.+|...|.+++|+|++++|+||+.|++| ++
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v--~~ 91 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL--RL 91 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE--EE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE--EE
Confidence 3445559999999965 7999999999999999753 34567889999999999999999999999999995 78
Q ss_pred eeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCC------CcE
Q psy4754 97 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD------GTA 170 (304)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~------~~~ 170 (304)
||+.+++.+..+..+. ..+.+++|+|++.++++|+.|++|++||+. ...+..+.+|...|.++.++|. +..
T Consensus 92 wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 92 WDVATGETYQRFVGHK--SDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp EETTTTEEEEEEECCS--SCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCE
T ss_pred EECCCCCeeEEEccCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence 9999998887776543 257899999999999999999999999986 4566778899999999999995 448
Q ss_pred EEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEE
Q psy4754 171 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL 250 (304)
Q Consensus 171 las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l 250 (304)
+++++.|+++ ++||+++.+....+..+. ..+.+++|+|+|++|++|+.|++|++||+.+++.+..+..| .+|.++
T Consensus 169 l~s~~~d~~i--~~wd~~~~~~~~~~~~h~--~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~ 243 (319)
T 3frx_A 169 IISAGNDKMV--KAWNLNQFQIEADFIGHN--SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSL 243 (319)
T ss_dssp EEEEETTSCE--EEEETTTTEEEEEECCCC--SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEE
T ss_pred EEEEeCCCEE--EEEECCcchhheeecCCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEE
Confidence 9999999996 699999887776665554 46799999999999999999999999999999988888754 689999
Q ss_pred EEccCCCEEEEeecCCeeeeccccccchhheeeccccC-----CceeEEEEEecCCccC
Q psy4754 251 QVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITK-----PTQGLTVYFQDRGRSI 304 (304)
Q Consensus 251 ~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 304 (304)
+|+|++..|++++. ..+++|+++.++.....+..... +..-..++|+|+|+.|
T Consensus 244 ~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 301 (319)
T 3frx_A 244 AFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301 (319)
T ss_dssp EECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEE
T ss_pred EEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEE
Confidence 99999999998874 56999988776544333322111 1224679999998754
No 24
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.1e-40 Score=308.29 Aligned_cols=255 Identities=24% Similarity=0.382 Sum_probs=219.9
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++||+||..+.... .+ ..+...+.+++|+|++++|++|+.||+|++||. +++.+..+.+|..+|.+++|+||++
T Consensus 323 ~d~~i~~w~~~~~~~~-~~--~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~ 398 (577)
T 2ymu_A 323 DDKTVKLWNRNGQHLQ-TL--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ 398 (577)
T ss_dssp TTSCEEEEETTSCEEE-EE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSS
T ss_pred CCCeEEEEeCCCCeeE-EE--eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCC
Confidence 4788999998776443 22 234456999999999999999999999999996 4677888899999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
+|++++.|+++ ++||.. .+.+..+..+. ..+.+++|+|+++++++++.|+.|++||. +.+.+..+.+|..+|.+
T Consensus 399 ~l~~~~~d~~v--~~~~~~-~~~~~~~~~~~--~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~ 472 (577)
T 2ymu_A 399 TIASASDDKTV--KLWNRN-GQLLQTLTGHS--SSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG 472 (577)
T ss_dssp CEEEEETTSEE--EEECTT-CCEEEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEE
T ss_pred EEEEEeCCCEE--EEEeCC-CCEEEEecCCC--CCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEE
Confidence 99999999995 689964 45555555443 24678999999999999999999999996 45667788899999999
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 241 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~ 241 (304)
++|+|+++++++++.|++| ++||. +++.+..+..+. ..+++++|+|+|++|++++.|+.|++||. +++++..+.
T Consensus 473 ~~~spd~~~las~~~d~~i--~iw~~-~~~~~~~~~~h~--~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~ 546 (577)
T 2ymu_A 473 VAFSPDGQTIASASDDKTV--KLWNR-NGQLLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 546 (577)
T ss_dssp EEECTTSCEEEEEETTSEE--EEEET-TSCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCEE--EEEcC-CCCEEEEEeCCC--CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc
Confidence 9999999999999999996 68995 556667766554 46799999999999999999999999995 678889999
Q ss_pred ccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 242 GHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 242 ~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
+|.+.|++++|+|||++|+|+|.|++|++||
T Consensus 547 ~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999999999999996
No 25
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-41 Score=301.46 Aligned_cols=288 Identities=20% Similarity=0.241 Sum_probs=226.2
Q ss_pred eEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEE
Q psy4754 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 85 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s 85 (304)
+..|++.+..+...+. .|...|++++|+|++++|+||+.||+|++||..+++....+.+|..+|.+++|+|++++|++
T Consensus 48 ~~~~~~~~~~~~~~l~--gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las 125 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQ--GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC 125 (380)
T ss_dssp CCCCCCCCCEEEEEEC--CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEE
T ss_pred ccccccceeEEeeccc--ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEE
Confidence 4456666655544433 44556999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCceEEEEeeeCCCee-------EeEEeccceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCCccccceec-----
Q psy4754 86 GSWDTTLRCRLFDLRADKE-------VACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHL----- 152 (304)
Q Consensus 86 gs~D~~i~~~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~----- 152 (304)
|+.|+++ ++||+..... ...+..+ ...+.++.|+|+ +..+++|+.|++|++||+.+++.+..+
T Consensus 126 ~~~d~~v--~iw~~~~~~~~~~~~~~~~~~~gh--~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~ 201 (380)
T 3iz6_a 126 GGLDSAC--SIFNLSSQADRDGNMPVSRVLTGH--KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP 201 (380)
T ss_dssp CCSSSCC--EEEECCCCSSCCCSSTTCCBCCCC--SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS
T ss_pred eeCCCcE--EEEECCCCccccCCccceeeccCC--CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC
Confidence 9999996 6899864321 1111222 123567788886 457999999999999999988776655
Q ss_pred cCcccceeEEEEcC-CCcEEEEeecCCceEEEEeeecC-CceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 153 MGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRA-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 153 ~~h~~~v~~v~~sp-~~~~las~s~d~~i~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
.+|...|.+++|+| +++.|++|+.|+++ ++||++. .+.+..+..+. ..+++++|+|++++|++|+.|++|++||
T Consensus 202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v--~~wd~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D~~i~lwd 277 (380)
T 3iz6_a 202 SGHTADVLSLSINSLNANMFISGSCDTTV--RLWDLRITSRAVRTYHGHE--GDINSVKFFPDGQRFGTGSDDGTCRLFD 277 (380)
T ss_dssp SSCCSCEEEEEECSSSCCEEEEEETTSCE--EEEETTTTCCCCEEECCCS--SCCCEEEECTTSSEEEEECSSSCEEEEE
T ss_pred CCCccCeEEEEeecCCCCEEEEEECCCeE--EEEECCCCCcceEEECCcC--CCeEEEEEecCCCeEEEEcCCCeEEEEE
Confidence 68999999999977 88999999999996 6999984 35555565543 4679999999999999999999999999
Q ss_pred CCCceeeEEeecccc-------ceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCcee-EEEEEecCCc
Q psy4754 231 SLKCCRVNHLMGHEN-------RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGR 302 (304)
Q Consensus 231 ~~~~~~~~~~~~h~~-------~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 302 (304)
+.++..+..+..|.. .|++++|+|+|++|++|+.|+.|++||...+.....+..-...+... ..|.|+|+|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 357 (380)
T 3iz6_a 278 MRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS 357 (380)
T ss_dssp TTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS
T ss_pred CCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC
Confidence 999988887765432 48999999999999999999999999976544333222211222222 4577788776
Q ss_pred c
Q psy4754 303 S 303 (304)
Q Consensus 303 ~ 303 (304)
.
T Consensus 358 ~ 358 (380)
T 3iz6_a 358 A 358 (380)
T ss_dssp E
T ss_pred E
Confidence 4
No 26
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.2e-40 Score=295.76 Aligned_cols=263 Identities=23% Similarity=0.336 Sum_probs=225.1
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
|++|+|||..++++...+..+.+...|++++|+|+|++||+|+.||+|++||+.+++.++.+.+|...|.+++++ ++.
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~ 201 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYI 201 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCE
Confidence 789999999999988877777666679999999999999999999999999999999999999999999998875 679
Q ss_pred EEEEeCCCceEEEEeeeCCCe-eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc----cceeccCccc
Q psy4754 83 FSSGSWDTTLRCRLFDLRADK-EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC----RVNHLMGHEN 157 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~----~~~~~~~h~~ 157 (304)
|++|+.|+.+ ++||..... .+..+..+. ..+..+.+++++.++++++.|+.+++||..+.+ .+.....|..
T Consensus 202 l~sgs~d~~i--~~~d~~~~~~~~~~~~~h~--~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~ 277 (420)
T 4gga_A 202 LSSGSRSGHI--HHHDVRVAEHHVATLSGHS--QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277 (420)
T ss_dssp EEEEETTSEE--EEEETTSSSCEEEEEECCS--SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS
T ss_pred EEEEeCCCce--eEeeecccceeeEEecccc--cceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCC
Confidence 9999999995 689987543 333344332 246788999999999999999999999987654 3455678999
Q ss_pred ceeEEEEcCCC-cEEEE--eecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe--CCCcEEEEeCC
Q psy4754 158 RVSCLQVSPDG-TAFSS--GSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY--NDYTINVWDSL 232 (304)
Q Consensus 158 ~v~~v~~sp~~-~~las--~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~--~d~~i~iwd~~ 232 (304)
.|.+++|+|++ ..+++ |+.|++| ++||+++++....+..+. .+.++.|+|+++.+++++ .|+.|+|||..
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I--~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~ 352 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHI--RIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYP 352 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEE--EEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEE--EEEeCCccccceeecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence 99999999965 45554 4578885 699999998877776554 468899999999988865 78999999999
Q ss_pred CceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 233 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 233 ~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
+++++.++.+|.++|++|+|+|||++|+|||.|++||+|+..+.
T Consensus 353 ~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 353 TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99999999999999999999999999999999999999987543
No 27
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.9e-40 Score=288.00 Aligned_cols=241 Identities=22% Similarity=0.276 Sum_probs=200.4
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee---eeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe-
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV---NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK- 103 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~---~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~- 103 (304)
.|.+++|+|+|++||+|+.|++|+|||+.++... ....+|...|.+++|+|++++|++|+.|+++ ++||+....
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v--~iw~~~~~~~ 95 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT--CIWKKNQDDF 95 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE--EEEEECCC-E
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE--EEEEccCCCe
Confidence 5899999999999999999999999999876532 2236899999999999999999999999996 689987654
Q ss_pred -eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc---cceeccCcccceeEEEEcCCCcEEEEeecCCc
Q psy4754 104 -EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179 (304)
Q Consensus 104 -~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~ 179 (304)
.+..++.+ ...+.+++|+|++++|++|+.|+.|++||+.+.. .+..+.+|...|.+++|+|++++|++++.|++
T Consensus 96 ~~~~~~~~h--~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~ 173 (345)
T 3fm0_A 96 ECVTTLEGH--ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDT 173 (345)
T ss_dssp EEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSC
T ss_pred EEEEEccCC--CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCc
Confidence 33344433 3357899999999999999999999999987643 34567899999999999999999999999999
Q ss_pred eEEEEeeecCCceE--EEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC---------------ceeeEEeec
Q psy4754 180 LRCRLFDLRADKEV--ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK---------------CCRVNHLMG 242 (304)
Q Consensus 180 i~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~---------------~~~~~~~~~ 242 (304)
+ ++||.++.+.. ..+..+. ..+.+++|+|+|++|++|+.|++|++||... ...+..+.+
T Consensus 174 i--~~w~~~~~~~~~~~~~~~h~--~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T 3fm0_A 174 V--KLYREEEDDWVCCATLEGHE--STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249 (345)
T ss_dssp E--EEEEEETTEEEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS
T ss_pred E--EEEEecCCCEEEEEEecCCC--CceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC
Confidence 6 68999876543 3444333 4689999999999999999999999998522 123445555
Q ss_pred -cccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 243 -HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 243 -h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
|...|++++|+|++..|++++.|+.|++|+....
T Consensus 250 ~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 8899999999999999999999999999987543
No 28
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.2e-40 Score=282.76 Aligned_cols=269 Identities=23% Similarity=0.313 Sum_probs=226.4
Q ss_pred cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 23 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 23 ~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
..|...|++++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|++++|++|+.|+++ ++||+.+.
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i--~vwd~~~~ 97 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--KIWDVSSG 97 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE--EEEETTTC
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEE--EEEECCCC
Confidence 3455569999999999999999999999999999998888899999999999999999999999999995 78999988
Q ss_pred eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEE
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i 182 (304)
+.+..++.+.. .+.++.|+|+++++++|+.|+.|++||+++.+.+..+..|..+|.+++|+|+++.+++++.|+.+
T Consensus 98 ~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i-- 173 (312)
T 4ery_A 98 KCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC-- 173 (312)
T ss_dssp CEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE--
T ss_pred cEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcE--
Confidence 88777765432 46789999999999999999999999999988888899999999999999999999999999996
Q ss_pred EEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEE--EE-ccCCCEE
Q psy4754 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL--QV-SPDGTAF 259 (304)
Q Consensus 183 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l--~~-sp~g~~l 259 (304)
++||+++.+.+..+.... ...+..++|+|++++|++++.|+.|++||+.+++.+..+.+|...+.++ .+ .+++.+|
T Consensus 174 ~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
T 4ery_A 174 RIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252 (312)
T ss_dssp EEEETTTCCEEEEECCSS-CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEE
T ss_pred EEEECCCCceeeEEeccC-CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEE
Confidence 689999888766653322 2356889999999999999999999999999999999999887654332 33 4678999
Q ss_pred EEeecCCeeeeccccccchhheeeccccCCce-eEEEEEecCCc
Q psy4754 260 SSGSWDTTLRDEESKNRYMQYLLRSRITKPTQ-GLTVYFQDRGR 302 (304)
Q Consensus 260 asgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 302 (304)
++|+.|+.|++|+...+.....++ .+.. -..+++.|+++
T Consensus 253 ~sg~~dg~i~vwd~~~~~~~~~~~----~h~~~v~~~~~~p~~~ 292 (312)
T 4ery_A 253 VSGSEDNLVYIWNLQTKEIVQKLQ----GHTDVVISTACHPTEN 292 (312)
T ss_dssp EECCTTSCEEEEETTTCCEEEEEC----CCSSCEEEEEECSSSS
T ss_pred EEECCCCEEEEEECCCchhhhhhh----ccCCcEEEEeecCcCC
Confidence 999999999999987654333222 2222 34566666654
No 29
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.5e-40 Score=287.88 Aligned_cols=269 Identities=20% Similarity=0.254 Sum_probs=224.0
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~ 103 (304)
.|...|.+++|+|++++|+||+.||+|++||..+++....+..|..+|.+++|+|++++|++|+.|+.+ ++|++....
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i--~v~~~~~~~ 139 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKC--SVYPLTFDK 139 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEE--EEEECCCCT
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCE--EEEEEeccc
Confidence 344559999999999999999999999999999998888888999999999999999999999999996 678875321
Q ss_pred ------eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcC--CCcEEEEee
Q psy4754 104 ------EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP--DGTAFSSGS 175 (304)
Q Consensus 104 ------~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~las~s 175 (304)
....+..+ ...+.++.|+|++..+++++.|++|++||+.+++.+..+.+|...|.+++|+| +++.|++|+
T Consensus 140 ~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs 217 (354)
T 2pbi_B 140 NENMAAKKKSVAMH--TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG 217 (354)
T ss_dssp TCCSGGGCEEEEEC--SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred cccccccceeeecc--CCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence 11222222 12467899999999999999999999999999988889999999999999987 568999999
Q ss_pred cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc--ccceEEEEEc
Q psy4754 176 WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH--ENRVSCLQVS 253 (304)
Q Consensus 176 ~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h--~~~i~~l~~s 253 (304)
.|+++ ++||+++++.+..+..+. ..+++++|+|++++|++|+.|++|++||+.+...+..+..+ ...+.+++|+
T Consensus 218 ~Dg~v--~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 218 CDKKA--MVWDMRSGQCVQAFETHE--SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp TTSCE--EEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred CCCeE--EEEECCCCcEEEEecCCC--CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence 99996 699999998887776554 46799999999999999999999999999988777666543 3578999999
Q ss_pred cCCCEEEEeecCCeeeeccccccchhheeeccccCCcee-EEEEEecCCccC
Q psy4754 254 PDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGRSI 304 (304)
Q Consensus 254 p~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 304 (304)
|+|.+|++|+.|++|++|+...+..... ...+... ..+.|+|+|+.|
T Consensus 294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~----l~~h~~~v~~l~~spdg~~l 341 (354)
T 2pbi_B 294 LSGRLLFAGYNDYTINVWDVLKGSRVSI----LFGHENRVSTLRVSPDGTAF 341 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEE----ECCCSSCEEEEEECTTSSCE
T ss_pred CCCCEEEEEECCCcEEEEECCCCceEEE----EECCCCcEEEEEECCCCCEE
Confidence 9999999999999999999866543222 2233333 467888888653
No 30
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.8e-40 Score=281.64 Aligned_cols=243 Identities=16% Similarity=0.153 Sum_probs=199.4
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC--ceeeeeecCCcCcEEEEEECCC--CCeEEEEeCCCceEEEEeee
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK--CCRVNHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~--~~~~~~~~~h~~~V~~l~~s~d--~~~l~sgs~D~~i~~~~wd~ 99 (304)
.|...|.+++|+|+|++||+|+.|++|+|||+.+ .+.+..+.+|.++|.+++|+++ +++|+||+.|+++ ++||+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v--~iWd~ 84 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV--MIWKE 84 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE--EEEEB
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE--EEEEc
Confidence 4455699999999999999999999999999864 4667889999999999999864 8999999999995 78999
Q ss_pred CCCe--eEeEEeccceeeceeeeEEcCC--CCEEEEEeCCCeEEEecCCccc--cceeccCcccceeEEEEcCC------
Q psy4754 100 RADK--EVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSPD------ 167 (304)
Q Consensus 100 ~~~~--~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~------ 167 (304)
..++ .+..+..+ ...+.+++|+|+ +.++++++.|+.|++||+++.. ....+.+|...|.+++|+|+
T Consensus 85 ~~~~~~~~~~~~~h--~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 85 ENGRWSQIAVHAVH--SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp SSSCBCCCEEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred CCCceEEEEEeecC--CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 8653 33333322 235789999997 8899999999999999987653 23456789999999999997
Q ss_pred -------CcEEEEeecCCceEEEEeeecCCc----eEEEeecCceeeeeeEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q psy4754 168 -------GTAFSSGSWDTTLRCRLFDLRADK----EVACYKKDSILFGATSVDFSVSG---RLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 168 -------~~~las~s~d~~i~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~s~~g---~~l~sg~~d~~i~iwd~~~ 233 (304)
++.|++|+.|++| ++||+++.+ ....+..+. ..+.+++|+|++ ++|++|+.|++|++||+.+
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v--~lwd~~~~~~~~~~~~~l~~H~--~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLV--KIWKYNSDAQTYVLESTLEGHS--DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp -------CCEEEEEETTSCE--EEEEEETTTTEEEEEEEECCCS--SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cCCCCCCcceEEEEcCCCcE--EEEEEcCCCceEEEEEEecCCC--CceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 5689999999996 689998765 333444443 468999999995 8999999999999999865
Q ss_pred ce---eeEEe--eccccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 234 CC---RVNHL--MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 234 ~~---~~~~~--~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
.. ....+ .+|...|.+++|+|+|++||+++.|++|++|+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 32 11223 4688999999999999999999999999999864
No 31
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-39 Score=310.61 Aligned_cols=265 Identities=24% Similarity=0.298 Sum_probs=220.3
Q ss_pred CCceeEEeeccccceE---eeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKEV---ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~---~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 78 (304)
.|++||+||+.++... .......|...|.+++|+|++++|++|+.||+|++||+.++..++.+.+|...|.+++|+|
T Consensus 403 ~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~ 482 (694)
T 3dm0_A 403 RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL 482 (694)
T ss_dssp TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC
Confidence 4789999999875321 1122234555699999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEec-cceeeceeeeEEcCCC--CEEEEEeCCCeEEEecCCccccceeccCc
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKK-DSILFGATSVDFSVSG--RLLFAGYNDYTINVWDSLKCCRVNHLMGH 155 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~-~~~~~~~~~~~~s~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 155 (304)
++++|+||+.|++| ++||............ ..+...+.++.|+|++ ..+++++.|+.|++||+.+.+....+.+|
T Consensus 483 ~~~~l~s~s~D~~i--~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h 560 (694)
T 3dm0_A 483 DNRQIVSASRDRTI--KLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH 560 (694)
T ss_dssp TSSCEEEEETTSCE--EEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred CCCEEEEEeCCCEE--EEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 99999999999996 7899865543332211 1222347889999986 58999999999999999988888889999
Q ss_pred ccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q psy4754 156 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 235 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~ 235 (304)
...|.+++|+|+++++++|+.|++| ++||+++++.+..+..+. .+.+++|+|++.++++++ ++.|++||+.++.
T Consensus 561 ~~~v~~v~~spdg~~l~sg~~Dg~i--~iwd~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 561 TGYVSTVAVSPDGSLCASGGKDGVV--LLWDLAEGKKLYSLEANS---VIHALCFSPNRYWLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSBC--EEEETTTTEEEECCBCSS---CEEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeE--EEEECCCCceEEEecCCC---cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence 9999999999999999999999996 689999988776665443 478999999999988876 5679999999988
Q ss_pred eeEEeeccc-------------------cceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 236 RVNHLMGHE-------------------NRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 236 ~~~~~~~h~-------------------~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
.+..+..|. -.+++++|+|+|++|+||+.|++||+|+..
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 877665432 237899999999999999999999999863
No 32
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.4e-39 Score=299.37 Aligned_cols=282 Identities=24% Similarity=0.385 Sum_probs=231.4
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||.+.. .+..+. .+...|.+++|+|+++++++++.||+|++||... ..+..+.+|...|.+++|+|+++
T Consensus 282 ~d~~i~~w~~~~~-~~~~~~--~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~ 357 (577)
T 2ymu_A 282 DDKTVKLWNRNGQ-LLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQ 357 (577)
T ss_dssp TTSCEEEEETTSC-EEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCEEEEEeCCCc-EEEEEe--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCC
Confidence 4678999997654 333332 3445699999999999999999999999999865 45667889999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
+|++|+.|+++ ++||.. .+.+..+..+. ..+.+++|+|+++++++++.|+.|++||. +.+.+..+.+|...|.+
T Consensus 358 ~l~~~~~dg~v--~~~~~~-~~~~~~~~~~~--~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~ 431 (577)
T 2ymu_A 358 TIASASDDKTV--KLWNRN-GQLLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 431 (577)
T ss_dssp EEEEEETTSEE--EEEETT-CCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEE
T ss_pred EEEEEeCCCEE--EEEcCC-CCEEEEecCCC--CCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEE
Confidence 99999999995 689954 45555555433 35788999999999999999999999995 45667788999999999
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 241 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~ 241 (304)
++|+||++.+++++.|+++ ++||.. .+.+..+..+. ..+.+++|+|++++|++++.|++|++||. +++.+..+.
T Consensus 432 ~~~s~d~~~l~~~~~d~~v--~~w~~~-~~~~~~~~~~~--~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~ 505 (577)
T 2ymu_A 432 VAFSPDDQTIASASDDKTV--KLWNRN-GQLLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 505 (577)
T ss_dssp EEECTTSSEEEEEETTSEE--EEEETT-SCEEEEEECCS--SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred EEECCCCCEEEEEcCCCEE--EEEECC-CCEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe
Confidence 9999999999999999996 689964 45555555543 35789999999999999999999999995 677888999
Q ss_pred ccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCcee-EEEEEecCCccC
Q psy4754 242 GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGRSI 304 (304)
Q Consensus 242 ~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 304 (304)
+|...|++|+|+|+|++||+++.|++|++|+...+..+ ....+..+ -.+.|+|+++.|
T Consensus 506 ~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~-----~~~~h~~~v~~~~fs~dg~~l 564 (577)
T 2ymu_A 506 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-----TLTGHSSSVWGVAFSPDGQTI 564 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEE-----EEECCSSCEEEEEECTTSSCE
T ss_pred CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEE-----EEcCCCCCEEEEEEcCCCCEE
Confidence 99999999999999999999999999999996433221 22334444 358899988754
No 33
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.5e-40 Score=288.17 Aligned_cols=265 Identities=18% Similarity=0.245 Sum_probs=221.2
Q ss_pred CCceeEEeeccccceEeeeeccc---cccceeEEEEcCC----CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDS---ILFGATSVDFSVS----GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL 74 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~---~~~~i~~~~~~~~----g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l 74 (304)
++++|++||+.+++.+..+.... +...|++++|+|+ +.+|++|+.||.|++||+.+++.+..+.+|..+|.++
T Consensus 42 ~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 121 (366)
T 3k26_A 42 GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINEL 121 (366)
T ss_dssp ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEE
T ss_pred CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEE
Confidence 46789999999887765554322 3455999999999 6799999999999999999999999999999999999
Q ss_pred EECC-CCCeEEEEeCCCceEEEEeeeCCCeeEeEEec-cceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec
Q psy4754 75 QVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKK-DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 152 (304)
Q Consensus 75 ~~s~-d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 152 (304)
+|+| ++++|++|+.|++| ++||+...+.+..+.. ......+.++.|+|+++++++++.|+.|++||+.+.+....+
T Consensus 122 ~~~~~~~~~l~s~~~dg~i--~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 199 (366)
T 3k26_A 122 KFHPRDPNLLLSVSKDHAL--RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 199 (366)
T ss_dssp EECSSCTTEEEEEETTSCE--EEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHH
T ss_pred EECCCCCCEEEEEeCCCeE--EEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccc
Confidence 9999 89999999999995 7899998888777631 112335789999999999999999999999999876655443
Q ss_pred cC----------------------------cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce------------
Q psy4754 153 MG----------------------------HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE------------ 192 (304)
Q Consensus 153 ~~----------------------------h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~------------ 192 (304)
.. |...|.+++|+ ++.+++++.|+.+ ++||+++.+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i--~~wd~~~~~~~~~~~~~~~~~~ 275 (366)
T 3k26_A 200 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAI--VCWKPGKMEDDIDKIKPSESNV 275 (366)
T ss_dssp HHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEE--EEEEESSTTCCGGGCCTTCCCE
T ss_pred ceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEE--EEEeCCCccccccccccCCcch
Confidence 33 99999999998 6699999999996 6899887643
Q ss_pred --EEEeecCceeeeeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCce----eeEEeecc--ccceEEEEEccCCCEEEEe
Q psy4754 193 --VACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCC----RVNHLMGH--ENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 193 --~~~~~~~~~~~~~~~~~~s~~--g~~l~sg~~d~~i~iwd~~~~~----~~~~~~~h--~~~i~~l~~sp~g~~lasg 262 (304)
+..+..+. ..+.+++|+|+ +++|++|+.|+.|++||+.+++ ....+.+| ...|++++|+|++++|+++
T Consensus 276 ~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 353 (366)
T 3k26_A 276 TILGRFDYSQ--CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAV 353 (366)
T ss_dssp EEEEEEECSS--CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred heeccccccC--CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEE
Confidence 34443333 34678899999 9999999999999999998765 34467777 7999999999999999999
Q ss_pred ecCCeeeecccc
Q psy4754 263 SWDTTLRDEESK 274 (304)
Q Consensus 263 s~D~~i~~~~~~ 274 (304)
+.|+.|++|++.
T Consensus 354 ~~dg~i~iwd~~ 365 (366)
T 3k26_A 354 CDDASIWRWDRL 365 (366)
T ss_dssp ETTSEEEEEEC-
T ss_pred eCCCEEEEEEec
Confidence 999999999874
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-40 Score=295.61 Aligned_cols=270 Identities=14% Similarity=0.233 Sum_probs=224.0
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC----ceeeeeecCCcCcEEEEEECC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK----CCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~----~~~~~~~~~h~~~V~~l~~s~ 78 (304)
|++|++||+.+++.........+...|++++|+|++.+|++|+.||.|++||+.+ .+.+..+.+|...|.+++|+|
T Consensus 44 d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 123 (416)
T 2pm9_A 44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA 123 (416)
T ss_dssp CCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS
T ss_pred CCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcC
Confidence 6789999999886321122223445599999999999999999999999999987 357778889999999999999
Q ss_pred C-CCeEEEEeCCCceEEEEeeeCCCe------eEeEE-eccceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCCccccc
Q psy4754 79 D-GTAFSSGSWDTTLRCRLFDLRADK------EVACY-KKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRV 149 (304)
Q Consensus 79 d-~~~l~sgs~D~~i~~~~wd~~~~~------~~~~~-~~~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~ 149 (304)
+ +++|++++.|++| ++||+...+ ..... ........+.++.|+|+ +.++++++.|+.|++||+.+.+.+
T Consensus 124 ~~~~~l~s~~~dg~v--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 201 (416)
T 2pm9_A 124 KQDNVLASGGNNGEI--FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV 201 (416)
T ss_dssp SSTTBEEEECSSSCE--EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE
T ss_pred CCCCEEEEEcCCCeE--EEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc
Confidence 8 8999999999995 789998765 22221 11112235678999999 789999999999999999988877
Q ss_pred eeccCc------ccceeEEEEcCCC-cEEEEeecCC---ceEEEEeeecCC-ceEEEee-cCceeeeeeEEEEcC-CCCE
Q psy4754 150 NHLMGH------ENRVSCLQVSPDG-TAFSSGSWDT---TLRCRLFDLRAD-KEVACYK-KDSILFGATSVDFSV-SGRL 216 (304)
Q Consensus 150 ~~~~~h------~~~v~~v~~sp~~-~~las~s~d~---~i~i~~~d~~~~-~~~~~~~-~~~~~~~~~~~~~s~-~g~~ 216 (304)
..+..| ...|.+++|+|++ ..+++++.|+ .+ ++||+++. +.+..+. .+. ..+.+++|+| ++++
T Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i--~~~d~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~ 277 (416)
T 2pm9_A 202 IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI--LIWDLRNANTPLQTLNQGHQ--KGILSLDWCHQDEHL 277 (416)
T ss_dssp EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC--CEEETTSTTSCSBCCCSCCS--SCEEEEEECSSCSSC
T ss_pred eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE--EEEeCCCCCCCcEEeecCcc--CceeEEEeCCCCCCe
Confidence 777665 7899999999997 6899999998 86 68999886 3444444 332 4679999999 9999
Q ss_pred EEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCC-CEEEEeecCCeeeeccccccch
Q psy4754 217 LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g-~~lasgs~D~~i~~~~~~~~~~ 278 (304)
|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.|++|++.....
T Consensus 278 l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 278 LLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp EEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred EEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 9999999999999999999999999999999999999999 8999999999999999876553
No 35
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-39 Score=279.74 Aligned_cols=272 Identities=20% Similarity=0.264 Sum_probs=232.9
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++.+..+. .+...|.+++|+|++++|++++.||+|++||+.+++.+..+. |..+|.+++|+|+++
T Consensus 52 ~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 128 (369)
T 3zwl_B 52 KDSSASVWYSLNGERLGTLD--GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGN 128 (369)
T ss_dssp SSSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSS
T ss_pred CCCEEEEEeCCCchhhhhhh--hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCC
Confidence 37889999999998876654 344569999999999999999999999999999998888777 889999999999999
Q ss_pred eEEEEeCC-----CceEEEEeeeCCCeeEe-----------EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc
Q psy4754 82 AFSSGSWD-----TTLRCRLFDLRADKEVA-----------CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 145 (304)
Q Consensus 82 ~l~sgs~D-----~~i~~~~wd~~~~~~~~-----------~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 145 (304)
+|++++.+ +.+ .+||+....... .+..+.....+.++.|+|+++++++++.|+.|++||+.+
T Consensus 129 ~l~~~~~~~~~~~g~i--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 129 YFLAILDNVMKNPGSI--NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp EEEEEECCBTTBCCEE--EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred EEEEecCCccCCCCEE--EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 99999988 885 689986543211 111111111567899999999999999999999999988
Q ss_pred -cccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC
Q psy4754 146 -CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY 224 (304)
Q Consensus 146 -~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~ 224 (304)
...+..+..|...|.+++|+|+++.|++++.|+.+ ++||+++.+.+..+... ..+..++|+|+++++++++.++
T Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i--~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 207 NYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNS--FLVDVSTLQVLKKYETD---CPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE--EEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECCC
T ss_pred CcEeEEEEecCCCceeEEEECCCCCEEEEecCCceE--EEEECCCCceeeeecCC---CCceeEEecCCCceEEEeecCC
Confidence 67777888999999999999999999999999986 68999998887777633 3568999999999999999888
Q ss_pred --------------cEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheee
Q psy4754 225 --------------TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 225 --------------~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
.+++||..+++.+..+.+|...|.+++|+|++++|++++.|++|++|++..++..+...
T Consensus 282 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 354 (369)
T 3zwl_B 282 AKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYD 354 (369)
T ss_dssp -------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCCH
T ss_pred CceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHHH
Confidence 89999999999999999999999999999999999999999999999998876544433
No 36
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-38 Score=277.20 Aligned_cols=242 Identities=21% Similarity=0.241 Sum_probs=195.2
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc--eeeeee-cC-CcCcEEEEEECCCCCeEEEEeCCCceEEEEeee
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHL-MG-HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~--~~~~~~-~~-h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~ 99 (304)
.|...|.+++|+|+ +||+|+.|++|++||+..+ +....+ .+ |..+|.+++|+|++++|++|+.|+++ ++||+
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v--~iw~~ 87 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV--SIWAK 87 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE--EEEEC
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE--EEEEc
Confidence 34456999999987 9999999999999999764 344555 44 99999999999999999999999996 78998
Q ss_pred CCC-------eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc----ccceeccCcccceeEEEEcCCC
Q psy4754 100 RAD-------KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC----CRVNHLMGHENRVSCLQVSPDG 168 (304)
Q Consensus 100 ~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~v~~sp~~ 168 (304)
... +.+..++.+ ...+.+++|+|++++|++|+.|++|++||+... +.+..+.+|...|.+++|+|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~h--~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 165 (330)
T 2hes_X 88 EESADRTFEMDLLAIIEGH--ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165 (330)
T ss_dssp -------CCCEEEEEEC------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS
T ss_pred ccCcCccccceeEEEEcCC--CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC
Confidence 532 233333333 235789999999999999999999999998432 3456778999999999999999
Q ss_pred cEEEEeecCCceEEEEeeecCC--ceEEEeecCceeeeeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCc--------ee
Q psy4754 169 TAFSSGSWDTTLRCRLFDLRAD--KEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKC--------CR 236 (304)
Q Consensus 169 ~~las~s~d~~i~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~~--g~~l~sg~~d~~i~iwd~~~~--------~~ 236 (304)
+.|++++.|+++ ++||.... +.+..+..+. ..+.+++|+|+ +.+|++|+.|++|++||+..+ ..
T Consensus 166 ~~l~s~s~D~~i--~iW~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 166 ALLASSSYDDTV--RIWKDYDDDWECVAVLNGHE--GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp SEEEEEETTSCE--EEEEEETTEEEEEEEECCCS--SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred CEEEEEcCCCeE--EEEECCCCCeeEEEEccCCC--CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence 999999999996 68998765 4455555443 46789999999 779999999999999997654 34
Q ss_pred eEEeec-cccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 237 VNHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 237 ~~~~~~-h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
+..+.+ |..+|.+++|+|++ .|++++.|++|++|+...+
T Consensus 242 ~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 242 EAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred eeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 455555 99999999999765 8999999999999987654
No 37
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=272.84 Aligned_cols=262 Identities=23% Similarity=0.329 Sum_probs=217.8
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
|++|||||+.+++++..+..+.+...|++++|+|++++|++|+.||+|++||+.+++.++.+.+|...+.++++ +++.
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~ 121 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI 121 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCE
Confidence 78999999999999888877776667999999999999999999999999999999999999999999887665 4679
Q ss_pred EEEEeCCCceEEEEeeeCCCe-eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc----ceeccCccc
Q psy4754 83 FSSGSWDTTLRCRLFDLRADK-EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR----VNHLMGHEN 157 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~h~~ 157 (304)
|++|+.++.+ ++|+..... .+..+..+. ..+..+.++++++++++++.|+.|++||+.+++. ......|..
T Consensus 122 l~s~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 197 (318)
T 4ggc_A 122 LSSGSRSGHI--HHHDVRVAEHHVATLSGHS--QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197 (318)
T ss_dssp EEEEETTSEE--EEEETTSSSCEEEEEECCS--SCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCS
T ss_pred EEEEecCCce--EeeecCCCceeEEEEcCcc--CceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCC
Confidence 9999999985 567766543 333333322 2456788999999999999999999999887553 334567888
Q ss_pred ceeEEEEcCCCc-E--EEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe--CCCcEEEEeCC
Q psy4754 158 RVSCLQVSPDGT-A--FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY--NDYTINVWDSL 232 (304)
Q Consensus 158 ~v~~v~~sp~~~-~--las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~--~d~~i~iwd~~ 232 (304)
.|.+++++|++. . +++++.++++ ++||.+........... ..+..+.|+|+++.+++++ .|+.|++||+.
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i--~lwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~ 272 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHI--RIWNVCSGACLSAVDAH---SQVCSILWSPHYKELISGHGFAQNQLVIWKYP 272 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEE--EEEETTTCCEEEEEECS---SCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEE--EEEecccccccccccce---eeeeeeeecccccceEEEEEcCCCEEEEEECC
Confidence 999999999765 3 3466677775 69999887765554433 3467889999999888755 78999999999
Q ss_pred CceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 233 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 233 ~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+++++.++.+|.++|++|+|+|||++|||||.|++||+|+..+
T Consensus 273 ~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 273 TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 9999999999999999999999999999999999999998743
No 38
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-38 Score=284.56 Aligned_cols=264 Identities=19% Similarity=0.313 Sum_probs=225.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++....+... +...|++++|+|++.+|++|+.||.|++||+.+++.+..+.+|...|.+++| +++
T Consensus 111 ~d~~v~lw~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~ 187 (401)
T 4aez_A 111 LERNVYVWNADSGSVSALAETD-ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRH 187 (401)
T ss_dssp ETTEEEEEETTTCCEEEEEECC-TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETT
T ss_pred CCCeEEEeeCCCCcEeEeeecC-CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCC
Confidence 4789999999999877655543 4455999999999999999999999999999999999999999999999999 467
Q ss_pred eEEEEeCCCceEEEEeeeCC-CeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCccccee
Q psy4754 82 AFSSGSWDTTLRCRLFDLRA-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 160 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 160 (304)
.|++|+.|+.+ ++||+.. ......+..+. ..+.++.|+|++.++++|+.|+.|++||+.+...+..+.+|...|.
T Consensus 188 ~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~ 263 (401)
T 4aez_A 188 VLSSGSRSGAI--HHHDVRIANHQIGTLQGHS--SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVK 263 (401)
T ss_dssp EEEEEETTSEE--EEEETTSSSCEEEEEECCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCC
T ss_pred EEEEEcCCCCE--EEEecccCcceeeEEcCCC--CCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEE
Confidence 99999999995 7899984 44455554433 3578899999999999999999999999998888888889999999
Q ss_pred EEEEcCCC-cEEEEee--cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEE--eCCCcEEEEeCCCce
Q psy4754 161 CLQVSPDG-TAFSSGS--WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG--YNDYTINVWDSLKCC 235 (304)
Q Consensus 161 ~v~~sp~~-~~las~s--~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg--~~d~~i~iwd~~~~~ 235 (304)
+++|+|++ ..+++++ .|+.+ ++||+++++.+..+.... .+.+++|+|++++++++ +.|+.|++||+.++.
T Consensus 264 ~~~~~p~~~~ll~~~~gs~d~~i--~i~d~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 264 AVAWCPWQSNLLATGGGTMDKQI--HFWNAATGARVNTVDAGS---QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338 (401)
T ss_dssp EEEECTTSTTEEEEECCTTTCEE--EEEETTTCCEEEEEECSS---CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE
T ss_pred EEEECCCCCCEEEEecCCCCCEE--EEEECCCCCEEEEEeCCC---cEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc
Confidence 99999976 5677765 68885 699999988877775443 57899999999999994 489999999998854
Q ss_pred e--eEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 236 R--VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 236 ~--~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
. ...+.+|...|.+++|+|+|.+|++++.|++|++|+...+.
T Consensus 339 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 339 LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 4 44477899999999999999999999999999999987654
No 39
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.8e-38 Score=275.61 Aligned_cols=270 Identities=21% Similarity=0.325 Sum_probs=210.0
Q ss_pred ccccceeEEEE-----cC-CCCEEEEeeCCCcEEEEeCCC-------ceeeeeecCCcCcEEEEEECCCCCeEEEEeCCC
Q psy4754 24 SILFGATSVDF-----SV-SGRLLFAGYNDYTINVWDSLK-------CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 90 (304)
Q Consensus 24 ~~~~~i~~~~~-----~~-~g~~l~tg~~dg~v~iwd~~~-------~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~ 90 (304)
.|...|++++| ++ ++++|+||+.|++|++||+.+ +.....+.+|...|.+++|+|++++|+||+.|+
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~ 98 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK 98 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence 34555999999 76 899999999999999999864 345667889999999999999999999999999
Q ss_pred ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce--eccCcccceeEEEEcCCC
Q psy4754 91 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN--HLMGHENRVSCLQVSPDG 168 (304)
Q Consensus 91 ~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~v~~sp~~ 168 (304)
++ ++||+.+++.+..+..+. ..+.+++|+|+++++++++.|+.|++||+....... ...+|...|.+++|+|++
T Consensus 99 ~v--~lwd~~~~~~~~~~~~h~--~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 174 (343)
T 2xzm_R 99 TL--RLWDLRTGTTYKRFVGHQ--SEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIM 174 (343)
T ss_dssp EE--EEEETTSSCEEEEEECCC--SCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCC
T ss_pred cE--EEEECCCCcEEEEEcCCC--CcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccc
Confidence 95 789999988877776543 357899999999999999999999999987433221 234799999999999987
Q ss_pred ----------cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-ceee
Q psy4754 169 ----------TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRV 237 (304)
Q Consensus 169 ----------~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~-~~~~ 237 (304)
..+++++.|+++ ++||. ..+....+..+. ..+.+++|+|+|++|++|+.|++|++||+.+ ....
T Consensus 175 ~~~~~~~~~~~~l~s~~~d~~i--~iwd~-~~~~~~~~~~h~--~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~ 249 (343)
T 2xzm_R 175 KSANKVQPFAPYFASVGWDGRL--KVWNT-NFQIRYTFKAHE--SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ 249 (343)
T ss_dssp CSCSCCCSSCCEEEEEETTSEE--EEEET-TTEEEEEEECCS--SCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS
T ss_pred ccccccCCCCCEEEEEcCCCEE--EEEcC-CCceeEEEcCcc--ccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 789999999996 68994 344455555443 4679999999999999999999999999843 3333
Q ss_pred EEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhh--eeecc-------ccCCcee-EEEEEecCCccC
Q psy4754 238 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQY--LLRSR-------ITKPTQG-LTVYFQDRGRSI 304 (304)
Q Consensus 238 ~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~--~~~~~-------~~~~~~~-~~~~~~~~~~~~ 304 (304)
..+ .+...|.+++|+|++.++++| .|+.|++|+...+.... .++.. ...+... ..++++|+|+.|
T Consensus 250 ~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 250 REF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL 324 (343)
T ss_dssp EEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred eee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence 333 356679999999999887655 68899999986544322 11110 0012222 468899988753
No 40
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.2e-39 Score=286.60 Aligned_cols=268 Identities=15% Similarity=0.119 Sum_probs=225.8
Q ss_pred CCceeEEeeccccc------eEeeeeccccccceeEEEEcCC----C---CEEEEeeCCCcEEEEeCCCcee-----eee
Q psy4754 2 GKNHCRLFDLRADK------EVACYKKDSILFGATSVDFSVS----G---RLLFAGYNDYTINVWDSLKCCR-----VNH 63 (304)
Q Consensus 2 ~~~~v~~wd~~~~~------~~~~~~~~~~~~~i~~~~~~~~----g---~~l~tg~~dg~v~iwd~~~~~~-----~~~ 63 (304)
.|++|++||+.+++ ....+. .+...|++++|+|+ + .+|++++.||.|++||+.+++. +..
T Consensus 34 ~dg~i~iw~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 111 (397)
T 1sq9_A 34 GDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 111 (397)
T ss_dssp TTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE
T ss_pred CCCEEEEEECCCcccccCCCcceEEe--cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee
Confidence 47899999999987 444333 34456999999999 9 9999999999999999988776 778
Q ss_pred ecCC-----cCcEEEEEEC----CCCCe-EEEEeCCCceEEEEeeeCC------CeeEe-----EEec-----cceeece
Q psy4754 64 LMGH-----ENRVSCLQVS----PDGTA-FSSGSWDTTLRCRLFDLRA------DKEVA-----CYKK-----DSILFGA 117 (304)
Q Consensus 64 ~~~h-----~~~V~~l~~s----~d~~~-l~sgs~D~~i~~~~wd~~~------~~~~~-----~~~~-----~~~~~~~ 117 (304)
+..| ...|.+++|+ |++++ |++++.|+.+ ++||+.. .+.+. .+.. ......+
T Consensus 112 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 189 (397)
T 1sq9_A 112 LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT--YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 189 (397)
T ss_dssp ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCE--EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCC
T ss_pred ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcE--EEEeCCccccccccceeeccCcceeeeeeccccCCCCCc
Confidence 8888 5999999999 99999 9999999995 7899987 44444 4422 1122346
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC---c---ccceeEEEEcCCCcEEEEeecC---CceEEEEeeec
Q psy4754 118 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG---H---ENRVSCLQVSPDGTAFSSGSWD---TTLRCRLFDLR 188 (304)
Q Consensus 118 ~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---h---~~~v~~v~~sp~~~~las~s~d---~~i~i~~~d~~ 188 (304)
.+++|+|++ ++++++.|+.|++||+++.+.+..+.. | ...|.+++|+|++++|++++.| +.+ ++||++
T Consensus 190 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i--~i~d~~ 266 (397)
T 1sq9_A 190 TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI--TLYETE 266 (397)
T ss_dssp CEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEE--EEEETT
T ss_pred eEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceE--EEEECC
Confidence 889999999 999999999999999998888888888 9 9999999999999999999999 875 699999
Q ss_pred CCceEEEeecCc-----------eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee------cc--------
Q psy4754 189 ADKEVACYKKDS-----------ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM------GH-------- 243 (304)
Q Consensus 189 ~~~~~~~~~~~~-----------~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~------~h-------- 243 (304)
+.+.+..+.... ....+.+++|+|++++|++++.|+.|++||+.+++.+..+. +|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence 988877776510 12467899999999999999999999999999999999999 88
Q ss_pred -------ccceEEEEEccCC----------CEEEEeecCCeeeecccccc
Q psy4754 244 -------ENRVSCLQVSPDG----------TAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 244 -------~~~i~~l~~sp~g----------~~lasgs~D~~i~~~~~~~~ 276 (304)
..+|.+++|+|++ .+|++|+.|+.|++|+.+.+
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999997653
No 41
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.3e-40 Score=283.51 Aligned_cols=243 Identities=16% Similarity=0.118 Sum_probs=198.2
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce--eeeeecCCcCcEEEEEECC--CCCeEEEEeCCCceEEEEeeeC
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSP--DGTAFSSGSWDTTLRCRLFDLR 100 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~--d~~~l~sgs~D~~i~~~~wd~~ 100 (304)
|...|++++|+|+|++||+|+.|++|++||+.++. .+..+.+|.++|.+++|++ ++++|+||+.|+++ ++||+.
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v--~iWd~~ 89 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV--IIWREE 89 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE--EEECCS
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE--EEEECC
Confidence 44559999999999999999999999999998764 4677899999999999986 48999999999995 789998
Q ss_pred CCe--eEeEEeccceeeceeeeEEcCC--CCEEEEEeCCCeEEEecCCccc---cceeccCcccceeEEEEcCC------
Q psy4754 101 ADK--EVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCC---RVNHLMGHENRVSCLQVSPD------ 167 (304)
Q Consensus 101 ~~~--~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~v~~sp~------ 167 (304)
+++ ....+..+ ...+.+++|+|+ +.++++|+.|+.|++||+.+.. ....+.+|...|.+++|+|+
T Consensus 90 ~~~~~~~~~~~~h--~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 90 NGTWEKSHEHAGH--DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp SSCCCEEEEECCC--SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCcceEEEEccCC--CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 753 33333332 235789999998 7899999999999999987642 23456789999999999997
Q ss_pred -----------CcEEEEeecCCceEEEEeeecCC---ceEEEeecCceeeeeeEEEEcCCC----CEEEEEeCCCcEEEE
Q psy4754 168 -----------GTAFSSGSWDTTLRCRLFDLRAD---KEVACYKKDSILFGATSVDFSVSG----RLLFAGYNDYTINVW 229 (304)
Q Consensus 168 -----------~~~las~s~d~~i~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~s~~g----~~l~sg~~d~~i~iw 229 (304)
++.|++|+.|++| ++||++.. +.+..+..+. ..+.+++|+|++ ++|++|+.|++|++|
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v--~lWd~~~~~~~~~~~~l~~h~--~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLI--KLWKEEEDGQWKEEQKLEAHS--DWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBC--CEEEECTTSCEEEEECCBCCS--SCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred cccccccCccccceEEEecCCCeE--EEEEeCCCCccceeeecccCC--CceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 4689999999996 68999754 2344444443 468999999997 899999999999999
Q ss_pred eCCCc---e-eeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 230 DSLKC---C-RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 230 d~~~~---~-~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
++.+. . ....+.+|.+.|++++|+|++.+||+|+.|++|++|+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 98652 1 2234567899999999999999999999999999998653
No 42
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-38 Score=282.23 Aligned_cols=265 Identities=17% Similarity=0.189 Sum_probs=224.7
Q ss_pred CCceeEEeec----cccc------eEeeeecccc--------ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeee
Q psy4754 2 GKNHCRLFDL----RADK------EVACYKKDSI--------LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 63 (304)
Q Consensus 2 ~~~~v~~wd~----~~~~------~~~~~~~~~~--------~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~ 63 (304)
.|++|++||+ .+++ ....+..... ...|++++|+|++++|++|+.||.|++|| .+++.+..
T Consensus 66 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~ 144 (425)
T 1r5m_A 66 KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNV 144 (425)
T ss_dssp TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEE
T ss_pred CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeee
Confidence 4689999999 8887 4444444322 33699999999999999999999999999 56778888
Q ss_pred ecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc-------------------------------
Q psy4754 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS------------------------------- 112 (304)
Q Consensus 64 ~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~------------------------------- 112 (304)
+.+|..+|.+++|+|++++|++++.|+.+ ++||+.+.+.+..+....
T Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (425)
T 1r5m_A 145 LNFHRAPIVSVKWNKDGTHIISMDVENVT--ILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVI 222 (425)
T ss_dssp ECCCCSCEEEEEECTTSSEEEEEETTCCE--EEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEE
T ss_pred ccCCCccEEEEEECCCCCEEEEEecCCeE--EEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEE
Confidence 89999999999999999999999999995 689998766554432111
Q ss_pred -----------------------eeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCc
Q psy4754 113 -----------------------ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 169 (304)
Q Consensus 113 -----------------------~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~ 169 (304)
....+.++.|+|+++++++++.|+.|++||+.+.+.+..+.+|...|.+++|+|++
T Consensus 223 ~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~- 301 (425)
T 1r5m_A 223 PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD- 301 (425)
T ss_dssp ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-
T ss_pred EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-
Confidence 01235688999999999999999999999999888888888999999999999999
Q ss_pred EEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce--------------
Q psy4754 170 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-------------- 235 (304)
Q Consensus 170 ~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~-------------- 235 (304)
.+++++.|+.+ ++||+++.+.+..+..+. ..+.+++|+|++++|++++.|+.|++||+.++.
T Consensus 302 ~l~~~~~d~~i--~i~d~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 377 (425)
T 1r5m_A 302 KVISCSMDGSV--RLWSLKQNTLLALSIVDG--VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGIL 377 (425)
T ss_dssp EEEEEETTSEE--EEEETTTTEEEEEEECTT--CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-------------
T ss_pred EEEEEeCCCcE--EEEECCCCcEeEecccCC--ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccccc
Confidence 99999999986 699999988877776544 357899999999999999999999999998887
Q ss_pred ------eeEEeecccc--ceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 236 ------RVNHLMGHEN--RVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 236 ------~~~~~~~h~~--~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
.+..+.+|.. .|.+++|+|++++|++++.|+.|++|+++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 378 NPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8888999977 99999999999999999999999999874
No 43
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-38 Score=282.74 Aligned_cols=268 Identities=23% Similarity=0.301 Sum_probs=213.7
Q ss_pred eEEeeccccceEee--eeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcC--------------
Q psy4754 6 CRLFDLRADKEVAC--YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-------------- 69 (304)
Q Consensus 6 v~~wd~~~~~~~~~--~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~-------------- 69 (304)
..+|+....+.... .....|...|.+++|+|+|++||+|+ ++++++|++.+++.+..+..|..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (393)
T 1erj_A 42 YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 120 (393)
T ss_dssp EEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------
T ss_pred EEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccC
Confidence 44666655433211 11112444599999999999999986 78999999999888777765532
Q ss_pred ----cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc
Q psy4754 70 ----RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 145 (304)
Q Consensus 70 ----~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 145 (304)
.|.+++|+|++++|++|+.|++| ++||+.+.+.+..+..+. ..+.+++|+|+++++++++.|+.|++||+++
T Consensus 121 ~~~~~v~~v~~s~dg~~l~s~~~d~~i--~iwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~ 196 (393)
T 1erj_A 121 SSDLYIRSVCFSPDGKFLATGAEDRLI--RIWDIENRKIVMILQGHE--QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196 (393)
T ss_dssp CCCCBEEEEEECTTSSEEEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCceeEEEEEECCCCCEEEEEcCCCeE--EEEECCCCcEEEEEccCC--CCEEEEEEcCCCCEEEEecCCCcEEEEECCC
Confidence 49999999999999999999995 789999888877766543 3578999999999999999999999999988
Q ss_pred cccceeccCcccceeEEEEcC-CCcEEEEeecCCceEEEEeeecCCceEEEeec-----CceeeeeeEEEEcCCCCEEEE
Q psy4754 146 CCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKK-----DSILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 146 ~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~s~~g~~l~s 219 (304)
++....+. +...+.+++|+| +++.+++|+.|+++ ++||+++++.+..+.. ..+...+.+++|+|+|++|++
T Consensus 197 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v--~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s 273 (393)
T 1erj_A 197 GQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAV--RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273 (393)
T ss_dssp TEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCE--EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred CeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcE--EEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence 77665544 567899999999 89999999999996 6999998876655521 112245789999999999999
Q ss_pred EeCCCcEEEEeCCCc------------eeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhhe
Q psy4754 220 GYNDYTINVWDSLKC------------CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYL 281 (304)
Q Consensus 220 g~~d~~i~iwd~~~~------------~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~ 281 (304)
|+.|++|++||+.+. .....+.+|...|.+++|+|++.+|++|+.|++|++|+...+.....
T Consensus 274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~ 347 (393)
T 1erj_A 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 347 (393)
T ss_dssp EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 999999999998652 34567889999999999999999999999999999999877654433
No 44
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.2e-38 Score=271.86 Aligned_cols=267 Identities=22% Similarity=0.287 Sum_probs=220.8
Q ss_pred CCceeEEeeccccceE---eeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKEV---ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~---~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 78 (304)
.|++|||||+.+++.. +......+...|.+++|+|+|++|++|+.|+.|++|+............+...+..+.+++
T Consensus 59 ~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (340)
T 4aow_A 59 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 138 (340)
T ss_dssp TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEee
Confidence 4789999999886532 2222234455699999999999999999999999999999888888888899999999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCC--CCEEEEEeCCCeEEEecCCccccceeccCcc
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 156 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 156 (304)
++++|++|+.|+.+ ++||+........ ........+..+.|+++ ..++++++.|+.|++||+.+.+.+..+.+|.
T Consensus 139 ~~~~l~s~s~d~~~--~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~ 215 (340)
T 4aow_A 139 DNRQIVSGSRDKTI--KLWNTLGVCKYTV-QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT 215 (340)
T ss_dssp TSSCEEEEETTSCE--EEECTTSCEEEEE-CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred cCccceeecCCCeE--EEEEeCCCceEEE-EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC
Confidence 99999999999995 6899876554332 22222234567778765 4578899999999999999988888899999
Q ss_pred cceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
.+|.+++|+|++++|++|+.|+++ ++||+++.+.+..+..+. .+.++.|+|++.++++ +.|+.|++||+.++..
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg~i--~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~-~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDGQA--MLWDLNEGKHLYTLDGGD---IINALCFSPNRYWLCA-ATGPSIKIWDLEGKII 289 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEE--EEEETTTTEEEEEEECSS---CEEEEEECSSSSEEEE-EETTEEEEEETTTTEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeE--EEEEeccCceeeeecCCc---eEEeeecCCCCceeec-cCCCEEEEEECCCCeE
Confidence 999999999999999999999996 689999988887776554 4688999999876654 5689999999988766
Q ss_pred eEEee---------ccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 237 VNHLM---------GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 237 ~~~~~---------~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+..+. +|...|++++|+|||++|+||+.|++|++|++..+.
T Consensus 290 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 290 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 65543 688999999999999999999999999999987654
No 45
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.2e-39 Score=282.01 Aligned_cols=266 Identities=17% Similarity=0.234 Sum_probs=217.8
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCC---CCEEEEeeCCCcEEEEeCCCce-eeeeecCCcCcEEEEE--
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVS---GRLLFAGYNDYTINVWDSLKCC-RVNHLMGHENRVSCLQ-- 75 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~---g~~l~tg~~dg~v~iwd~~~~~-~~~~~~~h~~~V~~l~-- 75 (304)
+|++|++||+.+++....... .+...|++++|+|+ +.+|++|+.||.|++||+.+++ .+..+.+|...|.+++
T Consensus 42 ~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 120 (357)
T 3i2n_A 42 GTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGI 120 (357)
T ss_dssp CCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEE
T ss_pred CCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeec
Confidence 489999999999876543332 23456999999998 6999999999999999999887 7888899999999995
Q ss_pred ----ECCCCCeEEEEeCCCceEEEEeeeCCCe-eEeEEeccce--eeceeeeE----EcCCCCEEEEEeCCCeEEEecCC
Q psy4754 76 ----VSPDGTAFSSGSWDTTLRCRLFDLRADK-EVACYKKDSI--LFGATSVD----FSVSGRLLFAGYNDYTINVWDSL 144 (304)
Q Consensus 76 ----~s~d~~~l~sgs~D~~i~~~~wd~~~~~-~~~~~~~~~~--~~~~~~~~----~s~~~~~l~sg~~dg~i~iwd~~ 144 (304)
|+|++++|++++.|+++ ++||+.... .+..+..+.. ...+.++. |++++.++++++.|+.|++||++
T Consensus 121 ~~~~~s~~~~~l~~~~~d~~i--~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (357)
T 3i2n_A 121 GGLGIGEGAPEIVTGSRDGTV--KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR 198 (357)
T ss_dssp SGGGCC-CCCEEEEEETTSCE--EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT
T ss_pred cccccCCCccEEEEEeCCCeE--EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc
Confidence 57899999999999995 789998765 4555543221 12345565 78999999999999999999998
Q ss_pred ccccceeccCcccceeEEEEcC---CCcEEEEeecCCceEEEEeeecCCceEEEee-----cCceeeeeeEEEEcCCCC-
Q psy4754 145 KCCRVNHLMGHENRVSCLQVSP---DGTAFSSGSWDTTLRCRLFDLRADKEVACYK-----KDSILFGATSVDFSVSGR- 215 (304)
Q Consensus 145 ~~~~~~~~~~h~~~v~~v~~sp---~~~~las~s~d~~i~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~s~~g~- 215 (304)
+.+.. ....|...|.+++|+| +++.+++++.|+.+ ++||+++.+....+. .+ ...+.+++|+|+++
T Consensus 199 ~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~ 273 (357)
T 3i2n_A 199 NMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEGKF--HVFDMRTQHPTKGFASVSEKAH--KSTVWQVRHLPQNRE 273 (357)
T ss_dssp TTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTTEE--EEEEEEEEETTTEEEEEEEECC--SSCEEEEEEETTEEE
T ss_pred cCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCCeE--EEEeCcCCCcccceeeeccCCC--cCCEEEEEECCCCCc
Confidence 87654 3467889999999999 99999999999986 689988765433332 33 24679999999999
Q ss_pred EEEEEeCCCcEEEEeCCCc-------------------eeeEEeeccccceEEEEEccCCCEEE-EeecCCeeeeccccc
Q psy4754 216 LLFAGYNDYTINVWDSLKC-------------------CRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRDEESKN 275 (304)
Q Consensus 216 ~l~sg~~d~~i~iwd~~~~-------------------~~~~~~~~h~~~i~~l~~sp~g~~la-sgs~D~~i~~~~~~~ 275 (304)
+|++|+.|+.|++||+.++ ..+..+.+|.++|++++|+|++++|+ +++.|+.|++|+..+
T Consensus 274 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 274 LFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred EEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 8999999999999997643 46777889999999999999999998 899999999998764
No 46
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.7e-37 Score=268.68 Aligned_cols=261 Identities=18% Similarity=0.245 Sum_probs=221.3
Q ss_pred CCceeEEeeccccceE---eeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce--eeeeecCCcCcEEEEEE
Q psy4754 2 GKNHCRLFDLRADKEV---ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQV 76 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~---~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~ 76 (304)
+|++|++||+.+++.. ..+....+...|.+++|+|++++|++++.||.|++||+.+++ ....+..|...|.+++|
T Consensus 70 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 149 (337)
T 1gxr_A 70 GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149 (337)
T ss_dssp CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred CCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence 4789999999987532 222222345569999999999999999999999999998876 56667889999999999
Q ss_pred CCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcc
Q psy4754 77 SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 156 (304)
Q Consensus 77 s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 156 (304)
+|++++|++++.|+.+ ++||+.+.+.+..++.+. ..+.++.|+|+++++++++.|+.|++||+.+.+.+..+ .|.
T Consensus 150 ~~~~~~l~~~~~dg~v--~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~ 224 (337)
T 1gxr_A 150 SPDSKVCFSCCSDGNI--AVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFT 224 (337)
T ss_dssp CTTSSEEEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECS
T ss_pred CCCCCEEEEEeCCCcE--EEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCC
Confidence 9999999999999995 789999888877766543 25678999999999999999999999999887766554 577
Q ss_pred cceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
..+.+++|+|+++.+++++.|+.+ ++||+++.+... +..+ ...+.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 225 ~~v~~~~~s~~~~~l~~~~~~~~i--~~~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGMESSNV--EVLHVNKPDKYQ-LHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCE--EEEETTSSCEEE-ECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred CceEEEEECCCCCEEEEEcCCCcE--EEEECCCCCeEE-EcCC--ccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence 889999999999999999999986 689998876543 3222 24678999999999999999999999999998877
Q ss_pred eEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
+.. ..|...|.+++|+|++++|++++.|+.|++|++
T Consensus 300 ~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 300 IFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 744 458899999999999999999999999999985
No 47
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-39 Score=298.08 Aligned_cols=266 Identities=11% Similarity=0.043 Sum_probs=206.3
Q ss_pred CCceeEEeeccccceEeeee--ccccccceeEEEEcCC------CCEEEEeeCCCcEEEEeCCCcee-----------ee
Q psy4754 2 GKNHCRLFDLRADKEVACYK--KDSILFGATSVDFSVS------GRLLFAGYNDYTINVWDSLKCCR-----------VN 62 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~--~~~~~~~i~~~~~~~~------g~~l~tg~~dg~v~iwd~~~~~~-----------~~ 62 (304)
.|++|||||+.++++..... ...+...|.+++|+|+ +.+||+|+.||+|++||+.++.. ..
T Consensus 181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~ 260 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSL 260 (524)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSE
T ss_pred CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceE
Confidence 57899999999886532111 1122334999999996 57999999999999999976532 23
Q ss_pred eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe-eEeEEeccceeeceeee--EEcCCC-CEEEEEeCCCeE
Q psy4754 63 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK-EVACYKKDSILFGATSV--DFSVSG-RLLFAGYNDYTI 138 (304)
Q Consensus 63 ~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~-~~~~~~~~~~~~~~~~~--~~s~~~-~~l~sg~~dg~i 138 (304)
.+.+|..+|++++|+++ ..|++|+.|++| ++||+.+.. +...+..+. ..+.++ .|++++ .+|++|+.|++|
T Consensus 261 ~l~~h~~~v~sv~~s~~-~~lasgs~DgtV--~lWD~~~~~~~~~~~~~H~--~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 261 TLSLADSLITTFDFLSP-TTVVCGFKNGFV--AEFDLTDPEVPSFYDQVHD--SYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp EECCTTTCEEEEEESSS-SEEEEEETTSEE--EEEETTBCSSCSEEEECSS--SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred EEEcCCCCEEEEEecCC-CeEEEEeCCCEE--EEEECCCCCCceEEeeccc--ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 57789999999999986 489999999995 799998653 333344332 246677 578887 899999999999
Q ss_pred EEecCCccccceeccCccc--ceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCE
Q psy4754 139 NVWDSLKCCRVNHLMGHEN--RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL 216 (304)
Q Consensus 139 ~iwd~~~~~~~~~~~~h~~--~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 216 (304)
++||+++.+.+..+.+|.. .|.+++|+|+++.+++++.|+++ ++||++....+..+..+. ..|++++|+|+|++
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv--~lwd~~~~~~~~~l~gH~--~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSL--RAVPSRAAFAVHPLVSRE--TTITAIGVSRLHPM 411 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEE--EEEETTCTTCCEEEEECS--SCEEEEECCSSCCB
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcE--EEEECcccccceeeecCC--CceEEEEeCCCCCe
Confidence 9999998877777777754 58899999999999999999985 699999887766665543 46899999999999
Q ss_pred EEEEeCCCcEEEEeCCC--------------------------------------------ceeeEEeeccccceEEEEE
Q psy4754 217 LFAGYNDYTINVWDSLK--------------------------------------------CCRVNHLMGHENRVSCLQV 252 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~--------------------------------------------~~~~~~~~~h~~~i~~l~~ 252 (304)
|++|+.|++|++||... +..+.++.+|..+|++|+|
T Consensus 412 l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vaf 491 (524)
T 2j04_B 412 VLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKW 491 (524)
T ss_dssp CEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEE
T ss_pred EEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEEC
Confidence 99999999999987321 1223445678999999999
Q ss_pred ccCC---CEEEEeecCCeeeecccccc
Q psy4754 253 SPDG---TAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 253 sp~g---~~lasgs~D~~i~~~~~~~~ 276 (304)
+|++ ..+|+|+.|++||+|+++.+
T Consensus 492 sp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 492 NETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCCCCccHHHHhhccCceEEEEEcccc
Confidence 9995 49999999999999987644
No 48
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.5e-38 Score=280.79 Aligned_cols=266 Identities=15% Similarity=0.161 Sum_probs=200.1
Q ss_pred CceeEEeeccccce--------EeeeeccccccceeEEEEcCCCCEEEEe-----------eCCCcEEEEeCCCcee---
Q psy4754 3 KNHCRLFDLRADKE--------VACYKKDSILFGATSVDFSVSGRLLFAG-----------YNDYTINVWDSLKCCR--- 60 (304)
Q Consensus 3 ~~~v~~wd~~~~~~--------~~~~~~~~~~~~i~~~~~~~~g~~l~tg-----------~~dg~v~iwd~~~~~~--- 60 (304)
+++||+|++..+.. ........+...+.++++. +..+++| +.|+++|+|+..+...
T Consensus 42 ~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~ 119 (365)
T 4h5i_A 42 PNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE 119 (365)
T ss_dssp CEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE
T ss_pred CCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE
Confidence 45799999987632 1112223333446777664 5556554 5678899999764321
Q ss_pred -ee-----eecCCcCcEEEEEECCCCCeEEE--EeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE
Q psy4754 61 -VN-----HLMGHENRVSCLQVSPDGTAFSS--GSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 132 (304)
Q Consensus 61 -~~-----~~~~h~~~V~~l~~s~d~~~l~s--gs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg 132 (304)
.. ....+...+++++|+|||++|++ ++.|++| ++||+.+.+++..++.+. .+.+++|+|++++++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i--~iwd~~~~~~~~~~~~~~---~V~~v~fspdg~~l~s~ 194 (365)
T 4h5i_A 120 FLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIM--RIIDPSDLTEKFEIETRG---EVKDLHFSTDGKVVAYI 194 (365)
T ss_dssp EEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEE--EEEETTTTEEEEEEECSS---CCCEEEECTTSSEEEEE
T ss_pred EeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEE--EEeECCCCcEEEEeCCCC---ceEEEEEccCCceEEec
Confidence 11 12235567999999999998764 4578885 799999998887776433 46799999999999999
Q ss_pred eCCCeEEEecCCccccc--eeccCcccceeEEEEcCCCcEEEEeecCCc--eEEEEeeecCCceE----EEeecCceeee
Q psy4754 133 YNDYTINVWDSLKCCRV--NHLMGHENRVSCLQVSPDGTAFSSGSWDTT--LRCRLFDLRADKEV----ACYKKDSILFG 204 (304)
Q Consensus 133 ~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~v~~sp~~~~las~s~d~~--i~i~~~d~~~~~~~----~~~~~~~~~~~ 204 (304)
+.++.+ +|+..++..+ ....+|...|.+++|+|+++.+++++.|+. +.+++|++...... ..+..+ ...
T Consensus 195 s~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~ 271 (365)
T 4h5i_A 195 TGSSLE-VISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR--FKG 271 (365)
T ss_dssp CSSCEE-EEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS--CSC
T ss_pred cceeEE-EEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC--CCC
Confidence 866554 5554544433 235678899999999999999999998874 34578888765432 122222 246
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe-eccccceEEEEEccCCCEEEEeecCCeeeeccccccch
Q psy4754 205 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 205 ~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~-~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~ 278 (304)
+++++|+|+|++||+|+.|++|+|||+.+++++.++ .+|..+|++|+|||||++|||||.|++||+|+++..+.
T Consensus 272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~ 346 (365)
T 4h5i_A 272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYA 346 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTT
T ss_pred eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 899999999999999999999999999999999885 78999999999999999999999999999999977663
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.3e-38 Score=284.91 Aligned_cols=262 Identities=16% Similarity=0.210 Sum_probs=217.1
Q ss_pred CceeEEeeccccceEeeeeccccccc-eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFG-ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~-i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
|++|++||+.+++....+. .+. +....|++++++|++|+.||.|++||+.+++....+.+|...|.+++|+|+++
T Consensus 77 d~~v~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 152 (420)
T 3vl1_A 77 DGHDFLFNTIIRDGSKMLK----RADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGE 152 (420)
T ss_dssp TTEEEEEECCSEETTTTSC----SCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSS
T ss_pred CCcEEEEEecccceeeEEe----cCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCC
Confidence 6899999999876533222 234 45557899999999999999999999999988888889999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC---cccc
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG---HENR 158 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---h~~~ 158 (304)
+|++|+.|+++ ++||+.+.+.+..+..+. ..+.+++|+|+++++++++.|+.|++||+++.+.+..+.. |...
T Consensus 153 ~l~s~s~d~~i--~iwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 228 (420)
T 3vl1_A 153 ALISSSQDMQL--KIWSVKDGSNPRTLIGHR--ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG 228 (420)
T ss_dssp EEEEEETTSEE--EEEETTTCCCCEEEECCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCC
T ss_pred EEEEEeCCCeE--EEEeCCCCcCceEEcCCC--CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCC
Confidence 99999999995 789999888777776543 3578999999999999999999999999998887776654 3334
Q ss_pred ---------------------eeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCC-E
Q psy4754 159 ---------------------VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-L 216 (304)
Q Consensus 159 ---------------------v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~ 216 (304)
+.+++|+|+++.+++++.|+.+ ++||+++.+....+... ....+.+++|+|+++ +
T Consensus 229 v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 305 (420)
T 3vl1_A 229 VNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVI--TVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANY 305 (420)
T ss_dssp EEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCE--EEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTE
T ss_pred ccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeE--EEEECCCCceeEEcccc-cCCCceeEEEeCCCCCE
Confidence 4445568899999999999996 69999988876665432 124679999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCcee-eEEeec-cccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 217 LFAGYNDYTINVWDSLKCCR-VNHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~~~~-~~~~~~-h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
|++|+.|+.|++||+.++.. +..+.+ |...|.++.+ |++.+|++++.|++|++|++..+
T Consensus 306 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 306 IYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred EEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 99999999999999988644 667776 6778888855 57899999999999999998663
No 50
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-37 Score=268.86 Aligned_cols=264 Identities=22% Similarity=0.284 Sum_probs=217.9
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee---eec--CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN---HLM--GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~---~~~--~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~ 99 (304)
+...|++++|+|++++|++++ ||.|++||+.+++... .+. +|...|.+++|+|++++|++++.|+.+ ++||+
T Consensus 50 h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i--~~~d~ 126 (337)
T 1gxr_A 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL--SIWDL 126 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE--EEEEC
T ss_pred CCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcE--EEEEC
Confidence 445699999999999999998 9999999998765332 232 799999999999999999999999985 78999
Q ss_pred CCCee--EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecC
Q psy4754 100 RADKE--VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 177 (304)
Q Consensus 100 ~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d 177 (304)
...+. ...+..+ ...+.++.|+|+++++++++.|+.|++||+.+.+.+..+.+|...|.+++|+|+++.+++++.|
T Consensus 127 ~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 127 AAPTPRIKAELTSS--APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp CCC--EEEEEEECS--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCcceeeecccC--CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 87663 3333322 2346789999999999999999999999999988888889999999999999999999999999
Q ss_pred CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCC
Q psy4754 178 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 257 (304)
Q Consensus 178 ~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~ 257 (304)
+.+ ++||+++.+.+..+... ..+.+++|+|+++++++++.++.|++||..+++. ..+..|..+|.+++|+|+++
T Consensus 205 g~i--~~~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~ 278 (337)
T 1gxr_A 205 NTV--RSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGK 278 (337)
T ss_dssp SEE--EEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSS
T ss_pred CcE--EEEECCCCceEeeecCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCC
Confidence 996 68999988877666533 3578999999999999999999999999988764 46778999999999999999
Q ss_pred EEEEeecCCeeeeccccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 258 AFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 258 ~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
+|++++.|+.|++|+...+....... .+..-..+.++|+++.
T Consensus 279 ~l~~~~~dg~i~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~ 320 (337)
T 1gxr_A 279 WFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISVDDKY 320 (337)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSCE
T ss_pred EEEEecCCCcEEEEECCCCeEEEEec----CCCcEEEEEECCCCCE
Confidence 99999999999999987655332211 1222355677777654
No 51
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.3e-38 Score=280.39 Aligned_cols=262 Identities=16% Similarity=0.179 Sum_probs=212.2
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeecC---CcCcEEEEEEC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMG---HENRVSCLQVS 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~---h~~~V~~l~~s 77 (304)
.|++|++||+.+++....+....+...|.+++|+| ++.+|++|+.|++|++||+.+ ..+..+.. |...|.+++|+
T Consensus 94 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~ 172 (383)
T 3ei3_B 94 KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVS 172 (383)
T ss_dssp BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEE
T ss_pred CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEEC
Confidence 37899999999998877666555666799999999 679999999999999999986 44444443 45889999999
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCc----cccceec
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLK----CCRVNHL 152 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~----~~~~~~~ 152 (304)
|++++|++|+.|+.+ ++||+. .+.+..+..+. ..+.+++|+|+++ ++++++.|+.|++||+++ ...+..+
T Consensus 173 ~~~~~l~~~~~d~~i--~i~d~~-~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (383)
T 3ei3_B 173 VSRQMLATGDSTGRL--LLLGLD-GHEIFKEKLHK--AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM 247 (383)
T ss_dssp TTTTEEEEEETTSEE--EEEETT-SCEEEEEECSS--SCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE
T ss_pred CCCCEEEEECCCCCE--EEEECC-CCEEEEeccCC--CcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe
Confidence 999999999999995 789984 55666555443 3578999999999 999999999999999887 3344444
Q ss_pred cCcccceeEEEEcC-CCcEEEEeecCCceEEEEeeecCCceEEEeecCce-----e----------eeeeEEEEcCCCCE
Q psy4754 153 MGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI-----L----------FGATSVDFSVSGRL 216 (304)
Q Consensus 153 ~~h~~~v~~v~~sp-~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~-----~----------~~~~~~~~s~~g~~ 216 (304)
+|...|.+++|+| +++.|++++.|+.+ ++||+++.+....+..+.. . ..+..++|+|++++
T Consensus 248 -~~~~~v~~~~~s~~~~~~l~~~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~ 324 (383)
T 3ei3_B 248 -PHEKPVNAAYFNPTDSTKLLTTDQRNEI--RVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL 324 (383)
T ss_dssp -ECSSCEEEEEECTTTSCEEEEEESSSEE--EEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT
T ss_pred -cCCCceEEEEEcCCCCCEEEEEcCCCcE--EEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc
Confidence 7999999999999 99999999999996 6999988765444432210 0 12334666777766
Q ss_pred EEEEeCCCcEEEEeCCCceeeEEeec--cccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 217 LFAGYNDYTINVWDSLKCCRVNHLMG--HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+|+.|+.|++||+.+++.+..+.+ |...+.+++|+|++.+|++|+ |+.|++|++++
T Consensus 325 --s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 325 --LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp --CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred --ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 777899999999999999999987 567788889999999999997 99999999754
No 52
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.8e-37 Score=272.63 Aligned_cols=266 Identities=18% Similarity=0.187 Sum_probs=218.6
Q ss_pred CCceeEEeeccccc--eEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee--eecCCcCcEEEEEEC
Q psy4754 2 GKNHCRLFDLRADK--EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN--HLMGHENRVSCLQVS 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~--~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s 77 (304)
.|++|++||+.+++ ....+. .+...|.+++|+|++++|++|+.||.|++||+.+++... .+..|...|.+++|+
T Consensus 28 ~d~~v~i~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 105 (372)
T 1k8k_C 28 NNHEVHIYEKSGNKWVQVHELK--EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 105 (372)
T ss_dssp SSSEEEEEEEETTEEEEEEEEE--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC
T ss_pred CCCEEEEEeCCCCcEEeeeeec--CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEEC
Confidence 47899999999987 444443 445569999999999999999999999999998876443 346799999999999
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeE---eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCC----------
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEV---ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL---------- 144 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~---------- 144 (304)
|++++|++++.|+.+ ++||+...... .... ......+.++.|+|+++++++++.|+.|++||+.
T Consensus 106 ~~~~~l~~~~~d~~v--~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 106 PNEKKFAVGSGSRVI--SICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp TTSSEEEEEETTSSE--EEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred CCCCEEEEEeCCCEE--EEEEecCCCcceeeeeee-cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 999999999999996 68998766532 2221 1122357899999999999999999999999953
Q ss_pred --------ccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCE
Q psy4754 145 --------KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL 216 (304)
Q Consensus 145 --------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 216 (304)
+.+.+..+.+|...|.+++|+|+++.+++++.|+.+ ++||+++.+.+..+..+. ..+.+++|+|++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i--~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~ 258 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV--CLADADKKMAVATLASET--LPLLAVTFITESSL 258 (372)
T ss_dssp BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE--EEEEGGGTTEEEEEECSS--CCEEEEEEEETTEE
T ss_pred cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE--EEEECCCCceeEEEccCC--CCeEEEEEecCCCE
Confidence 456677778999999999999999999999999986 699999998888877654 35789999999999
Q ss_pred EEEEeCCCcEEEEeCCC--ce--------------------------------ee------EEe-eccccceEEEEEc-c
Q psy4754 217 LFAGYNDYTINVWDSLK--CC--------------------------------RV------NHL-MGHENRVSCLQVS-P 254 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~--~~--------------------------------~~------~~~-~~h~~~i~~l~~s-p 254 (304)
+++| .|+.|++|++.. +. .. ..+ .+|..+|++++|. +
T Consensus 259 l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 337 (372)
T 1k8k_C 259 VAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG 337 (372)
T ss_dssp EEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEES
T ss_pred EEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecC
Confidence 9888 899999999876 31 00 223 4899999999966 6
Q ss_pred CC---CEEEEeecCCeeeeccccccc
Q psy4754 255 DG---TAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 255 ~g---~~lasgs~D~~i~~~~~~~~~ 277 (304)
+| .+|+||+.|++|++|+++...
T Consensus 338 ~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 338 GKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp TTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred CCcceeeEEEecCCCceEEEEecChh
Confidence 77 999999999999999986543
No 53
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.8e-37 Score=267.60 Aligned_cols=245 Identities=18% Similarity=0.172 Sum_probs=203.9
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc----eeeeeecCCcCcEEEEEECC--CCCeEEEEeCCCceEEEEe
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC----CRVNHLMGHENRVSCLQVSP--DGTAFSSGSWDTTLRCRLF 97 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~----~~~~~~~~h~~~V~~l~~s~--d~~~l~sgs~D~~i~~~~w 97 (304)
.|...|++++|+|++++|++|+.||+|++||+.++ +....+.+|..+|.+++|+| ++++|++|+.|+++ ++|
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v--~vw 86 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV--KLW 86 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE--EEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE--EEE
Confidence 34456999999999999999999999999999866 45667789999999999999 69999999999995 789
Q ss_pred eeCCC---------eeEeEEeccceeeceeeeEEcCC--CCEEEEEeCCCeEEEecCCccccceecc-------------
Q psy4754 98 DLRAD---------KEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCCRVNHLM------------- 153 (304)
Q Consensus 98 d~~~~---------~~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~------------- 153 (304)
|+... +.+..+..+ ...+.++.|+|+ +.++++++.|+.|++||+++.+.+..+.
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDS--KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred ecCCCcccccccCcceeeeeccc--CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99875 334444333 235788999999 9999999999999999988766554332
Q ss_pred CcccceeEEEEcCC---CcEEEEeecCCceEEEEeeecCCce--EEEeecCceeeeeeEEEEcCCC----CEEEEEeCCC
Q psy4754 154 GHENRVSCLQVSPD---GTAFSSGSWDTTLRCRLFDLRADKE--VACYKKDSILFGATSVDFSVSG----RLLFAGYNDY 224 (304)
Q Consensus 154 ~h~~~v~~v~~sp~---~~~las~s~d~~i~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~~g----~~l~sg~~d~ 224 (304)
+|...+.+++|+|+ +..+++++.|+.+ .+|+....+. +..+..+ ...+.+++|+|++ ++|++|+.|+
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~h--~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAI--IYQRGKDGKLHVAAKLPGH--KSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEE--EEEECTTSCEEEEEECCCC--CSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcE--EEEccCCCceeeeeecCCC--CcceeEEEECCCCCCcceEEEEEcCCC
Confidence 68889999999997 8999999999986 3555555544 3333333 3468999999998 8999999999
Q ss_pred cEEEEeCCCc----------------------------------------------eeeEEeeccccceEEEEEccCCCE
Q psy4754 225 TINVWDSLKC----------------------------------------------CRVNHLMGHENRVSCLQVSPDGTA 258 (304)
Q Consensus 225 ~i~iwd~~~~----------------------------------------------~~~~~~~~h~~~i~~l~~sp~g~~ 258 (304)
.|++||+.++ +.+..+.+|...|++++|+|++++
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 9999998764 567778899999999999999999
Q ss_pred EEEeecCCeeeecccccc
Q psy4754 259 FSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 259 lasgs~D~~i~~~~~~~~ 276 (304)
|++|+.|+.|++|+...+
T Consensus 321 l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp EEEEETTSCEEEEEECTT
T ss_pred EEEecCCCcEEEEecCcC
Confidence 999999999999998754
No 54
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.1e-36 Score=260.77 Aligned_cols=289 Identities=21% Similarity=0.306 Sum_probs=220.1
Q ss_pred eEEeeccccceEeeeeccccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCc-----eeeeeecCCcCcEEEEEECCC
Q psy4754 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKC-----CRVNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~-----~~~~~~~~h~~~V~~l~~s~d 79 (304)
+.++...+.+......+..|...|++++|+|+ +++|+|||.||+|+|||+.+. .+.+.+.+|..+|.+++|+|+
T Consensus 18 ~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d 97 (340)
T 4aow_A 18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD 97 (340)
T ss_dssp --------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT
T ss_pred EEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC
Confidence 33444444332222223445556999999998 579999999999999998654 356678899999999999999
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc-ceeccCcccc
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR-VNHLMGHENR 158 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~ 158 (304)
+++|++|+.|+.+ ++|+............... ......+++++.++++++.|+.+++||...... .....+|...
T Consensus 98 g~~l~s~~~d~~i--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~ 173 (340)
T 4aow_A 98 GQFALSGSWDGTL--RLWDLTTGTTTRRFVGHTK--DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 173 (340)
T ss_dssp SSEEEEEETTSEE--EEEETTTTEEEEEEECCSS--CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSC
T ss_pred CCEEEEEcccccc--eEEeecccceeeeecCCCC--ceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCc
Confidence 9999999999995 6899987776655544322 345677899999999999999999999876543 3346789999
Q ss_pred eeEEEEcCCC--cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 159 VSCLQVSPDG--TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 159 v~~v~~sp~~--~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
+..++|++++ ..+++++.|+.+ ++||+++.+....+..+. ..+++++|+|++++|++|+.|++|++||+.+...
T Consensus 174 v~~~~~~~~~~~~~~~s~~~d~~i--~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~ 249 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGWDKLV--KVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249 (340)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred ccceEEccCCCCcEEEEEcCCCEE--EEEECCCCceeeEecCCC--CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce
Confidence 9999998865 578899999996 689999988877776554 4679999999999999999999999999999998
Q ss_pred eEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeecccc-----CCcee-EEEEEecCCccC
Q psy4754 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRIT-----KPTQG-LTVYFQDRGRSI 304 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~ 304 (304)
+..+..| ..|.++.|+|++.. ++++.|+.|++|+.+.+.....++.... .+... ..+.|+|+|+.|
T Consensus 250 ~~~~~~~-~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 321 (340)
T 4aow_A 250 LYTLDGG-DIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL 321 (340)
T ss_dssp EEEEECS-SCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEE
T ss_pred eeeecCC-ceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEE
Confidence 8888754 68999999998755 5666799999999876554433332211 12222 457888887653
No 55
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=275.81 Aligned_cols=266 Identities=20% Similarity=0.264 Sum_probs=218.9
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeec-------------CCc
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLM-------------GHE 68 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~-------------~h~ 68 (304)
+.++++|++..++....+. .|...|++++|+| ++++|++|+.||.|++||+.+++....+. +|.
T Consensus 22 ~~~~~v~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVER--IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHTEEECTTEEECC--CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred cCcceeeccccCcceeeee--ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 3468899998887655444 3556699999999 99999999999999999998876554442 599
Q ss_pred CcEEEEEECC-CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC---CCCEEEEEeCCCeEEEecCC
Q psy4754 69 NRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV---SGRLLFAGYNDYTINVWDSL 144 (304)
Q Consensus 69 ~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~sg~~dg~i~iwd~~ 144 (304)
..|.+++|+| ++++|++++.|+.+ ++||+...+....+.... .+..+.+++ ++.++++++.++.|++||+.
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i--~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTL--KVWDTNTLQTADVFNFEE---TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEE--EEEETTTTEEEEEEECSS---CEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeE--EEeeCCCCccceeccCCC---ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 9999999999 77899999999995 789999988877766433 345667776 45599999999999999999
Q ss_pred ccccceeccCcccceeEEEEcCCCc-EEEEeecCCceEEEEeeecCCc-eEEEeec-------------CceeeeeeEEE
Q psy4754 145 KCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADK-EVACYKK-------------DSILFGATSVD 209 (304)
Q Consensus 145 ~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~d~~i~i~~~d~~~~~-~~~~~~~-------------~~~~~~~~~~~ 209 (304)
+.+.+..+.+|...|.+++|+|+++ .+++++.|+.+ ++||++..+ .+..+.. ......+.+++
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i--~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRV--KLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCE--EEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcE--EEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 8888888999999999999999998 59999999996 689998765 2222211 11224578999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCc-----------------------------------------------eeeEEeec
Q psy4754 210 FSVSGRLLFAGYNDYTINVWDSLKC-----------------------------------------------CRVNHLMG 242 (304)
Q Consensus 210 ~s~~g~~l~sg~~d~~i~iwd~~~~-----------------------------------------------~~~~~~~~ 242 (304)
|+|++++|++++.|+.|++||+.++ +.+..+.+
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 332 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG 332 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC
T ss_pred EcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc
Confidence 9999999999999999999997543 45666788
Q ss_pred cccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 243 HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 243 h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
|.+.|++++|+|++.+|++|+.|+.|++|++....
T Consensus 333 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 333 HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 99999999999999999999999999999987654
No 56
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-38 Score=281.68 Aligned_cols=266 Identities=17% Similarity=0.175 Sum_probs=220.3
Q ss_pred CCceeEEeeccc----cceEeeeeccccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCce------ee---eeecCC
Q psy4754 2 GKNHCRLFDLRA----DKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCC------RV---NHLMGH 67 (304)
Q Consensus 2 ~~~~v~~wd~~~----~~~~~~~~~~~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~------~~---~~~~~h 67 (304)
.|++|++||+.+ .+.... ...+...|++++|+|+ +.+|++|+.||+|++||+.+++ .. ..+.+|
T Consensus 87 ~dg~v~vw~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAINSMAR--FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp SSSCEEEECCSSTTSCCCEEEE--CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred cCCeEEEeecccccccccchhh--ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence 378999999998 234333 2344556999999998 8999999999999999998776 22 234679
Q ss_pred cCcEEEEEECCC-CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccce----eeceeeeEEcCCC-CEEEEEeCCC---eE
Q psy4754 68 ENRVSCLQVSPD-GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI----LFGATSVDFSVSG-RLLFAGYNDY---TI 138 (304)
Q Consensus 68 ~~~V~~l~~s~d-~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~----~~~~~~~~~s~~~-~~l~sg~~dg---~i 138 (304)
...|.+++|+|+ +++|++++.|+.+ ++||+...+.+..+..+.. ...+.+++|+|++ .++++++.|+ .|
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~v--~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSSNFA--SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSSSCE--EEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred CCCeeEEEeCCCCCcEEEEEcCCCCE--EEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 999999999999 7899999999995 7899999888777655321 2357899999997 6899999998 99
Q ss_pred EEecCCcc-ccceecc-CcccceeEEEEcC-CCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCC-
Q psy4754 139 NVWDSLKC-CRVNHLM-GHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG- 214 (304)
Q Consensus 139 ~iwd~~~~-~~~~~~~-~h~~~v~~v~~sp-~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g- 214 (304)
++||+++. ..+..+. +|...|.+++|+| +++++++++.|+++ ++||+++.+.+..+..+. ..+.+++|+|++
T Consensus 243 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v--~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~~~ 318 (416)
T 2pm9_A 243 LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTV--LLWNPESAEQLSQFPARG--NWCFKTKFAPEAP 318 (416)
T ss_dssp CEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEE--EEECSSSCCEEEEEECSS--SCCCCEEECTTCT
T ss_pred EEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCE--EEeeCCCCccceeecCCC--CceEEEEECCCCC
Confidence 99999885 5666777 8999999999999 89999999999996 699999988888776654 357899999999
Q ss_pred CEEEEEeCCCcEEEEeCCCceeeEEee-----------------------------------ccccceEEEEEccCCCEE
Q psy4754 215 RLLFAGYNDYTINVWDSLKCCRVNHLM-----------------------------------GHENRVSCLQVSPDGTAF 259 (304)
Q Consensus 215 ~~l~sg~~d~~i~iwd~~~~~~~~~~~-----------------------------------~h~~~i~~l~~sp~g~~l 259 (304)
.+|++++.|+.|++||+.+........ .|..++.+++|+|+|++|
T Consensus 319 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 398 (416)
T 2pm9_A 319 DLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLV 398 (416)
T ss_dssp TEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEE
T ss_pred CEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEE
Confidence 899999999999999987654322211 167788899999999999
Q ss_pred EEeecCCeeeeccccc
Q psy4754 260 SSGSWDTTLRDEESKN 275 (304)
Q Consensus 260 asgs~D~~i~~~~~~~ 275 (304)
++|+.|++|++|++..
T Consensus 399 a~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 399 QITPDGKGVSITNPKI 414 (416)
T ss_dssp CBCTTSSCBCCBCCCC
T ss_pred EEeCCCCeEEEEEecc
Confidence 9999999999998764
No 57
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-38 Score=280.44 Aligned_cols=237 Identities=14% Similarity=0.111 Sum_probs=193.6
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc--eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe-
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK- 103 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~--~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~- 103 (304)
..|++++|+|++++|++|+.|+.|++||+.++ +.+..+.+|..+|.+++|+|++++|++++.|+++ ++||+....
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v--~vwd~~~~~~ 89 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNA--YVYEKRPDGT 89 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSE--EEC------C
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeE--EEEEcCCCCc
Confidence 45999999999999999999999999999988 7788899999999999999999999999999995 789998765
Q ss_pred --eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc---ceeccC-cccceeEEEEcCCCcEEEEeecC
Q psy4754 104 --EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR---VNHLMG-HENRVSCLQVSPDGTAFSSGSWD 177 (304)
Q Consensus 104 --~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~-h~~~v~~v~~sp~~~~las~s~d 177 (304)
....+..+ ...+.++.|+|+++++++++.|+.|++||+.+.+. ...+.+ |...|.+++|+|+++.+++++.|
T Consensus 90 ~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 90 WKQTLVLLRL--NRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp CCCEEECCCC--SSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred eeeeeEeccc--CCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 33333222 33578999999999999999999999999987763 566777 99999999999999999999999
Q ss_pred CceEEEEeeecC------------------CceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee---
Q psy4754 178 TTLRCRLFDLRA------------------DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--- 236 (304)
Q Consensus 178 ~~i~i~~~d~~~------------------~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~--- 236 (304)
+++ ++||++. .+.+..+ .+...+.+++|+|++++|++++.|++|++||+.+++.
T Consensus 168 ~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 168 RKA--YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp SCE--EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred CEE--EEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 996 6899852 2233333 2224579999999999999999999999999988877
Q ss_pred -eEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 237 -VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 237 -~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
+..+.+|..+|.+++|+|++++|++|+.|+.+..|.
T Consensus 243 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 279 (377)
T 3dwl_C 243 ALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQG 279 (377)
T ss_dssp ECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECC
T ss_pred eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEe
Confidence 788899999999999999999999998777774443
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.2e-37 Score=276.90 Aligned_cols=266 Identities=17% Similarity=0.198 Sum_probs=218.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++....+ ..+...|++++|+|++++|++|+.||+|++||+.+++.+..+.+|..+|.+++|+|+++
T Consensus 117 ~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 194 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQREID--QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR 194 (420)
T ss_dssp TTSCEEEECTTSCEEEEET--TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT
T ss_pred CCCCEEEEeCCCcceeeec--ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC
Confidence 4688999999988775443 34455699999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccce----------------------eeceeeeEEcCCCCEEEEEeCCCeEE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSI----------------------LFGATSVDFSVSGRLLFAGYNDYTIN 139 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~----------------------~~~~~~~~~s~~~~~l~sg~~dg~i~ 139 (304)
+|++++.|+++ ++||+.+.+.+..+..+.. ...+.++.|+|+++++++|+.||.|+
T Consensus 195 ~l~s~~~d~~v--~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 272 (420)
T 3vl1_A 195 NVLSASLDGTI--RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVIT 272 (420)
T ss_dssp EEEEEETTSCE--EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEE
T ss_pred EEEEEcCCCcE--EEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEE
Confidence 99999999995 7899998888777653210 12245567889999999999999999
Q ss_pred EecCCccccceec-cCcccceeEEEEcCCCc-EEEEeecCCceEEEEeeecCCce-EEEeecCceeeeeeEEEEcCCCCE
Q psy4754 140 VWDSLKCCRVNHL-MGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSVSGRL 216 (304)
Q Consensus 140 iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~-~las~s~d~~i~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~ 216 (304)
+||+++.+.+..+ ..|...|.+++|+|+++ ++++++.|+.+ ++||+++.+. +..+..+. ...+.++ +.|++++
T Consensus 273 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i--~vwd~~~~~~~~~~~~~~~-~~~v~~~-~~~~~~~ 348 (420)
T 3vl1_A 273 VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML--AQWDLRSPECPVGEFLINE-GTPINNV-YFAAGAL 348 (420)
T ss_dssp EEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEE--EEEETTCTTSCSEEEEEST-TSCEEEE-EEETTEE
T ss_pred EEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeE--EEEEcCCCcCchhhhhccC-CCCceEE-EeCCCCE
Confidence 9999887766655 45889999999999998 99999999996 6999988654 44444322 1245566 5568899
Q ss_pred EEEEeCCCcEEEEeCCCc---------eeeEEeeccccceEEEEEccCCC---EEEEeecCCeeeeccccc
Q psy4754 217 LFAGYNDYTINVWDSLKC---------CRVNHLMGHENRVSCLQVSPDGT---AFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~~---------~~~~~~~~h~~~i~~l~~sp~g~---~lasgs~D~~i~~~~~~~ 275 (304)
|++++.|+.|++|++... .....+.+|...|.+++|+|++. .+++.+.++.+++|+..+
T Consensus 349 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 349 FVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 999999999999997652 22334667899999999999999 677777889999998754
No 59
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.9e-38 Score=281.90 Aligned_cols=268 Identities=15% Similarity=0.123 Sum_probs=206.3
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeec--CCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~ 78 (304)
.|++|+|||+.+++.........|...|++++|+| ++.+|+||+.||+|++||+.++....... .+..++.+++|+|
T Consensus 140 ~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (435)
T 4e54_B 140 KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA 219 (435)
T ss_dssp TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET
T ss_pred CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC
Confidence 37899999999887655555555666699999998 68899999999999999997654332222 3445788999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCccccce---eccC
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVN---HLMG 154 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~---~~~~ 154 (304)
++++|++|+.|++| ++||+.. +.+..+..+ ...+.+++|+|++. ++++|+.|+.|++||+++..... ...+
T Consensus 220 ~~~~l~~g~~dg~i--~~wd~~~-~~~~~~~~h--~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~ 294 (435)
T 4e54_B 220 SSRMVVTGDNVGNV--ILLNMDG-KELWNLRMH--KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP 294 (435)
T ss_dssp TTTEEEEECSSSBE--EEEESSS-CBCCCSBCC--SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCB
T ss_pred CCCEEEEEeCCCcE--eeeccCc-ceeEEEecc--cceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeee
Confidence 99999999999995 7899864 344333332 23578999999876 68889999999999988765433 3467
Q ss_pred cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCcee----eeeeEEEEcCCCCEEEEEe---------
Q psy4754 155 HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL----FGATSVDFSVSGRLLFAGY--------- 221 (304)
Q Consensus 155 h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~l~sg~--------- 221 (304)
|...|.+++|+|++++|++++.|++| ++||+++.+....+..+... ..+....|+|++.+++++.
T Consensus 295 h~~~v~~~~~spdg~~l~s~~~D~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 372 (435)
T 4e54_B 295 HRHPVNAACFSPDGARLLTTDQKSEI--RVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSC 372 (435)
T ss_dssp CSSCEEECCBCTTSSEEEEEESSSCE--EEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCS
T ss_pred ccccccceeECCCCCeeEEEcCCCEE--EEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEE
Confidence 99999999999999999999999996 68999887765544322110 1123456777777766654
Q ss_pred ---CCCcEEEEeCCCceeeEEee-ccccceEEE-EEccCCCEEEEeecCCeeeeccccccc
Q psy4754 222 ---NDYTINVWDSLKCCRVNHLM-GHENRVSCL-QVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 222 ---~d~~i~iwd~~~~~~~~~~~-~h~~~i~~l-~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
.++.|++||..+++.+..+. +|...|.++ +|+|+|.+||+|+ |++|++|++.++.
T Consensus 373 ~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 373 TPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp STTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 34679999999998888765 588889988 6999999999987 8899999987654
No 60
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-38 Score=278.13 Aligned_cols=263 Identities=16% Similarity=0.165 Sum_probs=197.8
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce---eeeeecCCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---RVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~---~~~~~~~h~~~V~~l~~s~ 78 (304)
.|++|++||+.++..........+...|.+++|+|++++|++|+.||+|++||+.+++ ....+.+|...|.+++|+|
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 110 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP 110 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT
T ss_pred CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC
Confidence 4789999999988322222233455569999999999999999999999999998876 5666788999999999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCee---EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCC-----------
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKE---VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL----------- 144 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~----------- 144 (304)
++++|++|+.|+++ ++||+...+. ...+... +...+.+++|+|+++++++++.|+.|++||+.
T Consensus 111 ~~~~l~~~~~d~~i--~iwd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 187 (377)
T 3dwl_C 111 NEDKFAVGSGARVI--SVCYFEQENDWWVSKHLKRP-LRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS 187 (377)
T ss_dssp TSSCCEEEESSSCE--EECCC-----CCCCEEECSS-CCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSC
T ss_pred CCCEEEEEecCCeE--EEEEECCcccceeeeEeecc-cCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccc
Confidence 99999999999995 7899987653 3444330 22357899999999999999999999999974
Q ss_pred -------ccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce----EEEeecCceeeeeeEEEEcCC
Q psy4754 145 -------KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE----VACYKKDSILFGATSVDFSVS 213 (304)
Q Consensus 145 -------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~s~~ 213 (304)
..+.+..+ +|...|.+++|+|+++++++++.|++| ++||+++.+. +..+..+. ..+.+++|+|+
T Consensus 188 ~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~ 262 (377)
T 3dwl_C 188 VWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSV--TIAYPSAPEQPPRALITVKLSQ--LPLRSLLWANE 262 (377)
T ss_dssp SSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEE--C-CEECSTTSCEEECCCEECSS--SCEEEEEEEET
T ss_pred ccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcE--EEEECCCCCCcceeeEeecCCC--CceEEEEEcCC
Confidence 24445556 899999999999999999999999996 6999998876 44554443 35789999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCce-e--------------------------e---------EEe----------------e
Q psy4754 214 GRLLFAGYNDYTINVWDSLKCC-R--------------------------V---------NHL----------------M 241 (304)
Q Consensus 214 g~~l~sg~~d~~i~iwd~~~~~-~--------------------------~---------~~~----------------~ 241 (304)
+++|++|+.++.+ +|+..... . . ..+ .
T Consensus 263 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 341 (377)
T 3dwl_C 263 SAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPT 341 (377)
T ss_dssp TEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSS
T ss_pred CCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCc
Confidence 9999999876666 66543111 0 0 001 1
Q ss_pred ccccceEEEEEccCC-C---EEEEeecCCeeeeccc
Q psy4754 242 GHENRVSCLQVSPDG-T---AFSSGSWDTTLRDEES 273 (304)
Q Consensus 242 ~h~~~i~~l~~sp~g-~---~lasgs~D~~i~~~~~ 273 (304)
.|.+.|+++++.+.. . .|+||+.|++|++|++
T Consensus 342 ~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 342 VHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 299999999976643 3 6999999999999984
No 61
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8e-37 Score=268.47 Aligned_cols=244 Identities=14% Similarity=0.095 Sum_probs=210.2
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce--eeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
+...|++++|+|++++|++|+.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.|+.+ ++||+...
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i--~vwd~~~~ 84 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA--YVWTLKGR 84 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCE--EEEEEETT
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeE--EEEECCCC
Confidence 34569999999999999999999999999998887 788889999999999999999999999999995 78999877
Q ss_pred eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc---c-eeccCcccceeEEEEcCCCcEEEEeecCC
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR---V-NHLMGHENRVSCLQVSPDGTAFSSGSWDT 178 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~---~-~~~~~h~~~v~~v~~sp~~~~las~s~d~ 178 (304)
+.............+.++.|+|+++++++++.|+.|++||+..... . .....|...|.+++|+|+++.+++++.|+
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 6544443222333578999999999999999999999999876552 2 22367899999999999999999999999
Q ss_pred ceEEEEeeec------------------CCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 179 TLRCRLFDLR------------------ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 179 ~i~i~~~d~~------------------~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
.+ ++||++ ..+.+..+..+. ..+.+++|+|++++|++++.|+.|++||+.+++.+..+
T Consensus 165 ~i--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 165 KC--RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC--GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp CE--EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS--SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred CE--EEEEcccccccccccccccccccchhhheEecCCCC--CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 96 689953 455566555433 35789999999999999999999999999999999999
Q ss_pred eccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 241 MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 241 ~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
..|..+|.+++|+|++.+|++| .|+.|++|+...
T Consensus 241 ~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 241 ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999999999999999999888 899999999876
No 62
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-36 Score=256.86 Aligned_cols=257 Identities=19% Similarity=0.224 Sum_probs=215.9
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc---eeeeeecCCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC---CRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~---~~~~~~~~h~~~V~~l~~s~ 78 (304)
.|++|++||+.+++....+.. +...|.+++|+|++.+|++|+.||.|++|++... +.+..+.+|...|.+++|
T Consensus 37 ~dg~v~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-- 112 (313)
T 3odt_A 37 RDGTVRLWSKDDQWLGTVVYT--GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF-- 112 (313)
T ss_dssp TTSEEEEEEESSSEEEEEEEE--CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--
T ss_pred cCCcEEEEECCCCEEEEEeec--CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--
Confidence 478999999998877655443 3456999999999999999999999999998654 556778899999999999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceeccC-cc
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMG-HE 156 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-h~ 156 (304)
++++|++++.|+.+ ++|| ..+....+..+. ..+.++.+.+ +++++++++.|+.|++||.. .....+.. |.
T Consensus 113 ~~~~l~~~~~d~~i--~~~d--~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~ 184 (313)
T 3odt_A 113 QDGVVISGSWDKTA--KVWK--EGSLVYNLQAHN--ASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHN 184 (313)
T ss_dssp ETTEEEEEETTSEE--EEEE--TTEEEEEEECCS--SCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCS
T ss_pred cCCEEEEEeCCCCE--EEEc--CCcEEEecccCC--CceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCc
Confidence 57899999999995 6899 445555554432 2456788877 89999999999999999943 44555555 89
Q ss_pred cceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
..|.+++|+|++. +++++.|+.+ ++||+++.+.+..+..+. ..+.+++|+|++ .|++++.|+.|++||+.+++.
T Consensus 185 ~~i~~~~~~~~~~-~~~~~~dg~i--~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~ 258 (313)
T 3odt_A 185 DVVRHLAVVDDGH-FISCSNDGLI--KLVDMHTGDVLRTYEGHE--SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL 258 (313)
T ss_dssp SCEEEEEEEETTE-EEEEETTSEE--EEEETTTCCEEEEEECCS--SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE
T ss_pred ccEEEEEEcCCCe-EEEccCCCeE--EEEECCchhhhhhhhcCC--ceEEEEEEecCC-CEEEEecCCEEEEEECCCCce
Confidence 9999999999998 9999999985 699999988888776554 467999999999 588999999999999999999
Q ss_pred eEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+..+..|..+|.+++|+|+++ +++++.|+.|++|+...+.
T Consensus 259 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 259 KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred eEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 999999999999999999998 6679999999999987654
No 63
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=267.44 Aligned_cols=244 Identities=16% Similarity=0.160 Sum_probs=204.1
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCC--CceeeeeecCCcCcEEEEEECCC--CCeEEEEeCCCceEEEEeee
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSL--KCCRVNHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~--~~~~~~~~~~h~~~V~~l~~s~d--~~~l~sgs~D~~i~~~~wd~ 99 (304)
.|...|++++|+|++++|++|+.||.|++||+. +++.+..+.+|..+|.+++|+++ +++|++|+.|++| ++||+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v--~iwd~ 86 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV--LIWKE 86 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE--EEEEE
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE--EEEEc
Confidence 344569999999999999999999999999997 66777888999999999999987 8999999999995 78999
Q ss_pred CCCe--eEeEEeccceeeceeeeEEcCC--CCEEEEEeCCCeEEEecCCccc--cceeccCcccceeEEEEcC-------
Q psy4754 100 RADK--EVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSP------- 166 (304)
Q Consensus 100 ~~~~--~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp------- 166 (304)
...+ .+..+..+ ...+.++.|+|+ +.++++++.|+.|++||+.+.. ....+.+|...|.+++|+|
T Consensus 87 ~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 87 ENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp ETTEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred CCCceeEeeeecCC--CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence 8876 44433332 235789999999 9999999999999999998763 3335678999999999999
Q ss_pred ------CCcEEEEeecCCceEEEEeeecCCceE----EEeecCceeeeeeEEEEcCC---CCEEEEEeCCCcEEEEeCCC
Q psy4754 167 ------DGTAFSSGSWDTTLRCRLFDLRADKEV----ACYKKDSILFGATSVDFSVS---GRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 167 ------~~~~las~s~d~~i~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~s~~---g~~l~sg~~d~~i~iwd~~~ 233 (304)
++..+++++.|+.+ ++||++..+.. ..+..+. ..+.+++|+|+ +++|++++.|+.|++||+.+
T Consensus 165 ~~~~~~~~~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 165 EHNGTKESRKFVTGGADNLV--KIWKYNSDAQTYVLESTLEGHS--DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp -----CTTCEEEEEETTSCE--EEEEEETTTTEEEEEEEECCCS--SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCEEEEEeCCCeE--EEEEecCCCcceeeEEEEeccc--CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 69999999999996 68999876532 2333332 46789999999 89999999999999999887
Q ss_pred ce-----eeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 234 CC-----RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 234 ~~-----~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+. .+.....|...|++++|+|+|++|++++.|+.|++|+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 53 2222344889999999999999999999999999999874
No 64
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.3e-37 Score=270.10 Aligned_cols=267 Identities=16% Similarity=0.166 Sum_probs=211.7
Q ss_pred ccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeeeec--CCcCcEEEEEECC-CCCeEEEEeCCCceEEEEeee
Q psy4754 24 SILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~ 99 (304)
.+...|++++|+|++ ++|++|+.||+|++||+.+++....+. +|...|.+++|+| ++++|++++.|+++ ++||+
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i--~iwd~ 148 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT--TLRDF 148 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE--EEEET
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE--EEEEC
Confidence 344569999999999 899999999999999999877666554 6999999999999 78999999999995 78999
Q ss_pred CCCeeEeEEeccc-eeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCc-EEEEeecC
Q psy4754 100 RADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWD 177 (304)
Q Consensus 100 ~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~d 177 (304)
.. ..+..+.... ....+.+++|+|+++++++|+.|+.|++||+ +.+.+..+.+|...|.+++|+|+++ .+++++.|
T Consensus 149 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 149 SG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp TS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred CC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 86 4444443321 1234789999999999999999999999998 4667778889999999999999998 99999999
Q ss_pred CceEEEEeeecC----CceEEEeecCceeeeeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCceeeEEeeccc--------
Q psy4754 178 TTLRCRLFDLRA----DKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-------- 244 (304)
Q Consensus 178 ~~i~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-------- 244 (304)
+++ ++||+++ ...+..+.. ...+.+++|+| ++++|++++.|+.|++||+.++..+..+.+|.
T Consensus 227 ~~i--~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (383)
T 3ei3_B 227 ATV--KLWDLRNIKDKNSYIAEMPH---EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT 301 (383)
T ss_dssp SEE--EEEEGGGCCSTTCEEEEEEC---SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred CEE--EEEeCCCCCcccceEEEecC---CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence 996 6899987 445544432 24679999999 99999999999999999998887777776553
Q ss_pred ---------cceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCceeE-EEEEecCCcc
Q psy4754 245 ---------NRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGL-TVYFQDRGRS 303 (304)
Q Consensus 245 ---------~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 303 (304)
+.+.+++|+|+|++ +|+.|++|++|+...+.....++... ....+ .+.|+|+++.
T Consensus 302 ~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~--~~~~~~~~~~s~~g~~ 366 (383)
T 3ei3_B 302 PIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN--AAGIISLNKFSPTGDV 366 (383)
T ss_dssp CCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT--BCSCCCEEEECTTSSE
T ss_pred ceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCC--CCceEEEEEEecCccE
Confidence 34556788888877 88899999999987665433333211 11222 3477777764
No 65
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-38 Score=289.50 Aligned_cols=229 Identities=13% Similarity=0.033 Sum_probs=181.7
Q ss_pred EEEeeCCCcEEEEeCCCceee----eeecCCcCcEEEEEECCC------CCeEEEEeCCCceEEEEeeeCCCeeE-----
Q psy4754 41 LFAGYNDYTINVWDSLKCCRV----NHLMGHENRVSCLQVSPD------GTAFSSGSWDTTLRCRLFDLRADKEV----- 105 (304)
Q Consensus 41 l~tg~~dg~v~iwd~~~~~~~----~~~~~h~~~V~~l~~s~d------~~~l~sgs~D~~i~~~~wd~~~~~~~----- 105 (304)
+++++.|++|+|||+.+++.. ..+.+|.+.|.+++|+|+ +.+|+|++.|++| ++||+......
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtv--rlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTI--NFLEIIDNATDVHVFK 253 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCE--EEEECCCCSSSSSEEE
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeE--EEEEcCCCccccccce
Confidence 444668899999998776532 345678899999999997 5799999999995 78999754311
Q ss_pred ------eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc-cceeccCcccceeEE--EEcCCC-cEEEEee
Q psy4754 106 ------ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHLMGHENRVSCL--QVSPDG-TAFSSGS 175 (304)
Q Consensus 106 ------~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v--~~sp~~-~~las~s 175 (304)
..+..+. ..+.+++|+++ ..|++|+.||+|++||+.+.. +...+.+|..+|.+| +|+|++ ++|||||
T Consensus 254 ~~~~p~~~l~~h~--~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S 330 (524)
T 2j04_B 254 MCEKPSLTLSLAD--SLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA 330 (524)
T ss_dssp CCCSCSEEECCTT--TCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE
T ss_pred eecCceEEEEcCC--CCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec
Confidence 1222221 24688999986 489999999999999998753 445678999999999 578887 8999999
Q ss_pred cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccC
Q psy4754 176 WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 255 (304)
Q Consensus 176 ~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~ 255 (304)
.|+++ ++||+++.+....+..+.....+.+++|+|+++.+++++.|++|++||+.++..+.++.+|.+.|++|+|+|+
T Consensus 331 ~D~tv--klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~ 408 (524)
T 2j04_B 331 VDGYF--YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL 408 (524)
T ss_dssp TTSEE--EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS
T ss_pred cCCeE--EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC
Confidence 99996 6999998776544433221123578999999999999999999999999998888889999999999999999
Q ss_pred CCEEEEeecCCeeeecccccc
Q psy4754 256 GTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 256 g~~lasgs~D~~i~~~~~~~~ 276 (304)
|+.|+|||.|++|++|+...+
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp CCBCEEEETTTEEECCBSCSS
T ss_pred CCeEEEEECCCEEEEEechHh
Confidence 999999999999999997654
No 66
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2e-37 Score=276.41 Aligned_cols=269 Identities=17% Similarity=0.176 Sum_probs=216.0
Q ss_pred CCceeEEeeccccceEee-e-eccccccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCCc-------eeeeeecCCcCcE
Q psy4754 2 GKNHCRLFDLRADKEVAC-Y-KKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKC-------CRVNHLMGHENRV 71 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~-~-~~~~~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~-------~~~~~~~~h~~~V 71 (304)
+|++|+|||+........ . ....|...|++++|+| ++.+|++|+.||+|++||+.++ +.+..+.+|...|
T Consensus 55 ~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v 134 (402)
T 2aq5_A 55 GGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV 134 (402)
T ss_dssp SSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCE
T ss_pred CCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeE
Confidence 578999999976533211 1 1223445599999999 8999999999999999999887 5677888999999
Q ss_pred EEEEECCCC-CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce
Q psy4754 72 SCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 150 (304)
Q Consensus 72 ~~l~~s~d~-~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~ 150 (304)
.+++|+|++ ++|++|+.|+++ ++||+.+.+.+..+....+...+.+++|+|++.++++++.|+.|++||+++.+.+.
T Consensus 135 ~~~~~~p~~~~~l~s~~~dg~i--~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 135 GIVAWHPTAQNVLLSAGCDNVI--LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA 212 (402)
T ss_dssp EEEEECSSBTTEEEEEETTSCE--EEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEECcCCCCEEEEEcCCCEE--EEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee
Confidence 999999998 699999999995 78999998888777312223357899999999999999999999999999988888
Q ss_pred ec-cCcccc-eeEEEEcCCCcEEEEe---ecCCceEEEEeeecCCce-EEEeecCceeeeeeEEEEcCCCCEEEE-EeCC
Q psy4754 151 HL-MGHENR-VSCLQVSPDGTAFSSG---SWDTTLRCRLFDLRADKE-VACYKKDSILFGATSVDFSVSGRLLFA-GYND 223 (304)
Q Consensus 151 ~~-~~h~~~-v~~v~~sp~~~~las~---s~d~~i~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~s-g~~d 223 (304)
.+ .+|... +.++.|+|+++++++| +.|+.+ ++||+++.+. +..... .....+.+++|+|++++|++ |+.|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i--~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQV--ALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEE--EEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTC
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceE--EEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCC
Confidence 77 788876 8999999999999998 688885 6999987654 222221 11235789999999999865 5579
Q ss_pred CcEEEEeCCCcee-eEEeec--cccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 224 YTINVWDSLKCCR-VNHLMG--HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 224 ~~i~iwd~~~~~~-~~~~~~--h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+.|++||+.++++ +..+.. |..+|.+++|+|++.++++ .|+.+++|++..+.
T Consensus 290 g~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 290 SSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp SCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred CeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 9999999988763 444444 5699999999999998875 46799999886643
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=279.99 Aligned_cols=266 Identities=11% Similarity=0.124 Sum_probs=213.0
Q ss_pred CCceeEEeeccc---cceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCC---CceeeeeecC---------
Q psy4754 2 GKNHCRLFDLRA---DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL---KCCRVNHLMG--------- 66 (304)
Q Consensus 2 ~~~~v~~wd~~~---~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~---~~~~~~~~~~--------- 66 (304)
.|++|++||+.+ +..........+...|++++|+|++.+|++|+.||+|++||+. +++.++.+.+
T Consensus 84 ~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~ 163 (437)
T 3gre_A 84 DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLK 163 (437)
T ss_dssp TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGG
T ss_pred CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEcc
Confidence 478999999988 4311101111244569999999999999999999999999984 4433332221
Q ss_pred ---CcCcEEEEE--ECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEe
Q psy4754 67 ---HENRVSCLQ--VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 141 (304)
Q Consensus 67 ---h~~~V~~l~--~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iw 141 (304)
+...+.++. +++++++|++|+.|++| ++||+.+.+.+..+....+...+.+++|+|++.++++|+.||.|++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i--~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 241 (437)
T 3gre_A 164 NFGKNEYAVRMRAFVNEEKSLLVALTNLSRV--IIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIW 241 (437)
T ss_dssp GGSSCCCEEEEEEEECSSCEEEEEEETTSEE--EEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CcccccCceEEEEEEcCCCCEEEEEeCCCeE--EEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 456677776 66889999999999995 79999998888877753223367899999999999999999999999
Q ss_pred cCCccccceecc-CcccceeEEEEc----CCCcEEEEeecCCceEEEEeeecCCceEEEeecCc----------------
Q psy4754 142 DSLKCCRVNHLM-GHENRVSCLQVS----PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS---------------- 200 (304)
Q Consensus 142 d~~~~~~~~~~~-~h~~~v~~v~~s----p~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~---------------- 200 (304)
|+++.+.+.++. .|..+|.+++++ |+++.+++++.|+.| ++||+++++.+..+..+.
T Consensus 242 d~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (437)
T 3gre_A 242 DIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL--TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLE 319 (437)
T ss_dssp ETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE--EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGG
T ss_pred EcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcE--EEEEcCCCcEEEEEEcCCCCCccceecccccccc
Confidence 999888877765 788899999655 568899999999985 699999888777665332
Q ss_pred --------eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec------------------------------
Q psy4754 201 --------ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG------------------------------ 242 (304)
Q Consensus 201 --------~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~------------------------------ 242 (304)
....+.+++|+ ++++|++|+.|+.|++||+.+++.+..+.+
T Consensus 320 ~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (437)
T 3gre_A 320 ELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTH 398 (437)
T ss_dssp GCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-----
T ss_pred cceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccccccc
Confidence 22347788999 779999999999999999998887777765
Q ss_pred -------cccceEEEEEccC--CCEEEEeecCCeeeecc
Q psy4754 243 -------HENRVSCLQVSPD--GTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 243 -------h~~~i~~l~~sp~--g~~lasgs~D~~i~~~~ 272 (304)
|...|++++|+++ +.+|+||+.|+.|++|+
T Consensus 399 ~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 399 SVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 78999999999999994
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=259.70 Aligned_cols=270 Identities=19% Similarity=0.203 Sum_probs=224.3
Q ss_pred eeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeee
Q psy4754 20 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 20 ~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~ 99 (304)
.....|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+++ ++||+
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i--~iwd~ 103 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSI--KLWDV 103 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEE--EEEET
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeE--EEEEC
Confidence 3344555669999999999999999999999999999999999999999999999999999999999999995 78999
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC-----CeEEEecCCccc-----------cceeccCccc--ceeE
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC-----------RVNHLMGHEN--RVSC 161 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~-----------~~~~~~~h~~--~v~~ 161 (304)
.+.+.+..+... ..+.++.|+|++.++++++.+ +.|++||+.+.. .+..+..|.. .+.+
T Consensus 104 ~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 104 SNGQCVATWKSP---VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TTCCEEEEEECS---SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCCcEEEEeecC---CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 988888777633 246789999999999999999 999999976543 2334455665 8999
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecC-CceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRA-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
++|+|+++.+++++.|+.+ ++||+++ .+.+..+..+. ..+.+++|+|++++|++++.|+.|++||+.++..+..+
T Consensus 181 ~~~~~~~~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 256 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKI--SKYDVSNNYEYVDSIDLHE--KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY 256 (369)
T ss_dssp EEECGGGCEEEEEETTSEE--EEEETTTTTEEEEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEcCCCCEEEEEcCCCEE--EEEECCCCcEeEEEEecCC--CceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence 9999999999999999986 6999988 56666665543 35789999999999999999999999999998888877
Q ss_pred eccccceEEEEEccCCCEEEEeecCC--------------eeeeccccccchhheeeccccCCcee-EEEEEecCCcc
Q psy4754 241 MGHENRVSCLQVSPDGTAFSSGSWDT--------------TLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGRS 303 (304)
Q Consensus 241 ~~h~~~i~~l~~sp~g~~lasgs~D~--------------~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 303 (304)
. +..++.+++|+|+++++++++.|+ .+++|+...+.....+. .+... ..+.++|+++.
T Consensus 257 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~s~~~~~ 329 (369)
T 3zwl_B 257 E-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ----GHFGPLNTVAISPQGTS 329 (369)
T ss_dssp E-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE----CCSSCEEEEEECTTSSE
T ss_pred c-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee----cccCcEEEEEECCCCCE
Confidence 6 788999999999999999999988 78899876654333222 22232 34677777654
No 69
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.7e-37 Score=275.01 Aligned_cols=246 Identities=18% Similarity=0.261 Sum_probs=199.9
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce-----------eeeeecCCc------------CcEEEEEECCCC--
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-----------RVNHLMGHE------------NRVSCLQVSPDG-- 80 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~-----------~~~~~~~h~------------~~V~~l~~s~d~-- 80 (304)
...|++++|+|+|++||+|+.||.|++||+.+++ ....+.+|. +.|.+++|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 3459999999999999999999999999998766 477788998 889999999998
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEe---------------------------------------EEeccceeeceeeeE
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVA---------------------------------------CYKKDSILFGATSVD 121 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 121 (304)
.+|++++.|++| ++||+....... .+ ...+...+.+++
T Consensus 108 ~~l~s~s~d~~i--~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~ 184 (447)
T 3dw8_B 108 AQFLLSTNDKTI--KLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF-ANAHTYHINSIS 184 (447)
T ss_dssp SEEEEEECSSCE--EEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE-CSCCSSCCCEEE
T ss_pred ceEEEeCCCCeE--EEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe-ccCCCcceEEEE
Confidence 799999999996 689987543311 11 111223477899
Q ss_pred EcCCCCEEEEEeCCCeEEEecCCc-cccce-------eccCcccceeEEEEcCCC-cEEEEeecCCceEEEEeeecCCce
Q psy4754 122 FSVSGRLLFAGYNDYTINVWDSLK-CCRVN-------HLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKE 192 (304)
Q Consensus 122 ~s~~~~~l~sg~~dg~i~iwd~~~-~~~~~-------~~~~h~~~v~~v~~sp~~-~~las~s~d~~i~i~~~d~~~~~~ 192 (304)
|+|+++++++| .|+.|++||+.+ ...+. .+.+|...|.+++|+|++ +.+++|+.|++| ++||+++.+.
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i--~iwd~~~~~~ 261 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI--RLCDMRASAL 261 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE--EEEETTTCSS
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE--EEEECcCCcc
Confidence 99999999998 799999999984 33333 367899999999999998 999999999996 6999988775
Q ss_pred ----EEEeecCcee----------eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-ceeeEEeeccccc-----------
Q psy4754 193 ----VACYKKDSIL----------FGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNHLMGHENR----------- 246 (304)
Q Consensus 193 ----~~~~~~~~~~----------~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h~~~----------- 246 (304)
+..+..+... ..+.+++|+|+|++|++++. +.|++||+.+ ++.+..+.+|...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence 4555544310 15789999999999999998 9999999987 7788888888642
Q ss_pred ----eEEEEEccCCCEEEEeecCCeeeeccccccch
Q psy4754 247 ----VSCLQVSPDGTAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 247 ----i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~ 278 (304)
+..++|+|++.+|++|+.|+.|++|+...+..
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 33499999999999999999999999876543
No 70
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-36 Score=266.12 Aligned_cols=260 Identities=17% Similarity=0.202 Sum_probs=207.4
Q ss_pred eEEeeccccceEeeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeC----CCce------eeeeecC--------
Q psy4754 6 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDS----LKCC------RVNHLMG-------- 66 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~----~~~~------~~~~~~~-------- 66 (304)
+.+||+...... +....+...|++++|+|+++ +||+|+.||.|++||+ .+++ ....+..
T Consensus 27 ~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 27 DSSDDLDGFVKI--LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp -------CCCEE--CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccchhhhhh--eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 566777665433 23333345699999999999 9999999999999999 7776 3444433
Q ss_pred --CcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCC
Q psy4754 67 --HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 144 (304)
Q Consensus 67 --h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~ 144 (304)
|.+.|.+++|+|++++|++|+.|+.+ ++|| ...+.+..+..+. ..+.++.|+|+++++++++.|+.|++||+.
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i--~i~~-~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGEL--RLWN-KTGALLNVLNFHR--APIVSVKWNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCE--EEEE-TTSCEEEEECCCC--SCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeE--EEEe-CCCCeeeeccCCC--ccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence 68899999999999999999999995 6899 5555666555433 357889999999999999999999999986
Q ss_pred ccccc--------------------------------------------------------eeccCcccceeEEEEcCCC
Q psy4754 145 KCCRV--------------------------------------------------------NHLMGHENRVSCLQVSPDG 168 (304)
Q Consensus 145 ~~~~~--------------------------------------------------------~~~~~h~~~v~~v~~sp~~ 168 (304)
+.+.+ ..+.+|...|.+++|+|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 54332 2334688899999999999
Q ss_pred cEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceE
Q psy4754 169 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 248 (304)
Q Consensus 169 ~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~ 248 (304)
+.+++++.|+.+ ++||+++.+.+..+..+. ..+.+++|+|++ ++++++.|+.|++||+.+++.+..+..|..+|.
T Consensus 260 ~~l~~~~~d~~i--~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 334 (425)
T 1r5m_A 260 KLLLSASDDGTL--RIWHGGNGNSQNCFYGHS--QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334 (425)
T ss_dssp TEEEEEETTSCE--EEECSSSBSCSEEECCCS--SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred CEEEEEcCCCEE--EEEECCCCccceEecCCC--ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence 999999999996 689999887777665443 357899999999 999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 249 CLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 249 ~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+++|+|++.+|++++.|+.|++|+.....
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 99999999999999999999999987654
No 71
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.3e-36 Score=285.35 Aligned_cols=247 Identities=24% Similarity=0.383 Sum_probs=208.6
Q ss_pred ccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCc-----eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEe
Q psy4754 24 SILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKC-----CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 97 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~-----~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~w 97 (304)
.|...|++++|+|++ .+|+||+.|++|++||+.+. ...+.+.+|...|.+++|+|++++|+||+.|++| ++|
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v--~vw 457 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL--RLW 457 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE--EEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE--EEE
Confidence 455569999999875 79999999999999998653 3456788999999999999999999999999995 799
Q ss_pred eeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce---eccCcccceeEEEEcCCC--cEEE
Q psy4754 98 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN---HLMGHENRVSCLQVSPDG--TAFS 172 (304)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~v~~sp~~--~~la 172 (304)
|+.+......+..+. ..+.+++|+|+++++++|+.|++|++||........ ...+|...|.+++|+|++ ..++
T Consensus 458 d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 535 (694)
T 3dm0_A 458 DLAAGVSTRRFVGHT--KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535 (694)
T ss_dssp ETTTTEEEEEEECCS--SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred ECCCCcceeEEeCCC--CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence 999988887776543 357899999999999999999999999976543322 235799999999999987 5899
Q ss_pred EeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEE
Q psy4754 173 SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 252 (304)
Q Consensus 173 s~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 252 (304)
+++.|++| ++||+++.+....+..+. ..+++++|+|++++|++|+.|++|++||+.+++.+..+. +...|.+++|
T Consensus 536 s~s~d~~v--~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~ 610 (694)
T 3dm0_A 536 SASWDKTV--KVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCF 610 (694)
T ss_dssp EEETTSCE--EEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEE
T ss_pred EEeCCCeE--EEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEE
Confidence 99999996 699999888777776554 467999999999999999999999999999998887775 4568999999
Q ss_pred ccCCCEEEEeecCCeeeeccccccchhh
Q psy4754 253 SPDGTAFSSGSWDTTLRDEESKNRYMQY 280 (304)
Q Consensus 253 sp~g~~lasgs~D~~i~~~~~~~~~~~~ 280 (304)
+|++..|++++ |+.|++|++..+....
T Consensus 611 sp~~~~l~~~~-~~~i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 611 SPNRYWLCAAT-EHGIKIWDLESKSIVE 637 (694)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred cCCCcEEEEEc-CCCEEEEECCCCCChh
Confidence 99998887765 6779999987655433
No 72
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-35 Score=269.72 Aligned_cols=259 Identities=22% Similarity=0.327 Sum_probs=219.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEEC--CC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS--PD 79 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s--~d 79 (304)
.|++|++||+.+++.+..+. .+...|.+++|+|++ ++++|+.||+|++||+.+++.+..+.+|..+|.+++|+ ++
T Consensus 140 ~dg~i~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 216 (464)
T 3v7d_B 140 DDKMIRVYDSINKKFLLQLS--GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216 (464)
T ss_dssp TTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSS
T ss_pred CCCcEEEEECCCCcEEEEEe--CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCC
Confidence 47899999999998876654 445569999999988 99999999999999999999999999999999999998 57
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCeeEeE-----------------------EeccceeeceeeeEEcCCCCEEEEEeCCC
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADKEVAC-----------------------YKKDSILFGATSVDFSVSGRLLFAGYNDY 136 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~~~~~-----------------------~~~~~~~~~~~~~~~s~~~~~l~sg~~dg 136 (304)
+++|++|+.|+++ ++||+........ ...+ .. ....+++++.++++|+.|+
T Consensus 217 ~~~l~s~s~d~~i--~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~v~~~~~~~~~l~~~~~d~ 290 (464)
T 3v7d_B 217 IKYIVTGSRDNTL--HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH--MA--SVRTVSGHGNIVVSGSYDN 290 (464)
T ss_dssp CEEEEEEETTSCE--EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC--SS--CEEEEEEETTEEEEEETTS
T ss_pred CCEEEEEcCCCcE--EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc--cc--eEEEEcCCCCEEEEEeCCC
Confidence 7899999999996 6899986553321 1111 11 1234578899999999999
Q ss_pred eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCE
Q psy4754 137 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL 216 (304)
Q Consensus 137 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 216 (304)
.|++||+.+.+.+..+.+|...|.+++|+|+++.+++|+.|+++ ++||+++++.+..+..+. ..+.+++|+ +++
T Consensus 291 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i--~vwd~~~~~~~~~~~~h~--~~v~~~~~~--~~~ 364 (464)
T 3v7d_B 291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI--RIWDLENGELMYTLQGHT--ALVGLLRLS--DKF 364 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEEC--SSE
T ss_pred eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE--EEEECCCCcEEEEEeCCC--CcEEEEEEc--CCE
Confidence 99999999998888999999999999999999999999999996 689999998888876654 356788886 689
Q ss_pred EEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 217 LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 217 l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
|++|+.|++|++||+.++...... .|...+..++|+|++.+|++|+ |+.|++|+...+.
T Consensus 365 l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 365 LVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred EEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 999999999999999887766554 3677888999999999999999 9999999987754
No 73
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.1e-36 Score=274.76 Aligned_cols=270 Identities=19% Similarity=0.187 Sum_probs=204.2
Q ss_pred cceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCcee--eeeecCCcCcEEEEEECC-CCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 27 FGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCR--VNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 27 ~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~~--~~~~~~h~~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
..|+|++|+|. +.+||+|+.||+|+|||+.+++. ...+.+|.++|++|+|+| ++++|+|||.|++| ++||+...
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v--~iwd~~~~ 197 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT--RLQDFKGN 197 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE--EEEETTSC
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE--EEeeccCC
Confidence 34999999994 57999999999999999987653 344578999999999998 78999999999996 78999865
Q ss_pred eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCc-EEEEeecCCceE
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLR 181 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~d~~i~ 181 (304)
........+.....+.+++|++++.++++|+.||.|++||+.. +.+..+.+|...|.+++|+|++. ++++|+.|++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v- 275 (435)
T 4e54_B 198 ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTV- 275 (435)
T ss_dssp EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBC-
T ss_pred ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCccee-
Confidence 4433333333333467899999999999999999999999864 55677889999999999999875 78899999996
Q ss_pred EEEeeecCCceEEEee-cCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecccc------ceEEEEEcc
Q psy4754 182 CRLFDLRADKEVACYK-KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN------RVSCLQVSP 254 (304)
Q Consensus 182 i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~------~i~~l~~sp 254 (304)
++||++..+....+. ...+...|++++|+|+|++|++|+.|++|++||+.++.....+..|.. .+....|+|
T Consensus 276 -~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (435)
T 4e54_B 276 -KIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP 354 (435)
T ss_dssp -CEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS
T ss_pred -eEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC
Confidence 689998765433221 112234678999999999999999999999999998887777766643 234456777
Q ss_pred CCCEEEEee------------cCCeeeeccccccchhheeeccccCCcee--EEEEEecCCccC
Q psy4754 255 DGTAFSSGS------------WDTTLRDEESKNRYMQYLLRSRITKPTQG--LTVYFQDRGRSI 304 (304)
Q Consensus 255 ~g~~lasgs------------~D~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 304 (304)
++..+++++ .++.|++|+...+.....+.. .+..+ ...+|+|+|+.|
T Consensus 355 ~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~---~~~~~v~s~~~fspdg~~l 415 (435)
T 4e54_B 355 RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD---PESSGISSLNEFNPMGDTL 415 (435)
T ss_dssp SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC---SSCCCCCCEEEECTTSSCE
T ss_pred CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC---CCCCcEEEEEEECCCCCEE
Confidence 777776664 335789998766543332221 11222 234678877653
No 74
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.6e-36 Score=290.44 Aligned_cols=246 Identities=21% Similarity=0.299 Sum_probs=218.9
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
|...|++++|+|+|++|++|+.||.|++||..+++.+..+.+|..+|.+++|+|++++|++|+.|+.+ ++||+.+++.
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i--~vw~~~~~~~ 89 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI--RVFNYNTGEK 89 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE--EEEETTTCCE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE--EEEECCCCcE
Confidence 44559999999999999999999999999999999999999999999999999999999999999995 7899998888
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc-ccceeccCcccceeEEEEcC-CCcEEEEeecCCceEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRC 182 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~sp-~~~~las~s~d~~i~i 182 (304)
+..+..+. ..+.++.|+|+++++++++.|+.|++||+.+. .....+.+|..+|.+++|+| +++.+++++.|+++
T Consensus 90 ~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v-- 165 (814)
T 3mkq_A 90 VVDFEAHP--DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV-- 165 (814)
T ss_dssp EEEEECCS--SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE--
T ss_pred EEEEecCC--CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE--
Confidence 77776543 35789999999999999999999999998876 55667789999999999999 88999999999996
Q ss_pred EEeeecCCceEEEeecCceeeeeeEEEEcC--CCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEE
Q psy4754 183 RLFDLRADKEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS 260 (304)
Q Consensus 183 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~la 260 (304)
++||+++.+....+..+. ...+..++|+| ++++|++|+.|+.|++||..++..+..+.+|..+|.+++|+|++.+|+
T Consensus 166 ~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (814)
T ss_dssp EEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred EEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 689998777655554332 13568899999 999999999999999999999999999999999999999999999999
Q ss_pred EeecCCeeeeccccccc
Q psy4754 261 SGSWDTTLRDEESKNRY 277 (304)
Q Consensus 261 sgs~D~~i~~~~~~~~~ 277 (304)
+++.|+.|++|+...+.
T Consensus 245 ~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 245 SGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp EEETTSCEEEEETTTCS
T ss_pred EEeCCCeEEEEECCCCc
Confidence 99999999999986643
No 75
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.8e-36 Score=266.12 Aligned_cols=253 Identities=17% Similarity=0.178 Sum_probs=213.1
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce------eeeeecCCcCcEEEEEECCC----C---CeEEEEeCCC
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC------RVNHLMGHENRVSCLQVSPD----G---TAFSSGSWDT 90 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~------~~~~~~~h~~~V~~l~~s~d----~---~~l~sgs~D~ 90 (304)
.|...|++++|+| ++|++|+.||+|++||+.+++ .+..+.+|..+|.+++|+|+ + ++|++++.|+
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 4455699999998 899999999999999998877 67788899999999999999 9 9999999999
Q ss_pred ceEEEEeeeCCCee-----EeEEeccce---eeceeeeEEc----CCCCE-EEEEeCCCeEEEecCCc------cccce-
Q psy4754 91 TLRCRLFDLRADKE-----VACYKKDSI---LFGATSVDFS----VSGRL-LFAGYNDYTINVWDSLK------CCRVN- 150 (304)
Q Consensus 91 ~i~~~~wd~~~~~~-----~~~~~~~~~---~~~~~~~~~s----~~~~~-l~sg~~dg~i~iwd~~~------~~~~~- 150 (304)
.| ++||+...+. ...+..+.. ...+.++.|+ |++.+ +++++.|+.|++||+.+ ...+.
T Consensus 92 ~i--~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 169 (397)
T 1sq9_A 92 DL--LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 169 (397)
T ss_dssp CE--EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CE--EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeec
Confidence 95 7899987665 555544310 1357889999 99999 99999999999999887 66665
Q ss_pred ----ec-------cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeec---Cc-eeeeeeEEEEcCCCC
Q psy4754 151 ----HL-------MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK---DS-ILFGATSVDFSVSGR 215 (304)
Q Consensus 151 ----~~-------~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~---~~-~~~~~~~~~~s~~g~ 215 (304)
.+ ..|...|.+++|+|++ .+++++.|+.+ ++||+++.+.+..+.. +. ....+.+++|+|+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~ 246 (397)
T 1sq9_A 170 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTV--QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 246 (397)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEE--EEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcE--EEEECCCCceeEEEeccccccccCCccceEEECCCCC
Confidence 66 4488999999999999 99999999986 6999999888777765 30 024678999999999
Q ss_pred EEEEEeCC---CcEEEEeCCCceeeEEeec-------------cccceEEEEEccCCCEEEEeecCCeeeeccccccchh
Q psy4754 216 LLFAGYND---YTINVWDSLKCCRVNHLMG-------------HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQ 279 (304)
Q Consensus 216 ~l~sg~~d---~~i~iwd~~~~~~~~~~~~-------------h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~ 279 (304)
+|++++.| +.|++||+.+++.+..+.+ |...|.+++|+|++++|++++.|+.|++|+.......
T Consensus 247 ~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 326 (397)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 99999999 9999999999999999998 9999999999999999999999999999998765544
Q ss_pred heee
Q psy4754 280 YLLR 283 (304)
Q Consensus 280 ~~~~ 283 (304)
..++
T Consensus 327 ~~~~ 330 (397)
T 1sq9_A 327 TTLN 330 (397)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 76
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-36 Score=269.88 Aligned_cols=269 Identities=15% Similarity=0.163 Sum_probs=209.4
Q ss_pred EeeccccceEeeeeccccccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCC---ceeee-e-ecCCcCcEEEEEECCCCC
Q psy4754 8 LFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLK---CCRVN-H-LMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 8 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~---~~~~~-~-~~~h~~~V~~l~~s~d~~ 81 (304)
.|+.. ++.+..+. ..|...|++++|+| ++++|++|+.||+|++||+.+ +...+ . ..+|..+|.+++|+|+++
T Consensus 47 ~w~~~-g~~~~~~~-~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 124 (437)
T 3gre_A 47 MGNLR-GKLIATLM-ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD 124 (437)
T ss_dssp GGGCC-CCEEEEEC-TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSS
T ss_pred ccccc-ceEEeeec-cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCC
Confidence 46643 44444331 23445699999999 999999999999999999876 33221 1 225999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeC---CCeeEeEEeccc----------eeeceeeeE--EcCCCCEEEEEeCCCeEEEecCCcc
Q psy4754 82 AFSSGSWDTTLRCRLFDLR---ADKEVACYKKDS----------ILFGATSVD--FSVSGRLLFAGYNDYTINVWDSLKC 146 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~---~~~~~~~~~~~~----------~~~~~~~~~--~s~~~~~l~sg~~dg~i~iwd~~~~ 146 (304)
+|++|+.|+++ ++||+. .++.......+. ....+.++. +++++.++++|+.|+.|++||+++.
T Consensus 125 ~l~s~s~dg~i--~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 202 (437)
T 3gre_A 125 AFAVSSKDGQI--IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL 202 (437)
T ss_dssp EEEEEETTSEE--EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC
T ss_pred EEEEEeCCCEE--EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 99999999995 789984 333333222110 111233343 5678999999999999999999998
Q ss_pred ccceeccC--cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEE----cCCCCEEEEE
Q psy4754 147 CRVNHLMG--HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF----SVSGRLLFAG 220 (304)
Q Consensus 147 ~~~~~~~~--h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~----s~~g~~l~sg 220 (304)
+.+..+.+ |...|.+++|+|+++.+++|+.|+++ ++||+++.+.+..+..... ..+.++++ +|++.+|++|
T Consensus 203 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i--~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~ 279 (437)
T 3gre_A 203 ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGII--DIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGG 279 (437)
T ss_dssp CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCE--EEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEE
T ss_pred eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeE--EEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEE
Confidence 88888887 89999999999999999999999996 6999999888777652221 36788854 4678899999
Q ss_pred eCCCcEEEEeCCCceeeEEeec--------------------------cccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 221 YNDYTINVWDSLKCCRVNHLMG--------------------------HENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 221 ~~d~~i~iwd~~~~~~~~~~~~--------------------------h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
+.|+.|++||+.+++.+..+.+ |...|++++|+ ++.+|++|+.|+.|++|++.
T Consensus 280 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 280 SSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp STTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred cCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence 9999999999999888877764 45668889999 77999999999999999998
Q ss_pred ccchhheeec
Q psy4754 275 NRYMQYLLRS 284 (304)
Q Consensus 275 ~~~~~~~~~~ 284 (304)
.+.....+..
T Consensus 359 ~~~~~~~~~~ 368 (437)
T 3gre_A 359 ELSSSKAVIS 368 (437)
T ss_dssp CGGGCEEEEC
T ss_pred CcccceEEec
Confidence 7765555543
No 77
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.8e-35 Score=263.47 Aligned_cols=256 Identities=25% Similarity=0.425 Sum_probs=219.3
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++++..+. .+...|.+++|+ +.++++|+.||+|++||+.+++.+..+.+|...|.+++|+ ++
T Consensus 137 ~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~ 210 (445)
T 2ovr_B 137 DDNTLKVWSAVTGKCLRTLV--GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EK 210 (445)
T ss_dssp TTSCEEEEETTTCCEEEECC--CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TT
T ss_pred CCCcEEEEECCCCcEEEEEc--CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CC
Confidence 47899999999998876654 445569999997 6799999999999999999999999999999999999996 67
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
.|++|+.|+++ ++||+.+.+.+..+..+. ..+.++.+ ++.++++|+.|+.|++||+.+.+.+.++.+|...|.+
T Consensus 211 ~l~s~s~dg~i--~~wd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 284 (445)
T 2ovr_B 211 RVVSGSRDATL--RVWDIETGQCLHVLMGHV--AAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 284 (445)
T ss_dssp EEEEEETTSEE--EEEESSSCCEEEEEECCS--SCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE
T ss_pred EEEEEeCCCEE--EEEECCCCcEEEEEcCCc--ccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEE
Confidence 89999999995 789999888877766543 24567776 7889999999999999999998888889999999999
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 241 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~ 241 (304)
++| +++.+++++.|+.+ ++||+++++.+..+..+.. .+.++. ++++++++|+.|+.|++||+.+++.+..+.
T Consensus 285 ~~~--~~~~l~~~~~d~~i--~i~d~~~~~~~~~~~~~~~--~v~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 285 LQF--DGIHVVSGSLDTSI--RVWDVETGNCIHTLTGHQS--LTSGME--LKDNILVSGNADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp EEE--CSSEEEEEETTSCE--EEEETTTCCEEEEECCCCS--CEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEE--CCCEEEEEeCCCeE--EEEECCCCCEEEEEcCCcc--cEEEEE--EeCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 999 78899999999996 6899999888877765542 344444 467899999999999999999999998888
Q ss_pred c---cccceEEEEEccCCCEEEEeecCCeeeeccccccchh
Q psy4754 242 G---HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQ 279 (304)
Q Consensus 242 ~---h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~ 279 (304)
+ |...|.+++|+ +.+|++|+.|++|++|+...+...
T Consensus 357 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred cCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCcee
Confidence 7 88999999995 689999999999999998765533
No 78
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=259.03 Aligned_cols=244 Identities=14% Similarity=0.149 Sum_probs=197.8
Q ss_pred cccceeEEEEcCCCC-EEEEeeC---CCcEEEEeCCCceeeee-ecCCcCcEEEEEECCC---CCeEEEEeCCCceEEEE
Q psy4754 25 ILFGATSVDFSVSGR-LLFAGYN---DYTINVWDSLKCCRVNH-LMGHENRVSCLQVSPD---GTAFSSGSWDTTLRCRL 96 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~-~l~tg~~---dg~v~iwd~~~~~~~~~-~~~h~~~V~~l~~s~d---~~~l~sgs~D~~i~~~~ 96 (304)
|...|.+++|+|++. ++++|+. ||.|++||+.+++.... ..+|..+|.+++|+|+ +++|++|+.|+.+ ++
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i--~i 94 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL--HI 94 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE--EE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE--EE
Confidence 455699999999986 5567766 99999999988765543 3479999999999998 6999999999995 78
Q ss_pred eeeCCCe-eEeEEeccceeeceeee------EEcCCCCEEEEEeCCCeEEEecCCccc-cceeccCccc----ceeEEE-
Q psy4754 97 FDLRADK-EVACYKKDSILFGATSV------DFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHLMGHEN----RVSCLQ- 163 (304)
Q Consensus 97 wd~~~~~-~~~~~~~~~~~~~~~~~------~~s~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~----~v~~v~- 163 (304)
||+...+ .+..+..+.. .+.++ +|+++++++++++.|+.|++||+.+.. .+..+..|.. .+.+++
T Consensus 95 wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKGHKE--IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAF 172 (357)
T ss_dssp ECTTSCSSCSEEECCCSS--CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEE
T ss_pred EeCCCCCccEEEEEeccc--ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEE
Confidence 9998776 5555554332 35566 467899999999999999999998876 5666655544 788888
Q ss_pred ---EcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcC---CCCEEEEEeCCCcEEEEeCCCceee
Q psy4754 164 ---VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV---SGRLLFAGYNDYTINVWDSLKCCRV 237 (304)
Q Consensus 164 ---~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~---~g~~l~sg~~d~~i~iwd~~~~~~~ 237 (304)
|+|+++.+++++.|+.+ ++||+++.+........ ..+.+++|+| ++++|++|+.|+.|++||+.++..+
T Consensus 173 ~~~~~~~~~~l~~~~~d~~i--~i~d~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 173 GNAYNQEERVVCAGYDNGDI--KLFDLRNMALRWETNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247 (357)
T ss_dssp ECCCC-CCCEEEEEETTSEE--EEEETTTTEEEEEEECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred EeccCCCCCEEEEEccCCeE--EEEECccCceeeecCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence 78899999999999986 69999988765443322 3578999999 9999999999999999998876665
Q ss_pred EEee-----ccccceEEEEEccCCC-EEEEeecCCeeeeccccccc
Q psy4754 238 NHLM-----GHENRVSCLQVSPDGT-AFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 238 ~~~~-----~h~~~i~~l~~sp~g~-~lasgs~D~~i~~~~~~~~~ 277 (304)
..+. +|...|++++|+|++. +|++|+.|+.|++|+...+.
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 5444 8999999999999998 89999999999999987543
No 79
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=288.67 Aligned_cols=141 Identities=12% Similarity=0.054 Sum_probs=117.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee-----------eeecCCcCc
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-----------NHLMGHENR 70 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~-----------~~~~~h~~~ 70 (304)
.|++|++||+.+++++..+. +...|++++|+|++++|++|+.||+|++||+.+++.. ..+.+|.++
T Consensus 77 ~D~~v~lWd~~~~~~~~~~~---~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~ 153 (902)
T 2oaj_A 77 AKDTVYVLSLYSQKVLTTVF---VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP 153 (902)
T ss_dssp TTCEEEEEETTTCSEEEEEE---CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC
T ss_pred CcCeEEEEECCCCcEEEEEc---CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCC
Confidence 47899999999998877664 2345999999999999999999999999999887643 345789999
Q ss_pred EEEEEECCC-CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc----------------eeeceeeeEEcCCCCEEEEEe
Q psy4754 71 VSCLQVSPD-GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS----------------ILFGATSVDFSVSGRLLFAGY 133 (304)
Q Consensus 71 V~~l~~s~d-~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~----------------~~~~~~~~~~s~~~~~l~sg~ 133 (304)
|.+++|+|+ +..|++|+.|++ + +||+.+.+.+..+..+. ....+.+++|+|++.+|++|+
T Consensus 154 V~sl~~sp~~~~~l~~g~~dg~--v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs 230 (902)
T 2oaj_A 154 IVSIQWNPRDIGTVLISYEYVT--L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH 230 (902)
T ss_dssp CCEEEEETTEEEEEEEECSSCE--E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEccCCCCEEEEEeCCCc--E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence 999999996 468999999998 5 89999988877665430 012478999999999999999
Q ss_pred CCCeEEEecCCcccc
Q psy4754 134 NDYTINVWDSLKCCR 148 (304)
Q Consensus 134 ~dg~i~iwd~~~~~~ 148 (304)
.|+.|++||+.+++.
T Consensus 231 ~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 231 EDNSLVFWDANSGHM 245 (902)
T ss_dssp TTCCEEEEETTTCCE
T ss_pred CCCeEEEEECCCCcE
Confidence 999999999876554
No 80
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.3e-35 Score=258.01 Aligned_cols=258 Identities=12% Similarity=0.136 Sum_probs=210.7
Q ss_pred CCceeEEeeccccceE-eeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeC-CCceeeeeecC--CcCcEEEEEE
Q psy4754 2 GKNHCRLFDLRADKEV-ACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDS-LKCCRVNHLMG--HENRVSCLQV 76 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~-~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~-~~~~~~~~~~~--h~~~V~~l~~ 76 (304)
.|++|++||+.+++.. .......+...|++++|+|+++ +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|
T Consensus 31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~ 109 (342)
T 1yfq_A 31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICK 109 (342)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEE
T ss_pred CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEe
Confidence 4789999999988711 1111123445699999999999 9999999999999999 77654 66788 9999999999
Q ss_pred CCCCCeEEEEeCCCceEEEEeeeCC---------CeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc-c
Q psy4754 77 SPDGTAFSSGSWDTTLRCRLFDLRA---------DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-C 146 (304)
Q Consensus 77 s~d~~~l~sgs~D~~i~~~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~-~ 146 (304)
+| ++.|++++.|+.+ ++||+.. .+.+..+.. ...+.++.|++++ +++++.|+.|++||+.+ .
T Consensus 110 ~~-~~~l~s~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~ 181 (342)
T 1yfq_A 110 YG-DDKLIAASWDGLI--EVIDPRNYGDGVIAVKNLNSNNTKV---KNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCE 181 (342)
T ss_dssp ET-TTEEEEEETTSEE--EEECHHHHTTBCEEEEESCSSSSSS---CCCEEEEEECSSE--EEEEESTTEEEEEESSCCT
T ss_pred CC-CCEEEEEcCCCeE--EEEcccccccccccccCCeeeEEee---CCceEEEEecCCc--EEEEeCCCeEEEEECCccc
Confidence 99 9999999999995 7899876 444433332 2246788999876 99999999999999987 4
Q ss_pred cc--ceeccCcccceeEEEEcC-CCcEEEEeecCCceEEEEeeecCC------ceEEEeecCce-------eeeeeEEEE
Q psy4754 147 CR--VNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRAD------KEVACYKKDSI-------LFGATSVDF 210 (304)
Q Consensus 147 ~~--~~~~~~h~~~v~~v~~sp-~~~~las~s~d~~i~i~~~d~~~~------~~~~~~~~~~~-------~~~~~~~~~ 210 (304)
.. ......|...|.+++|+| +++.+++++.|+.+ ++|+++.. +....+..+.. ...+.+++|
T Consensus 182 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (342)
T 1yfq_A 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV--AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259 (342)
T ss_dssp TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEE--EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE
T ss_pred cccceeeecCCCCceeEEEECCCCCCEEEEEecCCcE--EEEEEcCCCcccccccceeeecccccccccccceeEEEEEE
Confidence 32 224457888999999999 99999999999996 57887665 55555554432 236789999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc-ccceEEEEEccCCCEEEEeecCCe-eeecc
Q psy4754 211 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-ENRVSCLQVSPDGTAFSSGSWDTT-LRDEE 272 (304)
Q Consensus 211 s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-~~~i~~l~~sp~g~~lasgs~D~~-i~~~~ 272 (304)
+|++++|++|+.|+.|++||+.+++.+..+.+| .++|.+++ |++.+|++|+.|++ .+.+.
T Consensus 260 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 260 SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 999999999999999999999999999999998 99999999 99999999999999 76665
No 81
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.8e-35 Score=265.43 Aligned_cols=254 Identities=24% Similarity=0.355 Sum_probs=213.4
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++....+. .+...|.+++| ++.+|++|+.||+|++||+.+++.+..+.+|...|.+++|+ ++
T Consensus 151 ~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~ 224 (435)
T 1p22_A 151 RDNTIKIWDKNTLECKRILT--GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NG 224 (435)
T ss_dssp SSSCEEEEESSSCCEEEEEC--CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TT
T ss_pred CCCeEEEEeCCCCeEEEEEc--CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CC
Confidence 47899999999998876654 34456899998 78899999999999999999999999999999999999997 45
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeE---eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccc
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEV---ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 158 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 158 (304)
.|++|+.|+++ ++||+...... .....+ ...+.++.+ +++++++|+.|+.|++||+.+.+.+..+.+|...
T Consensus 225 ~l~s~s~dg~i--~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (435)
T 1p22_A 225 MMVTCSKDRSI--AVWDMASPTDITLRRVLVGH--RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 298 (435)
T ss_dssp EEEEEETTSCE--EEEECSSSSCCEEEEEECCC--SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EEEEeeCCCcE--EEEeCCCCCCceeeeEecCC--CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCc
Confidence 99999999996 78999876654 222222 224566666 7889999999999999999999888899999999
Q ss_pred eeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce---
Q psy4754 159 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--- 235 (304)
Q Consensus 159 v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~--- 235 (304)
|.+++++ ++.+++|+.|+.+ ++||+++++.+..+..+. ..+.+++| ++.+|++|+.||.|++||+.++.
T Consensus 299 v~~~~~~--~~~l~~g~~dg~i--~iwd~~~~~~~~~~~~h~--~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 370 (435)
T 1p22_A 299 IACLQYR--DRLVVSGSSDNTI--RLWDIECGACLRVLEGHE--ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPR 370 (435)
T ss_dssp EEEEEEE--TTEEEEEETTSCE--EEEETTTCCEEEEECCCS--SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred EEEEEeC--CCEEEEEeCCCeE--EEEECCCCCEEEEEeCCc--CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 9999994 6799999999996 699999998888776554 35677777 88999999999999999987655
Q ss_pred ------eeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 236 ------RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 236 ------~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
.+..+.+|.++|.+++| ++.+|++|+.|++|++|+...+.
T Consensus 371 ~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 371 APAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp SCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred ccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 78889999999999999 78899999999999999986644
No 82
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.4e-35 Score=295.83 Aligned_cols=247 Identities=27% Similarity=0.363 Sum_probs=218.8
Q ss_pred cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 23 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 23 ~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
..|...|++++|+|+|+++++|+.||+|++||..+++.+..+.+|.++|.+++|+|++++|++|+.|++| ++||+.++
T Consensus 612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v--~vwd~~~~ 689 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV--KIWDSATG 689 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE--EEEETTTC
T ss_pred ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeE--EEEECCCC
Confidence 3455569999999999999999999999999999999999999999999999999999999999999995 78999998
Q ss_pred eeEeEEeccceeeceeeeEEcC--CCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 103 KEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
+.+..+..+. ..+.++.|+| ++..+++|+.|+.|++||+.++..+..+.+|...|.+++|+|+++.+++++.|+++
T Consensus 690 ~~~~~~~~~~--~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 690 KLVHTYDEHS--EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp CEEEEEECCS--SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred ceEEEEcCCC--CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 8888776543 3578899999 55689999999999999999998888899999999999999999999999999996
Q ss_pred EEEEeeecCCceEEEeecC-----------------------------------------------------ceeeeeeE
Q psy4754 181 RCRLFDLRADKEVACYKKD-----------------------------------------------------SILFGATS 207 (304)
Q Consensus 181 ~i~~~d~~~~~~~~~~~~~-----------------------------------------------------~~~~~~~~ 207 (304)
++||+++.+....+... .....+.+
T Consensus 768 --~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~ 845 (1249)
T 3sfz_A 768 --RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845 (1249)
T ss_dssp --EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCE
T ss_pred --EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEE
Confidence 68998776544332110 11134678
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 208 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 208 ~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
++|+|+++++++++.|+.|++||..++..+..+.+|..+|.+++|+|+|..|++++.|++|++|+...
T Consensus 846 ~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998754
No 83
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.7e-34 Score=268.45 Aligned_cols=289 Identities=16% Similarity=0.171 Sum_probs=223.3
Q ss_pred CCceeEEeeccccceEeeeecccccc---ceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCceeeeee-c---CCcCcEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILF---GATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHL-M---GHENRVSC 73 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~---~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~~~~~~-~---~h~~~V~~ 73 (304)
.|++|++||+.+++....+.. +.. .|++++|+|+ +++|++|+.||.|++||+.+++.+..+ . +|..+|.+
T Consensus 181 ~d~~v~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 181 DDGSVVFYQGPPFKFSASDRT--HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 258 (615)
T ss_dssp TTTEEEEEETTTBEEEEEECS--SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred CCCcEEEEeCCCcceeeeecc--cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEE
Confidence 368999999999988766553 344 6999999999 999999999999999999999988888 6 89999999
Q ss_pred EEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc--eeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee
Q psy4754 74 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS--ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151 (304)
Q Consensus 74 l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 151 (304)
++|+ ++++|++++.|+.+ ++||+.+.+.+..+..+. ....+..+.++ ++.++++++.|+.|++||+.+.+.+..
T Consensus 259 ~~~~-~~~~l~~~~~d~~i--~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~ 334 (615)
T 1pgu_A 259 LSWL-DSQKFATVGADATI--RVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKT 334 (615)
T ss_dssp EEES-SSSEEEEEETTSEE--EEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEE
T ss_pred EEEc-CCCEEEEEcCCCcE--EEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEE
Confidence 9999 99999999999995 789999888877766541 11234566665 888999999999999999988777777
Q ss_pred ccCcccceeEEEEcCC---------------------------------CcEEEEeecCCceEEEEeeecCCc-------
Q psy4754 152 LMGHENRVSCLQVSPD---------------------------------GTAFSSGSWDTTLRCRLFDLRADK------- 191 (304)
Q Consensus 152 ~~~h~~~v~~v~~sp~---------------------------------~~~las~s~d~~i~i~~~d~~~~~------- 191 (304)
+.+|...|.+++| |+ +..+++++.|+.+ ++||+.+.+
T Consensus 335 ~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i--~~~~~~~~~~~~~~~~ 411 (615)
T 1pgu_A 335 ISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTL--KVNGITKHEFGSQPKV 411 (615)
T ss_dssp ECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEE--EETTEEEEECSSCEEE
T ss_pred EeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCE--EEEEcccCcccCCceE
Confidence 7666666655555 43 5566666666664 456543211
Q ss_pred --------------------------------------------------------eEEEe----------ecCceeeee
Q psy4754 192 --------------------------------------------------------EVACY----------KKDSILFGA 205 (304)
Q Consensus 192 --------------------------------------------------------~~~~~----------~~~~~~~~~ 205 (304)
.+..+ ........+
T Consensus 412 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v 491 (615)
T 1pgu_A 412 ASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP 491 (615)
T ss_dssp EEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred EEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCce
Confidence 01110 011122357
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec-cccceEEEEEcc----------CCCEEEEeecCCeeeecccc
Q psy4754 206 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-HENRVSCLQVSP----------DGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 206 ~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~-h~~~i~~l~~sp----------~g~~lasgs~D~~i~~~~~~ 274 (304)
.+++|+|++++|++|+.|+.|++||+.+++.+..+.+ |...|++++|+| ++++|++|+.|++|++|+..
T Consensus 492 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 571 (615)
T 1pgu_A 492 SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 571 (615)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred EEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECC
Confidence 8999999999999999999999999999999998888 999999999999 99999999999999999987
Q ss_pred ccchhheeeccccCCce-eEEEEEecCCc
Q psy4754 275 NRYMQYLLRSRITKPTQ-GLTVYFQDRGR 302 (304)
Q Consensus 275 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 302 (304)
.+.... .....+.. =..+.|+|+++
T Consensus 572 ~~~~~~---~~~~~h~~~v~~l~~s~~~~ 597 (615)
T 1pgu_A 572 RPMKII---KALNAHKDGVNNLLWETPST 597 (615)
T ss_dssp CTTCCE---EETTSSTTCEEEEEEEETTE
T ss_pred CCceec---hhhhcCccceEEEEEcCCCC
Confidence 653111 11222333 34577777765
No 84
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8e-35 Score=293.11 Aligned_cols=267 Identities=19% Similarity=0.251 Sum_probs=216.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC--C
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP--D 79 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~--d 79 (304)
.|++|++||+.+++.+..+. .+...|.+++|+|+|++|++|+.||+|++||+.+++.+..+.+|..+|.+++|+| +
T Consensus 635 ~d~~i~vw~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 712 (1249)
T 3sfz_A 635 ADKTLQVFKAETGEKLLDIK--AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712 (1249)
T ss_dssp TTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred CCCeEEEEECCCCCEEEEec--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCC
Confidence 47899999999998876655 4455699999999999999999999999999999999999999999999999999 4
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee--------
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-------- 151 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~-------- 151 (304)
+.++++|+.|+++ ++||+.+++....+..+. ..+.++.|+|+++++++++.||.|++||+.+......
T Consensus 713 ~~~l~sg~~d~~v--~vwd~~~~~~~~~~~~h~--~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 788 (1249)
T 3sfz_A 713 HLLLATGSNDFFL--KLWDLNQKECRNTMFGHT--NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 788 (1249)
T ss_dssp CCEEEEEETTSCE--EEEETTSSSEEEEECCCS--SCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-
T ss_pred ceEEEEEeCCCeE--EEEECCCcchhheecCCC--CCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccccc
Confidence 5589999999995 789999888877665543 3578899999999999999999999999765432211
Q ss_pred -----------------------------------------------ccCcccceeEEEEcCCCcEEEEeecCCceEEEE
Q psy4754 152 -----------------------------------------------LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184 (304)
Q Consensus 152 -----------------------------------------------~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~ 184 (304)
..+|...|.+++|+|+++.+++++.|+.+ ++
T Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v--~v 866 (1249)
T 3sfz_A 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCV--EL 866 (1249)
T ss_dssp -------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCE--EE
T ss_pred ccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeE--EE
Confidence 12678899999999999999999999996 68
Q ss_pred eeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEE-----------------------------------
Q psy4754 185 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW----------------------------------- 229 (304)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iw----------------------------------- 229 (304)
||+.+.+.+..+..+. ..+.+++|+|+|+++++++.|+.|++|
T Consensus 867 wd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1249)
T 3sfz_A 867 WNIDSRLKVADCRGHL--SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIR 944 (1249)
T ss_dssp EETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSS
T ss_pred EEcCCCceeeecCCCc--cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCc
Confidence 9988776665554432 234555555555555555555555555
Q ss_pred --------------------------------------------eCCCceeeEEeeccccceEEEEEccCCCEEEEeecC
Q psy4754 230 --------------------------------------------DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 230 --------------------------------------------d~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D 265 (304)
|..++..+..+.+|...|.+++|+|+|++|++++.|
T Consensus 945 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d 1024 (1249)
T 3sfz_A 945 GLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED 1024 (1249)
T ss_dssp SEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS
T ss_pred ceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC
Confidence 444555666777899999999999999999999999
Q ss_pred Ceeeeccccccch
Q psy4754 266 TTLRDEESKNRYM 278 (304)
Q Consensus 266 ~~i~~~~~~~~~~ 278 (304)
++|++|+...+..
T Consensus 1025 g~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 1025 SVIQVWNWQTGDY 1037 (1249)
T ss_dssp SBEEEEETTTTEE
T ss_pred CEEEEEECCCCce
Confidence 9999999876543
No 85
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.4e-35 Score=254.90 Aligned_cols=242 Identities=18% Similarity=0.242 Sum_probs=195.3
Q ss_pred ccccceeEEEEcCC---CCEEEEeeCCCcEEEEeCCC-ceee-eeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEee
Q psy4754 24 SILFGATSVDFSVS---GRLLFAGYNDYTINVWDSLK-CCRV-NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 98 (304)
Q Consensus 24 ~~~~~i~~~~~~~~---g~~l~tg~~dg~v~iwd~~~-~~~~-~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd 98 (304)
.|...|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|++++.|+++ ++||
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v--~iwd 114 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA--KMWD 114 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE--EEEE
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcE--EEEE
Confidence 44556999999999 69999999999999999986 5444 6788899999999999999999999999995 7899
Q ss_pred eCCCeeEeEEeccceeeceeeeEE--cCCCCEEEEEeCCCeEEEecCCccccceeccCcc--------------------
Q psy4754 99 LRADKEVACYKKDSILFGATSVDF--SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-------------------- 156 (304)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-------------------- 156 (304)
+.+.+........ ..+.++.| ++++.++++++.|+.|++||+++.+.+..+..|.
T Consensus 115 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 3mmy_A 115 LSSNQAIQIAQHD---APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERG 191 (368)
T ss_dssp TTTTEEEEEEECS---SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGC
T ss_pred cCCCCceeecccc---CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCc
Confidence 9988776544322 24678888 8999999999999999999998876655544332
Q ss_pred ---------------------cceeEEEEcCCCcE----EEEeecCCceEEEEeeecCC---ceEEEeecCcee------
Q psy4754 157 ---------------------NRVSCLQVSPDGTA----FSSGSWDTTLRCRLFDLRAD---KEVACYKKDSIL------ 202 (304)
Q Consensus 157 ---------------------~~v~~v~~sp~~~~----las~s~d~~i~i~~~d~~~~---~~~~~~~~~~~~------ 202 (304)
..+.++.+.++... +++++.|+.+ ++||++.. +....+..+...
T Consensus 192 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (368)
T 3mmy_A 192 LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV--AIHYINPPNPAKDNFTFKCHRSNGTNTSA 269 (368)
T ss_dssp EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEE--EEEESSCSCHHHHSEEEECSEEC----CC
T ss_pred EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcE--EEEecCCCCccccceeeeeeecccccccc
Confidence 23344444443332 8999999986 58988775 334444443311
Q ss_pred ----eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 203 ----FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 203 ----~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
..+++++|+|++++|++|+.|+.|++||+.+++++..+.+|..+|.+++|+|+|++|+++|.|+..+.|+
T Consensus 270 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp CEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred cccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 1478999999999999999999999999999999999999999999999999999999999987665443
No 86
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-34 Score=246.67 Aligned_cols=259 Identities=19% Similarity=0.174 Sum_probs=210.3
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC-
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD- 102 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~- 102 (304)
.|...|++++| |++.+|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++|+.|+.+ ++|++...
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i--~~~~~~~~~ 92 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI--NGVPLFATS 92 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE--EEEETTCCT
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeE--EEEEeeecC
Confidence 44556999999 999999999999999999999998888889999999999999999999999999996 67887643
Q ss_pred --eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcC-CCcEEEEeecCCc
Q psy4754 103 --KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTT 179 (304)
Q Consensus 103 --~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~d~~ 179 (304)
+.+..+..+. ..+.++.| +++++++++.|+.|++|| .......+..|..++.++++.| +++.+++++.|+.
T Consensus 93 ~~~~~~~~~~~~--~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 166 (313)
T 3odt_A 93 GEDPLYTLIGHQ--GNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT 166 (313)
T ss_dssp TSCC-CEECCCS--SCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC
T ss_pred CCCcccchhhcc--cCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCC
Confidence 3344443332 24567777 578999999999999999 4556677889999999999988 8999999999999
Q ss_pred eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEE
Q psy4754 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 259 (304)
Q Consensus 180 i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~l 259 (304)
+ ++||.. +....+... ....+.+++|+|++. +++++.|+.|++||+.+++.+..+.+|..+|++++|+|++ .|
T Consensus 167 i--~i~d~~--~~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 239 (313)
T 3odt_A 167 I--KLWQND--KVIKTFSGI-HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DI 239 (313)
T ss_dssp E--EEEETT--EEEEEECSS-CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CE
T ss_pred E--EEEecC--ceEEEEecc-CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CE
Confidence 6 689943 344444431 124578999999999 8899999999999999999999999999999999999999 69
Q ss_pred EEeecCCeeeeccccccchhheeeccccCCce-eEEEEEecCCc
Q psy4754 260 SSGSWDTTLRDEESKNRYMQYLLRSRITKPTQ-GLTVYFQDRGR 302 (304)
Q Consensus 260 asgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 302 (304)
++++.|+.|++|+...+.....+. .+.. -..+.+.|+++
T Consensus 240 ~~~~~dg~v~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 240 VSCGEDRTVRIWSKENGSLKQVIT----LPAISIWSVDCMSNGD 279 (313)
T ss_dssp EEEETTSEEEEECTTTCCEEEEEE----CSSSCEEEEEECTTSC
T ss_pred EEEecCCEEEEEECCCCceeEEEe----ccCceEEEEEEccCCC
Confidence 999999999999987764333332 2222 34566777665
No 87
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.4e-35 Score=262.81 Aligned_cols=263 Identities=13% Similarity=0.186 Sum_probs=201.1
Q ss_pred CCceeEEeeccccc-----------eEeeeeccccc----------cceeEEEEcCCC--CEEEEeeCCCcEEEEeCCCc
Q psy4754 2 GKNHCRLFDLRADK-----------EVACYKKDSIL----------FGATSVDFSVSG--RLLFAGYNDYTINVWDSLKC 58 (304)
Q Consensus 2 ~~~~v~~wd~~~~~-----------~~~~~~~~~~~----------~~i~~~~~~~~g--~~l~tg~~dg~v~iwd~~~~ 58 (304)
.|++|+|||+.+++ ....+..+... ..|++++|+|++ ..|++++.||+|++||+.++
T Consensus 48 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~ 127 (447)
T 3dw8_B 48 KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISER 127 (447)
T ss_dssp TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEE
T ss_pred CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccc
Confidence 37899999999876 23333322111 459999999998 79999999999999998764
Q ss_pred eee---------------------------------------ee-ecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEee
Q psy4754 59 CRV---------------------------------------NH-LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 98 (304)
Q Consensus 59 ~~~---------------------------------------~~-~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd 98 (304)
... +. ..+|...|.+++|+|++++|++| .|+++ ++||
T Consensus 128 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i--~iwd 204 (447)
T 3dw8_B 128 DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRI--NLWH 204 (447)
T ss_dssp EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEE--EEEE
T ss_pred cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeE--EEEE
Confidence 331 12 36799999999999999999998 79985 7899
Q ss_pred eCC-CeeEeEE-----eccceeeceeeeEEcCCC-CEEEEEeCCCeEEEecCCcccc----ceeccCccc----------
Q psy4754 99 LRA-DKEVACY-----KKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCR----VNHLMGHEN---------- 157 (304)
Q Consensus 99 ~~~-~~~~~~~-----~~~~~~~~~~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~~----~~~~~~h~~---------- 157 (304)
+.. .+.+..+ ........+.+++|+|++ .++++|+.|+.|++||+++... +..+.+|..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (447)
T 3dw8_B 205 LEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEI 284 (447)
T ss_dssp TTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHH
T ss_pred CCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcccccccccc
Confidence 984 3333322 111222347899999998 9999999999999999988775 567777776
Q ss_pred --ceeEEEEcCCCcEEEEeecCCceEEEEeeecC-CceEEEeecCceee-------------eeeEEEEcCCCCEEEEEe
Q psy4754 158 --RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA-DKEVACYKKDSILF-------------GATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 158 --~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~-~~~~~~~~~~~~~~-------------~~~~~~~s~~g~~l~sg~ 221 (304)
.|.+++|+|+++++++++. +.+ ++||++. .+.+..+..+.... .+..++|+|++++|++|+
T Consensus 285 ~~~v~~~~~s~~g~~l~~~~~-~~v--~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s 361 (447)
T 3dw8_B 285 ISSISDVKFSHSGRYMMTRDY-LSV--KVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS 361 (447)
T ss_dssp TTCEEEEEECTTSSEEEEEES-SEE--EEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC
T ss_pred CceEEEEEECCCCCEEEEeeC-CeE--EEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEec
Confidence 8999999999999999998 875 6999987 66666665443211 123489999999999999
Q ss_pred CCCcEEEEeCCCceeeEEeec---------------------------------cccceEEEEEccCCCEEEEeecCCee
Q psy4754 222 NDYTINVWDSLKCCRVNHLMG---------------------------------HENRVSCLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 222 ~d~~i~iwd~~~~~~~~~~~~---------------------------------h~~~i~~l~~sp~g~~lasgs~D~~i 268 (304)
.|+.|++||+.+++.+ .+.+ +...|.+++|+|++.+||+++.|+ +
T Consensus 362 ~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~ 439 (447)
T 3dw8_B 362 YNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-L 439 (447)
T ss_dssp STTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-E
T ss_pred cCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-e
Confidence 9999999999887655 3333 345789999999999999998876 6
Q ss_pred eecc
Q psy4754 269 RDEE 272 (304)
Q Consensus 269 ~~~~ 272 (304)
.+|.
T Consensus 440 ~~~~ 443 (447)
T 3dw8_B 440 YIFQ 443 (447)
T ss_dssp EEEE
T ss_pred eeec
Confidence 6663
No 88
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.2e-35 Score=256.56 Aligned_cols=245 Identities=12% Similarity=0.061 Sum_probs=201.9
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce---eeeeecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeee-
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---RVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDL- 99 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~---~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~- 99 (304)
|...|++++|+|++++|++|+.||.|++||+.+++ ....+.+|...|.+++|+|+++ +|++|+.|+.| ++||+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i--~~wd~~ 87 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI--LKVDLI 87 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE--EEECSS
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE--EEEEec
Confidence 44559999999999999999999999999998765 3455668999999999999999 99999999995 78999
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc---------cccceeccCcccceeEEEEcCCCcE
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK---------CCRVNHLMGHENRVSCLQVSPDGTA 170 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~v~~sp~~~~ 170 (304)
..... ..+........+.++.|+| +.++++++.|+.|++||+.+ .+.+..+. |...|.+++|+|++
T Consensus 88 ~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-- 162 (342)
T 1yfq_A 88 GSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-- 162 (342)
T ss_dssp SSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--
T ss_pred cCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--
Confidence 76654 3333300223578899999 99999999999999999887 66666555 88999999999987
Q ss_pred EEEeecCCceEEEEeeecC-CceEEEeecCceeeeeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCc------eeeEEeec
Q psy4754 171 FSSGSWDTTLRCRLFDLRA-DKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKC------CRVNHLMG 242 (304)
Q Consensus 171 las~s~d~~i~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~sg~~d~~i~iwd~~~~------~~~~~~~~ 242 (304)
+++++.|+.+ ++||+++ ...............+.+++|+| +++++++++.|+.|++|+.... ..+..+.+
T Consensus 163 l~~~~~d~~i--~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 163 LIVGMNNSQV--QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp EEEEESTTEE--EEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred EEEEeCCCeE--EEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence 8999999986 6899987 44321111112224678999999 9999999999999999998776 67777888
Q ss_pred ccc---------ceEEEEEccCCCEEEEeecCCeeeeccccccch
Q psy4754 243 HEN---------RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 243 h~~---------~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~ 278 (304)
|.. +|.+++|+|++++|++|+.|+.|++|+...+..
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH
Confidence 865 999999999999999999999999999876553
No 89
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-35 Score=259.95 Aligned_cols=272 Identities=14% Similarity=0.138 Sum_probs=216.4
Q ss_pred cccceeEEEEcCC----CCEEEEeeCCCcEEEEeCCCceeeeeecC-----CcCcEEEEEECCC----CCeEEEEeCCCc
Q psy4754 25 ILFGATSVDFSVS----GRLLFAGYNDYTINVWDSLKCCRVNHLMG-----HENRVSCLQVSPD----GTAFSSGSWDTT 91 (304)
Q Consensus 25 ~~~~i~~~~~~~~----g~~l~tg~~dg~v~iwd~~~~~~~~~~~~-----h~~~V~~l~~s~d----~~~l~sgs~D~~ 91 (304)
|...|++++|+|+ ...+++++.++.|++||..+++.+..+.. |...|.+++|+|+ +++|++|+.|+.
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~ 96 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 96 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCE
Confidence 4456999999984 45666777777999999998776665543 5678999999999 669999999998
Q ss_pred eEEEEeeeCCCeeEeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceec---cCcccceeEEEEcCC
Q psy4754 92 LRCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHL---MGHENRVSCLQVSPD 167 (304)
Q Consensus 92 i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~v~~sp~ 167 (304)
| ++||+.+.+.+..+..+. ..+.++.|+| ++.++++++.|+.|++||+.+.+.+..+ .+|...|.+++|+|+
T Consensus 97 i--~v~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 97 I--RIINPITMQCIKHYVGHG--NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp E--EEECTTTCCEEEEEESCC--SCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred E--EEEEchhceEeeeecCCC--CcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 5 789999888887776443 3578999999 8999999999999999999988877776 689999999999999
Q ss_pred CcEEEEeecCCceEEEEeeecCCceEEEeec--------------------------CceeeeeeEEEEcCCCCEEEEEe
Q psy4754 168 GTAFSSGSWDTTLRCRLFDLRADKEVACYKK--------------------------DSILFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 168 ~~~las~s~d~~i~i~~~d~~~~~~~~~~~~--------------------------~~~~~~~~~~~~s~~g~~l~sg~ 221 (304)
++.+++++.|+.+ ++||+++.+....+.. ......+.+++|+ +++|++++
T Consensus 173 ~~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 173 GEKIMSCGMDHSL--KLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp SSEEEEEETTSCE--EEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCEEEEecCCCCE--EEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 9999999999996 6899987654322211 0022357888998 78999999
Q ss_pred CCCcEEEEeCCCce--------------eeEEeeccccceEEEEEccC--CCEEEEeecCCeeeeccccccchhheeecc
Q psy4754 222 NDYTINVWDSLKCC--------------RVNHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRDEESKNRYMQYLLRSR 285 (304)
Q Consensus 222 ~d~~i~iwd~~~~~--------------~~~~~~~h~~~i~~l~~sp~--g~~lasgs~D~~i~~~~~~~~~~~~~~~~~ 285 (304)
.|+.|++||+.+.. .+..+.+|...|++++|+|+ +++|++|+.|+.|++|+...+.........
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 99999999987653 37788899999999999999 999999999999999998776543322223
Q ss_pred ccCC--ce-eEEEEEecCCccC
Q psy4754 286 ITKP--TQ-GLTVYFQDRGRSI 304 (304)
Q Consensus 286 ~~~~--~~-~~~~~~~~~~~~~ 304 (304)
...+ .. =..+.++|+++.|
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l 350 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSIL 350 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEE
T ss_pred EcccccCCceEEEEeCCCCCeE
Confidence 3333 22 3457778877643
No 90
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.8e-35 Score=249.67 Aligned_cols=235 Identities=17% Similarity=0.191 Sum_probs=182.0
Q ss_pred eeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC--eeEeEEeccceeeceeeeEEcCC--CCEEEEEeCCCe
Q psy4754 62 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD--KEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYT 137 (304)
Q Consensus 62 ~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~--~~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~ 137 (304)
..+.+|.++|.+++|+|+|++|+||+.|++| ++||+... +.+..+..+. ..+.+++|+++ +++|++|+.|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v--~iw~~~~~~~~~~~~l~gH~--~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTI--KIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCE--EEEEBCSSCBCCCEEECCCS--SCEEEEEECCGGGCSEEEEEETTTE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEE--EEEecCCCCcEEEEEEcccc--CCeEEEEecCCCcCCEEEEEcCCCE
Confidence 3467899999999999999999999999996 78998643 4445555443 35788999764 889999999999
Q ss_pred EEEecCCccc--cceeccCcccceeEEEEcCC--CcEEEEeecCCceEEEEeeecCCce--EEEeecCceeeeeeEEEEc
Q psy4754 138 INVWDSLKCC--RVNHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDLRADKE--VACYKKDSILFGATSVDFS 211 (304)
Q Consensus 138 i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~--~~~las~s~d~~i~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s 211 (304)
|++||+.++. .+..+.+|...|.+++|+|+ +..+++++.|+++ ++||+++... ...+..+. ..+.+++|+
T Consensus 79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v--~~wd~~~~~~~~~~~~~~h~--~~v~~~~~~ 154 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKV--SVVEFKENGTTSPIIIDAHA--IGVNSASWA 154 (297)
T ss_dssp EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEE--EEEEBCSSSCBCCEEEECCS--SCEEEEEEC
T ss_pred EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcE--EEEEecCCCceeeeeeeccc--CccceEeec
Confidence 9999987653 45567889999999999997 8899999999996 6899886532 22333332 457899999
Q ss_pred CC-------------CCEEEEEeCCCcEEEEeCCCce----eeEEeeccccceEEEEEccCC---CEEEEeecCCeeeec
Q psy4754 212 VS-------------GRLLFAGYNDYTINVWDSLKCC----RVNHLMGHENRVSCLQVSPDG---TAFSSGSWDTTLRDE 271 (304)
Q Consensus 212 ~~-------------g~~l~sg~~d~~i~iwd~~~~~----~~~~~~~h~~~i~~l~~sp~g---~~lasgs~D~~i~~~ 271 (304)
|+ +++|++|+.|++|++||+.++. .+..+.+|..+|.+++|+|++ .+|||||.|++|++|
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 97 5799999999999999987654 566788999999999999985 899999999999999
Q ss_pred cccccchhheeecc-ccCCce-eEEEEEecCCccC
Q psy4754 272 ESKNRYMQYLLRSR-ITKPTQ-GLTVYFQDRGRSI 304 (304)
Q Consensus 272 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ 304 (304)
+.+....+...+.. ...... -..+.|+|+|+.|
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 269 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 269 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEE
Confidence 98654311111000 011122 3567888887654
No 91
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.2e-34 Score=278.02 Aligned_cols=262 Identities=18% Similarity=0.250 Sum_probs=224.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.+++|+|||+.+++....+. .+...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|+++
T Consensus 33 ~~g~v~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 110 (814)
T 3mkq_A 33 YSGRVEIWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP 110 (814)
T ss_dssp TTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred CCCEEEEEECCCCceEEEEe--cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCC
Confidence 36899999999998776655 3445699999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCceEEEEeeeCCC-eeEeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceeccCcc-cc
Q psy4754 82 AFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-NR 158 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~-~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-~~ 158 (304)
+|++++.|+++ ++||+... .....+..+. ..+.++.|+| ++..+++++.|+.|++||+.+......+..+. ..
T Consensus 111 ~l~~~~~dg~i--~vw~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 186 (814)
T 3mkq_A 111 YVLSGSDDLTV--KLWNWENNWALEQTFEGHE--HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186 (814)
T ss_dssp EEEEEETTSEE--EEEEGGGTSEEEEEEECCS--SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTC
T ss_pred EEEEEcCCCEE--EEEECCCCceEEEEEcCCC--CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCC
Confidence 99999999996 68999876 4444444432 2467899999 88899999999999999998777666665544 88
Q ss_pred eeEEEEcC--CCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 159 VSCLQVSP--DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 159 v~~v~~sp--~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
+.+++|+| ++..+++++.|+.+ ++||+++.+.+..+..+. ..+.+++|+|+++++++++.|+.|++||..+++.
T Consensus 187 v~~~~~~~~~~~~~l~~~~~dg~i--~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 187 VNYVDYYPLPDKPYMITASDDLTI--KIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp CCEEEECCSTTCCEEEEECTTSEE--EEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred EEEEEEEECCCCCEEEEEeCCCEE--EEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 99999999 99999999999985 689999888877776543 3578999999999999999999999999999999
Q ss_pred eEEeeccccceEEEEEccCCC--EEEEeecCCeeeecccc
Q psy4754 237 VNHLMGHENRVSCLQVSPDGT--AFSSGSWDTTLRDEESK 274 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~--~lasgs~D~~i~~~~~~ 274 (304)
+..+..|..+|.+++|+|+|. .+++++ |..+.+|+..
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 301 (814)
T 3mkq_A 263 EKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLG 301 (814)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECS
T ss_pred EEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcC
Confidence 999999999999999999987 455554 6667777653
No 92
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.6e-34 Score=257.97 Aligned_cols=234 Identities=25% Similarity=0.341 Sum_probs=203.6
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
++++.| ++.+|++|+.||+|++||+.+++.+..+.+|.++|.+++|+|++ .|++|+.|+++ ++||+.+++.+..+
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i--~vwd~~~~~~~~~~ 199 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTV--RVWDIKKGCCTHVF 199 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCE--EEEETTTTEEEEEE
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCE--EEEECCCCcEEEEE
Confidence 566666 56799999999999999999999999999999999999999987 99999999996 78999998888777
Q ss_pred eccceeeceeeeEEc--CCCCEEEEEeCCCeEEEecCCcccc-----------------------ceeccCcccceeEEE
Q psy4754 109 KKDSILFGATSVDFS--VSGRLLFAGYNDYTINVWDSLKCCR-----------------------VNHLMGHENRVSCLQ 163 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s--~~~~~l~sg~~dg~i~iwd~~~~~~-----------------------~~~~~~h~~~v~~v~ 163 (304)
..+. ..+.++.|+ +++.++++|+.|+.|++||+.+... +..+.+|...|.++
T Consensus 200 ~~h~--~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 276 (464)
T 3v7d_B 200 EGHN--STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV- 276 (464)
T ss_dssp CCCS--SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE-
T ss_pred CCCC--CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE-
Confidence 6543 246677777 5778999999999999999876542 33467888888877
Q ss_pred EcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc
Q psy4754 164 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 243 (304)
Q Consensus 164 ~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h 243 (304)
+|+++.+++++.|+.+ ++||+++.+.+..+..+. ..+.+++|+|+++++++|+.|+.|++||+.+++.+..+.+|
T Consensus 277 -~~~~~~l~~~~~d~~i--~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h 351 (464)
T 3v7d_B 277 -SGHGNIVVSGSYDNTL--IVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 351 (464)
T ss_dssp -EEETTEEEEEETTSCE--EEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred -cCCCCEEEEEeCCCeE--EEEECCCCcEEEEecCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Confidence 5678899999999996 699999988887776554 46789999999999999999999999999999999999999
Q ss_pred ccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 244 ENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 244 ~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
...|.+++|+ +.+|++|+.|++|++|+.....
T Consensus 352 ~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 352 TALVGLLRLS--DKFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc
Confidence 9999999997 5899999999999999987654
No 93
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1e-33 Score=255.78 Aligned_cols=258 Identities=20% Similarity=0.324 Sum_probs=220.8
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
.|++|++||+.+++....+. .+...|.+++|+ +..+++|+.||+|++||+.+++.+..+.+|..+|.+++| +++
T Consensus 177 ~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~ 250 (445)
T 2ovr_B 177 TDRTLKVWNAETGECIHTLY--GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGR 250 (445)
T ss_dssp TTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSS
T ss_pred CCCeEEEEECCcCcEEEEEC--CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCC
Confidence 47899999999998776654 344568999985 578999999999999999999999999999999999999 688
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 161 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 161 (304)
+|++|+.|+.+ ++||+.+.+.+..+..+. ..+.++.| ++.++++++.|+.|++||+.+++.+..+.+|...+.+
T Consensus 251 ~l~~~~~dg~i--~iwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~ 324 (445)
T 2ovr_B 251 RVVSGAYDFMV--KVWDPETETCLHTLQGHT--NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 324 (445)
T ss_dssp CEEEEETTSCE--EEEEGGGTEEEEEECCCS--SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE
T ss_pred EEEEEcCCCEE--EEEECCCCcEeEEecCCC--CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEE
Confidence 99999999996 789999888887776443 24567777 7899999999999999999999888889999999998
Q ss_pred EEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc-eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 162 LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 162 v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
+.++ ++.+++++.|+.+ ++||+++++.+..+.... ....+.+++|+ +++|++|+.||.|++||+.+++.+..+
T Consensus 325 ~~~~--~~~l~~~~~dg~i--~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 325 MELK--DNILVSGNADSTV--KIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EEEE--TTEEEEEETTSCE--EEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEe--CCEEEEEeCCCeE--EEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 8875 5699999999996 689999988877776421 23457888885 689999999999999999999888887
Q ss_pred -----eccccceEEEEEccCCCEEEEeecCCe----eeeccccccc
Q psy4754 241 -----MGHENRVSCLQVSPDGTAFSSGSWDTT----LRDEESKNRY 277 (304)
Q Consensus 241 -----~~h~~~i~~l~~sp~g~~lasgs~D~~----i~~~~~~~~~ 277 (304)
.+|.+.|++++|+|++..+|+|+.|++ |.+||.+.+.
T Consensus 399 ~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 399 VTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp EECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred eccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 478899999999999999999999998 9999887653
No 94
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=253.47 Aligned_cols=255 Identities=13% Similarity=0.056 Sum_probs=201.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCC---------Cceeeeeec-CCcCcE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL---------KCCRVNHLM-GHENRV 71 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~---------~~~~~~~~~-~h~~~V 71 (304)
.|++|++||+.+++.+..+. ...|.++.|+|+ +++|+.|++|++|+.. +++.++.+. +|.++|
T Consensus 56 ~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v 128 (343)
T 3lrv_A 56 EDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEI 128 (343)
T ss_dssp ETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCE
T ss_pred CCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCE
Confidence 37899999999998876665 345788899988 9999999999999765 344344443 677899
Q ss_pred EEEEECC--CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc
Q psy4754 72 SCLQVSP--DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 149 (304)
Q Consensus 72 ~~l~~s~--d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~ 149 (304)
.+++|+| ++++|++|+.|+++ ++||+.+++......... ...+.+++|+|++.++++|+.|+.|++||+++++.+
T Consensus 129 ~~~~~~~~~~~~~l~s~s~dg~i--~~wd~~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~ 205 (343)
T 3lrv_A 129 IYMYGHNEVNTEYFIWADNRGTI--GFQSYEDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA 205 (343)
T ss_dssp EEEECCC---CCEEEEEETTCCE--EEEESSSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred EEEEcCCCCCCCEEEEEeCCCcE--EEEECCCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence 9999999 99999999999995 789999887765443321 224688999999999999999999999999988877
Q ss_pred -eeccC-cccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeec---CceeeeeeEEEEcCCCCEEEEEeC-C
Q psy4754 150 -NHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK---DSILFGATSVDFSVSGRLLFAGYN-D 223 (304)
Q Consensus 150 -~~~~~-h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~l~sg~~-d 223 (304)
..+.+ |..+|.+++|+|+++++++++.+ + +++||+++.+.+..+.. +.......+++|+|+|++|++++. |
T Consensus 206 ~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d 282 (343)
T 3lrv_A 206 SSRFPVDEEAKIKEVKFADNGYWMVVECDQ-T--VVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES 282 (343)
T ss_dssp CEECCCCTTSCEEEEEECTTSSEEEEEESS-B--EEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT
T ss_pred ccEEeccCCCCEEEEEEeCCCCEEEEEeCC-e--EEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCC
Confidence 67777 99999999999999999999944 6 47999998776544332 111111146999999999999988 9
Q ss_pred CcEEEEeCCCceeeEEeeccccceEEEEEcc---CCCEEEEeecCCeeeeccc
Q psy4754 224 YTINVWDSLKCCRVNHLMGHENRVSCLQVSP---DGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 224 ~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp---~g~~lasgs~D~~i~~~~~ 273 (304)
+.|++|+..+....... .++.+++|+| +...+++++.|+.++++-.
T Consensus 283 ~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 283 NSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp TEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 99999998655433222 6788899999 8999999999999998753
No 95
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2e-34 Score=259.70 Aligned_cols=246 Identities=20% Similarity=0.243 Sum_probs=205.1
Q ss_pred ccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCC----------ceeeeeecCCcCcEEEEEECCCCC-eEEEEeCCCc
Q psy4754 24 SILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLK----------CCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTT 91 (304)
Q Consensus 24 ~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~----------~~~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~ 91 (304)
.+...|++++|+|+ +.+|++|+.||.|++||+.+ ...+..+.+|...|.+++|+|+++ +|++|+.|++
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 34455999999997 67999999999999999976 567778889999999999999988 9999999999
Q ss_pred eEEEEeeeCCCee-------EeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCcc---ccceeccCccccee
Q psy4754 92 LRCRLFDLRADKE-------VACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKC---CRVNHLMGHENRVS 160 (304)
Q Consensus 92 i~~~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~ 160 (304)
| ++||+..... ...+..+ ...+.++.|+| ++..|++++.|+.|++||+++. ..+..+..|...|.
T Consensus 206 i--~vwd~~~~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 206 I--CLWDINATPKEHRVIDAKNIFTGH--TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp E--EEEETTSCCBGGGEEECSEEECCC--SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred E--EEEeCCCCCCCCceeccceeecCC--CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 5 7899976321 1222222 23478899999 6789999999999999999876 45666779999999
Q ss_pred EEEEcCCCc-EEEEeecCCceEEEEeeecCC-ceEEEeecCceeeeeeEEEEcCCCC-EEEEEeCCCcEEEEeCCC----
Q psy4754 161 CLQVSPDGT-AFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLK---- 233 (304)
Q Consensus 161 ~v~~sp~~~-~las~s~d~~i~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sg~~d~~i~iwd~~~---- 233 (304)
+++|+|+++ .+++|+.|+.| ++||++.. +.+..+..+. ..+.+++|+|+++ +|++++.|+.|++||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v--~vwd~~~~~~~~~~~~~h~--~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTV--ALWDLRNLKLKLHSFESHK--DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEE--EEEETTCTTSCSEEEECCS--SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred EEEeCCCCCCEEEEEeCCCeE--EEEeCCCCCCCeEEeecCC--CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 999999987 79999999996 69999873 4455555443 4679999999995 689999999999999876
Q ss_pred ----------ceeeEEeeccccceEEEEEccCCC-EEEEeecCCeeeeccccccc
Q psy4754 234 ----------CCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 234 ----------~~~~~~~~~h~~~i~~l~~sp~g~-~lasgs~D~~i~~~~~~~~~ 277 (304)
.+.+..+.+|...|.+++|+|++. +|++++.|+.|++|+.....
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 356777888999999999999999 99999999999999986654
No 96
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-35 Score=280.04 Aligned_cols=244 Identities=16% Similarity=0.151 Sum_probs=205.0
Q ss_pred ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCC--CceeeeeecCCcCcEEEEEECCC--CCeEEEEeCCCceEEEEeee
Q psy4754 24 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSL--KCCRVNHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 24 ~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~--~~~~~~~~~~h~~~V~~l~~s~d--~~~l~sgs~D~~i~~~~wd~ 99 (304)
.|...|++++|+|++++|++|+.||+|++||+. ++..+..+.+|.++|++++|+|+ +++|++|+.|++| ++||+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I--~vwd~ 84 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV--LIWKE 84 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCE--EEEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeE--EEEEC
Confidence 445569999999999999999999999999987 56777888999999999999988 8999999999996 78999
Q ss_pred CCCe--eEeEEeccceeeceeeeEEcCC--CCEEEEEeCCCeEEEecCCccc--cceeccCcccceeEEEEcC-------
Q psy4754 100 RADK--EVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVSP------- 166 (304)
Q Consensus 100 ~~~~--~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp------- 166 (304)
..++ .+..+..+ ...+.++.|+|+ +..+++|+.||.|++||+.+.. ....+.+|...|.+++|+|
T Consensus 85 ~~~~~~~~~~~~~h--~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 85 ENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp ETTEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred CCCcccccccccCC--CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 8876 33333332 335789999999 9999999999999999988763 3345678999999999999
Q ss_pred ------CCcEEEEeecCCceEEEEeeecCCc----eEEEeecCceeeeeeEEEEcCC---CCEEEEEeCCCcEEEEeCCC
Q psy4754 167 ------DGTAFSSGSWDTTLRCRLFDLRADK----EVACYKKDSILFGATSVDFSVS---GRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 167 ------~~~~las~s~d~~i~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~s~~---g~~l~sg~~d~~i~iwd~~~ 233 (304)
++..+++|+.|++| ++||+++.. ....+..+. ..+.+++|+|+ ++++++|+.|+.|++||+.+
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I--~iwd~~~~~~~~~~~~~~~~h~--~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLV--KIWKYNSDAQTYVLESTLEGHS--DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ----CGGGCCEEEEETTSCE--EEEEEETTTTEEEEEEEECCCS--SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ccccCCCCCEEEEEECCCeE--EEEeccCCcccceeeeeecCCC--CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 58899999999996 689998764 233333333 46899999999 99999999999999999877
Q ss_pred ce-----eeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 234 CC-----RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 234 ~~-----~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+. .+....+|...|++++|+|+|.+|++|+.|+.|++|+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 53 3334456889999999999999999999999999999874
No 97
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-34 Score=257.84 Aligned_cols=241 Identities=13% Similarity=0.074 Sum_probs=198.4
Q ss_pred ceeEEEEcCCCCEE-EEeeCCCcEEEEeCC--Cceeeeeec--CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 28 GATSVDFSVSGRLL-FAGYNDYTINVWDSL--KCCRVNHLM--GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 28 ~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~--~~~~~~~~~--~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
.|.+++|+|++++| ++|+.||+|++||+. +++.+..+. .|...|.+++|+|++++|++|+.|+.+ ++|++...
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v--~~~~~~~~ 181 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDV--YSIDINSI 181 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE--EEEETTSC
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcE--EEEecCCc
Confidence 48999999999986 899999999999998 787777775 567899999999999999999999985 78998765
Q ss_pred eeEe----EEeccceeeceeeeEEcCC---CCEEEEEeCCCeEEEecCCcccccee-ccCcccceeEEEEcCCCcEEEEe
Q psy4754 103 KEVA----CYKKDSILFGATSVDFSVS---GRLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRVSCLQVSPDGTAFSSG 174 (304)
Q Consensus 103 ~~~~----~~~~~~~~~~~~~~~~s~~---~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~ 174 (304)
.... .+..+ ...+.++.|+|+ ++++++|+.|+.|++||+.+...+.. +.+|...|.+++|+ ++++|+++
T Consensus 182 ~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~ 258 (450)
T 2vdu_B 182 PEEKFTQEPILGH--VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSA 258 (450)
T ss_dssp CCSSCCCCCSEEC--SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEE
T ss_pred ccccccceeeecc--cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEE
Confidence 5432 22222 235788999999 99999999999999999988877766 56899999999999 99999999
Q ss_pred ecCCceEEEEeeecCCceEEEeecC-----------------------ceeeeeeEEEEcCCCCEEEEEe-CCCcEEEEe
Q psy4754 175 SWDTTLRCRLFDLRADKEVACYKKD-----------------------SILFGATSVDFSVSGRLLFAGY-NDYTINVWD 230 (304)
Q Consensus 175 s~d~~i~i~~~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd 230 (304)
+.|++| ++||+++++.+..+... .....+..++|+|++++|++++ .|+.|++|+
T Consensus 259 ~~d~~v--~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 259 GGDDKI--FAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp ESSSEE--EEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred eCCCeE--EEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 999986 69999998877766532 1123478899999999999998 899999999
Q ss_pred C--CCc---eeeEEeeccccceEEEEEccCCCEEEEeec------CCeeeecccccc
Q psy4754 231 S--LKC---CRVNHLMGHENRVSCLQVSPDGTAFSSGSW------DTTLRDEESKNR 276 (304)
Q Consensus 231 ~--~~~---~~~~~~~~h~~~i~~l~~sp~g~~lasgs~------D~~i~~~~~~~~ 276 (304)
+ .++ ..+..+.+| +.|.+++|+|++.+++.++. +..|++|.++..
T Consensus 337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 337 MSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp ECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred eccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 9 555 677778888 89999999996555555554 556899976543
No 98
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-33 Score=263.82 Aligned_cols=246 Identities=14% Similarity=0.102 Sum_probs=211.8
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCc----eeeeeecCCcCc-EEEEEECC--CCCeEEEEeCCCceEEEEee
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC----CRVNHLMGHENR-VSCLQVSP--DGTAFSSGSWDTTLRCRLFD 98 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~----~~~~~~~~h~~~-V~~l~~s~--d~~~l~sgs~D~~i~~~~wd 98 (304)
...|++++|+|+|++|++++ ++.|++||+.++ +....+.+|.+. |.+++|+| ++++|++|+.|+++ ++||
T Consensus 18 ~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v--~vw~ 94 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV--IVWG 94 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE--EEEE
T ss_pred cCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEE--EEEe
Confidence 34599999999999999998 889999999988 888899999999 99999999 99999999999995 7899
Q ss_pred eCCC--------eeEeEEeccceeeceeeeEEcCCCCEEEEEeCC----CeEEEecCCccccceeccCcccceeEEEEcC
Q psy4754 99 LRAD--------KEVACYKKDSILFGATSVDFSVSGRLLFAGYND----YTINVWDSLKCCRVNHLMGHENRVSCLQVSP 166 (304)
Q Consensus 99 ~~~~--------~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp 166 (304)
+.++ .....+..+ ...+.+++|+|+++++++++.+ +.|.+|| ..+.+..+.+|...|.+++|+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~ 170 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVL--AGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQ 170 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECC--SSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECS
T ss_pred CCCCcccccccccccchhhcc--cccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECC
Confidence 9643 344444432 2357899999999999999988 7999999 4456778889999999999999
Q ss_pred CCc-EEEEeecCCceEEEEeeecCCceEEEeecCce-eeeeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCceeeEEe-e-
Q psy4754 167 DGT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSI-LFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHL-M- 241 (304)
Q Consensus 167 ~~~-~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~~-g~~l~sg~~d~~i~iwd~~~~~~~~~~-~- 241 (304)
+++ .+++++.|+.+ ++||+++.+.+..+..+.. ...+.+++|+|+ +++|++++.|+.|++||+.+++.+..+ .
T Consensus 171 ~~~~~l~~~~~d~~v--~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 248 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSV--VFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 248 (615)
T ss_dssp SSSCEEEEEETTTEE--EEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred CCCcEEEEEeCCCcE--EEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccc
Confidence 998 89999999996 6899998888777765432 015789999999 999999999999999999999999888 6
Q ss_pred --ccccceEEEEEccCCCEEEEeecCCeeeeccccccchhhe
Q psy4754 242 --GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYL 281 (304)
Q Consensus 242 --~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~ 281 (304)
+|..+|.+++|+ ++.+|++++.|+.|++|+...+.....
T Consensus 249 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~ 289 (615)
T 1pgu_A 249 QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQK 289 (615)
T ss_dssp TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 899999999999 999999999999999999876543333
No 99
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3e-34 Score=255.87 Aligned_cols=242 Identities=19% Similarity=0.217 Sum_probs=199.6
Q ss_pred eeEEEEcCCCC-EEEEeeCCCcEEEEeCCCce----eeeeecCCcCcEEEEEECC-CCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 29 ATSVDFSVSGR-LLFAGYNDYTINVWDSLKCC----RVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 29 i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~----~~~~~~~h~~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
...++++|+.. ++++|+.||.|++|++.+.. .+..+.+|.+.|.+++|+| ++++|++|+.|++| ++||+...
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v--~vw~~~~~ 114 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTV--MVWEIPDG 114 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEE--EEEECCTT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeE--EEEEccCC
Confidence 45688888875 44568999999999986542 3445778999999999999 89999999999995 78999876
Q ss_pred -------eeEeEEeccceeeceeeeEEcCCC-CEEEEEeCCCeEEEecCCccccceec--cCcccceeEEEEcCCCcEEE
Q psy4754 103 -------KEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHL--MGHENRVSCLQVSPDGTAFS 172 (304)
Q Consensus 103 -------~~~~~~~~~~~~~~~~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~v~~sp~~~~la 172 (304)
+.+..+..+. ..+.+++|+|++ .++++++.|+.|++||+.+++.+..+ .+|...|.+++|+|+++.|+
T Consensus 115 ~~~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHT--KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp CCSSCBCSCSEEEECCS--SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCccccCCceEEecCCC--CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 3444554433 357899999998 69999999999999999998888888 78999999999999999999
Q ss_pred EeecCCceEEEEeeecCCceEEEe-ecCceeeeeeEEEEcCCCCEEEEE---eCCCcEEEEeCCCcee-eEEe-eccccc
Q psy4754 173 SGSWDTTLRCRLFDLRADKEVACY-KKDSILFGATSVDFSVSGRLLFAG---YNDYTINVWDSLKCCR-VNHL-MGHENR 246 (304)
Q Consensus 173 s~s~d~~i~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~sg---~~d~~i~iwd~~~~~~-~~~~-~~h~~~ 246 (304)
+++.|+.+ ++||+++++.+..+ ..+.. ..+..++|+|++++|++| +.|+.|++||+.++.. +... ..|...
T Consensus 193 ~~~~d~~i--~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 269 (402)
T 2aq5_A 193 TSCRDKRV--RVIEPRKGTVVAEKDRPHEG-TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG 269 (402)
T ss_dssp EEETTSEE--EEEETTTTEEEEEEECSSCS-SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS
T ss_pred EEecCCcE--EEEeCCCCceeeeeccCCCC-CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc
Confidence 99999986 69999998887776 33321 236789999999999999 7899999999987554 3333 257788
Q ss_pred eEEEEEccCCCEEE-EeecCCeeeeccccccc
Q psy4754 247 VSCLQVSPDGTAFS-SGSWDTTLRDEESKNRY 277 (304)
Q Consensus 247 i~~l~~sp~g~~la-sgs~D~~i~~~~~~~~~ 277 (304)
|.+++|+|++.+|+ +|+.|+.|++|+...+.
T Consensus 270 v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 270 VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 99999999999986 56689999999987654
No 100
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.8e-32 Score=242.98 Aligned_cols=261 Identities=15% Similarity=0.196 Sum_probs=214.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
.|++|++||+.++++...+..+ ..+.+++|+|+|+++ ++++.|++|++||+.+++.+..+..|. .+.+++|+|++
T Consensus 10 ~d~~v~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg 85 (391)
T 1l0q_A 10 ESDNISVIDVTSNKVTATIPVG---SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDG 85 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECS---SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS
T ss_pred CCCEEEEEECCCCeEEEEeecC---CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCC
Confidence 4789999999999887665533 238999999999876 688899999999999999888877655 89999999999
Q ss_pred CeEE-EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEE-EEEeCCCeEEEecCCccccceeccCcccc
Q psy4754 81 TAFS-SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENR 158 (304)
Q Consensus 81 ~~l~-sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 158 (304)
++|+ +++.|+.| ++||+.+.+.+..+..+. .+.+++|+|+++++ ++++.++.|++||+.+.+.+..+..| ..
T Consensus 86 ~~l~~~~~~~~~v--~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~ 159 (391)
T 1l0q_A 86 KQVYVTNMASSTL--SVIDTTSNTVAGTVKTGK---SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RS 159 (391)
T ss_dssp SEEEEEETTTTEE--EEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SS
T ss_pred CEEEEEECCCCEE--EEEECCCCeEEEEEeCCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CC
Confidence 9775 55566885 789999888777665443 35789999999987 67788999999999888777666655 46
Q ss_pred eeEEEEcCCCcEE-EEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe---CCCcEEEEeCCCc
Q psy4754 159 VSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY---NDYTINVWDSLKC 234 (304)
Q Consensus 159 v~~v~~sp~~~~l-as~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~---~d~~i~iwd~~~~ 234 (304)
+.+++|+|+++.+ ++++.|+.+ ++||+++.+....+.... .+.+++|+|++++|++++ .++.|++||+.++
T Consensus 160 ~~~~~~~~dg~~l~~~~~~~~~v--~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVANFDSMSI--SVIDTVTNSVIDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEE--EEEETTTTEEEEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred cceEEECCCCCEEEEEeCCCCEE--EEEECCCCeEEEEEecCC---CccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 7999999999877 577778885 689999888776665443 467899999999999887 6899999999999
Q ss_pred eeeEEeeccccceEEEEEccCCCEE-EEeecCCeeeeccccccch
Q psy4754 235 CRVNHLMGHENRVSCLQVSPDGTAF-SSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 235 ~~~~~~~~h~~~i~~l~~sp~g~~l-asgs~D~~i~~~~~~~~~~ 278 (304)
+.+..+..|. .+.+++|+|+|++| ++++.|+.|++|+...+..
T Consensus 235 ~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 235 KITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp EEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred eEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 8888888765 57899999999877 6888999999999876543
No 101
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.6e-34 Score=251.48 Aligned_cols=224 Identities=13% Similarity=0.097 Sum_probs=175.5
Q ss_pred CCceeEEeeccccceEeee----ec---cccccceeEEEEcCCCCEEE--EeeCCCcEEEEeCCCceeeeeecCCcCcEE
Q psy4754 2 GKNHCRLFDLRADKEVACY----KK---DSILFGATSVDFSVSGRLLF--AGYNDYTINVWDSLKCCRVNHLMGHENRVS 72 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~----~~---~~~~~~i~~~~~~~~g~~l~--tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~ 72 (304)
.+++||+|++.+.+....+ +. ......+.+++|+|||++++ +++.|++|+|||+.+++.+..+. |...|.
T Consensus 102 ~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~ 180 (365)
T 4h5i_A 102 GNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVK 180 (365)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCC
T ss_pred CCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceE
Confidence 3678999998876432111 11 11122378999999999875 45579999999999999888775 778899
Q ss_pred EEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCC----eEEEecCCcccc
Q psy4754 73 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY----TINVWDSLKCCR 148 (304)
Q Consensus 73 ~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg----~i~iwd~~~~~~ 148 (304)
+++|+|||++|++++.|+. .+|+..+++.+...........+.+++|+|++.++++++.|+ .++.||+.....
T Consensus 181 ~v~fspdg~~l~s~s~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~ 257 (365)
T 4h5i_A 181 DLHFSTDGKVVAYITGSSL---EVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT 257 (365)
T ss_dssp EEEECTTSSEEEEECSSCE---EEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE
T ss_pred EEEEccCCceEEeccceeE---EEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee
Confidence 9999999999999997654 466666665554333222233467899999999999998877 688888754432
Q ss_pred ----ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEe-ecCceeeeeeEEEEcCCCCEEEEEeCC
Q psy4754 149 ----VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY-KKDSILFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 149 ----~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~sg~~d 223 (304)
...+.+|...|.+++|+||+++||+|+.|++| ++||+++++.+..+ ..+. ..|++++|+|||++||+|+.|
T Consensus 258 ~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V--~iwd~~~~~~~~~~~~gH~--~~V~~v~fSpdg~~laS~S~D 333 (365)
T 4h5i_A 258 SVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSI--ALVKLKDLSMSKIFKQAHS--FAITEVTISPDSTYVASVSAA 333 (365)
T ss_dssp EEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCE--EEEETTTTEEEEEETTSSS--SCEEEEEECTTSCEEEEEETT
T ss_pred cceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEE--EEEECCCCcEEEEecCccc--CCEEEEEECCCCCEEEEEeCC
Confidence 34567899999999999999999999999996 69999999887765 3343 468999999999999999999
Q ss_pred CcEEEEeCCC
Q psy4754 224 YTINVWDSLK 233 (304)
Q Consensus 224 ~~i~iwd~~~ 233 (304)
++|+|||++.
T Consensus 334 ~tvrvw~ip~ 343 (365)
T 4h5i_A 334 NTIHIIKLPL 343 (365)
T ss_dssp SEEEEEECCT
T ss_pred CeEEEEEcCC
Confidence 9999999864
No 102
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=8.9e-34 Score=242.89 Aligned_cols=242 Identities=14% Similarity=0.038 Sum_probs=176.7
Q ss_pred CCceeEEeecccc---ceEeeeecccc-------cc----------------ceeEEEEcCC----CCEEEEeeCCCcEE
Q psy4754 2 GKNHCRLFDLRAD---KEVACYKKDSI-------LF----------------GATSVDFSVS----GRLLFAGYNDYTIN 51 (304)
Q Consensus 2 ~~~~v~~wd~~~~---~~~~~~~~~~~-------~~----------------~i~~~~~~~~----g~~l~tg~~dg~v~ 51 (304)
+..+|++|++.++ +++++++.+.. .. .|.+++|+|+ ++++++++.+ ++
T Consensus 61 ~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~ 138 (356)
T 2w18_A 61 CEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KA 138 (356)
T ss_dssp ESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEE--EE
T ss_pred ccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCe--EE
Confidence 4568999999999 77777766431 11 3567888888 8888887754 77
Q ss_pred EEeCCCceeeee-ecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC---CCC
Q psy4754 52 VWDSLKCCRVNH-LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV---SGR 127 (304)
Q Consensus 52 iwd~~~~~~~~~-~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~ 127 (304)
+|++.+++.+.+ ..+|+..|..++++|+|+.+.+- ..+. ..+..++|++ ++.
T Consensus 139 v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~----------------------~~~~--~~v~~l~fs~~~g~~~ 194 (356)
T 2w18_A 139 VLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ----------------------FLMP--PEETILTFAEVQGMQE 194 (356)
T ss_dssp EEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE----------------------EECC--CSSCEEEEEEEETSTT
T ss_pred EEecCCCcEEEecccCCCCcEEEEEECCCCceeeee----------------------ccCC--CceeeEEeeccCCCCc
Confidence 788777776666 46677777777777777655431 1111 1235677888 789
Q ss_pred EEEEEeCCCeEEEecCCccccceeccCcc---cceeEEEEcCCCcEE------------EEeecCCceEEEEeeecCCce
Q psy4754 128 LLFAGYNDYTINVWDSLKCCRVNHLMGHE---NRVSCLQVSPDGTAF------------SSGSWDTTLRCRLFDLRADKE 192 (304)
Q Consensus 128 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h~---~~v~~v~~sp~~~~l------------as~s~d~~i~i~~~d~~~~~~ 192 (304)
.+++++.|++|++||+.+++.+.++.+|. ..+.+++|+|+++.+ ++|+.|+++ ++||..+++.
T Consensus 195 ~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI--klWd~~tgk~ 272 (356)
T 2w18_A 195 ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL--IVINPKTTLS 272 (356)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEE--EEEETTTTEE
T ss_pred eEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE--EEEECCCCEE
Confidence 99999999999999999999998887654 367778999999876 667888886 6899998877
Q ss_pred EEEee---cCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceE-EEEEccCCCEEEEeecCCee
Q psy4754 193 VACYK---KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS-CLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 193 ~~~~~---~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~-~l~~sp~g~~lasgs~D~~i 268 (304)
+..+. .......+ +..+.++.++++|+.|++|+|||+.+++.+.++.+|...+. +++|||||++|+|||.|++|
T Consensus 273 l~v~~~~~p~Gh~~~~--lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI 350 (356)
T 2w18_A 273 VGVMLYCLPPGQAGRF--LEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI 350 (356)
T ss_dssp EEEEEECCCTTCCCCE--EEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred EEEEEeeccCCCccee--EccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 65542 11111112 23333478899999999999999999999999999987655 68999999999999999999
Q ss_pred eeccc
Q psy4754 269 RDEES 273 (304)
Q Consensus 269 ~~~~~ 273 (304)
|+|++
T Consensus 351 klWd~ 355 (356)
T 2w18_A 351 FVYHY 355 (356)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99985
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-33 Score=252.69 Aligned_cols=239 Identities=13% Similarity=0.050 Sum_probs=199.5
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce---eeeeec--------------------------------------
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---RVNHLM-------------------------------------- 65 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~---~~~~~~-------------------------------------- 65 (304)
+.+++++|+++|++|+++ .++.|++||+.+++ .+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 457899999999977665 57899999998887 544443
Q ss_pred ----------------CCcCcEEEEEECCCCCeE-EEEeCCCceEEEEeeeC--CCeeEeEEeccceeeceeeeEEcCCC
Q psy4754 66 ----------------GHENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLR--ADKEVACYKKDSILFGATSVDFSVSG 126 (304)
Q Consensus 66 ----------------~h~~~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~--~~~~~~~~~~~~~~~~~~~~~~s~~~ 126 (304)
+|.+.|.+++|+|++++| ++|+.|+++ ++||+. .++.+..+..+.....+.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v--~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSL--LVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEE--EEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeE--EEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 234479999999999996 899999995 789998 77777666533222357899999999
Q ss_pred CEEEEEeCCCeEEEecCCccccce----eccCcccceeEEEEcCC---CcEEEEeecCCceEEEEeeecCCceEEEee-c
Q psy4754 127 RLLFAGYNDYTINVWDSLKCCRVN----HLMGHENRVSCLQVSPD---GTAFSSGSWDTTLRCRLFDLRADKEVACYK-K 198 (304)
Q Consensus 127 ~~l~sg~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~v~~sp~---~~~las~s~d~~i~i~~~d~~~~~~~~~~~-~ 198 (304)
++|++|+.++.|++|++.+..... .+.+|...|.+++|+|+ +++|++++.|++| ++||+++++.+..+. .
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i--~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHI--KISHYPQCFIVDKWLFG 239 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCE--EEEEESCTTCEEEECCC
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcE--EEEECCCCceeeeeecC
Confidence 999999999999999987765443 67889999999999999 9999999999996 689999888776633 3
Q ss_pred CceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc-------------------------ccceEEEEEc
Q psy4754 199 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-------------------------ENRVSCLQVS 253 (304)
Q Consensus 199 ~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-------------------------~~~i~~l~~s 253 (304)
+. ..+.+++|+ ++++|++|+.|++|++||+.+++.+..+..+ ...|.+++|+
T Consensus 240 h~--~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 240 HK--HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp CS--SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred CC--CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 32 467999999 9999999999999999999999888877633 3579999999
Q ss_pred cCCCEEEEee-cCCeeeeccc
Q psy4754 254 PDGTAFSSGS-WDTTLRDEES 273 (304)
Q Consensus 254 p~g~~lasgs-~D~~i~~~~~ 273 (304)
|++++|++++ .|+.|++|+.
T Consensus 317 ~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 317 KNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSSSEEEEEETTCSEEEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEe
Confidence 9999999999 8999999998
No 104
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.4e-34 Score=247.88 Aligned_cols=225 Identities=16% Similarity=0.232 Sum_probs=175.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcC--CCCEEEEeeCCCcEEEEeCCCc--eeeeeecCCcCcEEEEEEC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKC--CRVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~--~g~~l~tg~~dg~v~iwd~~~~--~~~~~~~~h~~~V~~l~~s 77 (304)
.|++|||||+.+++.........|...|.+++|++ ++.+|++|+.|++|++||+.++ +....+.+|...|.+++|+
T Consensus 33 ~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~ 112 (316)
T 3bg1_A 33 SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA 112 (316)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEEC
T ss_pred CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEEC
Confidence 47899999999875433333344556699999986 4899999999999999999876 3566778999999999999
Q ss_pred CC--CCeEEEEeCCCceEEEEeeeCCCeeEeEE-eccceeeceeeeEEcCC-----------------CCEEEEEeCCCe
Q psy4754 78 PD--GTAFSSGSWDTTLRCRLFDLRADKEVACY-KKDSILFGATSVDFSVS-----------------GRLLFAGYNDYT 137 (304)
Q Consensus 78 ~d--~~~l~sgs~D~~i~~~~wd~~~~~~~~~~-~~~~~~~~~~~~~~s~~-----------------~~~l~sg~~dg~ 137 (304)
|+ +++|++|+.|+++ ++||+......... ....+...+.++.|+|+ +.+|++|+.|+.
T Consensus 113 p~~~g~~lasgs~D~~i--~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~ 190 (316)
T 3bg1_A 113 PHDYGLILACGSSDGAI--SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL 190 (316)
T ss_dssp CTTTCSCEEEECSSSCE--EEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSB
T ss_pred CCCCCcEEEEEcCCCCE--EEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCe
Confidence 98 7899999999996 78999765322111 11112234677888887 468999999999
Q ss_pred EEEecCCcc---ccceeccCcccceeEEEEcCCC----cEEEEeecCCceEEEEeeecCCc----eEEEeecCceeeeee
Q psy4754 138 INVWDSLKC---CRVNHLMGHENRVSCLQVSPDG----TAFSSGSWDTTLRCRLFDLRADK----EVACYKKDSILFGAT 206 (304)
Q Consensus 138 i~iwd~~~~---~~~~~~~~h~~~v~~v~~sp~~----~~las~s~d~~i~i~~~d~~~~~----~~~~~~~~~~~~~~~ 206 (304)
|++||+.+. ..+..+.+|...|.+++|+|++ +.|++++.|+++ ++|++++.. ....+..+ ...+.
T Consensus 191 v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v--~iw~~~~~~~~~~~~~~~~~~--~~~v~ 266 (316)
T 3bg1_A 191 IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV--FIWTCDDASSNTWSPKLLHKF--NDVVW 266 (316)
T ss_dssp CCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE--EEEECSSTTCCCCBCCEEEEC--SSCEE
T ss_pred EEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE--EEEEccCccccchhhhhhhcC--CCcEE
Confidence 999998644 3566788999999999999986 789999999996 689987621 11112222 23578
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 207 SVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 207 ~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
+++|+|++++|++++.|++|++|+..
T Consensus 267 ~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 267 HVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99999999999999999999999864
No 105
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.9e-33 Score=247.17 Aligned_cols=260 Identities=19% Similarity=0.227 Sum_probs=208.4
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC-CcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
+.+++|++ ..+++++.||.|++||..+++....+.. |...|.+++|+|++++|++|+.|+.+ ++||+.+.+.+..
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i--~iwd~~~~~~~~~ 171 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLV--DIYDVESQTKLRT 171 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCE--EEEETTTCCEEEE
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeE--EEEECcCCeEEEE
Confidence 45577765 4477888999999999999987776655 88999999999999999999999995 7899998888877
Q ss_pred EeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCc-cccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEee
Q psy4754 108 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d 186 (304)
+..+. ..+.++.| ++.++++|+.|+.|++||++. ...+..+.+|...|.+++|+|+++.|++++.|+.+ ++||
T Consensus 172 ~~~~~--~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v--~iwd 245 (401)
T 4aez_A 172 MAGHQ--ARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV--QIWD 245 (401)
T ss_dssp ECCCS--SCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE--EEEE
T ss_pred ecCCC--CceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE--EEcc
Confidence 76543 24667777 567999999999999999984 45567788999999999999999999999999996 6999
Q ss_pred ecCCceEEEeecCceeeeeeEEEEcCCCC-EEEEEe--CCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEE--
Q psy4754 187 LRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGY--NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS-- 261 (304)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~sg~--~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~las-- 261 (304)
+++.+.+..+..+. ..+.+++|+|++. ++++|+ .|+.|++||+.+++.+..+. |...|.+++|+|++..|++
T Consensus 246 ~~~~~~~~~~~~~~--~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 246 ARSSIPKFTKTNHN--AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp TTCSSEEEEECCCS--SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE
T ss_pred CCCCCccEEecCCc--ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEe
Confidence 99888777665443 4578999999765 566654 69999999999998888775 6679999999999999999
Q ss_pred eecCCeeeeccccccchhheeeccccCCce-eEEEEEecCCcc
Q psy4754 262 GSWDTTLRDEESKNRYMQYLLRSRITKPTQ-GLTVYFQDRGRS 303 (304)
Q Consensus 262 gs~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 303 (304)
|+.|+.|++|+...+......+ ...+.. -..+.++|+++.
T Consensus 323 g~~dg~i~v~~~~~~~~~~~~~--~~~h~~~v~~~~~s~dg~~ 363 (401)
T 4aez_A 323 GFPDNNLSIWSYSSSGLTKQVD--IPAHDTRVLYSALSPDGRI 363 (401)
T ss_dssp CTTTCEEEEEEEETTEEEEEEE--EECCSSCCCEEEECTTSSE
T ss_pred ecCCCcEEEEecCCccceeEEE--ecCCCCCEEEEEECCCCCE
Confidence 5589999999987643322221 122222 244666776653
No 106
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=7.9e-34 Score=252.89 Aligned_cols=229 Identities=14% Similarity=0.062 Sum_probs=170.2
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCcee-----eeeecCCcCcEEEEEECC--------CCCeEEEEeCCCceEEEEeee
Q psy4754 33 DFSVSGRLLFAGYNDYTINVWDSLKCCR-----VNHLMGHENRVSCLQVSP--------DGTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 33 ~~~~~g~~l~tg~~dg~v~iwd~~~~~~-----~~~~~~h~~~V~~l~~s~--------d~~~l~sgs~D~~i~~~~wd~ 99 (304)
.+++++.+|++|+.|++|+|||..+++. +..+.+|.++|.+++|+| |+++|+|||.|+++ ++||+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv--~~Wd~ 173 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL--IIWRL 173 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE--EEEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE--EEEEC
Confidence 3445667899999999999999887653 345789999999999997 88999999999995 79999
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCcccccee-------------------------cc
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNH-------------------------LM 153 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~-------------------------~~ 153 (304)
.+..++.....+. ..+.+++|+|++. +|++|+.|++|++||+++.+.... ..
T Consensus 174 ~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 174 TDEGPILAGYPLS--SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp ETTEEEEEEEECS--SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred CCCceeeeecCCC--CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 8776665444332 2467899999875 799999999999999876543221 24
Q ss_pred CcccceeEEEEc-CCCcEEEEeecCCceEEEEeeecCCceEEEeecCcee----------------eeeeEEEEcC--CC
Q psy4754 154 GHENRVSCLQVS-PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL----------------FGATSVDFSV--SG 214 (304)
Q Consensus 154 ~h~~~v~~v~~s-p~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~----------------~~~~~~~~s~--~g 214 (304)
+|...+.++.|+ ||++.+++++.|+++ ++||+...+....+..+... .......++| ++
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i--~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCKSGAW--LRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD 329 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECTTSEE--EEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred cccccceeeeeecCCCCEEEEEeCCCCE--EEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCC
Confidence 678889999986 899999999999996 68998776543333211100 0011223443 34
Q ss_pred CEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCe
Q psy4754 215 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 215 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
.++++|+.|++|++||..+++.+..+.+|..+|.+|+|+|||++||+++.|+.
T Consensus 330 ~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 330 YFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp EEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 56777889999999999999888888899999999999999999999997765
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=8.9e-33 Score=249.03 Aligned_cols=232 Identities=24% Similarity=0.416 Sum_probs=201.4
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeE
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV 105 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~ 105 (304)
...|.+++| +++++++|+.||+|++||..+++.+..+.+|.+.|.+++| ++++|++|+.|++| ++||+.+++.+
T Consensus 133 ~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i--~vwd~~~~~~~ 206 (435)
T 1p22_A 133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTV--RVWDVNTGEML 206 (435)
T ss_dssp CCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCE--EEEESSSCCEE
T ss_pred CCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeE--EEEECCCCcEE
Confidence 344777776 7899999999999999999999999999999999999998 68899999999996 78999988887
Q ss_pred eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc---eeccCcccceeEEEEcCCCcEEEEeecCCceEE
Q psy4754 106 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV---NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i 182 (304)
..+..+. ..+.++.|+ +..+++|+.|+.|++||+.+.... ..+.+|...|.+++| +++.+++|+.|+.+
T Consensus 207 ~~~~~h~--~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i-- 278 (435)
T 1p22_A 207 NTLIHHC--EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTI-- 278 (435)
T ss_dssp EEECCCC--SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEE--
T ss_pred EEEcCCC--CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeE--
Confidence 7776543 246777776 469999999999999999877655 567899999999999 67899999999996
Q ss_pred EEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEe
Q psy4754 183 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 183 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasg 262 (304)
++||+++++.+..+..+. ..+.++++ +++++++|+.|+.|++||+.+++.+..+.+|...|.+++| ++.+|++|
T Consensus 279 ~vwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 279 KVWNTSTCEFVRTLNGHK--RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp EEEETTTCCEEEEEECCS--SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred EEEECCcCcEEEEEcCCC--CcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 689999998888776554 34677777 5789999999999999999999999999999999999999 78999999
Q ss_pred ecCCeeeeccccccc
Q psy4754 263 SWDTTLRDEESKNRY 277 (304)
Q Consensus 263 s~D~~i~~~~~~~~~ 277 (304)
+.|++|++|+...+.
T Consensus 353 ~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 353 AYDGKIKVWDLVAAL 367 (435)
T ss_dssp ETTSCEEEEEHHHHT
T ss_pred eCCCcEEEEECCCCC
Confidence 999999999986544
No 108
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=255.55 Aligned_cols=233 Identities=9% Similarity=0.024 Sum_probs=182.4
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEE-----------------E----------EeCCCceeeeeec-CCcCcEEEEEEC
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTIN-----------------V----------WDSLKCCRVNHLM-GHENRVSCLQVS 77 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~-----------------i----------wd~~~~~~~~~~~-~h~~~V~~l~~s 77 (304)
...|.+++|+|||+++||++.|++|+ + |++.+++....+. .|.+.|.+++|+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawS 94 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPS 94 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEEC
T ss_pred hccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEEC
Confidence 45699999999999999999999995 1 1122222112222 567899999999
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccce---eeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc------
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI---LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR------ 148 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~------ 148 (304)
|||+.|++++.|+++ ++||... .+..+. +.. ...+.+++|||||++||+|+.||+|++||+.++..
T Consensus 95 PdG~~LAs~s~dg~V--~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i 169 (588)
T 2j04_A 95 PIDDWMAVLSNNGNV--SVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFY 169 (588)
T ss_dssp SSSSCEEEEETTSCE--EEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCE
T ss_pred CCCCEEEEEeCCCcE--EEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccce
Confidence 999999999999995 7899543 444333 221 12477999999999999999999999999887642
Q ss_pred -ceec----cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce---EEEee-cCceeeeeeEEEEcCCCCEEEE
Q psy4754 149 -VNHL----MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE---VACYK-KDSILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 149 -~~~~----~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~---~~~~~-~~~~~~~~~~~~~s~~g~~l~s 219 (304)
+.++ .+|...|.+++|+||| +++++.|+++ ++||+.+.+. ...++ .+. ..|.+++|+ |++||+
T Consensus 170 ~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tV--rlWd~~~~~~~~~~~tL~~~h~--~~V~svaFs--g~~LAS 241 (588)
T 2j04_A 170 FESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSV--FSMTVSASSHQPVSRMIQNASR--RKITDLKIV--DYKVVL 241 (588)
T ss_dssp EEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCE--EEECCCSSSSCCCEEEEECCCS--SCCCCEEEE--TTEEEE
T ss_pred eeeeeecccccccccEEEEEEcCCc--EEEEeCCCeE--EEEECCCCccccceeeeccccc--CcEEEEEEE--CCEEEE
Confidence 3454 6788999999999999 7888889996 6899987663 23342 222 357899999 689999
Q ss_pred EeCCCcEEEEeCCCceeeEEeeccccceEEEEE--ccCCCEEEEeecCCeeeeccc
Q psy4754 220 GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV--SPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 220 g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~--sp~g~~lasgs~D~~i~~~~~ 273 (304)
++ +++|++||..+++......+|.+.|..++| +||+..|+++++|++ |+|..
T Consensus 242 a~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 242 TC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred Ee-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 87 699999999887764434489999999999 999999999999999 88865
No 109
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-32 Score=265.46 Aligned_cols=239 Identities=11% Similarity=0.050 Sum_probs=196.3
Q ss_pred cccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 25 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 25 ~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
+...|++++|+|++++||+|+.||+|+||+..+.+....+ .|..+|.+++|+| +++|++++.|++| ++||+.+++.
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v--~lWd~~~~~~ 91 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTV--YVLSLYSQKV 91 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEE--EEEETTTCSE
T ss_pred CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeE--EEEECCCCcE
Confidence 3455999999999999999999999999999887765544 4788999999999 8899999999995 7899998888
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc-----------eeccCcccceeEEEEcCC-CcEEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-----------NHLMGHENRVSCLQVSPD-GTAFS 172 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~-----------~~~~~h~~~v~~v~~sp~-~~~la 172 (304)
+..+... ..+.+++|+|+++++++|+.||.|++||+.+.... ..+.+|..+|.+++|+|+ +..++
T Consensus 92 ~~~~~~~---~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 92 LTTVFVP---GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp EEEEECS---SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred EEEEcCC---CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 7777533 24789999999999999999999999999876542 345789999999999996 47899
Q ss_pred EeecCCceEEEEeeecCCceEEEeecC----------------ceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 173 SGSWDTTLRCRLFDLRADKEVACYKKD----------------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 173 s~s~d~~i~i~~~d~~~~~~~~~~~~~----------------~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
+|+.|++ + +||+++.+.+..+..+ .+...+++++|+|+|++|++|+.|++|++||+.++++
T Consensus 169 ~g~~dg~--v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 169 ISYEYVT--L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EECSSCE--E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred EEeCCCc--E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 9999988 5 8999998877766543 0113589999999999999999999999999988876
Q ss_pred eEE--e---ec-------------cccceEEEEEc----cCC-CEEEEeecCC-----eeeeccc
Q psy4754 237 VNH--L---MG-------------HENRVSCLQVS----PDG-TAFSSGSWDT-----TLRDEES 273 (304)
Q Consensus 237 ~~~--~---~~-------------h~~~i~~l~~s----p~g-~~lasgs~D~-----~i~~~~~ 273 (304)
+.. + .+ |.++|++++|+ |++ ..|++|+.|. .+++|+.
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 643 2 12 35589999995 443 5788888773 6778774
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6e-32 Score=237.57 Aligned_cols=247 Identities=13% Similarity=0.060 Sum_probs=181.9
Q ss_pred EeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeE-EEE
Q psy4754 8 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF-SSG 86 (304)
Q Consensus 8 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l-~sg 86 (304)
||++++.+.+.. ...+...|.+++|+|||++|++|+.+| +++||..+++...... ...+..+++.++++.+ ++|
T Consensus 3 i~s~~~~~~~~~--~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 77 (355)
T 3vu4_A 3 LGSMITRNPIVP--ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVT 77 (355)
T ss_dssp ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEEC
T ss_pred cccccccCCccc--cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEE
Confidence 566666654332 234455699999999999999998775 7899998876654432 2357788999988877 567
Q ss_pred eCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc-ccceeccCcccceeEEEEc
Q psy4754 87 SWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVS 165 (304)
Q Consensus 87 s~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~s 165 (304)
+.|++ +++||..+++.+..+.... .+.++.++++. ++.+ .++.|++||+.+. +.+.++.. +...++++
T Consensus 78 ~~d~~--v~iWd~~~~~~~~~~~~~~---~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s 146 (355)
T 3vu4_A 78 GVKEV--VHIWDDVKKQDVSRIKVDA---PVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFS 146 (355)
T ss_dssp SSTTE--EEEEETTTTEEEEEEECSS---CEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEE
T ss_pred CCccE--EEEEECCCCcEEEEEECCC---ceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEE
Confidence 77887 4799999988887776433 46778887753 4444 3789999999877 55555544 44456677
Q ss_pred CCCcEEEE--eecCCceEEEEeeecCCc----------------eEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCc-E
Q psy4754 166 PDGTAFSS--GSWDTTLRCRLFDLRADK----------------EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT-I 226 (304)
Q Consensus 166 p~~~~las--~s~d~~i~i~~~d~~~~~----------------~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~-i 226 (304)
| ..++. |+.|+.+ ++||+++.+ .+..+..+. ..+++++|+|+|++|++|+.|++ |
T Consensus 147 ~--~~la~~sg~~~g~v--~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~--~~v~~~~~s~~g~~l~s~s~d~~~v 220 (355)
T 3vu4_A 147 N--GLLVYSNEFNLGQI--HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT--NPIKMVRLNRKSDMVATCSQDGTII 220 (355)
T ss_dssp T--TEEEEEESSCTTCE--EEEECCC------------------CCEEECCCS--SCEEEEEECTTSSEEEEEETTCSEE
T ss_pred c--cEEEEeCCCcCcEE--EEEECCCCCccccccccccccccCcccEEEEccC--CceEEEEECCCCCEEEEEeCCCCEE
Confidence 7 45555 6788885 689998754 134444443 46899999999999999999998 9
Q ss_pred EEEeCCCceeeEEee-c-cccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 227 NVWDSLKCCRVNHLM-G-HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 227 ~iwd~~~~~~~~~~~-~-h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
++||+.+++.+.++. + |.++|.+++|+|+|++|++++.|++|++|++..+
T Consensus 221 ~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 221 RVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 999999999999998 6 9999999999999999999999999999998654
No 111
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-32 Score=238.39 Aligned_cols=238 Identities=17% Similarity=0.191 Sum_probs=185.6
Q ss_pred eeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCC--CeeEeEEeccceeeceeeeEEcCC--CCEEEEEeC
Q psy4754 59 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA--DKEVACYKKDSILFGATSVDFSVS--GRLLFAGYN 134 (304)
Q Consensus 59 ~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~--~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~sg~~ 134 (304)
+.+..+.+|.++|.+++|+|++++|++|+.|++| ++||+.. ...+..+..+ ...+.+++|+++ +.+|++++.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i--~iw~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTI--KIFEVEGETHKLIDTLTGH--EGPVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCE--EEEEEETTEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEET
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcE--EEEecCCCcceeeeEecCC--CCcEEEEEeCCCCCCCEEEEecc
Confidence 4566788999999999999999999999999996 6899873 3444444433 235788999877 899999999
Q ss_pred CCeEEEecCCccc--cceeccCcccceeEEEEcCC--CcEEEEeecCCceEEEEeeecCCceE--EEeecCceeeeeeEE
Q psy4754 135 DYTINVWDSLKCC--RVNHLMGHENRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDLRADKEV--ACYKKDSILFGATSV 208 (304)
Q Consensus 135 dg~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~--~~~las~s~d~~i~i~~~d~~~~~~~--~~~~~~~~~~~~~~~ 208 (304)
|+.|++||+.+.+ .+..+.+|...|.+++|+|+ ++.+++++.|+.+ ++||++..... ..+..+ ...+.++
T Consensus 78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i--~v~d~~~~~~~~~~~~~~~--~~~v~~~ 153 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV--SVVEFKENGTTSPIIIDAH--AIGVNSA 153 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEE--EEEECCTTSCCCEEEEECC--TTCEEEE
T ss_pred CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcE--EEEecCCCCceeeEEecCC--CCceEEE
Confidence 9999999988775 66677889999999999999 9999999999996 68999876432 223232 2467899
Q ss_pred EEcC-------------CCCEEEEEeCCCcEEEEeCCCce----eeEEeeccccceEEEEEccC---CCEEEEeecCCee
Q psy4754 209 DFSV-------------SGRLLFAGYNDYTINVWDSLKCC----RVNHLMGHENRVSCLQVSPD---GTAFSSGSWDTTL 268 (304)
Q Consensus 209 ~~s~-------------~g~~l~sg~~d~~i~iwd~~~~~----~~~~~~~h~~~i~~l~~sp~---g~~lasgs~D~~i 268 (304)
+|+| ++.++++|+.|+.|++||+.++. .+..+.+|..+|.+++|+|+ +.+|++++.|+.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i 233 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence 9999 69999999999999999986543 45678889999999999999 8999999999999
Q ss_pred eeccccccchhheee-ccccCCce-eEEEEEecCCccC
Q psy4754 269 RDEESKNRYMQYLLR-SRITKPTQ-GLTVYFQDRGRSI 304 (304)
Q Consensus 269 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 304 (304)
++|+...+....... ........ -..+.++|+++.|
T Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 271 (379)
T 3jrp_A 234 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 271 (379)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred EEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEE
Confidence 999987653221111 11111222 3567788877643
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=5.7e-31 Score=236.32 Aligned_cols=260 Identities=13% Similarity=0.129 Sum_probs=213.6
Q ss_pred CceeEEeeccccceEeeeec---cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCC
Q psy4754 3 KNHCRLFDLRADKEVACYKK---DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~---~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 79 (304)
+++|++||+.+++....... ..+...+.+++|++++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|+
T Consensus 143 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (433)
T 3bws_A 143 DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPI 222 (433)
T ss_dssp SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETT
T ss_pred CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCC
Confidence 56899999999987654332 133345899999999999999999999999999999888888889999999999999
Q ss_pred CCeEE-EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEe--------CCCeEEEecCCccccce
Q psy4754 80 GTAFS-SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY--------NDYTINVWDSLKCCRVN 150 (304)
Q Consensus 80 ~~~l~-sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~--------~dg~i~iwd~~~~~~~~ 150 (304)
++.++ +++.|+.+ ++||+.+.+.+..+.... .+..++|+|+++++++++ .|+.|++||+.+++.+.
T Consensus 223 ~~~l~~~~~~~~~i--~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~ 297 (433)
T 3bws_A 223 RDLVYCSNWISEDI--SVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID 297 (433)
T ss_dssp TTEEEEEETTTTEE--EEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE
T ss_pred CCEEEEEecCCCcE--EEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe
Confidence 99875 55578885 789999887776655432 357899999999999887 58899999998776554
Q ss_pred eccCcccceeEEEEcCCCcE-EEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeC-------
Q psy4754 151 HLMGHENRVSCLQVSPDGTA-FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN------- 222 (304)
Q Consensus 151 ~~~~h~~~v~~v~~sp~~~~-las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~------- 222 (304)
. ..|...+.+++|+|+++. +++++.|+.+ ++||+.+++.+..+... ..+.+++|+|+|+++++++.
T Consensus 298 ~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v--~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~~ 371 (433)
T 3bws_A 298 T-IGPPGNKRHIVSGNTENKIYVSDMCCSKI--EVYDLKEKKVQKSIPVF---DKPNTIALSPDGKYLYVSCRGPNHPTE 371 (433)
T ss_dssp E-EEEEECEEEEEECSSTTEEEEEETTTTEE--EEEETTTTEEEEEEECS---SSEEEEEECTTSSEEEEEECCCCCTTT
T ss_pred e-ccCCCCcceEEECCCCCEEEEEecCCCEE--EEEECCCCcEEEEecCC---CCCCeEEEcCCCCEEEEEecCCCcccc
Confidence 4 456678999999999964 5677888885 68999988777666533 34689999999999888876
Q ss_pred --------CCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeec-CCeeeecccc
Q psy4754 223 --------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRDEESK 274 (304)
Q Consensus 223 --------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~-D~~i~~~~~~ 274 (304)
||.|++||..+++.+..+.. ...+.+++|+|+|++|++++. |++|++|+.+
T Consensus 372 ~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 372 GYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 56999999999988888776 457899999999999988775 9999999864
No 113
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.8e-31 Score=237.42 Aligned_cols=259 Identities=19% Similarity=0.254 Sum_probs=204.7
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec--CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
++.|+|+++ .+||+| .|++|+|||..+++..+.+. +|.+.|++|+|+|+|++|++|+.|++| ++||+.+++.+.
T Consensus 108 ~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v--~iWd~~~~~~~~ 183 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV--QLWDVQQQKRLR 183 (420)
T ss_dssp CBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCE--EEEETTTTEEEE
T ss_pred ceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeE--EEEEcCCCcEEE
Confidence 577999976 477766 59999999999998776654 678899999999999999999999995 789999998888
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc-cceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEe
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 185 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~ 185 (304)
.+..+.. .+.+ ++.++..+++|+.|+.+++||..... .+..+.+|...+..+.++|+++.+++++.|+.+ ++|
T Consensus 184 ~~~~h~~--~v~~--~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v--~i~ 257 (420)
T 4gga_A 184 NMTSHSA--RVGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV--NVW 257 (420)
T ss_dssp EECCCSS--CEEE--EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE--EEE
T ss_pred EEeCCCC--ceEE--EeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccc--eEE
Confidence 7766543 2334 45567899999999999999987643 456678999999999999999999999999996 689
Q ss_pred eecCCce----EEEeecCceeeeeeEEEEcCCCC-EEEE--EeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCE
Q psy4754 186 DLRADKE----VACYKKDSILFGATSVDFSVSGR-LLFA--GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 258 (304)
Q Consensus 186 d~~~~~~----~~~~~~~~~~~~~~~~~~s~~g~-~l~s--g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~ 258 (304)
+...++. +.....+ ...+.+++|+|.+. ++++ |+.|++|++||+.++..+..+..| ..+.++.|+|++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~--~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 258 PSAPGEGGWVPLQTFTQH--QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKE 334 (420)
T ss_dssp ESSCCSSCSCCSEEECCC--SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTE
T ss_pred eeccccccceeeeeeccc--CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCe
Confidence 9876542 2222222 24578999999765 5554 457999999999999988888755 57899999999999
Q ss_pred EEEee--cCCeeeeccccccchhheeeccccCCcee-EEEEEecCCccC
Q psy4754 259 FSSGS--WDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGRSI 304 (304)
Q Consensus 259 lasgs--~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 304 (304)
+++++ .|++|++|++..+.+...+ ..+... ..|.|+|+|+.|
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~~v~~l----~gH~~~V~~l~~spdg~~l 379 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMAKVAEL----KGHTSRVLSLTMSPDGATV 379 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCE
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEE
Confidence 88765 7999999998765543333 334444 457889988754
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=239.57 Aligned_cols=232 Identities=11% Similarity=0.014 Sum_probs=182.4
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC---------CCe
Q psy4754 33 DFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR---------ADK 103 (304)
Q Consensus 33 ~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~---------~~~ 103 (304)
.+.+++.++++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|+++ ++|+.. ..+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i--~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRL--LLLYPGNQITILDSKTNK 115 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEE--EEEETTTEEEEEETTTCC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeE--EEEEccCceEEeecCCcc
Confidence 344678899999999999999999988877765 567888899987 9999999996 567654 333
Q ss_pred eEeEEeccceeeceeeeEEcC--CCCEEEEEeCCCeEEEecCCccccceec-cCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 104 EVACYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
.+...... ....+.++.|+| +++++++++.|+.|++||+.+++.+... ..|...|.+++|+|+++++++|+.|+.|
T Consensus 116 ~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i 194 (343)
T 3lrv_A 116 VLREIEVD-SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGIL 194 (343)
T ss_dssp EEEEEECC-CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCE
T ss_pred eeEEeecC-CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEE
Confidence 33333211 112478899999 9999999999999999999988775554 3455689999999999999999999996
Q ss_pred EEEEeeecCCceE-EEeec-CceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec---cccceE--EEEEc
Q psy4754 181 RCRLFDLRADKEV-ACYKK-DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG---HENRVS--CLQVS 253 (304)
Q Consensus 181 ~i~~~d~~~~~~~-~~~~~-~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~---h~~~i~--~l~~s 253 (304)
++||+++.+.. ..+.. +. ..+++++|+|+|.+|++++++ .|++||+.+...+..+.. |...+. +++|+
T Consensus 195 --~iwd~~~~~~~~~~~~~~h~--~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (343)
T 3lrv_A 195 --DVYNLSSPDQASSRFPVDEE--AKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID 269 (343)
T ss_dssp --EEEESSCTTSCCEECCCCTT--SCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEEC
T ss_pred --EEEECCCCCCCccEEeccCC--CCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecccccccccccceEEEEC
Confidence 69999998876 56655 33 468999999999999999955 999999988766554443 444444 69999
Q ss_pred cCCCEEEEeec-CCeeeeccccccc
Q psy4754 254 PDGTAFSSGSW-DTTLRDEESKNRY 277 (304)
Q Consensus 254 p~g~~lasgs~-D~~i~~~~~~~~~ 277 (304)
|+|++|++++. |+.|++|++....
T Consensus 270 ~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 270 DSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTT
T ss_pred CCCCEEEEecCCCCcEEEEEEcccc
Confidence 99999999998 9999999875543
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.7e-31 Score=232.54 Aligned_cols=254 Identities=13% Similarity=0.142 Sum_probs=195.0
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
++.+++||+.+.++...... .++..+++.++++.+ ++|+.|++|++||..+++.+..+. |..+|.+++|+++.
T Consensus 39 ~~~~~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~- 112 (355)
T 3vu4_A 39 LKSFEIYNVHPVAHIMSQEM----RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF- 112 (355)
T ss_dssp SSEEEEEEETTEEEEEEEEC----SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-
T ss_pred CCEEEEEecCCcceeeeeec----CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-
Confidence 56689999998876544321 257888999888876 578889999999999999888776 67799999999764
Q ss_pred eEEEEeCCCceEEEEeeeCCC-eeEeEEeccceeeceeeeEEcCCCCEEEE--EeCCCeEEEecCCccc-----------
Q psy4754 82 AFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGRLLFA--GYNDYTINVWDSLKCC----------- 147 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~s--g~~dg~i~iwd~~~~~----------- 147 (304)
++.+ .|+. +++||+... +.+..+.. ....+.+++ .+++. |+.+|.|++||+.+..
T Consensus 113 -~~~~-~~~~--i~i~d~~~~~~~~~~~~~-----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~ 181 (355)
T 3vu4_A 113 -IVVS-YGDV--ISVFKFGNPWKRITDDIR-----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ 181 (355)
T ss_dssp -EEEE-ETTE--EEEEESSTTCCBSSCCEE-----EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------
T ss_pred -EEEE-EcCE--EEEEECCCCceeeEEecc-----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccc
Confidence 4444 3666 479999877 55544333 112345666 55555 5889999999998754
Q ss_pred -----cceeccCcccceeEEEEcCCCcEEEEeecCCc-eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe
Q psy4754 148 -----RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT-LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 148 -----~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~-i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~ 221 (304)
.+..+.+|..+|.+++|+|++++|++|+.|++ + ++||+++++.+..+....+...+.+++|+|+|++|++++
T Consensus 182 ~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v--~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII--RVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp -----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE--EEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE--EEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence 16678899999999999999999999999998 6 699999999888886321224689999999999999999
Q ss_pred CCCcEEEEeCCCcee--eEEee---------------------ccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 222 NDYTINVWDSLKCCR--VNHLM---------------------GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 222 ~d~~i~iwd~~~~~~--~~~~~---------------------~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
.|++|++||+.++.. ...+. .+..+...++|+|||+.|++++.|+.+++|+...
T Consensus 260 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 260 DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 999999999865421 11111 1122347799999999999999999999998754
No 116
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.9e-31 Score=225.68 Aligned_cols=261 Identities=18% Similarity=0.204 Sum_probs=203.5
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec--CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
.++|+||+++ +||+| .|++|+|||+.+++.++.+. +|...|.+++|+|++++|++|+.|+++ ++||+.+++.+.
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v--~iw~~~~~~~~~ 103 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV--QLWDVQQQKRLR 103 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEE--EEEETTTTEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcE--EEeecCCceeEE
Confidence 5789999886 66665 59999999999998877664 678899999999999999999999995 789999999888
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcc-ccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEe
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC-CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 185 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~ 185 (304)
.++.+.. ....+++++..+++++.++.+++|+.... ..+..+.+|...+..+.++++++.+++++.|+++ ++|
T Consensus 104 ~~~~h~~----~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i--~iw 177 (318)
T 4ggc_A 104 NMTSHSA----RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV--NVW 177 (318)
T ss_dssp EEECCSS----CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE--EEE
T ss_pred EecCccc----eEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcce--eEE
Confidence 7766543 23446677889999999999999997764 3456678999999999999999999999999996 689
Q ss_pred eecCCceEEE--eecCceeeeeeEEEEcCCCCEE---EEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEE
Q psy4754 186 DLRADKEVAC--YKKDSILFGATSVDFSVSGRLL---FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS 260 (304)
Q Consensus 186 d~~~~~~~~~--~~~~~~~~~~~~~~~s~~g~~l---~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~la 260 (304)
|+++++.... .........+..++++|++..+ ++++.+++|++||.......... .|...+..+.|+|++..++
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 256 (318)
T 4ggc_A 178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELI 256 (318)
T ss_dssp ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEE
T ss_pred ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceE
Confidence 9987653211 1111122356888899887643 45678899999999887665544 5778899999999999887
Q ss_pred Eee--cCCeeeeccccccchhheeeccccCCcee-EEEEEecCCccC
Q psy4754 261 SGS--WDTTLRDEESKNRYMQYLLRSRITKPTQG-LTVYFQDRGRSI 304 (304)
Q Consensus 261 sgs--~D~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 304 (304)
+++ .|++|++|+.+.+.+...+ ..+... ..+.|+|+|+.|
T Consensus 257 ~~sg~~d~~i~iwd~~~~~~~~~l----~gH~~~V~~l~~spdg~~l 299 (318)
T 4ggc_A 257 SGHGFAQNQLVIWKYPTMAKVAEL----KGHTSRVLSLTMSPDGATV 299 (318)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCE
T ss_pred EEEEcCCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEE
Confidence 655 8999999998776544333 234444 457888887654
No 117
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.5e-31 Score=230.12 Aligned_cols=231 Identities=16% Similarity=0.240 Sum_probs=183.3
Q ss_pred CCceeEEeeccccceEeee--eccccccceeEEEEcC--CCCEEEEeeCCCcEEEEeCCCc---------eeeeeecCCc
Q psy4754 2 GKNHCRLFDLRADKEVACY--KKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKC---------CRVNHLMGHE 68 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~--~~~~~~~~i~~~~~~~--~g~~l~tg~~dg~v~iwd~~~~---------~~~~~~~~h~ 68 (304)
.|++|++||+.++...... ....+...|++++|+| ++.+|++|+.||+|++||+.++ +.+..+.+|.
T Consensus 31 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 110 (351)
T 3f3f_A 31 SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK 110 (351)
T ss_dssp TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS
T ss_pred CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC
Confidence 3789999999987432111 2223455699999999 6999999999999999999876 5577788999
Q ss_pred CcEEEEEECCC--CCeEEEEeCCCceEEEEeeeCCCeeEeEEec-----------cceeeceeeeEEcCC---CCEEEEE
Q psy4754 69 NRVSCLQVSPD--GTAFSSGSWDTTLRCRLFDLRADKEVACYKK-----------DSILFGATSVDFSVS---GRLLFAG 132 (304)
Q Consensus 69 ~~V~~l~~s~d--~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~-----------~~~~~~~~~~~~s~~---~~~l~sg 132 (304)
..|.+++|+|+ +++|++++.|+.+ ++||+.+.+.+..+.. ......+.++.|+|+ +.+++++
T Consensus 111 ~~v~~~~~~~~~~~~~l~~~~~dg~v--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 188 (351)
T 3f3f_A 111 GSLYSVKFAPAHLGLKLACLGNDGIL--RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS 188 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTCEE--EEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE
T ss_pred CceeEEEEcCCCCCcEEEEecCCCcE--EEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe
Confidence 99999999999 9999999999995 7899987654432221 112234678899997 8999999
Q ss_pred eCCCeEEEecCCcccc--ceeccCcccceeEEEEcCCC----cEEEEeecCCceEEEEeeecCC----------------
Q psy4754 133 YNDYTINVWDSLKCCR--VNHLMGHENRVSCLQVSPDG----TAFSSGSWDTTLRCRLFDLRAD---------------- 190 (304)
Q Consensus 133 ~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~v~~sp~~----~~las~s~d~~i~i~~~d~~~~---------------- 190 (304)
+.++.+.+|+...... +..+.+|...|.+++|+|++ +.|++++.|+.| ++||++..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i--~iwd~~~~~~~~~~~~~~~~~~~~ 266 (351)
T 3f3f_A 189 ALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI--RIFKITEKLSPLASEESLTNSNMF 266 (351)
T ss_dssp ETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE--EEEEEEECC---------------
T ss_pred cCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE--EEEeCCCCcCccccCCcccceecc
Confidence 9999998888766543 66778999999999999998 899999999996 68998764
Q ss_pred ------------------------------ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE
Q psy4754 191 ------------------------------KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 238 (304)
Q Consensus 191 ------------------------------~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~ 238 (304)
+.+..+..+. ..+++++|+|++++|++|+.|+.|++||+.++..+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 267 DNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN--GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp ------------------------CCSEEEEEEEEECTTS--SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred CCCcccccccccccccccceeeeecccccccEEEEEeccc--ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence 2333333332 368999999999999999999999999998765444
No 118
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.8e-30 Score=230.30 Aligned_cols=260 Identities=18% Similarity=0.233 Sum_probs=179.7
Q ss_pred CCceeEEeeccccceEeeeec-----------cccccceeEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeecCCcC
Q psy4754 2 GKNHCRLFDLRADKEVACYKK-----------DSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 69 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~-----------~~~~~~i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~ 69 (304)
.|++|++||+.+++....+.. ..+...|.+++|+| ++.+|++++.||.|++||+.+++....+. +..
T Consensus 64 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~ 142 (408)
T 4a11_B 64 SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEE 142 (408)
T ss_dssp TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCC
Confidence 378899999999865433321 12455699999999 77899999999999999999988877665 778
Q ss_pred cEEEEEECCCC---CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCCc
Q psy4754 70 RVSCLQVSPDG---TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLK 145 (304)
Q Consensus 70 ~V~~l~~s~d~---~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~ 145 (304)
.+.++.+++.+ .++++++.|+.+ ++||+...+.+..+..+. ..+.+++|+|++. .+++++.|+.|++||+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 143 TVYSHHMSPVSTKHCLVAVGTRGPKV--QLCDLKSGSCSHILQGHR--QEILAVSWSPRYDYILATASADSRVKLWDVRR 218 (408)
T ss_dssp CEEEEEECSSCSSCCEEEEEESSSSE--EEEESSSSCCCEEECCCC--SCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred ceeeeEeecCCCCCcEEEEEcCCCeE--EEEeCCCcceeeeecCCC--CcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence 89999999854 499999999995 789999887777665443 3578999999998 588999999999999876
Q ss_pred cc-cceec---------------cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce-----------------
Q psy4754 146 CC-RVNHL---------------MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE----------------- 192 (304)
Q Consensus 146 ~~-~~~~~---------------~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~----------------- 192 (304)
.. .+..+ .+|...|.+++|+|+++.+++++.|+.+ ++||+++.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i--~vwd~~~~~~~~~~~~~~~~~~~~~~~ 296 (408)
T 4a11_B 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM--RLWNSSNGENTLVNYGKVCNNSKKGLK 296 (408)
T ss_dssp SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE--EEEETTTCCBCCCCCCCCCCCCSSCCC
T ss_pred CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE--EEEECCCCccceeccccccccccccce
Confidence 54 22222 5789999999999999999999999996 6899876432
Q ss_pred ------------------------------EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec
Q psy4754 193 ------------------------------VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 242 (304)
Q Consensus 193 ------------------------------~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 242 (304)
+..+..+ ...+.+++|+|++++|++|+.||.|++||+.+.+.+.....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 374 (408)
T 4a11_B 297 FTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH--YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE 374 (408)
T ss_dssp CEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------
T ss_pred eEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC--CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence 2222222 23578999999999999999999999999998877665443
Q ss_pred cccceEEEEEcc-CCCEEEEeecCCeeeeccc
Q psy4754 243 HENRVSCLQVSP-DGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 243 h~~~i~~l~~sp-~g~~lasgs~D~~i~~~~~ 273 (304)
+.. ...+.| +...+.+.+.|+.+++|+.
T Consensus 375 ~~~---~~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 375 TTT---KSQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp --------------------------------
T ss_pred eEe---ccccccccceeecccCccCceeecCC
Confidence 332 233444 4455667778999999964
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-32 Score=245.19 Aligned_cols=259 Identities=11% Similarity=0.073 Sum_probs=187.9
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcC-----cEEEEEECCC
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-----RVSCLQVSPD 79 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~-----~V~~l~~s~d 79 (304)
++++|++.+++....+.. .+...|.+++|+|+|+.||+++.||+|++||... .+..+. |.. .|.+++||||
T Consensus 65 ~~~~~~~~~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPD 140 (588)
T 2j04_A 65 FENKLDFELAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPI 140 (588)
T ss_dssp CCCTTTTSCCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSS
T ss_pred CcceEEEEeCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCC
Confidence 445555554432212221 2244599999999999999999999999999644 555566 665 4999999999
Q ss_pred CCeEEEEeCCCceEEEEeeeCCCee-------EeEEecc--ceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc-
Q psy4754 80 GTAFSSGSWDTTLRCRLFDLRADKE-------VACYKKD--SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV- 149 (304)
Q Consensus 80 ~~~l~sgs~D~~i~~~~wd~~~~~~-------~~~~~~~--~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~- 149 (304)
|++|++|+.|++| ++||+..+.. +..++.+ .+...+.+++|+|++ +++++.|++|++||+.+....
T Consensus 141 G~~LAsgs~DGtV--kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~ 216 (588)
T 2j04_A 141 ESSIVVGNEDGEL--QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP 216 (588)
T ss_dssp SSCEEEEETTSEE--EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC
T ss_pred CCEEEEEcCCCEE--EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc
Confidence 9999999999996 7899987642 3444211 122357899999999 888899999999998776632
Q ss_pred --eec-cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEE--cCCCCEEEEEeCCC
Q psy4754 150 --NHL-MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF--SVSGRLLFAGYNDY 224 (304)
Q Consensus 150 --~~~-~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--s~~g~~l~sg~~d~ 224 (304)
.++ .+|...|.+++|+ ++.+|+++ +++| ++||+.+.+....... +...+..++| +|++..|+++++||
T Consensus 217 ~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tI--kLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d~~~La~a~edG 289 (588)
T 2j04_A 217 VSRMIQNASRRKITDLKIV--DYKVVLTC-PGYV--HKIDLKNYSISSLKTG--SLENFHIIPLNHEKESTILLMSNKTS 289 (588)
T ss_dssp CEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEE--EEEETTTTEEEEEECS--CCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred ceeeecccccCcEEEEEEE--CCEEEEEe-CCeE--EEEECCCCeEEEEEcC--CCceEEEEEeeeCCCCCEEEEEcCCC
Confidence 345 4788999999999 58899887 6775 6999987665322212 2346789999 99999999999999
Q ss_pred cEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCceeEE-EEEecCCcc
Q psy4754 225 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLT-VYFQDRGRS 303 (304)
Q Consensus 225 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 303 (304)
+ ++|... .++|+||+..+++. |+++++|+...+. .+ ..+. .+.+. ++|+|+|+.
T Consensus 290 ~-klw~~d----------------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~----~~~~-~~~I~~va~SPdG~~ 344 (588)
T 2j04_A 290 Y-KVLLED----------------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FN----NYET-TLVIHGISLSPDGYS 344 (588)
T ss_dssp E-EEEESS----------------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SS----SSCC-EEEEEEEEECTTSSE
T ss_pred C-EEEeec----------------cEEECCCceEEEEc--CCEEEEEECCCCc-ee----eecc-ceEEEEEEECCCCCE
Confidence 9 999865 15588888777775 8888888653222 11 1111 33444 777888764
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=9.1e-30 Score=228.46 Aligned_cols=261 Identities=13% Similarity=0.095 Sum_probs=206.9
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee-----eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-----HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~-----~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
.+.+++|+|++.++++++.|++|++||+.+++..+ .+.+|.+.|.+++|+++++++++++.|+.+ ++||+.+.
T Consensus 124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v--~~~d~~~~ 201 (433)
T 3bws_A 124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAV--HVFDLKTL 201 (433)
T ss_dssp CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEE--EEEETTTC
T ss_pred CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEE--EEEECCCc
Confidence 36789999988888999999999999999887776 456899999999999999999999999985 78999988
Q ss_pred eeEeEEeccceeeceeeeEEcCCCCEEEE-EeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-----
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGRLLFA-GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW----- 176 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~----- 176 (304)
+.+..+..+. ..+.+++|+|+++.+++ ++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+++++.
T Consensus 202 ~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~ 278 (433)
T 3bws_A 202 AYKATVDLTG--KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQ 278 (433)
T ss_dssp CEEEEEECSS--SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTT
T ss_pred eEEEEEcCCC--CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCcc
Confidence 7777665432 24678999999998865 457999999999887776666554 56999999999999988884
Q ss_pred ---CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCceeeEEeeccccceEEEEE
Q psy4754 177 ---DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 252 (304)
Q Consensus 177 ---d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 252 (304)
|+.+ ++||+++++.+...... ..+..++|+|+++.+ ++++.++.|++||..+++.+..+. +...+.+++|
T Consensus 279 ~~~dg~i--~~~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~ 352 (433)
T 3bws_A 279 ESGGGRL--GIYSMDKEKLIDTIGPP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL 352 (433)
T ss_dssp CSCCEEE--EEEETTTTEEEEEEEEE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE
T ss_pred ccCCCeE--EEEECCCCcEEeeccCC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE
Confidence 6664 68999888766554322 246789999999754 667889999999999888777765 7788999999
Q ss_pred ccCCCEEEEeec---------------CCeeeeccccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 253 SPDGTAFSSGSW---------------DTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 253 sp~g~~lasgs~---------------D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
+|+|++|++++. |+.|++|+...+........ ......+.++|+|+.
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~ 414 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA----GNQPTGLDVSPDNRY 414 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSCE
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC----CCCCceEEEcCCCCE
Confidence 999999888876 56999999866543333322 223456677777654
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.1e-31 Score=253.19 Aligned_cols=228 Identities=17% Similarity=0.229 Sum_probs=181.5
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCC--CCEEEEeeCCCcEEEEeCCCce--eeeeecCCcCcEEEEEEC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCC--RVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~--g~~l~tg~~dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s 77 (304)
.|++|++||+.++..........+...|++++|+|+ +.+|++|+.||+|++||+.+++ .+..+.+|..+|.+++|+
T Consensus 29 ~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~s 108 (753)
T 3jro_A 29 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA 108 (753)
T ss_dssp TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEEC
Confidence 478999999985433222233445566999999988 9999999999999999998876 677788999999999999
Q ss_pred CC--CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC-------------CCCEEEEEeCCCeEEEec
Q psy4754 78 PD--GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV-------------SGRLLFAGYNDYTINVWD 142 (304)
Q Consensus 78 ~d--~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~-------------~~~~l~sg~~dg~i~iwd 142 (304)
|+ ++.+++|+.|+++ ++||+.................+.++.|+| ++.++++|+.||.|++||
T Consensus 109 p~~~~~~l~sgs~dg~I--~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd 186 (753)
T 3jro_A 109 PHEYGPLLLVASSDGKV--SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186 (753)
T ss_dssp CGGGCSEEEEEETTSEE--EEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEE
T ss_pred CCCCCCEEEEEeCCCcE--EEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEe
Confidence 99 9999999999995 789998763322222222233578899999 588999999999999999
Q ss_pred CCcc----ccceeccCcccceeEEEEcCC---CcEEEEeecCCceEEEEeeecCCceE---EEeecCceeeeeeEEEEcC
Q psy4754 143 SLKC----CRVNHLMGHENRVSCLQVSPD---GTAFSSGSWDTTLRCRLFDLRADKEV---ACYKKDSILFGATSVDFSV 212 (304)
Q Consensus 143 ~~~~----~~~~~~~~h~~~v~~v~~sp~---~~~las~s~d~~i~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~s~ 212 (304)
+++. .....+.+|..+|.+++|+|+ ++.+++++.|+.+ ++||+++.+.. ...........+++++|+|
T Consensus 187 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I--~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp 264 (753)
T 3jro_A 187 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC--IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264 (753)
T ss_dssp EETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE--EEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT
T ss_pred ccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE--EEecCCCCCCcceeEEeccCCCCCceEEEEEcC
Confidence 8765 345567899999999999999 8999999999996 68999876421 1111122234578999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q psy4754 213 SGRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 213 ~g~~l~sg~~d~~i~iwd~~~ 233 (304)
+|+++++|+.||.|++|++..
T Consensus 265 dg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 265 SGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp TTCCEEEECSSSCEECCBCCS
T ss_pred CCCEEEEEcCCCEEEEEecCC
Confidence 999999999999999999763
No 122
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=4.7e-30 Score=224.38 Aligned_cols=241 Identities=16% Similarity=0.221 Sum_probs=186.3
Q ss_pred EeCCCceeeeeecCCcCcEEEEEECCC---CCeEEEEeCCCceEEEEeeeCC-CeeE-eEEeccceeeceeeeEEcCCCC
Q psy4754 53 WDSLKCCRVNHLMGHENRVSCLQVSPD---GTAFSSGSWDTTLRCRLFDLRA-DKEV-ACYKKDSILFGATSVDFSVSGR 127 (304)
Q Consensus 53 wd~~~~~~~~~~~~h~~~V~~l~~s~d---~~~l~sgs~D~~i~~~~wd~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~ 127 (304)
|+....+.+..+.+|.+.|.+++|+|+ |++|++|+.|+.+ ++||+.. ...+ ..+..+ ...+.++.|+|+++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i--~iw~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~ 99 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDV--RCWEVQDSGQTIPKAQQMH--TGPVLDVCWSDDGS 99 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEE--EEEEECTTSCEEEEEEEEC--SSCEEEEEECTTSS
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcE--EEEEcCCCCceeEEEeccc--cCCEEEEEECcCCC
Confidence 445566677778999999999999999 5999999999995 7899986 4433 334433 23578999999999
Q ss_pred EEEEEeCCCeEEEecCCccccceeccCcccceeEEEE--cCCCcEEEEeecCCceEEEEeeecCCceEEEeecCce----
Q psy4754 128 LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV--SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI---- 201 (304)
Q Consensus 128 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~--sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~---- 201 (304)
++++++.|+.|++||+.+.+.+. +.+|...|.+++| +|+++.+++++.|+.+ ++||+++.+.+..+..+..
T Consensus 100 ~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i--~vwd~~~~~~~~~~~~~~~~~~~ 176 (368)
T 3mmy_A 100 KVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL--KFWDTRSSNPMMVLQLPERCYCA 176 (368)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEE--EEECSSCSSCSEEEECSSCEEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcE--EEEECCCCcEEEEEecCCCceEE
Confidence 99999999999999998876554 5779999999999 9999999999999996 6899988766554432210
Q ss_pred -----------------------------------eeeeeEEEEcCCCCE----EEEEeCCCcEEEEeCCCc---eeeEE
Q psy4754 202 -----------------------------------LFGATSVDFSVSGRL----LFAGYNDYTINVWDSLKC---CRVNH 239 (304)
Q Consensus 202 -----------------------------------~~~~~~~~~s~~g~~----l~sg~~d~~i~iwd~~~~---~~~~~ 239 (304)
......+.+.++... +++++.|+.|++||.... ..+..
T Consensus 177 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~ 256 (368)
T 3mmy_A 177 DVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT 256 (368)
T ss_dssp EEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEE
T ss_pred EecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccccee
Confidence 011234444444433 999999999999998876 55677
Q ss_pred eecccc------------ceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCce-eEEEEEecCCccC
Q psy4754 240 LMGHEN------------RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQ-GLTVYFQDRGRSI 304 (304)
Q Consensus 240 ~~~h~~------------~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 304 (304)
+.+|.. +|++++|+|++++|++|+.|+.|++|+...+.....++ .+.. -..+.|+|+|+.|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~g~~l 330 (368)
T 3mmy_A 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE----QLDQPISACCFNHNGNIF 330 (368)
T ss_dssp EECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC----CCSSCEEEEEECTTSSCE
T ss_pred eeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec----CCCCCceEEEECCCCCeE
Confidence 888876 79999999999999999999999999987654333222 2233 3568888888754
No 123
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=4.8e-29 Score=223.61 Aligned_cols=263 Identities=13% Similarity=0.014 Sum_probs=195.4
Q ss_pred eeEEeec--cccceEeeeeccccccceeEEEEcC--------------CCCEEEEeeCC------CcEEEEeCCCceeee
Q psy4754 5 HCRLFDL--RADKEVACYKKDSILFGATSVDFSV--------------SGRLLFAGYND------YTINVWDSLKCCRVN 62 (304)
Q Consensus 5 ~v~~wd~--~~~~~~~~~~~~~~~~~i~~~~~~~--------------~g~~l~tg~~d------g~v~iwd~~~~~~~~ 62 (304)
+|||||+ .+++++.......+...+..+++++ .+..++.++.+ ++|++||.. +...+
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~ 172 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQF 172 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCE
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCE
Confidence 8999999 8888764433333333455555553 14555555443 799999997 44566
Q ss_pred eecCCcCcEEEEEECCCCCeEEEEeCCC-ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEE-EEeCCC--eE
Q psy4754 63 HLMGHENRVSCLQVSPDGTAFSSGSWDT-TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF-AGYNDY--TI 138 (304)
Q Consensus 63 ~~~~h~~~V~~l~~s~d~~~l~sgs~D~-~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-sg~~dg--~i 138 (304)
.+.+|...|.+++|+|||+.|++++.|+ .-.+++||+.+++........ ..+.+++|+|+++.++ +++.++ .|
T Consensus 173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP---RHNGAPAFSPDGSKLAFALSKTGSLNL 249 (415)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS---SCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC---CcccCEEEcCCCCEEEEEEecCCCceE
Confidence 7788999999999999999999999875 122589999887665332221 2356899999999887 566555 49
Q ss_pred EEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEE
Q psy4754 139 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL 217 (304)
Q Consensus 139 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 217 (304)
++||+.+++. ..+..|...+.+++|+||++.+++++. ++...+++||+.+++... +..+. ..+.+++|+|+|++|
T Consensus 250 ~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~~~~--~~~~~~~~spdG~~l 325 (415)
T 2hqs_A 250 YVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEG--SQNQDADVSSDGKFM 325 (415)
T ss_dssp EEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSS--SEEEEEEECTTSSEE
T ss_pred EEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-EecCC--CcccCeEECCCCCEE
Confidence 9999887654 567788889999999999999888775 566667888988766432 22221 245789999999999
Q ss_pred EEEeCC---CcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCC---eeeeccccccc
Q psy4754 218 FAGYND---YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT---TLRDEESKNRY 277 (304)
Q Consensus 218 ~sg~~d---~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~---~i~~~~~~~~~ 277 (304)
++++.+ ..|.+||+.+++. ..+..|. .+.+++|+|||+.|++++.|+ .|.+|++..+.
T Consensus 326 ~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 326 VMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred EEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 987754 5899999988765 4566665 899999999999999999887 78899875443
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=5e-28 Score=214.29 Aligned_cols=248 Identities=15% Similarity=0.197 Sum_probs=197.8
Q ss_pred CEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeE-EEEeCCCceEEEEeeeCCCeeEeEEeccceeece
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGA 117 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~ 117 (304)
.++++++.|++|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+++ ++||+.+++.+..+..+. .+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i--~v~d~~~~~~~~~~~~~~---~v 76 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDV--SIIDTATNNVIATVPAGS---SP 76 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEE--EEEETTTTEEEEEEECSS---SE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeE--EEEECCCCeEEEEEECCC---Cc
Confidence 467899999999999999999888888775 48999999999976 677789985 789999888877766543 46
Q ss_pred eeeEEcCCCCEEEEE-eCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEE-EEeecCCceEEEEeeecCCceEEE
Q psy4754 118 TSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVAC 195 (304)
Q Consensus 118 ~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-as~s~d~~i~i~~~d~~~~~~~~~ 195 (304)
.+++|+|++++++.+ ..++.|++||+.+++.+..+..| ..+.+++|+|+++.+ ++++.|+.+ ++||+++++.+..
T Consensus 77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v--~~~d~~~~~~~~~ 153 (391)
T 1l0q_A 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTV--SVINTVTKAVINT 153 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEE--EEEETTTTEEEEE
T ss_pred cceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEE--EEEECCCCcEEEE
Confidence 789999999988654 56799999999988776665544 578999999999877 677778885 6899998887777
Q ss_pred eecCceeeeeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEee---cCCeeeec
Q psy4754 196 YKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS---WDTTLRDE 271 (304)
Q Consensus 196 ~~~~~~~~~~~~~~~s~~g~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs---~D~~i~~~ 271 (304)
+..+. .+..++|+|+++++ ++++.++.|++||+.+++.+..+. |...+.+++|+|+|++|++++ .|+.|++|
T Consensus 154 ~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 154 VSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp EECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred EecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 66543 35789999999987 567888999999999988777665 566899999999999999888 68999999
Q ss_pred cccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 272 ESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
+...+....... .+.....+.++|+++.
T Consensus 230 d~~~~~~~~~~~----~~~~~~~~~~s~dg~~ 257 (391)
T 1l0q_A 230 DTGTNKITARIP----VGPDPAGIAVTPDGKK 257 (391)
T ss_dssp ETTTTEEEEEEE----CCSSEEEEEECTTSSE
T ss_pred ECCCCeEEEEEe----cCCCccEEEEccCCCE
Confidence 987654322222 2333456777777753
No 125
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1e-28 Score=222.34 Aligned_cols=222 Identities=17% Similarity=0.240 Sum_probs=178.1
Q ss_pred CCceeEEeeccc----------cceEeeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeCCCcee-------eee
Q psy4754 2 GKNHCRLFDLRA----------DKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCR-------VNH 63 (304)
Q Consensus 2 ~~~~v~~wd~~~----------~~~~~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~-------~~~ 63 (304)
.+++|++||+.+ .+.+.. ...+...|++++|+|++. +|++|+.||+|++||+.++.. ...
T Consensus 149 ~dg~V~vwd~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 226 (430)
T 2xyi_A 149 PSSDVLVFDYTKHPSKPEPSGECQPDLR--LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI 226 (430)
T ss_dssp SSSCEEEEEGGGSCSSCCTTCCCCCSEE--EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEE
T ss_pred CCCcEEEEECCCcccccCccccCCCcEE--ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceecccee
Confidence 368899999987 233322 234445699999999998 999999999999999987321 455
Q ss_pred ecCCcCcEEEEEECC-CCCeEEEEeCCCceEEEEeeeCCC---eeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeE
Q psy4754 64 LMGHENRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRAD---KEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTI 138 (304)
Q Consensus 64 ~~~h~~~V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i 138 (304)
+.+|...|.+++|+| ++.+|++++.|+.| ++||++.. ..+..+..+. ..+++++|+|++. .+++|+.|+.|
T Consensus 227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i--~i~d~~~~~~~~~~~~~~~~~--~~v~~i~~~p~~~~~l~tg~~dg~v 302 (430)
T 2xyi_A 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKL--MIWDTRNNNTSKPSHTVDAHT--AEVNCLSFNPYSEFILATGSADKTV 302 (430)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEE--EEEETTCSCSSSCSEEEECCS--SCEEEEEECSSCTTEEEEEETTSEE
T ss_pred ecCCCCCEeeeEEeCCCCCEEEEEeCCCeE--EEEECCCCCCCcceeEeecCC--CCeEEEEeCCCCCCEEEEEeCCCeE
Confidence 678999999999999 67899999999995 78999876 3444444332 3578999999987 68899999999
Q ss_pred EEecCCc-cccceeccCcccceeEEEEcCCCc-EEEEeecCCceEEEEeeecCC--------------ceEEEeecCcee
Q psy4754 139 NVWDSLK-CCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRAD--------------KEVACYKKDSIL 202 (304)
Q Consensus 139 ~iwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~d~~i~i~~~d~~~~--------------~~~~~~~~~~~~ 202 (304)
++||+++ ..++..+.+|...|.+++|+|+++ ++++++.|+.+ ++||+... +.+..+..+.
T Consensus 303 ~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-- 378 (430)
T 2xyi_A 303 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL--HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-- 378 (430)
T ss_dssp EEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCC--EEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS--
T ss_pred EEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcE--EEEeCCCCccccCccccccCCcceEEEcCCCC--
Confidence 9999987 456778889999999999999985 79999999996 68998762 3444443333
Q ss_pred eeeeEEEEcCCCC-EEEEEeCCCcEEEEeCCC
Q psy4754 203 FGATSVDFSVSGR-LLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 203 ~~~~~~~~s~~g~-~l~sg~~d~~i~iwd~~~ 233 (304)
..+.+++|+|+++ +|++++.|+.|++|++.+
T Consensus 379 ~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 379 AKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 3579999999999 999999999999999764
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.3e-29 Score=224.03 Aligned_cols=223 Identities=11% Similarity=0.088 Sum_probs=155.0
Q ss_pred CCceeEEeeccccceEeee---eccccccceeEEEEcC--------CCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCc
Q psy4754 2 GKNHCRLFDLRADKEVACY---KKDSILFGATSVDFSV--------SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 70 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~---~~~~~~~~i~~~~~~~--------~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~ 70 (304)
.|++|||||..++++.... ....|...|.+++|+| ++++|||||.|++|+|||+.++.++..+.+|..+
T Consensus 109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~ 188 (393)
T 4gq1_A 109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP 188 (393)
T ss_dssp TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC
T ss_pred CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC
Confidence 4889999999998654321 2234455599999998 7899999999999999999888888788889999
Q ss_pred EEEEEECCCC-CeEEEEeCCCceEEEEeeeCCCeeEeEEecc-----------------------ceeeceeeeEEc-CC
Q psy4754 71 VSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKD-----------------------SILFGATSVDFS-VS 125 (304)
Q Consensus 71 V~~l~~s~d~-~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~-----------------------~~~~~~~~~~~s-~~ 125 (304)
|.+++|+|++ ++|++|+.|++| ++||+.+.+........ .....+.++.|+ ++
T Consensus 189 v~~v~~~p~~~~~l~~~~~d~~v--~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d 266 (393)
T 4gq1_A 189 GISVQFRPSNPNQLIVGERNGNI--RIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSD 266 (393)
T ss_dssp EEEEEEETTEEEEEEEEETTSEE--EEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTT
T ss_pred cEEEEECCCCCceEEecCCCCEE--EEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCC
Confidence 9999999987 489999999995 78999876543322110 011124566665 89
Q ss_pred CCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcC--------------------CCcEEEEeecCCceEEEEe
Q psy4754 126 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP--------------------DGTAFSSGSWDTTLRCRLF 185 (304)
Q Consensus 126 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp--------------------~~~~las~s~d~~i~i~~~ 185 (304)
++.+++++.|+.+++||+.+......+..|...+..+.+.| ++.++++|+.|++| ++|
T Consensus 267 g~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V--~lw 344 (393)
T 4gq1_A 267 GSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLI--QLI 344 (393)
T ss_dssp TCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEE--EEE
T ss_pred CCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEE--EEE
Confidence 99999999999999999887666555555555444443333 34467788889986 699
Q ss_pred eecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 186 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 186 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
|..+++.......+. ..|.+++|+|+|++||+++.+| +.+|.+
T Consensus 345 d~~~~~~~~~~~~~~--~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 345 NTYEKDSNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp ETTCTTCCEEEEECS--SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred ECCCCcEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 998887765554443 3689999999999999998665 666654
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=5.5e-27 Score=216.89 Aligned_cols=294 Identities=12% Similarity=0.100 Sum_probs=219.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeC--CCceeeeeecCCcCcEEEEEECC-
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS--LKCCRVNHLMGHENRVSCLQVSP- 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~--~~~~~~~~~~~h~~~V~~l~~s~- 78 (304)
++++|++||..+++++..+... +.+.+++|+|+|++|++++.|++|++||+ .+++.+..+. +...+..++|+|
T Consensus 157 ~d~~V~v~D~~t~~~~~~i~~g---~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~ 232 (543)
T 1nir_A 157 DAGQIALVDGDSKKIVKVIDTG---YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKF 232 (543)
T ss_dssp GGTEEEEEETTTCCEEEEEECS---TTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCS
T ss_pred CCCeEEEEECCCceEEEEEecC---cccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCC
Confidence 4789999999999987766532 23789999999999999999999999999 8888888877 445679999999
Q ss_pred ---CCCeEEEEe-CCCceEEEEeeeCCCeeEeEEeccce---------eeceeeeEEcCCCCEE-EEEeCCCeEEEecCC
Q psy4754 79 ---DGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSI---------LFGATSVDFSVSGRLL-FAGYNDYTINVWDSL 144 (304)
Q Consensus 79 ---d~~~l~sgs-~D~~i~~~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~s~~~~~l-~sg~~dg~i~iwd~~ 144 (304)
||++|++++ .|+++ .+||..+.+.+..+..... ...+..+.+++++..+ ++...++.|.+||..
T Consensus 233 ~~~dg~~l~v~~~~~~~v--~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~ 310 (543)
T 1nir_A 233 KGYEDRYTIAGAYWPPQF--AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 310 (543)
T ss_dssp TTCTTTEEEEEEEESSEE--EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT
T ss_pred cCCCCCEEEEEEccCCeE--EEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec
Confidence 999999887 48885 6899988887776654211 0124578899976654 556678999999987
Q ss_pred ccccce-eccCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCceeeeeeEEE-EcCC-CCEEEEE
Q psy4754 145 KCCRVN-HLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVD-FSVS-GRLLFAG 220 (304)
Q Consensus 145 ~~~~~~-~~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~s~~-g~~l~sg 220 (304)
+.+.+. ....+...+..+.|+|+++++++++ .+++| .+||..+++.+..+.......+-.... ++|+ +..++++
T Consensus 311 ~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v--~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~ 388 (543)
T 1nir_A 311 DIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKV--AVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS 388 (543)
T ss_dssp TSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEE--EEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEE
T ss_pred CCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeE--EEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEec
Confidence 654433 1223556688899999999766554 57775 589999998877765432211101112 4677 7777777
Q ss_pred e-CCCcEEEEeCCC-------ceeeEEeeccccceEEEEEccCCCEEEEee-------cCCeeeeccccccchhhee--e
Q psy4754 221 Y-NDYTINVWDSLK-------CCRVNHLMGHENRVSCLQVSPDGTAFSSGS-------WDTTLRDEESKNRYMQYLL--R 283 (304)
Q Consensus 221 ~-~d~~i~iwd~~~-------~~~~~~~~~h~~~i~~l~~sp~g~~lasgs-------~D~~i~~~~~~~~~~~~~~--~ 283 (304)
. .|++|++||..+ .+.+.++.+|.+.+..++|+|+|++|.+++ .|.+|++||..+.-..|.. -
T Consensus 389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v 468 (543)
T 1nir_A 389 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI 468 (543)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH
T ss_pred cCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeec
Confidence 5 679999999988 889999999999999999999999999987 3789999998765433221 1
Q ss_pred cc---ccC-CceeEEEEEecCCcc
Q psy4754 284 SR---ITK-PTQGLTVYFQDRGRS 303 (304)
Q Consensus 284 ~~---~~~-~~~~~~~~~~~~~~~ 303 (304)
.. +.+ .+.-..+.|.|+|+-
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~g~~ 492 (543)
T 1nir_A 469 AEWADLGEGAKRVVQPEYNKRGDE 492 (543)
T ss_dssp HHHHCCCSSCCEEEEEEECSSSSE
T ss_pred hhhcccCCCCCceEeccCCCCCCE
Confidence 11 122 233577788888764
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=2.8e-27 Score=200.26 Aligned_cols=253 Identities=16% Similarity=0.139 Sum_probs=189.2
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC-ceeeeeecCC-cCcEEEEEECCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNHLMGH-ENRVSCLQVSPD 79 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~-~~~~~~~~~h-~~~V~~l~~s~d 79 (304)
.+++|++||+.+++...... +...+.+++|+|+|++|++++ ++.|++||+.+ ++.......| ...|.+++|+|+
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~---~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQ---TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEE---ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred cceeEEEEeCCCCceeeecc---CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 36789999999987654333 344589999999999999886 88999999998 7766666565 477889999999
Q ss_pred CCeEEEEe--CCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEE-EEeCCCeEEEecCCc-cccceeccCc
Q psy4754 80 GTAFSSGS--WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF-AGYNDYTINVWDSLK-CCRVNHLMGH 155 (304)
Q Consensus 80 ~~~l~sgs--~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-sg~~dg~i~iwd~~~-~~~~~~~~~h 155 (304)
+++|++++ .++..+++.++...... ..+.... .+..+.|+|++++++ ++..++.+++|++.. ......+..|
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNL---PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSS---SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCce-EEeecCC---CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence 99999998 44566666666655432 2222222 256788999999887 678899999998532 2334556778
Q ss_pred ccceeEEEEcCCCcEEEEee-cCCceEEEEeeec-CCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC----------
Q psy4754 156 ENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLR-ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND---------- 223 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d---------- 223 (304)
...+.+++|+|+++.++.++ .++.+. +|++. .......+..+. ..+..++|+|+|++|++++.+
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 247 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQ--IWRVRVDGSSVERITDSA--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDL 247 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCE--EEEEETTSSCEEECCCCS--EEEEEEEECTTSSEEEEEEEETTCCSCCSSE
T ss_pred CCccccceECCCCCEEEEEecCCCCcc--EEEECCCCCCcEEEecCC--cccCCeEECCCCCEEEEEEcCCCCCcccccC
Confidence 88999999999999887666 477764 56654 233344443332 356789999999999887765
Q ss_pred -CcEEEEeCCCcee--eEEeeccccceEEEEEccCCCEEEEeecCC
Q psy4754 224 -YTINVWDSLKCCR--VNHLMGHENRVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 224 -~~i~iwd~~~~~~--~~~~~~h~~~i~~l~~sp~g~~lasgs~D~ 266 (304)
+.|.+||+.+++. +..+.+|...+.+++|+|+|++|++++.|.
T Consensus 248 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 248 DVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999887654 444557889999999999999999988764
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=5.7e-27 Score=200.82 Aligned_cols=273 Identities=12% Similarity=0.055 Sum_probs=180.7
Q ss_pred eEeeeeccccccc--eeEEEEcCCCC---EEEEeeCCCcEEEEeCCCc---eeeeeecCCcCcEEEEEECCCCCeEEEEe
Q psy4754 16 EVACYKKDSILFG--ATSVDFSVSGR---LLFAGYNDYTINVWDSLKC---CRVNHLMGHENRVSCLQVSPDGTAFSSGS 87 (304)
Q Consensus 16 ~~~~~~~~~~~~~--i~~~~~~~~g~---~l~tg~~dg~v~iwd~~~~---~~~~~~~~h~~~V~~l~~s~d~~~l~sgs 87 (304)
++..++...-.+. +.++.|-..|- .+++++ ..+|++|++.++ +.+++...|..+|..+.+.||...|+...
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 105 (356)
T 2w18_A 27 LVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVA 105 (356)
T ss_dssp EEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEE
T ss_pred eeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeee
Confidence 3444444433333 56677754432 455665 458999999998 88999999999999999999765443322
Q ss_pred CCCceEE-EEeeeCC-------CeeEeEEeccceeeceeeeEEcCCCCEEEEEe--CCCeEEEecCCc-cccceeccCcc
Q psy4754 88 WDTTLRC-RLFDLRA-------DKEVACYKKDSILFGATSVDFSVSGRLLFAGY--NDYTINVWDSLK-CCRVNHLMGHE 156 (304)
Q Consensus 88 ~D~~i~~-~~wd~~~-------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~--~dg~i~iwd~~~-~~~~~~~~~h~ 156 (304)
... +.+ .++-+.. ++.+.. .. ....+.. + ++++.+.++. .|+.|++|++.. ++.+..+.+|.
T Consensus 106 ~~~-~~~~~v~sla~spd~~~~~~~l~s-~g--~~~~v~~--l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 106 LGN-LEIREIRALFCSSDDESEKQVLLK-SG--NIKAVLG--L-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp ECS-SSEEEEEEECC------CCEEEEE-EE--EEEEEEE--E-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred ecc-ccccceEEEEECCCccccccEEEe-CC--CeEEEEe--c-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 111 101 1111110 111110 00 0011112 2 4455555533 599999999844 66677788999
Q ss_pred cceeEEEEcC---CCcEEEEeecCCceEEEEeeecCCceEEEeecCc-eeeeeeEEEEcCCCCEE------------EEE
Q psy4754 157 NRVSCLQVSP---DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDFSVSGRLL------------FAG 220 (304)
Q Consensus 157 ~~v~~v~~sp---~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l------------~sg 220 (304)
..+..++|+| +++.++++|.|++| ++||+++++.+.++..+. ....+.+++|+|+|+++ ++|
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TI--kIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSG 256 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNI--VIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLR 256 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEE--EEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----------
T ss_pred CceeeEEeeccCCCCceEEEecCCCcE--EEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeecc
Confidence 9999999999 77999999999996 699999999988886443 23456788999999987 568
Q ss_pred eCCCcEEEEeCCCceeeEEe-----eccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCce-eE-
Q psy4754 221 YNDYTINVWDSLKCCRVNHL-----MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQ-GL- 293 (304)
Q Consensus 221 ~~d~~i~iwd~~~~~~~~~~-----~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~-~~- 293 (304)
+.|++|++||..+++.+..+ .+|...+.+..++ +..+|+|+.|++||+||+..+.....++ .+.. ..
T Consensus 257 s~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~----gH~~~vvs 330 (356)
T 2w18_A 257 SPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP----PVSDQHWS 330 (356)
T ss_dssp -CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC----CC--CCCC
T ss_pred CCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec----CCCCCeEE
Confidence 88999999999999887665 3777766655554 8899999999999999998876444443 2332 23
Q ss_pred EEEEecCCccC
Q psy4754 294 TVYFQDRGRSI 304 (304)
Q Consensus 294 ~~~~~~~~~~~ 304 (304)
.++|+|+|+.|
T Consensus 331 ~vafSPDG~~L 341 (356)
T 2w18_A 331 FVKWSGTDSHL 341 (356)
T ss_dssp EEEECSSSSEE
T ss_pred EEEECCCCCEE
Confidence 47899998754
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=4.2e-26 Score=197.64 Aligned_cols=263 Identities=12% Similarity=0.110 Sum_probs=179.8
Q ss_pred CCceeEEeeccc-cceEeeeeccccccceeEEEEcCCCCEEEEeeCC-CcEEEEeCC--Cce--eeeeecCCcCcEEEEE
Q psy4754 2 GKNHCRLFDLRA-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-YTINVWDSL--KCC--RVNHLMGHENRVSCLQ 75 (304)
Q Consensus 2 ~~~~v~~wd~~~-~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d-g~v~iwd~~--~~~--~~~~~~~h~~~V~~l~ 75 (304)
++++|++||+.. ++.. ......+...+.+++|+|+|++|++++.+ +.|++|++. +++ .+..+..+. .+..++
T Consensus 13 ~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 90 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALT-LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIS 90 (343)
T ss_dssp GGTEEEEEEECTTSCEE-EEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEE
T ss_pred CCCeEEEEEECCCCcEE-EeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEE
Confidence 478999999963 3221 11112233458899999999988888776 999999987 443 344454444 788999
Q ss_pred ECCCCCeEEEEeC-CCceEEEEeeeCCC---eeEeEEeccceeeceeeeEEcCCCCEEEEEe-CCCeEEEecCCc-cccc
Q psy4754 76 VSPDGTAFSSGSW-DTTLRCRLFDLRAD---KEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLK-CCRV 149 (304)
Q Consensus 76 ~s~d~~~l~sgs~-D~~i~~~~wd~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~-~dg~i~iwd~~~-~~~~ 149 (304)
|+|++++|+.++. ++.+ .+||+..+ ......... ..+..++|+|+++++++++ .++.|.+||+.+ ++..
T Consensus 91 ~s~dg~~l~~~~~~~~~i--~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 91 TDHQGQFVFVGSYNAGNV--SVTRLEDGLPVGVVDVVEGL---DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp ECTTSSEEEEEETTTTEE--EEEEEETTEEEEEEEEECCC---TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred EcCCCCEEEEEecCCCeE--EEEECCCCccccccccccCC---CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 9999998876665 6664 78998422 233222221 2356789999999888877 899999999876 3321
Q ss_pred e----eccC-cccceeEEEEcCCCcEEEEee-cCCceEEEEeeecC--Cce--EEEee---cC-ceeeeeeEEEEcCCCC
Q psy4754 150 N----HLMG-HENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRA--DKE--VACYK---KD-SILFGATSVDFSVSGR 215 (304)
Q Consensus 150 ~----~~~~-h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~--~~~--~~~~~---~~-~~~~~~~~~~~s~~g~ 215 (304)
. .... ....+..++|+|+++.++.++ .++.+ .+|++.. ++. ..... .. .....+..++|+|+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSV--DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 243 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEE--EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEE--EEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence 1 2222 234688899999999765554 67775 6898843 322 22221 11 1112345799999999
Q ss_pred EEEE-EeCCCcEEEEeCC----CceeeEEeeccccceEEEEEccCCCEEEEee-cCCeeeecccc
Q psy4754 216 LLFA-GYNDYTINVWDSL----KCCRVNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRDEESK 274 (304)
Q Consensus 216 ~l~s-g~~d~~i~iwd~~----~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs-~D~~i~~~~~~ 274 (304)
+|++ +..++.|.+||+. +.+.+..+..+.. +.+++|+|+|++|++++ .|+.|++|+.+
T Consensus 244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 8775 5578999999987 3345555555544 88999999999888777 68999999654
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=4.8e-26 Score=204.06 Aligned_cols=240 Identities=12% Similarity=0.010 Sum_probs=185.9
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCC---cEEEEeCCCceeeeeecCCcCcEEEEEECCCC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY---TINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg---~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 80 (304)
++|++||+.+++... +. .+...+.+++|+|+|+.|++++.|+ .|++||+.+++.. .+..|...+.+++|+|||
T Consensus 159 ~~i~i~d~~g~~~~~-l~--~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg 234 (415)
T 2hqs_A 159 YELRVSDYDGYNQFV-VH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG 234 (415)
T ss_dssp EEEEEEETTSCSCEE-EE--EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS
T ss_pred ceEEEEcCCCCCCEE-Ee--CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC
Confidence 799999998654432 22 2234589999999999999999885 9999999988764 467788899999999999
Q ss_pred CeEE-EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC-CC--eEEEecCCccccceeccCcc
Q psy4754 81 TAFS-SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-DY--TINVWDSLKCCRVNHLMGHE 156 (304)
Q Consensus 81 ~~l~-sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~h~ 156 (304)
+.|+ +++.|+...+++||+.+++.. .+..+. ..+..+.|+|++++++.++. ++ .|.+||+.+++ ...+..|.
T Consensus 235 ~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-~~~l~~~~ 310 (415)
T 2hqs_A 235 SKLAFALSKTGSLNLYVMDLASGQIR-QVTDGR--SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEG 310 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEE-ECCCCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSS
T ss_pred CEEEEEEecCCCceEEEEECCCCCEE-eCcCCC--CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-EEEEecCC
Confidence 9777 777787767789999876543 333222 23568899999999988876 44 67888987654 34455677
Q ss_pred cceeEEEEcCCCcEEEEeecC-CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC---cEEEEeCC
Q psy4754 157 NRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY---TINVWDSL 232 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~d-~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~---~i~iwd~~ 232 (304)
..+.+++|+|||+.+++++.+ +...+++||+.+++... +..+. .+.+++|+|+|++|++++.++ .|.+||+.
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 789999999999999988765 33446899998876533 32222 568899999999999988776 79999986
Q ss_pred CceeeEEeeccccceEEEEEccCC
Q psy4754 233 KCCRVNHLMGHENRVSCLQVSPDG 256 (304)
Q Consensus 233 ~~~~~~~~~~h~~~i~~l~~sp~g 256 (304)
+..+..+.+|.+.|.+++|+|.-
T Consensus 387 -g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 387 -GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp -SCCEEECCCSSSEEEEEEECCCC
T ss_pred -CCcEEEeeCCCCCCcCCcccccc
Confidence 45677788999999999999964
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=1.2e-25 Score=215.28 Aligned_cols=290 Identities=13% Similarity=0.049 Sum_probs=206.2
Q ss_pred eeEEeeccccceEeeeeccccc----------------------cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce--e
Q psy4754 5 HCRLFDLRADKEVACYKKDSIL----------------------FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--R 60 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~----------------------~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~--~ 60 (304)
+|++||+.+++........... ..+.+++|+|||++|++++. +.|.+||+.++. .
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~ 143 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAA 143 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTS
T ss_pred EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcce
Confidence 8999999999876555433222 23789999999999998876 999999998873 4
Q ss_pred eeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccce-e-e------------ceeeeEEcCCC
Q psy4754 61 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI-L-F------------GATSVDFSVSG 126 (304)
Q Consensus 61 ~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~-~-~------------~~~~~~~s~~~ 126 (304)
...+..|...+..++|+|||++|+.++. +. +++||+.+++.......... . . .+..+.||||+
T Consensus 144 ~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~--i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg 220 (741)
T 2ecf_A 144 VRQLTHGEGFATDAKLSPKGGFVSFIRG-RN--LWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD 220 (741)
T ss_dssp CCBCCCSSSCEEEEEECTTSSEEEEEET-TE--EEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS
T ss_pred EEEcccCCcccccccCCCCCCEEEEEeC-Cc--EEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCC
Confidence 5557778889999999999999999885 45 58999987665433221110 0 0 13578999999
Q ss_pred CEEEEEeCCC---------------------------------eEEEecCCc-cccceecc--CcccceeEEEEcCCCcE
Q psy4754 127 RLLFAGYNDY---------------------------------TINVWDSLK-CCRVNHLM--GHENRVSCLQVSPDGTA 170 (304)
Q Consensus 127 ~~l~sg~~dg---------------------------------~i~iwd~~~-~~~~~~~~--~h~~~v~~v~~sp~~~~ 170 (304)
++|++++.|+ .|.+||+.+ ++...... .|...+..++| |||+.
T Consensus 221 ~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~ 299 (741)
T 2ecf_A 221 SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQH 299 (741)
T ss_dssp SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTE
T ss_pred CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCE
Confidence 9999987665 889999877 65433222 47788999999 99999
Q ss_pred EEEeecC---CceEEEEeeecCCceEEEeecCce--eeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC-CceeeEEeeccc
Q psy4754 171 FSSGSWD---TTLRCRLFDLRADKEVACYKKDSI--LFGATSVDFSVSGRLLFAGYNDYTINVWDSL-KCCRVNHLMGHE 244 (304)
Q Consensus 171 las~s~d---~~i~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~-~~~~~~~~~~h~ 244 (304)
++.++.+ ....+++||+.+++....+..+.. ...+..++|+|||+++++++.|+.++||... ++. ...+..|.
T Consensus 300 l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~ 378 (741)
T 2ecf_A 300 LSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN 378 (741)
T ss_dssp EEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS
T ss_pred EEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc
Confidence 8876542 234468999988876555433221 0023578899999999999999988888654 344 67788888
Q ss_pred cceEEE-EEccCCCEEE-EeecCC--eeeeccccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 245 NRVSCL-QVSPDGTAFS-SGSWDT--TLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 245 ~~i~~l-~~sp~g~~la-sgs~D~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
..|.++ +|+|+|+.|+ +++.|+ ++++|+.+..... ..+++....-..+.|+|+|+.
T Consensus 379 ~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~---~~~l~~~~~~~~~~~spdg~~ 438 (741)
T 2ecf_A 379 WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ---PQRLSKAPGMHSASFARNASV 438 (741)
T ss_dssp SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC---CEECCCSCSEEEEEECTTSSE
T ss_pred eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC---eeecccCCCceEEEECCCCCE
Confidence 888887 5999998776 455555 8999987532110 112222222246778888764
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=3.2e-25 Score=191.84 Aligned_cols=263 Identities=8% Similarity=0.022 Sum_probs=190.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee-CCCcEEEEeCCCcee-eeeecCCcCcEEEEEECCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCR-VNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~-~dg~v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~d 79 (304)
++++|++||+.+++........ .... +++|+|+|+++++++ .++.|.+||+.+++. ...+..+..+..+++|+|+
T Consensus 18 ~~~~v~~~d~~~~~~~~~~~~~--~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d 94 (331)
T 3u4y_A 18 HLRRISFFSTDTLEILNQITLG--YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPD 94 (331)
T ss_dssp GGTEEEEEETTTCCEEEEEECC--CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTT
T ss_pred CCCeEEEEeCcccceeeeEEcc--CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCC
Confidence 4678999999999887665532 2335 999999999665554 489999999998887 6666667666666999999
Q ss_pred CCeEEEEeCCC---ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-eCCCe-EEEecCCccccc----e
Q psy4754 80 GTAFSSGSWDT---TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYT-INVWDSLKCCRV----N 150 (304)
Q Consensus 80 ~~~l~sgs~D~---~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-~~dg~-i~iwd~~~~~~~----~ 150 (304)
+++|+++..++ . +++||+.+.+.+..+.... ....++|+|++++++++ ..++. |.+|++.....+ .
T Consensus 95 g~~l~~~~~~~~~~~--i~v~d~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~ 169 (331)
T 3u4y_A 95 DQFAVTVTGLNHPFN--MQSYSFLKNKFISTIPIPY---DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQ 169 (331)
T ss_dssp SSEEEECCCSSSSCE--EEEEETTTTEEEEEEECCT---TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred CCEEEEecCCCCccc--EEEEECCCCCeEEEEECCC---CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCC
Confidence 99998555542 5 5799999888776655432 34689999999866554 55578 999997643322 1
Q ss_pred eccCcccceeEEEEcCCCcEEE-EeecCCceEEEEeeecCCce---EEEeecCceeeeeeEEEEcCCCCEEEEEe-CCCc
Q psy4754 151 HLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADKE---VACYKKDSILFGATSVDFSVSGRLLFAGY-NDYT 225 (304)
Q Consensus 151 ~~~~h~~~v~~v~~sp~~~~la-s~s~d~~i~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~s~~g~~l~sg~-~d~~ 225 (304)
........+..++|+|+++.++ ++..++.+ .+||+.+++. +..+... ..+..++|+|+|++++++. .++.
T Consensus 170 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v--~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~ 244 (331)
T 3u4y_A 170 EFISGGTRPFNITFTPDGNFAFVANLIGNSI--GILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTESTVD 244 (331)
T ss_dssp EEECSSSSEEEEEECTTSSEEEEEETTTTEE--EEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSSEEE
T ss_pred ccccCCCCccceEECCCCCEEEEEeCCCCeE--EEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcCCCE
Confidence 2223345678999999998655 44456764 6899988877 6665543 2457889999999776654 5678
Q ss_pred EEEEeCCCcee--eEEeecc----ccc---eEEEEEccCCCEEEEee-cCCeeeeccccccc
Q psy4754 226 INVWDSLKCCR--VNHLMGH----ENR---VSCLQVSPDGTAFSSGS-WDTTLRDEESKNRY 277 (304)
Q Consensus 226 i~iwd~~~~~~--~~~~~~h----~~~---i~~l~~sp~g~~lasgs-~D~~i~~~~~~~~~ 277 (304)
|.+||..+++. +..+..+ ..+ ..+++|+|||++|+.++ .++.|++|+...+.
T Consensus 245 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 245 VFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 99999988776 4443332 222 24589999999886554 56799999987654
No 134
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=3.8e-25 Score=191.17 Aligned_cols=264 Identities=12% Similarity=0.029 Sum_probs=193.4
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeeeeecC-C----cCcEEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMG-H----ENRVSCLQ 75 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~-h----~~~V~~l~ 75 (304)
.+++|++||+.+++.+..+........+..++|+|+|+.+ ++++.++.|.+||+.+++.+..+.. + ...+..++
T Consensus 9 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceE
Confidence 4789999999999887665533211036789999999755 5677789999999998887766542 2 22567899
Q ss_pred ECCCCCeEEEEe------------CCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecC
Q psy4754 76 VSPDGTAFSSGS------------WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 143 (304)
Q Consensus 76 ~s~d~~~l~sgs------------~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~ 143 (304)
|+|+|++|++++ .++. +.+||+.+.+.+..+.... .+..+.|+|++++++++ ++.|.+||+
T Consensus 89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~--i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~--~~~i~~~d~ 161 (337)
T 1pby_B 89 LSPDGKTLAIYESPVRLELTHFEVQPTR--VALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGL--GRDLHVMDP 161 (337)
T ss_dssp ECTTSSEEEEEEEEEEECSSCEEECCCE--EEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEE--SSSEEEEET
T ss_pred ECCCCCEEEEEecccccccccccccCce--EEEEECCCCcEEEEEeCCC---CcceeEECCCCCEEEEe--CCeEEEEEC
Confidence 999999888875 4566 4789998877766554422 34678899999988887 689999999
Q ss_pred CccccceeccCcccceeEEEEcCCCcEEEEeecC-Cce---------------------EEEEeeecCCceEEEeecCce
Q psy4754 144 LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD-TTL---------------------RCRLFDLRADKEVACYKKDSI 201 (304)
Q Consensus 144 ~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d-~~i---------------------~i~~~d~~~~~~~~~~~~~~~ 201 (304)
.+.+....+..+.. ...+.|+|+++.++..+.+ +.+ .+.+||+.+++.. .......
T Consensus 162 ~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~ 239 (337)
T 1pby_B 162 EAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIM 239 (337)
T ss_dssp TTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEEC
T ss_pred CCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCC
Confidence 88776655443321 1123789998866554433 322 3578898887654 2221111
Q ss_pred eeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 202 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
...+..++|+|+|++++++ ++.|.+||..+++.+..+..+ ..+.+++|+|+|++|++++.|+.|++|++..+.
T Consensus 240 ~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 1245689999999999988 689999999998887776643 567899999999999999999999999986543
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=2.7e-25 Score=212.04 Aligned_cols=271 Identities=11% Similarity=0.014 Sum_probs=187.8
Q ss_pred CCceeEEeeccccceEeeeecccc-ccceeEEEEcCCCCEEEEeeCC---------CcEEEEeCCCcee--eeeecCCcC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSI-LFGATSVDFSVSGRLLFAGYND---------YTINVWDSLKCCR--VNHLMGHEN 69 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~-~~~i~~~~~~~~g~~l~tg~~d---------g~v~iwd~~~~~~--~~~~~~h~~ 69 (304)
.|++|++||+.++++...+..+.. ...+.+++|+|||++|++++.+ +.+.+||+.+++. +....+|..
T Consensus 35 ~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 114 (723)
T 1xfd_A 35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA 114 (723)
T ss_dssp SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccc
Confidence 367899999999987655543221 1248999999999999998775 7888999988765 333345666
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceee----------------ceeeeEEcCCCCEEEEEe
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF----------------GATSVDFSVSGRLLFAGY 133 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~----------------~~~~~~~s~~~~~l~sg~ 133 (304)
.+..++|||||+.|+.++. +. +++||+.+++............ ....+.||||+++|++++
T Consensus 115 ~~~~~~~SPdG~~la~~~~-~~--i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~ 191 (723)
T 1xfd_A 115 KLQYAGWGPKGQQLIFIFE-NN--IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (723)
T ss_dssp CCSBCCBCSSTTCEEEEET-TE--EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred cccccEECCCCCEEEEEEC-Ce--EEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence 6889999999999999886 45 5899998766554433211100 125789999999999887
Q ss_pred CCC----------------------------------eEEEecCCccccceeccCc------ccceeEEEEcCCCcEEEE
Q psy4754 134 NDY----------------------------------TINVWDSLKCCRVNHLMGH------ENRVSCLQVSPDGTAFSS 173 (304)
Q Consensus 134 ~dg----------------------------------~i~iwd~~~~~~~~~~~~h------~~~v~~v~~sp~~~~las 173 (304)
.++ .|.+||+.+.+....+..+ ...+..++|+|||+.+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~ 271 (723)
T 1xfd_A 192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVT 271 (723)
T ss_dssp EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEE
T ss_pred ECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEE
Confidence 543 8999998876654444443 678999999999998877
Q ss_pred eecC--CceEEEEeeecCCceEEEeecCc-eeee--eeEEEEcCCCCEEEE--EeCCC------cEEEEeC-CCce--ee
Q psy4754 174 GSWD--TTLRCRLFDLRADKEVACYKKDS-ILFG--ATSVDFSVSGRLLFA--GYNDY------TINVWDS-LKCC--RV 237 (304)
Q Consensus 174 ~s~d--~~i~i~~~d~~~~~~~~~~~~~~-~~~~--~~~~~~s~~g~~l~s--g~~d~------~i~iwd~-~~~~--~~ 237 (304)
.+.. ....+++||+.+++......... .... ...++|+|||+.|+. +..++ .|.+||. ..+. +.
T Consensus 272 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (723)
T 1xfd_A 272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI 351 (723)
T ss_dssp EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC
T ss_pred EEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccce
Confidence 6543 22346899998877654432211 1001 136789999997765 45666 5667773 3333 14
Q ss_pred EEeeccccceEE-EEEccCCCEEEEeecC---Ceeeeccccc
Q psy4754 238 NHLMGHENRVSC-LQVSPDGTAFSSGSWD---TTLRDEESKN 275 (304)
Q Consensus 238 ~~~~~h~~~i~~-l~~sp~g~~lasgs~D---~~i~~~~~~~ 275 (304)
..+..+...+.. ++|+|||+.|+..+.+ +++++|+.+.
T Consensus 352 ~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 352 QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp CBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred eEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 445544444554 6999999999866655 7899997654
No 136
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.94 E-value=8.7e-24 Score=184.33 Aligned_cols=267 Identities=12% Similarity=0.061 Sum_probs=176.1
Q ss_pred CceeEEeeccc--cceEeeeeccccccceeEEEEcCCCCEEEEeeC--CCcEEEEeCCCce--eeeeecCCcCcEEEEEE
Q psy4754 3 KNHCRLFDLRA--DKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCC--RVNHLMGHENRVSCLQV 76 (304)
Q Consensus 3 ~~~v~~wd~~~--~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~--dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~ 76 (304)
++.|.+|++.. ++... ............++|+|+|++++++.. ++.|.+|++.+++ .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~-~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTN-DGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEE-EEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEE-eeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 34577776654 44322 111222334788999999994444432 6999999997664 44444557778889999
Q ss_pred CCCCCeEEEEe-CCCceEEEEeeeCCC---eeEeEEeccce-------eeceeeeEEcCCCCEEEEEeCCCeEEEecCC-
Q psy4754 77 SPDGTAFSSGS-WDTTLRCRLFDLRAD---KEVACYKKDSI-------LFGATSVDFSVSGRLLFAGYNDYTINVWDSL- 144 (304)
Q Consensus 77 s~d~~~l~sgs-~D~~i~~~~wd~~~~---~~~~~~~~~~~-------~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~- 144 (304)
+|||++|++++ .++++ .+||+... ..+........ ...+..++|+|+++.+++...++.|.+||+.
T Consensus 94 spdg~~l~~~~~~~~~v--~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTA--EVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp ETTTTEEEEEETTTTEE--EEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred CCCCCEEEEEeCCCCEE--EEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 99999888887 56774 78998632 22222221110 0124578999999966666678999999987
Q ss_pred cccc--ceeccCc-ccceeEEEEcCCCcEEEE-eecCCceEEEEeeecC--Cce--EEEeecCce----eeeeeEEEEcC
Q psy4754 145 KCCR--VNHLMGH-ENRVSCLQVSPDGTAFSS-GSWDTTLRCRLFDLRA--DKE--VACYKKDSI----LFGATSVDFSV 212 (304)
Q Consensus 145 ~~~~--~~~~~~h-~~~v~~v~~sp~~~~las-~s~d~~i~i~~~d~~~--~~~--~~~~~~~~~----~~~~~~~~~s~ 212 (304)
+++. +..+..+ ...+..++|+|||++++. +..++.+ .+|++.. ++. +........ ...+..++|+|
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v--~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQI--ASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEE--EEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEE--EEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 3321 1112222 235778999999996655 4556665 5787764 332 222211110 02367899999
Q ss_pred CCCEE-EEEeCCCcEEEEeCC---CceeeEEeeccccceEEEEEccCCCEEEEeecC-Ceeeecccc
Q psy4754 213 SGRLL-FAGYNDYTINVWDSL---KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD-TTLRDEESK 274 (304)
Q Consensus 213 ~g~~l-~sg~~d~~i~iwd~~---~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D-~~i~~~~~~ 274 (304)
+|++| ++...++.|.+|++. +.+.+..+..|...+.+++|+|||++|++++.+ +.|++|+.+
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 99987 556678999999986 334566666677778999999999988887764 899999554
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=2.9e-24 Score=198.69 Aligned_cols=278 Identities=18% Similarity=0.137 Sum_probs=204.7
Q ss_pred CceeEEeec--cccceEeeeeccccccceeEEEEcC----CCCEEEEee-CCCcEEEEeCCCceeeeeecC---------
Q psy4754 3 KNHCRLFDL--RADKEVACYKKDSILFGATSVDFSV----SGRLLFAGY-NDYTINVWDSLKCCRVNHLMG--------- 66 (304)
Q Consensus 3 ~~~v~~wd~--~~~~~~~~~~~~~~~~~i~~~~~~~----~g~~l~tg~-~dg~v~iwd~~~~~~~~~~~~--------- 66 (304)
|++|++||+ .+++++..++. ......++|+| +|+++++++ .+++|.+||..+++.++.+..
T Consensus 199 d~~V~v~D~~~~t~~~~~~i~~---g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 199 DARIDMIDLWAKEPTKVAEIKI---GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp TSEEEEEETTSSSCEEEEEEEC---CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred CCeEEEEECcCCCCcEEEEEec---CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 588999999 78877665542 33478999999 999998887 489999999999988877754
Q ss_pred -C-cCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCCeeEe--EEeccceeeceeeeEEcCCCCEEEEEe-CCCeEEE
Q psy4754 67 -H-ENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVA--CYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINV 140 (304)
Q Consensus 67 -h-~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~sg~-~dg~i~i 140 (304)
| ...+..+.++|++. ++++...+++ +++||..+.+.+. .+... .....+.|+|+++++++++ .+++|.+
T Consensus 276 ~~~~~~v~~i~~s~~~~~~~vs~~~~g~--i~vvd~~~~~~l~~~~i~~~---~~~~~~~~spdg~~l~va~~~~~~v~v 350 (543)
T 1nir_A 276 YHPEPRVAAIIASHEHPEFIVNVKETGK--VLLVNYKDIDNLTVTSIGAA---PFLHDGGWDSSHRYFMTAANNSNKVAV 350 (543)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTE--EEEEECTTSSSCEEEEEECC---SSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCe--EEEEEecCCCcceeEEeccC---cCccCceECCCCCEEEEEecCCCeEEE
Confidence 2 23789999999776 4556666777 4789987654433 22211 1245789999999877655 5899999
Q ss_pred ecCCccccceeccC----cccceeEEEEcCC-CcEEEEee-cCCceEEEEeeecC-------CceEEEeecCceeeeeeE
Q psy4754 141 WDSLKCCRVNHLMG----HENRVSCLQVSPD-GTAFSSGS-WDTTLRCRLFDLRA-------DKEVACYKKDSILFGATS 207 (304)
Q Consensus 141 wd~~~~~~~~~~~~----h~~~v~~v~~sp~-~~~las~s-~d~~i~i~~~d~~~-------~~~~~~~~~~~~~~~~~~ 207 (304)
||..+++.+..+.. |.+....+ ++|+ +..+++++ .|++| .+||..+ .+.+..+..+. ..+..
T Consensus 351 ~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V--~v~d~~~~~~~~~~~~~v~~l~~~g--~~~~~ 425 (543)
T 1nir_A 351 IDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSI--SLIGTDPKNHPQYAWKKVAELQGQG--GGSLF 425 (543)
T ss_dssp EETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEE--EEEECCTTTCTTTBTSEEEEEECSC--SCCCC
T ss_pred EECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceE--EEEEeCCCCCchhcCeEEEEEEcCC--CCceE
Confidence 99998887766543 65544443 4777 66677775 57885 6899987 67777777654 24567
Q ss_pred EEEcCCCCEEEEEeC-------CCcEEEEeCCCceee-EEe--------eccccceEEEEEccCCCEEEEee-----cCC
Q psy4754 208 VDFSVSGRLLFAGYN-------DYTINVWDSLKCCRV-NHL--------MGHENRVSCLQVSPDGTAFSSGS-----WDT 266 (304)
Q Consensus 208 ~~~s~~g~~l~sg~~-------d~~i~iwd~~~~~~~-~~~--------~~h~~~i~~l~~sp~g~~lasgs-----~D~ 266 (304)
+.++|+|++|.+++. +++|.+||+.+++.. ..+ ..|..++..++|+|+|+.+..+. .|+
T Consensus 426 v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~ 505 (543)
T 1nir_A 426 IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS 505 (543)
T ss_dssp EECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCC
T ss_pred EEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCC
Confidence 899999999999872 679999999987766 333 35678999999999999988663 479
Q ss_pred eeeeccccccchhheee-ccccCCceeE
Q psy4754 267 TLRDEESKNRYMQYLLR-SRITKPTQGL 293 (304)
Q Consensus 267 ~i~~~~~~~~~~~~~~~-~~~~~~~~~~ 293 (304)
.|.+||.....+....+ .++..|.+..
T Consensus 506 ~i~v~D~~t~~~~~~i~~~~~~~p~g~~ 533 (543)
T 1nir_A 506 ALVVVDDKTLKLKAVVKDPRLITPTGKF 533 (543)
T ss_dssp EEEEEETTTTEEEEEECCTTCCSEEEEE
T ss_pred eEEEEECCCceEEEeecCCCccCCCeee
Confidence 99999987765443333 3344444433
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=2.7e-23 Score=180.91 Aligned_cols=251 Identities=11% Similarity=0.053 Sum_probs=193.2
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCE-EEEeeCCCcEEEEeCCCceeeeeecCCcCc---------EE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL-LFAGYNDYTINVWDSLKCCRVNHLMGHENR---------VS 72 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~-l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~---------V~ 72 (304)
+++|.+||..+++....+... ..+..++|+|+|+. +++...++.|.+||..+++.+..+..+... +.
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHND---LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPR 144 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEES---SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEE
T ss_pred CccEEEEcCCCCeEEEEEecC---CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCc
Confidence 678999999999877665532 23678999999984 556677899999999999887777654422 78
Q ss_pred EEEECCCCCeEEEEeC--CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce
Q psy4754 73 CLQVSPDGTAFSSGSW--DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 150 (304)
Q Consensus 73 ~l~~s~d~~~l~sgs~--D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~ 150 (304)
+++|+|++++++.++. ++. +++||..+.+....+.... ..+..+.|+|+++++++++.++.|.+||..+.+.+.
T Consensus 145 ~~~~s~dg~~l~~~~~~~~~~--i~~~d~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~ 220 (353)
T 3vgz_A 145 ELVADDATNTVYISGIGKESV--IWVVDGGNIKLKTAIQNTG--KMSTGLALDSEGKRLYTTNADGELITIDTADNKILS 220 (353)
T ss_dssp EEEEETTTTEEEEEEESSSCE--EEEEETTTTEEEEEECCCC--TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEE
T ss_pred eEEECCCCCEEEEEecCCCce--EEEEcCCCCceEEEecCCC--CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEE
Confidence 8999999998777663 555 5789999888777665221 124678999999999999999999999998877665
Q ss_pred ecc----CcccceeEEEEcCCCcEEEEeecC-CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe-CCC
Q psy4754 151 HLM----GHENRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDY 224 (304)
Q Consensus 151 ~~~----~h~~~v~~v~~sp~~~~las~s~d-~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~-~d~ 224 (304)
.+. ++...+..++|+|+++.++.++.+ +. +.+||..+++.+..+.... ...++|+|+|++++++. .++
T Consensus 221 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~--v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~ 294 (353)
T 3vgz_A 221 RKKLLDDGKEHFFINISLDTARQRAFITDSKAAE--VLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAG 294 (353)
T ss_dssp EEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE--EEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTT
T ss_pred EEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE--EEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCC
Confidence 543 355678889999999977666554 66 4689998888776665433 25688999999665554 689
Q ss_pred cEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCe
Q psy4754 225 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 225 ~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
.|.+||..+++.+..+..+ ..+.+++|+|||++|..+..++.
T Consensus 295 ~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 295 KVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQKS 336 (353)
T ss_dssp EEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECCC
T ss_pred eEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcccc
Confidence 9999999999888777654 47899999999997766655543
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=8.1e-25 Score=209.39 Aligned_cols=265 Identities=11% Similarity=-0.032 Sum_probs=189.5
Q ss_pred ceeEEEEcCCCCEEEEeeC-CC-----cEEEEeCCCceeeeeecCCcC------------------------cEEEEEEC
Q psy4754 28 GATSVDFSVSGRLLFAGYN-DY-----TINVWDSLKCCRVNHLMGHEN------------------------RVSCLQVS 77 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~-dg-----~v~iwd~~~~~~~~~~~~h~~------------------------~V~~l~~s 77 (304)
.+.+++|+|||++|++++. |+ +|++||+.+++....+..+.. .|.+++|+
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 4889999999999999988 88 999999998876665554432 37899999
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCe--eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCc
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADK--EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 155 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 155 (304)
|||++|++++. +. +++||+.++. ....+..+ ...+..+.|||||++++.++ ++.|.+||+.+++.......+
T Consensus 118 pDg~~l~~~~~-~~--i~~~d~~~~~~~~~~~l~~~--~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 118 PDAQRLLFPLG-GE--LYLYDLKQEGKAAVRQLTHG--EGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp TTSSEEEEEET-TE--EEEEESSSCSTTSCCBCCCS--SSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred CCCCEEEEEeC-Cc--EEEEECCCCCcceEEEcccC--CcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence 99999999886 55 5899998762 22222222 12356889999999999887 469999998876544333333
Q ss_pred ccc----------------eeEEEEcCCCcEEEEeecCC-------------------------------ceEEEEeeec
Q psy4754 156 ENR----------------VSCLQVSPDGTAFSSGSWDT-------------------------------TLRCRLFDLR 188 (304)
Q Consensus 156 ~~~----------------v~~v~~sp~~~~las~s~d~-------------------------------~i~i~~~d~~ 188 (304)
... +..++|+|||+.|++++.|+ .+.+++||+.
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 322 47799999999999887664 2346789988
Q ss_pred C-CceEEEeecCceeeeeeEEEEcCCCCEEEEEeC-----CCcEEEEeCCCceeeEEeecccc----ceEEEEEccCCCE
Q psy4754 189 A-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-----DYTINVWDSLKCCRVNHLMGHEN----RVSCLQVSPDGTA 258 (304)
Q Consensus 189 ~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~-----d~~i~iwd~~~~~~~~~~~~h~~----~i~~l~~sp~g~~ 258 (304)
+ ++.............+..++| |||++|++++. +..|.+||..+++....+..|.. .+.+++|+|||+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~ 350 (741)
T 2ecf_A 272 EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSI 350 (741)
T ss_dssp TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCE
T ss_pred CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeE
Confidence 7 665443322112235688999 99999997653 56799999998877666655543 4568999999999
Q ss_pred EEEeecCCeeeeccccccchhheeeccccCCceeE-EE-EEecCCcc
Q psy4754 259 FSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGL-TV-YFQDRGRS 303 (304)
Q Consensus 259 lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 303 (304)
+++++.|+.+++|..+.... ..+++.+...+ .+ .++|+|+.
T Consensus 351 ~~~~~~~g~~~l~~~~~~~~----~~~l~~~~~~v~~~~~~s~dg~~ 393 (741)
T 2ecf_A 351 LWSSERTGFQHLYRIDSKGK----AAALTHGNWSVDELLAVDEKAGL 393 (741)
T ss_dssp EEEECTTSSCEEEEECSSSC----EEESCCSSSCEEEEEEEETTTTE
T ss_pred EEEecCCCccEEEEEcCCCC----eeeeeecceEEEeEeEEeCCCCE
Confidence 99999999999887653221 22333333322 33 47887753
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=1e-24 Score=208.15 Aligned_cols=241 Identities=11% Similarity=0.068 Sum_probs=173.2
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcC---cEEEEEECCCCCeEEEEeCCCce-------EEEEee
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN---RVSCLQVSPDGTAFSSGSWDTTL-------RCRLFD 98 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~---~V~~l~~s~d~~~l~sgs~D~~i-------~~~~wd 98 (304)
..+++|+|||+++++ +.||+|++||+.+++....+.+|.. .|.+++|||||++|++++.|..+ .+++||
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 577899999997766 7899999999999987777776664 49999999999999999876432 257999
Q ss_pred eCCCeeEeEEecc-ceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccc------------------e
Q psy4754 99 LRADKEVACYKKD-SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR------------------V 159 (304)
Q Consensus 99 ~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~------------------v 159 (304)
+.+++. ..+... .....+..++|||||+.++.++. +.|++||+.+++.......+... +
T Consensus 98 ~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 98 IPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp SSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred CCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 987664 222211 11112567899999999999886 79999998876654433333332 3
Q ss_pred eEEEEcCCCcEEEEeecCC--------------------------------ceEEEEeeecCCceEEEeecCc----eee
Q psy4754 160 SCLQVSPDGTAFSSGSWDT--------------------------------TLRCRLFDLRADKEVACYKKDS----ILF 203 (304)
Q Consensus 160 ~~v~~sp~~~~las~s~d~--------------------------------~i~i~~~d~~~~~~~~~~~~~~----~~~ 203 (304)
.+++|+|||+.|++++.|. ...+++||+.+++....+.... ...
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 7899999999999887653 1246789988776433333221 123
Q ss_pred eeeEEEEcCCCCEEEEEeC----CCcEEEEeCCCceeeEEeec-cccceE----EEEEccCCCEEEE--eecCC----e-
Q psy4754 204 GATSVDFSVSGRLLFAGYN----DYTINVWDSLKCCRVNHLMG-HENRVS----CLQVSPDGTAFSS--GSWDT----T- 267 (304)
Q Consensus 204 ~~~~~~~s~~g~~l~sg~~----d~~i~iwd~~~~~~~~~~~~-h~~~i~----~l~~sp~g~~las--gs~D~----~- 267 (304)
.+..++|+|||++|++... +..|.+||+.+++....+.. |...+. +++|||||+.|+. +..|+ .
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 335 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCccee
Confidence 5678999999999877643 35799999988876655543 344443 7899999997775 45666 4
Q ss_pred -eeecc
Q psy4754 268 -LRDEE 272 (304)
Q Consensus 268 -i~~~~ 272 (304)
|.+|+
T Consensus 336 ~l~~~d 341 (723)
T 1xfd_A 336 HITVSS 341 (723)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 55555
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=3.6e-24 Score=203.94 Aligned_cols=286 Identities=13% Similarity=0.083 Sum_probs=191.1
Q ss_pred eEEeeccccce--Eeeeecccc--------------ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcC
Q psy4754 6 CRLFDLRADKE--VACYKKDSI--------------LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 69 (304)
Q Consensus 6 v~~wd~~~~~~--~~~~~~~~~--------------~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~ 69 (304)
| +||+.++++ ...+..... ...+.+++|+|| ..++.+ .++++++||+.+++... +..+..
T Consensus 46 i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~ 121 (706)
T 2z3z_A 46 L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNE 121 (706)
T ss_dssp E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTT
T ss_pred E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcc
Confidence 8 999999977 333322111 135899999999 555444 45999999998876544 445677
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCC-----CeeEeEEeccce-e-e----------ceeeeEEcCCCCEEEEE
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA-----DKEVACYKKDSI-L-F----------GATSVDFSVSGRLLFAG 132 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~-----~~~~~~~~~~~~-~-~----------~~~~~~~s~~~~~l~sg 132 (304)
.+.+++|+|||+.|+++ .|+. +++||+.+ ++.......... . . .+..+.|+||+++|+++
T Consensus 122 ~~~~~~~SpdG~~la~~-~~~~--i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~ 198 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYV-RNHN--LYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY 198 (706)
T ss_dssp CCTTCEECTTSSEEEEE-ETTE--EEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE
T ss_pred cccCCcCCCCCCEEEEE-ECCe--EEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE
Confidence 78899999999999985 5777 47999987 554432221111 0 0 13678999999999998
Q ss_pred e---------------------------------CCCeEEEecCCccccceec--cCcccceeEEEEcCCCcEEEEeecC
Q psy4754 133 Y---------------------------------NDYTINVWDSLKCCRVNHL--MGHENRVSCLQVSPDGTAFSSGSWD 177 (304)
Q Consensus 133 ~---------------------------------~dg~i~iwd~~~~~~~~~~--~~h~~~v~~v~~sp~~~~las~s~d 177 (304)
+ .+..|.+||+.+++..... ..|...+..++|+||++.+++++.|
T Consensus 199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 278 (706)
T 2z3z_A 199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN 278 (706)
T ss_dssp EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC
T ss_pred EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeC
Confidence 7 4578999999876643322 2567789999999999999988766
Q ss_pred C---ceEEEEeeecCCceEEEee-c--CceeeeeeEEEEcC--CCCEEEEEeCCCcEEEEeCC-CceeeEEeeccccceE
Q psy4754 178 T---TLRCRLFDLRADKEVACYK-K--DSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSL-KCCRVNHLMGHENRVS 248 (304)
Q Consensus 178 ~---~i~i~~~d~~~~~~~~~~~-~--~~~~~~~~~~~~s~--~g~~l~sg~~d~~i~iwd~~-~~~~~~~~~~h~~~i~ 248 (304)
. ...+++||+.+++...... . ......+..++|+| +|+++++++.|+.++||... ++..+..+..|...+.
T Consensus 279 ~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~ 358 (706)
T 2z3z_A 279 RAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT 358 (706)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE
T ss_pred CCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE
Confidence 5 2346799998873332221 1 11111235678999 99999999999999999875 5667777888888887
Q ss_pred E-EEEccCCCEEEEeecC-C----eeeeccccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 249 C-LQVSPDGTAFSSGSWD-T----TLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 249 ~-l~~sp~g~~lasgs~D-~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
+ ++|+|+|+.|+.++.+ + .|..|+...+... +++....-..+.|+|+|+.
T Consensus 359 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-----~l~~~~~~~~~~~spdg~~ 414 (706)
T 2z3z_A 359 NFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-----DLTPESGMHRTQLSPDGSA 414 (706)
T ss_dssp EEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-----ESCCSSSEEEEEECTTSSE
T ss_pred eeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-----eccCCCceEEEEECCCCCE
Confidence 7 8999999988765554 3 4444454333211 1221222245778888764
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=3.6e-23 Score=180.09 Aligned_cols=265 Identities=10% Similarity=0.054 Sum_probs=197.2
Q ss_pred ceeEEEEcCCCCEEEEeeC-------CCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEE-EEeCCCceEEEEeee
Q psy4754 28 GATSVDFSVSGRLLFAGYN-------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDL 99 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~-------dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~-sgs~D~~i~~~~wd~ 99 (304)
++..++|+|+|+.+++++. ++.|.+||..+++.+..+.. ...+..++|+|++++++ ++..++. +.+||.
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~--v~~~d~ 118 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSA--VTAIDA 118 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTE--EEEEET
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCE--EEEEeC
Confidence 4788999999998877764 57899999999987777653 34467899999999555 4455676 478999
Q ss_pred CCCeeEeEEecccee-------eceeeeEEcCCCCEEEEEe--CCCeEEEecCCccccceeccCcccceeEEEEcCCCcE
Q psy4754 100 RADKEVACYKKDSIL-------FGATSVDFSVSGRLLFAGY--NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 170 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 170 (304)
.+++.+..+...... ..+..+.|+|+++++++++ .++.|.+||..+.+.+..+..+...+.+++|+|+++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 888877666543211 1246789999999887765 4789999999888777766656666889999999999
Q ss_pred EEEeecCCceEEEEeeecCCceEEEeecCc--eeeeeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCceeeEEeeccccce
Q psy4754 171 FSSGSWDTTLRCRLFDLRADKEVACYKKDS--ILFGATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCRVNHLMGHENRV 247 (304)
Q Consensus 171 las~s~d~~i~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~l~sg~~-d~~i~iwd~~~~~~~~~~~~h~~~i 247 (304)
+++++.++.+ .+||..+++....+.... ....+..++|+|+|+++++++. ++.|.+||..+++.+..+..+. .
T Consensus 199 l~~~~~~~~i--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~ 274 (353)
T 3vgz_A 199 LYTTNADGEL--ITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--S 274 (353)
T ss_dssp EEEECTTSEE--EEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--C
T ss_pred EEEEcCCCeE--EEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--C
Confidence 9998888875 589999888766654311 1234577999999997777654 4899999999988887776543 2
Q ss_pred EEEEEccCCCEE-EEeecCCeeeeccccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 248 SCLQVSPDGTAF-SSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 248 ~~l~~sp~g~~l-asgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
.+++|+|+|+++ ++...|+.|.+|+...+..... +..+...-.++++|+|+.
T Consensus 275 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~----~~~~~~~~~~~~s~dg~~ 327 (353)
T 3vgz_A 275 LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT----FDTPTHPNSLALSADGKT 327 (353)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE----EECCSEEEEEEECTTSCE
T ss_pred ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE----EecCCCCCeEEEcCCCCE
Confidence 679999999855 4555799999999765442222 222334567788888764
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=2.4e-23 Score=198.22 Aligned_cols=266 Identities=16% Similarity=0.133 Sum_probs=185.1
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC-----ceeeeeecCCcCc-------
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-----CCRVNHLMGHENR------- 70 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~-----~~~~~~~~~h~~~------- 70 (304)
+++|++||+.+++...... ....+.+++|+|||+.|+.+ .|+.|++||+.+ ++.......+...
T Consensus 100 ~~~i~~~d~~~~~~~~l~~---~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYLFD---TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp TTEEEEEETTTTEEEEEEC---CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred CCEEEEEECCCCceEEccC---CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 5789999999987644322 22347889999999999885 789999999988 7665544444443
Q ss_pred -------EEEEEECCCCCeEEEEeCC-------------------------------CceEEEEeeeCCCeeEeEEeccc
Q psy4754 71 -------VSCLQVSPDGTAFSSGSWD-------------------------------TTLRCRLFDLRADKEVACYKKDS 112 (304)
Q Consensus 71 -------V~~l~~s~d~~~l~sgs~D-------------------------------~~i~~~~wd~~~~~~~~~~~~~~ 112 (304)
+.+++|+|||++|++++.| ....+++||+.+++.........
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 4789999999999998843 33557899998776543322111
Q ss_pred eeeceeeeEEcCCCCEEEEEeCCC-----eEEEecCCccccceecc--Cccc---ceeEEEEcC--CCcEEEEeecCCce
Q psy4754 113 ILFGATSVDFSVSGRLLFAGYNDY-----TINVWDSLKCCRVNHLM--GHEN---RVSCLQVSP--DGTAFSSGSWDTTL 180 (304)
Q Consensus 113 ~~~~~~~~~~s~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~--~h~~---~v~~v~~sp--~~~~las~s~d~~i 180 (304)
....+..+.|+||++++++++.++ .|.+||+.+++....+. .+.. .+..++|+| |++++++++.|+.+
T Consensus 256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN 335 (706)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence 112356899999999999877665 99999998773333222 1222 246789999 99999999999887
Q ss_pred EEEEeeecCCceEEEeecCceeeeeeE-EEEcCCCCEEEEEeC-CC----cEEEEeCCCceeeEEeeccccceEEEEEcc
Q psy4754 181 RCRLFDLRADKEVACYKKDSILFGATS-VDFSVSGRLLFAGYN-DY----TINVWDSLKCCRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 181 ~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~s~~g~~l~sg~~-d~----~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp 254 (304)
+++.++. .++.+..+..+. ..+.. ++|+|+|+.|+.++. ++ .|..||..++. +..+ .|...+.+++|||
T Consensus 336 ~l~~~~~-~~~~~~~l~~~~--~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l-~~~~~~~~~~~sp 410 (706)
T 2z3z_A 336 HLYLYDT-TGRLIRQVTKGE--WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL-TPESGMHRTQLSP 410 (706)
T ss_dssp EEEEEET-TSCEEEECCCSS--SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES-CCSSSEEEEEECT
T ss_pred EEEEEEC-CCCEEEecCCCC--eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec-cCCCceEEEEECC
Confidence 5444443 344444443332 23444 789999998766544 44 56666766654 3334 3777899999999
Q ss_pred CCCEEEEeecC----Ceeeeccccccc
Q psy4754 255 DGTAFSSGSWD----TTLRDEESKNRY 277 (304)
Q Consensus 255 ~g~~lasgs~D----~~i~~~~~~~~~ 277 (304)
||++|+....+ ..|.+|+...+.
T Consensus 411 dg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 411 DGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 99998876544 459999876544
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=9.1e-24 Score=178.57 Aligned_cols=225 Identities=14% Similarity=0.112 Sum_probs=163.6
Q ss_pred EeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCC-CeeEeEEeccceeeceeeeE
Q psy4754 43 AGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA-DKEVACYKKDSILFGATSVD 121 (304)
Q Consensus 43 tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~-~~~~~~~~~~~~~~~~~~~~ 121 (304)
+++.|++|++||+.+++.. .+..|...|.+++|+|++++|++++ ++. +++||+.. .+........ ....+.++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~--i~~~d~~~~~~~~~~~~~~-~~~~~~~~~ 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGL--LYRLSLAGDPSPEKVDTGF-ATICNNDHG 91 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTE--EEEEESSSCCSCEECCCTT-CCCBCSCCE
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCe--EEEEeCCCCCCceEecccc-ccccccceE
Confidence 5578999999999888755 4556889999999999999999987 666 57999987 6554433322 112456789
Q ss_pred EcCCCCEEEEEe--CCCeEEEe--cCCccccceeccCcccceeEEEEcCCCcEEE-EeecCCceEEEEeeecCCceEEEe
Q psy4754 122 FSVSGRLLFAGY--NDYTINVW--DSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADKEVACY 196 (304)
Q Consensus 122 ~s~~~~~l~sg~--~dg~i~iw--d~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~d~~i~i~~~d~~~~~~~~~~ 196 (304)
|+|++++++++. .++...+| +..+.. ...+..+ ..+..++|+|+++.++ +++.|+.+.++.++..+.+.. .+
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~-~~ 168 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET-RL 168 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE-EC
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce-Ec
Confidence 999999999988 33445555 444433 3333333 3588899999999877 777888865444444444332 22
Q ss_pred ecCceeeeeeEEEEcCCCCEEEEEe-CCCcEEEEeCC-CceeeEEeeccccceEEEEEccCCCEEEEeecC---------
Q psy4754 197 KKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSL-KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD--------- 265 (304)
Q Consensus 197 ~~~~~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd~~-~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D--------- 265 (304)
.... ..+.+++|+|+|++|+.++ .++.+++|++. .+..+..+..|...+.+++|+|+|++|+.++.|
T Consensus 169 ~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 246 (297)
T 2ojh_A 169 THGE--GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRD 246 (297)
T ss_dssp CCSS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred ccCC--CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccccc
Confidence 2221 3468899999999888766 58899999875 455677788888899999999999999998876
Q ss_pred --Ceeeeccccccc
Q psy4754 266 --TTLRDEESKNRY 277 (304)
Q Consensus 266 --~~i~~~~~~~~~ 277 (304)
..|.+|++..+.
T Consensus 247 ~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 247 LDVRVQLMDMDGGN 260 (297)
T ss_dssp EEEEEEEEETTSCS
T ss_pred CceEEEEEecCCCC
Confidence 568899876654
No 145
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=1.4e-22 Score=175.89 Aligned_cols=237 Identities=11% Similarity=0.035 Sum_probs=176.0
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCc-CcEEEEEECCCCCeEE-EEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 31 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-NRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 31 ~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~d~~~l~-sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
.+++++++.++++++.+++|.+||+.+++.+..+..+. ..+..++|+|+++.++ ++..++.+ .+||+.+.+....+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i--~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI--YGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE--EEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcE--EEEeCCCCcEEEEE
Confidence 45778889999999999999999999998887776543 2567899999998654 55567774 78999888776655
Q ss_pred eccce----eeceeeeEEcCCCCEEEEEeCC------------CeEEEecCCcccccee--ccCcccceeEEEEcCCCcE
Q psy4754 109 KKDSI----LFGATSVDFSVSGRLLFAGYND------------YTINVWDSLKCCRVNH--LMGHENRVSCLQVSPDGTA 170 (304)
Q Consensus 109 ~~~~~----~~~~~~~~~s~~~~~l~sg~~d------------g~i~iwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~ 170 (304)
..... ...+..+.|+|+++++++++.+ +.|.+||+.+++.... ...+...+.+++|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS- 160 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-
T ss_pred EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-
Confidence 43211 1225678999999999998865 8999999877443221 123344688999999999
Q ss_pred EEEeecCCceEEEEeeecCCceEEEeecCc-------------------------e------------------------
Q psy4754 171 FSSGSWDTTLRCRLFDLRADKEVACYKKDS-------------------------I------------------------ 201 (304)
Q Consensus 171 las~s~d~~i~i~~~d~~~~~~~~~~~~~~-------------------------~------------------------ 201 (304)
++.++.+ +++||..+++.+..+.... .
T Consensus 161 l~~~~~~----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 161 LYVAGPD----IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp EEEESSS----EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred EEEccCc----EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 5554433 4689988877655543221 0
Q ss_pred -----------------eeeeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEee
Q psy4754 202 -----------------LFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 202 -----------------~~~~~~~~~s~-~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs 263 (304)
...+..++++| +|++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|+|++|++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~ 313 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGG 313 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEES
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEec
Confidence 00234667889 99999888 78999999999888777654 34578999999999888888
Q ss_pred cCCeeeeccccccc
Q psy4754 264 WDTTLRDEESKNRY 277 (304)
Q Consensus 264 ~D~~i~~~~~~~~~ 277 (304)
.|+.|++|+.....
T Consensus 314 ~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 314 TFNDLAVFNPDTLE 327 (349)
T ss_dssp BSSEEEEEETTTTE
T ss_pred CCCeEEEEeccccc
Confidence 89999999986543
No 146
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=4.4e-21 Score=168.12 Aligned_cols=263 Identities=11% Similarity=0.100 Sum_probs=173.9
Q ss_pred CceeEEeecc--ccceEeeeeccccccceeEEEEcCCCCEEEEeeCC----CcEEEEeCCC--ce--eeeeecCCcCcEE
Q psy4754 3 KNHCRLFDLR--ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND----YTINVWDSLK--CC--RVNHLMGHENRVS 72 (304)
Q Consensus 3 ~~~v~~wd~~--~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d----g~v~iwd~~~--~~--~~~~~~~h~~~V~ 72 (304)
++.|.+|++. +++....... +......++|+|+|++|++++.+ +.|.+|++.. ++ .+.....+.....
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~ 103 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC 103 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE
T ss_pred CCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE
Confidence 5678888764 4544332222 34447889999999999888876 8999998754 43 3344444556677
Q ss_pred EEEECCCCCeEEEEe-CCCceEEEEeeeCCCeeEeEE----eccc--------eeeceeeeEEcCCCCEEEEEe-CCCeE
Q psy4754 73 CLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACY----KKDS--------ILFGATSVDFSVSGRLLFAGY-NDYTI 138 (304)
Q Consensus 73 ~l~~s~d~~~l~sgs-~D~~i~~~~wd~~~~~~~~~~----~~~~--------~~~~~~~~~~s~~~~~l~sg~-~dg~i 138 (304)
.+++ ++++|++++ .++++ .+|++.....+... .... ....+.+++|+|+++++++++ .++.|
T Consensus 104 ~~~~--dg~~l~~~~~~~~~v--~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v 179 (361)
T 3scy_A 104 YLTT--NGKNIVTANYSGGSI--TVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQI 179 (361)
T ss_dssp EEEE--CSSEEEEEETTTTEE--EEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEE--CCCEEEEEECCCCEE--EEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEE
Confidence 7888 788777766 46664 78998654332111 1000 011235789999999776655 48999
Q ss_pred EEecCCcccc------c-------eeccCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCce--EEEeecC-ce
Q psy4754 139 NVWDSLKCCR------V-------NHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKE--VACYKKD-SI 201 (304)
Q Consensus 139 ~iwd~~~~~~------~-------~~~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~--~~~~~~~-~~ 201 (304)
.+|++..... + .....+...+..++|+||++++++++ .++.+ .+|++.+++. +...... ..
T Consensus 180 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v--~v~~~~~g~~~~~~~~~~~~~~ 257 (361)
T 3scy_A 180 HKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV--IAFRYADGMLDEIQTVAADTVN 257 (361)
T ss_dssp EEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE--EEEEEETTEEEEEEEEESCSSC
T ss_pred EEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE--EEEEecCCceEEeEEEecCCCC
Confidence 9998654331 1 11223445678999999999877766 57774 6899886543 2222211 11
Q ss_pred eeeeeEEEEcCCCCEEEEEeCC--CcEEEEeCC--Cce--eeEEeeccccceEEEEEccCCCEEEEee-cCCeeeecccc
Q psy4754 202 LFGATSVDFSVSGRLLFAGYND--YTINVWDSL--KCC--RVNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRDEESK 274 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~sg~~d--~~i~iwd~~--~~~--~~~~~~~h~~~i~~l~~sp~g~~lasgs-~D~~i~~~~~~ 274 (304)
...+..++|+|+|++|+++..+ +.|.+|++. ++. .+..+.. ...+.+++|+|||++|++++ .++.|++|+.+
T Consensus 258 ~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 258 AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 1234689999999998776654 889999985 333 3444444 45788999999999888877 67899997554
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=2.6e-22 Score=173.47 Aligned_cols=236 Identities=13% Similarity=0.087 Sum_probs=167.4
Q ss_pred EEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeC-CCceEEEEeeeCCCee-EeEEe
Q psy4754 33 DFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKE-VACYK 109 (304)
Q Consensus 33 ~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~-D~~i~~~~wd~~~~~~-~~~~~ 109 (304)
.|.+++. .+++++.+++|.+||..+++....+..+...+ .++|+|++++|+.++. ++. +++||..+++. .....
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~--i~~~d~~~~~~~~~~~~ 80 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQT--LVQIETQLEPPKVVAIQ 80 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCE--EEEEECSSSSCEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCe--EEEEECCCCceeEEecc
Confidence 4555544 57889999999999999998887777666667 9999999997776665 666 57899987765 44443
Q ss_pred ccceeeceee-eEEcCCCCEEEEEeCCC---eEEEecCCccccceeccCcccceeEEEEcCCCcEEE-EeecCCc-eEEE
Q psy4754 110 KDSILFGATS-VDFSVSGRLLFAGYNDY---TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSWDTT-LRCR 183 (304)
Q Consensus 110 ~~~~~~~~~~-~~~s~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~d~~-i~i~ 183 (304)
... .... ++|+|++++++++..++ .|.+||+.+.+.+..+..+ ..+.+++|+|+++.++ +...++. + .
T Consensus 81 ~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i--~ 154 (331)
T 3u4y_A 81 EGQ---SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTV--R 154 (331)
T ss_dssp ECS---SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEE--E
T ss_pred cCC---CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceE--E
Confidence 322 2344 89999999999555443 8999999887766655443 4568999999998555 4455465 5 5
Q ss_pred EeeecCCceEEEee--cCceeeeeeEEEEcCCCCEEEE-EeCCCcEEEEeCCCcee---eEEeeccccceEEEEEccCCC
Q psy4754 184 LFDLRADKEVACYK--KDSILFGATSVDFSVSGRLLFA-GYNDYTINVWDSLKCCR---VNHLMGHENRVSCLQVSPDGT 257 (304)
Q Consensus 184 ~~d~~~~~~~~~~~--~~~~~~~~~~~~~s~~g~~l~s-g~~d~~i~iwd~~~~~~---~~~~~~h~~~i~~l~~sp~g~ 257 (304)
+|++.....+.... .......+..++|+|+|+++++ +..++.|++||+.+++. +..+..+ ..+.+++|+|||+
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~ 233 (331)
T 3u4y_A 155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGS 233 (331)
T ss_dssp EEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSS
T ss_pred EEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCC
Confidence 78876533321111 0001123578999999996555 55688999999988877 7666644 6778999999999
Q ss_pred EEEE-eecCCeeeeccccccch
Q psy4754 258 AFSS-GSWDTTLRDEESKNRYM 278 (304)
Q Consensus 258 ~las-gs~D~~i~~~~~~~~~~ 278 (304)
+|+. ...++.|.+|+...+..
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEE
T ss_pred EEEEEEcCCCEEEEEECCCCce
Confidence 6654 44578899999866543
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=1.4e-22 Score=201.12 Aligned_cols=280 Identities=11% Similarity=0.057 Sum_probs=202.8
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCC-ceeeeeecCCcCcEEEEEECCCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK-CCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
+.+.++|....+.....+ ..+...+.++.|+++ .++++++.|++++||.... +...+.+..|. .+...+|+|||+
T Consensus 182 ~~~~~lw~~~~~~~~~~l--~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~ 257 (1045)
T 1k32_A 182 GTRGKIWIEVNSGAFKKI--VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGR 257 (1045)
T ss_dssp TTCCEEEEEEETTEEEEE--ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSS
T ss_pred CCcCCEEEECCCCCeEEC--cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCC
Confidence 456778865543333333 334455899999988 7777888999999998653 33445555554 356779999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccc---------eeeceeeeEEc-CCCCEEEEEeCCCeEEEecCCcccccee
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDS---------ILFGATSVDFS-VSGRLLFAGYNDYTINVWDSLKCCRVNH 151 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~---------~~~~~~~~~~s-~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 151 (304)
.|+.++ |+. +++||+.. ..+..+..+. ....+..+.|+ |+++++++++ ++.+.+|+..+... ..
T Consensus 258 ~la~~~-~~~--i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~-~~ 331 (1045)
T 1k32_A 258 RILFSK-GGS--IYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-LK 331 (1045)
T ss_dssp CEEEEE-TTE--EEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-EE
T ss_pred EEEEEe-CCE--EEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce-EE
Confidence 998875 777 47899843 3333332211 01135789999 9999998887 88999999876543 34
Q ss_pred ccCccc-ceeEEEEcCCCcEEEEeecCCceEEE-EeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEE
Q psy4754 152 LMGHEN-RVSCLQVSPDGTAFSSGSWDTTLRCR-LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 229 (304)
Q Consensus 152 ~~~h~~-~v~~v~~sp~~~~las~s~d~~i~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iw 229 (304)
+..|.. .+..++|+ |++.++.++.+.. ++ +||+.+.+... +..+ ...+..++|+|+|++|++++.++.|++|
T Consensus 332 ~~~~~~~~~~~~~~s-dg~~l~~~s~~~~--l~~~~d~~~~~~~~-l~~~--~~~~~~~~~SpDG~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 332 VPEPLRIRYVRRGGD-TKVAFIHGTREGD--FLGIYDYRTGKAEK-FEEN--LGNVFAMGVDRNGKFAVVANDRFEIMTV 405 (1045)
T ss_dssp CSCCSCEEEEEECSS-SEEEEEEEETTEE--EEEEEETTTCCEEE-CCCC--CCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccCCCcceEEeeeEc-CCCeEEEEECCCc--eEEEEECCCCCceE-ecCC--ccceeeeEECCCCCEEEEECCCCeEEEE
Confidence 567777 89999999 9999999887654 56 78887765432 2222 2356889999999999999999999999
Q ss_pred eCCCceeeEEeeccccceEEEEEccCCCEEEEeecCC----------eeeeccccccchhheeeccccCCc-eeEEEEEe
Q psy4754 230 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT----------TLRDEESKNRYMQYLLRSRITKPT-QGLTVYFQ 298 (304)
Q Consensus 230 d~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~----------~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 298 (304)
|+.+++......+|...+.+++|||||++|++++.+. .|++|+...+... .++.+. .-..+.|+
T Consensus 406 d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~-----~l~~~~~~~~~~~~s 480 (1045)
T 1k32_A 406 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-----AATTENSHDYAPAFD 480 (1045)
T ss_dssp ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-----ECSCSSSBEEEEEEC
T ss_pred ECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE-----EeeCCCcccCCceEc
Confidence 9998887776778999999999999999999988754 8999998664321 222222 23457788
Q ss_pred cCCcc
Q psy4754 299 DRGRS 303 (304)
Q Consensus 299 ~~~~~ 303 (304)
|+|+.
T Consensus 481 pdG~~ 485 (1045)
T 1k32_A 481 ADSKN 485 (1045)
T ss_dssp TTSCE
T ss_pred CCCCE
Confidence 88764
No 149
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=5.1e-22 Score=171.87 Aligned_cols=225 Identities=16% Similarity=0.181 Sum_probs=156.0
Q ss_pred EEEEeeCCCcEEEEeCC-Cc--eeeeeecCCcCcEEEEEECCCCCeEEEEeCC-CceEEEEeeeC--CCe--eEeEEecc
Q psy4754 40 LLFAGYNDYTINVWDSL-KC--CRVNHLMGHENRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLR--ADK--EVACYKKD 111 (304)
Q Consensus 40 ~l~tg~~dg~v~iwd~~-~~--~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D-~~i~~~~wd~~--~~~--~~~~~~~~ 111 (304)
++++++.|+.|++||+. ++ +.+.. ..|...+.+++|+|++++|++++.+ +.+ .+|++. .++ .+..+...
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRV--LAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEE--EEEEECTTTCCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeE--EEEEecCCCCceeeccccccC
Confidence 45565889999999985 33 33333 3467788999999999999988876 664 789987 333 22223222
Q ss_pred ceeeceeeeEEcCCCCEEEEEeC-CCeEEEecC---CccccceeccCcccceeEEEEcCCCcEEEEee-cCCceEEEEee
Q psy4754 112 SILFGATSVDFSVSGRLLFAGYN-DYTINVWDS---LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFD 186 (304)
Q Consensus 112 ~~~~~~~~~~~s~~~~~l~sg~~-dg~i~iwd~---~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d 186 (304)
. .+..++|+|+++++++++. ++.|.+||+ .+...+..+..+ ..+.+++|+|+++.+++++ .++.+ .+||
T Consensus 84 ~---~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v--~~~d 157 (343)
T 1ri6_A 84 G---SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRI--CLFT 157 (343)
T ss_dssp S---CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEE--EEEE
T ss_pred C---CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEE--EEEE
Confidence 1 4568899999998877665 889999998 333344444333 4588999999999887776 77775 6899
Q ss_pred ecC-CceEE----EeecCceeeeeeEEEEcCCCCEEEEE-eCCCcEEEEeCCC--cee--eEEee----cc--ccceEEE
Q psy4754 187 LRA-DKEVA----CYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLK--CCR--VNHLM----GH--ENRVSCL 250 (304)
Q Consensus 187 ~~~-~~~~~----~~~~~~~~~~~~~~~~s~~g~~l~sg-~~d~~i~iwd~~~--~~~--~~~~~----~h--~~~i~~l 250 (304)
+.+ ++... ...... ...+..++|+|+|++++++ ..++.|.+|++.. +.. +..+. ++ ...+.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTVE-GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp ECTTSCEEEEEEEEEECST-TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred ecCCCceeeecccccccCC-CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 987 44322 111111 1245789999999977655 4789999999843 322 22222 11 2357789
Q ss_pred EEccCCCEEE-EeecCCeeeecccc
Q psy4754 251 QVSPDGTAFS-SGSWDTTLRDEESK 274 (304)
Q Consensus 251 ~~sp~g~~la-sgs~D~~i~~~~~~ 274 (304)
+|+|+|++|+ +++.|+.|++|++.
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCEEEEEecCCCEEEEEEEc
Confidence 9999998776 55579999999986
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=4.9e-23 Score=192.04 Aligned_cols=233 Identities=10% Similarity=-0.047 Sum_probs=168.0
Q ss_pred cceeEEEEcCCCCEEEEeeC-CCcEEEEeCCCceeeeeecCCc-CcEEEEEECCCCCeEEEEeC---CCceEEEEeee--
Q psy4754 27 FGATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCRVNHLMGHE-NRVSCLQVSPDGTAFSSGSW---DTTLRCRLFDL-- 99 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~-dg~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~d~~~l~sgs~---D~~i~~~~wd~-- 99 (304)
..|.+++|+|||+.||.++. ||+++||++.+++..+ +..|. ..|..++|+|| +.+++++. +...+++.++.
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 34899999999999998877 9999999986665544 44444 68999999999 78887765 44444444554
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCCE-EEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecC-
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGRL-LFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD- 177 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d- 177 (304)
... .. .+.... ......|+|+++. +++...++.+.+||+.+++.. .+..+.. .+++|+|||+.+++++.|
T Consensus 100 ~g~-~~-~l~~~~---~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~-~l~~~~~--~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 100 PGE-EQ-RLEAVK---PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR-ELARLPG--FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp TTC-CE-ECTTSC---SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE-EEEEESS--CEEEEEEETTEEEEEEEEE
T ss_pred CCc-cc-cccCCC---CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE-EeecCCC--ceEEECCCCCEEEEEEEcC
Confidence 222 22 222111 1234577888753 333344445559998766543 3333333 789999999999988876
Q ss_pred -CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC--cEEEEeCCCceeeEEeeccccceEEEE---
Q psy4754 178 -TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY--TINVWDSLKCCRVNHLMGHENRVSCLQ--- 251 (304)
Q Consensus 178 -~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~--~i~iwd~~~~~~~~~~~~h~~~i~~l~--- 251 (304)
+...+++||+.+++... +..+. ..+..++|+|||++|+++..++ .|++||..+++.. .+.+|...+..++
T Consensus 172 ~~~~~i~~~d~~~g~~~~-l~~~~--~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGGLRV-FDSGE--GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA 247 (582)
T ss_dssp TTEEEEEEEETTTCCCEE-ECCSS--CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred CCCeEEEEEcCCCCCceE-eecCC--CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence 21236799988776543 32222 2458899999999999888888 8999999888776 7778888888888
Q ss_pred -----EccCCCEEEEeecCCeeeeccc
Q psy4754 252 -----VSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 252 -----~sp~g~~lasgs~D~~i~~~~~ 273 (304)
|+|||..+++++.|+++++|+.
T Consensus 248 ~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999999999999999999987
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=3.2e-22 Score=198.54 Aligned_cols=254 Identities=10% Similarity=0.051 Sum_probs=191.0
Q ss_pred CceeEEeeccc-cceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC-----------CcCc
Q psy4754 3 KNHCRLFDLRA-DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-----------HENR 70 (304)
Q Consensus 3 ~~~v~~wd~~~-~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~-----------h~~~ 70 (304)
+++++||.... +.....+.. ...+.+.+|+|+|+.|+.+ .++.|.+||+... .+..+.+ |...
T Consensus 223 dg~~~l~~~~~~g~~~~~l~~---~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~ 297 (1045)
T 1k32_A 223 DGFGQIYSTDLDGKDLRKHTS---FTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPS 297 (1045)
T ss_dssp TSSCEEEEEETTSCSCEECCC---CCSSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGG
T ss_pred cCceEEEEEeCCCCcceEecC---CCCcceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccc
Confidence 46788887654 222222211 1136678999999988887 5899999998443 3334444 4457
Q ss_pred EEEEEEC-CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEE-EecCCcccc
Q psy4754 71 VSCLQVS-PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTIN-VWDSLKCCR 148 (304)
Q Consensus 71 V~~l~~s-~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~-iwd~~~~~~ 148 (304)
+.+++|+ |||+.|++++ ++. +++|++....... +..+.. ..+..+.|+ +++.++.++.+..+. +||+.+...
T Consensus 298 v~~~~~S~pdG~~la~~~-~~~--i~~~~~~~~~~~~-~~~~~~-~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~ 371 (1045)
T 1k32_A 298 KFAEDFSPLDGDLIAFVS-RGQ--AFIQDVSGTYVLK-VPEPLR-IRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA 371 (1045)
T ss_dssp GGEEEEEECGGGCEEEEE-TTE--EEEECTTSSBEEE-CSCCSC-EEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE
T ss_pred cceeeecCCCCCEEEEEE-cCE--EEEEcCCCCceEE-ccCCCc-ceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc
Confidence 8999999 9999999888 555 4789987665432 222111 135678899 999999998888888 999876543
Q ss_pred ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC----
Q psy4754 149 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY---- 224 (304)
Q Consensus 149 ~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~---- 224 (304)
..+.+|...+..++|+|||+.+++++.++.+ ++||+.+++.......+. ..+..++|+|||++|++++.++
T Consensus 372 -~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v--~~~d~~tg~~~~~~~~~~--~~v~~~~~SpDG~~la~~~~~~~~~~ 446 (1045)
T 1k32_A 372 -EKFEENLGNVFAMGVDRNGKFAVVANDRFEI--MTVDLETGKPTVIERSRE--AMITDFTISDNSRFIAYGFPLKHGET 446 (1045)
T ss_dssp -EECCCCCCSEEEEEECTTSSEEEEEETTSEE--EEEETTTCCEEEEEECSS--SCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred -eEecCCccceeeeEECCCCCEEEEECCCCeE--EEEECCCCceEEeccCCC--CCccceEECCCCCeEEEEecCccccc
Confidence 3444788899999999999999999999875 699999887665553332 2457889999999998877644
Q ss_pred ------cEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 225 ------TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 225 ------~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
.|++||+.+++ +..+..|...+.+++|+|||++|+.++.+...+.|+.
T Consensus 447 ~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 447 DGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp CSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred cCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 89999998876 6678889889999999999999999998888777753
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=2.5e-22 Score=191.70 Aligned_cols=264 Identities=12% Similarity=0.035 Sum_probs=183.0
Q ss_pred CCceeEEeeccccceEeeeecccc-ccceeEEEEcCCCCEEEEeeC---------CCcEEEEeCCCceee--eeecCCcC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSI-LFGATSVDFSVSGRLLFAGYN---------DYTINVWDSLKCCRV--NHLMGHEN 69 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~-~~~i~~~~~~~~g~~l~tg~~---------dg~v~iwd~~~~~~~--~~~~~h~~ 69 (304)
.|++|++||+.++++......... ...+.+++|||||++|+.++. +++|++||+.+++.+ ..+ ..
T Consensus 34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~ 110 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PR 110 (719)
T ss_dssp TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CS
T ss_pred CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Cc
Confidence 478999999999987655442211 113889999999999998876 799999999988763 223 25
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccce--ee--------------ceeeeEEcCCCCEEEEEe
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI--LF--------------GATSVDFSVSGRLLFAGY 133 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~--~~--------------~~~~~~~s~~~~~l~sg~ 133 (304)
.+..++|||||+.|+.++ |+. +++||+.+++.......... .. ....+.|||||++|++++
T Consensus 111 ~~~~~~~SPDG~~la~~~-~~~--i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~ 187 (719)
T 1z68_A 111 PIQYLCWSPVGSKLAYVY-QNN--IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE 187 (719)
T ss_dssp SBCCEEECSSTTCEEEEE-TTE--EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred ccccceECCCCCEEEEEE-CCe--EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence 688899999999999986 666 57999987655432111100 00 014789999999999987
Q ss_pred CCC----------------------------------eEEEecCCccccc--------eeccCcccceeEEEEcCCCcEE
Q psy4754 134 NDY----------------------------------TINVWDSLKCCRV--------NHLMGHENRVSCLQVSPDGTAF 171 (304)
Q Consensus 134 ~dg----------------------------------~i~iwd~~~~~~~--------~~~~~h~~~v~~v~~sp~~~~l 171 (304)
.|. .|++||+.+++.. ..+.+|...+..++|+||++++
T Consensus 188 ~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~ 267 (719)
T 1z68_A 188 FNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVC 267 (719)
T ss_dssp EECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEE
T ss_pred ECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEE
Confidence 542 7889998876542 2244688899999999998877
Q ss_pred EEee--cCCceEEEEee----ecCCceEEEee----cCceeeeee-----EEEEcCCCCEEEE--EeCCC--cEEEEeCC
Q psy4754 172 SSGS--WDTTLRCRLFD----LRADKEVACYK----KDSILFGAT-----SVDFSVSGRLLFA--GYNDY--TINVWDSL 232 (304)
Q Consensus 172 as~s--~d~~i~i~~~d----~~~~~~~~~~~----~~~~~~~~~-----~~~~s~~g~~l~s--g~~d~--~i~iwd~~ 232 (304)
++.. .+....+++|| +.+++...... .+. ..+. .+.|+|||+.|+. ...++ .|.+||..
T Consensus 268 ~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~ 345 (719)
T 1z68_A 268 LQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT--GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDT 345 (719)
T ss_dssp EEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSC
T ss_pred EEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECC
Confidence 7644 33445568899 66655433221 111 1122 6789999996554 44555 46667876
Q ss_pred CceeeEEeeccccceEEEEEccCCCEEEEeecC-----Ceeeeccccc
Q psy4754 233 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD-----TTLRDEESKN 275 (304)
Q Consensus 233 ~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D-----~~i~~~~~~~ 275 (304)
+++ ...+..+...+..+.++ +++.|+..+.+ +.+++|....
T Consensus 346 ~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 346 VEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp STT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred CCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 654 45566666678888888 88877766654 7889997643
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=5.1e-22 Score=178.84 Aligned_cols=201 Identities=15% Similarity=0.104 Sum_probs=149.1
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce----------eee-----eecCCcCcEEEEEECCCCCeEE----EEeC
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCC----------RVN-----HLMGHENRVSCLQVSPDGTAFS----SGSW 88 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~----------~~~-----~~~~h~~~V~~l~~s~d~~~l~----sgs~ 88 (304)
.++.+++++++.++++|+.|+ +++|+..... .+. ....|...|.+++|+|++++|+ +|+.
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 478899999999999999998 9998853210 000 1123567899999999999999 8889
Q ss_pred CCceEEEEeeeCCC--------eeEeEEec-cceeeceeeeEEcCC-CCEEEEEeCCCeEEEecCCccccceeccCcccc
Q psy4754 89 DTTLRCRLFDLRAD--------KEVACYKK-DSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 158 (304)
Q Consensus 89 D~~i~~~~wd~~~~--------~~~~~~~~-~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 158 (304)
|+++ ++||+.+. +.+..+.. ..+...+.+++|+|+ +.++++++.||+|++||+++........+|...
T Consensus 117 d~~v--~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 117 GSII--AFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp EEEE--EEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CceE--EEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 9985 78998653 22111111 111234789999998 789999999999999999887666666789999
Q ss_pred eeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC-----ceeeeeeEEEEcCCCCEEEE-EeCCC------cE
Q psy4754 159 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD-----SILFGATSVDFSVSGRLLFA-GYNDY------TI 226 (304)
Q Consensus 159 v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~s~~g~~l~s-g~~d~------~i 226 (304)
|.+++|+|+++.|++|+.|+++ ++||.+ ++....+..+ .....+.+++|++++.++++ ...+| .+
T Consensus 195 v~~v~wspdg~~lasgs~dg~v--~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTV--VQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCE--EEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcE--EEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 9999999999999999999996 689998 3444433222 11236789999999988866 33443 38
Q ss_pred EEEeCCCc
Q psy4754 227 NVWDSLKC 234 (304)
Q Consensus 227 ~iwd~~~~ 234 (304)
++|++.+.
T Consensus 272 ~i~~l~~~ 279 (434)
T 2oit_A 272 VMALLPKK 279 (434)
T ss_dssp EEEECCCT
T ss_pred EEEEeccC
Confidence 89998754
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=4.6e-21 Score=178.69 Aligned_cols=248 Identities=13% Similarity=0.033 Sum_probs=177.1
Q ss_pred CceeEEeeccccceEeeeeccccc-cceeEEEEcCCCCEEEEeeC---CCcEEEEeCCC---ceeeeeecCCcCcEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSIL-FGATSVDFSVSGRLLFAGYN---DYTINVWDSLK---CCRVNHLMGHENRVSCLQ 75 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~-~~i~~~~~~~~g~~l~tg~~---dg~v~iwd~~~---~~~~~~~~~h~~~V~~l~ 75 (304)
|++++||++.+++.... ..+. ..+.+++|+|| +++++++. +...++|.+.. +... .+..+ ..+...+
T Consensus 43 ~g~~~lw~~~~g~~~~l---t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~ 116 (582)
T 3o4h_A 43 EGSVNAYLYDGGETVKL---NREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILS 116 (582)
T ss_dssp TTEEEEEEEETTEEEEC---CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEE
T ss_pred CCceeEEEEcCCCcEee---ecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeee
Confidence 78899999977755332 2222 35899999999 88887775 55667765432 2222 23222 2334568
Q ss_pred ECCCCC--eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC----CeEEEecCCccccc
Q psy4754 76 VSPDGT--AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND----YTINVWDSLKCCRV 149 (304)
Q Consensus 76 ~s~d~~--~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d----g~i~iwd~~~~~~~ 149 (304)
|+||++ .+++++.|+. .+||+.+++......... .++.|+|||+++++++.+ +.|++||+.+++.
T Consensus 117 ~s~dg~~~~~~s~~~~~~---~l~d~~~g~~~~l~~~~~-----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~- 187 (582)
T 3o4h_A 117 GVDTGEAVVFTGATEDRV---ALYALDGGGLRELARLPG-----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL- 187 (582)
T ss_dssp EEECSSCEEEEEECSSCE---EEEEEETTEEEEEEEESS-----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-
T ss_pred eCCCCCeEEEEecCCCCc---eEEEccCCcEEEeecCCC-----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-
Confidence 888875 4555555654 489998776544333221 578899999999988776 7899999877653
Q ss_pred eeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEE--------EcCCCCEEEEEe
Q psy4754 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD--------FSVSGRLLFAGY 221 (304)
Q Consensus 150 ~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--------~s~~g~~l~sg~ 221 (304)
..+..|...+..++|+|||+.++++..++...+++||+.+++.. ....+. ..+..++ |+|||.++++++
T Consensus 188 ~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~spdg~~~~~~~ 264 (582)
T 3o4h_A 188 RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KDFSSYRPTAITWLGYLPDGRLAVVAR 264 (582)
T ss_dssp EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cChhhhhhccccceeEcCCCcEEEEEE
Confidence 46778888999999999999999888888545689999887765 433322 1233344 999999999999
Q ss_pred CCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCe---eeecccc
Q psy4754 222 NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRDEESK 274 (304)
Q Consensus 222 ~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~---i~~~~~~ 274 (304)
.|+++++|++ ++.+. .+.+.|.+++|+ +++.+++++.+.+ +.+++..
T Consensus 265 ~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 265 REGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp ETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred cCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 9999999998 55443 345789999999 9999999888855 5566543
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=8.9e-21 Score=163.61 Aligned_cols=249 Identities=12% Similarity=0.033 Sum_probs=176.2
Q ss_pred CEEEEeeCCCcEEEEeCCCceeeeeecCCc-C-cEEEEEECCCCCeE-EEEeCCCceEEEEeeeCCCeeEeEEeccc---
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRVNHLMGHE-N-RVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYKKDS--- 112 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~-~-~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~~~~~~~~~~~~~--- 112 (304)
+++++++.+++|.+||+.+++.+..+.... . .+..++|+|+++.+ ++++.++. +++||+.+.+.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~--v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSES--LVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTE--EEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCe--EEEEECCCCCeEeeEEcCCccc
Confidence 578999999999999999998887765322 2 47889999999865 45555667 4789998887766554321
Q ss_pred eeeceeeeEEcCCCCEEEEEe------------CCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 113 ILFGATSVDFSVSGRLLFAGY------------NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 113 ~~~~~~~~~~s~~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
....+..++|+|++++++++. .++.|.+||+.+.+.+..+.. ...+.+++|+|+++.++++ ++.+
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i 156 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDL 156 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSE
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeE
Confidence 011345789999999998886 579999999987766555443 3567889999999988877 4664
Q ss_pred EEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-C-----------------------cEEEEeCCCcee
Q psy4754 181 RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-Y-----------------------TINVWDSLKCCR 236 (304)
Q Consensus 181 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-~-----------------------~i~iwd~~~~~~ 236 (304)
.+||+.+++....+...... ..+.|+|+|++++....+ + .|.+||..+++.
T Consensus 157 --~~~d~~~~~~~~~~~~~~~~---~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 157 --HVMDPEAGTLVEDKPIQSWE---AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp --EEEETTTTEEEEEECSTTTT---TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred --EEEECCCCcEeeeeeccccC---CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 68999988776655433211 122688998876554432 2 468999988765
Q ss_pred e-EEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheeeccccCCceeEEEEEecCCcc
Q psy4754 237 V-NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 237 ~-~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
. ..+..|...+.+++|+|||++++++ |+.|++|++..+...... ..+.....+.++|+|+.
T Consensus 232 ~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~----~~~~~~~~~~~s~dg~~ 293 (337)
T 1pby_B 232 AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV----PLPHSYYSVNVSTDGST 293 (337)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE----ECSSCCCEEEECTTSCE
T ss_pred eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee----cCCCceeeEEECCCCCE
Confidence 4 2244566788999999999999988 799999998654322221 12223445677777653
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=2e-20 Score=162.28 Aligned_cols=226 Identities=16% Similarity=0.100 Sum_probs=165.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEE-EEeeCCCcEEEEeCCCceeeeeecCC------cCcEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGH------ENRVSCL 74 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l-~tg~~dg~v~iwd~~~~~~~~~~~~h------~~~V~~l 74 (304)
++++|++||+.+++....+.... ...+..++|+|+|+.+ +++..++.|.+||+.+++....+..+ ...+..+
T Consensus 19 ~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~ 97 (349)
T 1jmx_B 19 YPNNLHVVDVASDTVYKSCVMPD-KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSF 97 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEECSS-CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCE
T ss_pred CCCeEEEEECCCCcEEEEEecCC-CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccce
Confidence 47899999999998776655332 1247889999999855 56667899999999998877666532 2337789
Q ss_pred EECCCCCeEEEEeCC------------CceEEEEeeeCCCee---EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEE
Q psy4754 75 QVSPDGTAFSSGSWD------------TTLRCRLFDLRADKE---VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTIN 139 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D------------~~i~~~~wd~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~ 139 (304)
+|+|||++|++++.+ +. +.+||+.+++. +..+... ..+.+++|+|+++ ++.++ +.|.
T Consensus 98 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~-l~~~~--~~i~ 169 (349)
T 1jmx_B 98 AISPDGKEVYATVNPTQRLNDHYVVKPPR--LEVFSTADGLEAKPVRTFPMP---RQVYLMRAADDGS-LYVAG--PDIY 169 (349)
T ss_dssp EECTTSSEEEEEEEEEEECSSCEEECCCE--EEEEEGGGGGGBCCSEEEECC---SSCCCEEECTTSC-EEEES--SSEE
T ss_pred EECCCCCEEEEEcccccccccccccCCCe--EEEEECCCccccceeeeccCC---CcccceeECCCCc-EEEcc--CcEE
Confidence 999999999988865 65 57899876332 2222222 1356788999999 66554 3499
Q ss_pred EecCCccccceeccCcc---------------------------------------------------------------
Q psy4754 140 VWDSLKCCRVNHLMGHE--------------------------------------------------------------- 156 (304)
Q Consensus 140 iwd~~~~~~~~~~~~h~--------------------------------------------------------------- 156 (304)
+||..+++.+..+..+.
T Consensus 170 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
T 1jmx_B 170 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE 249 (349)
T ss_dssp EECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE
T ss_pred EEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc
Confidence 99988766544332211
Q ss_pred -----cceeEEEEcC-CCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 157 -----NRVSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 157 -----~~v~~v~~sp-~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
..+..++|+| +++.++++ ++.+ .+||+.+.+.+..+.... .+..++|+|+|++|++++.++.|++||
T Consensus 250 ~~~~~~~~~~~~~sp~dg~~l~~~--~~~v--~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 250 FADLTELYFTGLRSPKDPNQIYGV--LNRL--AKYDLKQRKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFN 322 (349)
T ss_dssp EEECSSCEEEEEECSSCTTEEEEE--ESEE--EEEETTTTEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred cccCCCcceeeEecCCCCCEEEEE--cCeE--EEEECccCeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEe
Confidence 1345677889 99998887 6664 689999887766665432 357899999999988888889999999
Q ss_pred CCCceeeEEeecc
Q psy4754 231 SLKCCRVNHLMGH 243 (304)
Q Consensus 231 ~~~~~~~~~~~~h 243 (304)
..+++.+..+..+
T Consensus 323 ~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 323 PDTLEKVKNIKLP 335 (349)
T ss_dssp TTTTEEEEEEECS
T ss_pred ccccceeeeeecC
Confidence 9998888776544
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.88 E-value=3.2e-20 Score=163.22 Aligned_cols=267 Identities=9% Similarity=-0.021 Sum_probs=172.9
Q ss_pred ceeEEeec--cccceEeeeecc-ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCC-Cceeeeeec--CCcCcEEEEEEC
Q psy4754 4 NHCRLFDL--RADKEVACYKKD-SILFGATSVDFSVSGRLLFAGYNDYTINVWDSL-KCCRVNHLM--GHENRVSCLQVS 77 (304)
Q Consensus 4 ~~v~~wd~--~~~~~~~~~~~~-~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~-~~~~~~~~~--~h~~~V~~l~~s 77 (304)
+.|.+|++ .+++........ .....+..++|+|+|++|++++.+ .|.+|++. +++...... .+ +.+..++|+
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~s 91 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDAD 91 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTT
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEEC
Confidence 35777664 455432211111 112247889999999999988888 99999986 676543222 11 234568999
Q ss_pred CCCCe--EEEEe-------------CCCceEEEEeeeCC-CeeEeEEec--cceeeceeeeEEcCCCCEEEEEeC-CCeE
Q psy4754 78 PDGTA--FSSGS-------------WDTTLRCRLFDLRA-DKEVACYKK--DSILFGATSVDFSVSGRLLFAGYN-DYTI 138 (304)
Q Consensus 78 ~d~~~--l~sgs-------------~D~~i~~~~wd~~~-~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~sg~~-dg~i 138 (304)
|||++ ++++. .++++ .+|++.. ++....... ......+..++|+|++++++++.. ++.|
T Consensus 92 pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v--~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v 169 (365)
T 1jof_A 92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYG--NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKL 169 (365)
T ss_dssp SCCEEEEEEECSSTTCCEEEEEESSSCCEE--EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCCCEEEEEEecCCcceeccceeecCCceE--EEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEE
Confidence 99994 55553 57775 6899863 433322221 001123578999999998887764 6899
Q ss_pred EEecCC-cccc--ceecc--CcccceeEEEEcCCCcEEEEeec-CCceEEEEeeec--CCceE---EEeec---Cc-eee
Q psy4754 139 NVWDSL-KCCR--VNHLM--GHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLR--ADKEV---ACYKK---DS-ILF 203 (304)
Q Consensus 139 ~iwd~~-~~~~--~~~~~--~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~--~~~~~---~~~~~---~~-~~~ 203 (304)
.+||+. +++. +..+. .|...+..++|+|||+++++++. ++.+ .+|++. +++.. ..+.. .. ...
T Consensus 170 ~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v--~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 247 (365)
T 1jof_A 170 WTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI--CEYVIDPATHMPVYTHHSFPLIPPGIPDRD 247 (365)
T ss_dssp EEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEE--EEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred EEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeE--EEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence 999987 4432 22222 24567899999999998887775 5665 466553 44432 11211 10 001
Q ss_pred -------eeeEEE-EcCCCCEEEEEeCC-C-----cEEEEeCC-CceeeE---EeeccccceEEEEEcc---CCCEEEEe
Q psy4754 204 -------GATSVD-FSVSGRLLFAGYND-Y-----TINVWDSL-KCCRVN---HLMGHENRVSCLQVSP---DGTAFSSG 262 (304)
Q Consensus 204 -------~~~~~~-~s~~g~~l~sg~~d-~-----~i~iwd~~-~~~~~~---~~~~h~~~i~~l~~sp---~g~~lasg 262 (304)
.+..++ |+|||++|+++..+ . +|.+|++. +++... ....+...+..++|+| ||++|+++
T Consensus 248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~ 327 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT 327 (365)
T ss_dssp TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEE
Confidence 367899 99999988776543 2 89999985 454332 1333555677899999 89999988
Q ss_pred ecC-Ceeeecccccc
Q psy4754 263 SWD-TTLRDEESKNR 276 (304)
Q Consensus 263 s~D-~~i~~~~~~~~ 276 (304)
+.+ ++|++|+.+.+
T Consensus 328 ~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 328 DDQEGWLEIYRWKDE 342 (365)
T ss_dssp CSSSCEEEEEEEETT
T ss_pred EcCCCeEEEEEEchh
Confidence 765 89999988765
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=1.8e-19 Score=156.89 Aligned_cols=251 Identities=12% Similarity=0.048 Sum_probs=156.0
Q ss_pred CCCcEEEEeCC--Cceeee-eecCCcCcEEEEEECCCCCeEEEEeC---CCceEEEEeeeCCCeeEeEEeccceeeceee
Q psy4754 46 NDYTINVWDSL--KCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSW---DTTLRCRLFDLRADKEVACYKKDSILFGATS 119 (304)
Q Consensus 46 ~dg~v~iwd~~--~~~~~~-~~~~h~~~V~~l~~s~d~~~l~sgs~---D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~ 119 (304)
.++.|.+|++. +++... ....+...+..++|+|||+ |++++. ++. +++||+..++.............+..
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~--v~~~~~~~g~~~~~~~~~~~~~~p~~ 90 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGG--IAAWQIDGQTAHKLNTVVAPGTPPAY 90 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEE--EEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCce--EEEEEecCCcEEEeeeeecCCCCCEE
Confidence 45667777654 454332 2334556677899999999 555544 455 57899966543221111111223567
Q ss_pred eEEcCCCCEEEEEe-CCCeEEEecCCcc---ccceeccC---------cccceeEEEEcCCCcEEEEeecCCceEEEEee
Q psy4754 120 VDFSVSGRLLFAGY-NDYTINVWDSLKC---CRVNHLMG---------HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186 (304)
Q Consensus 120 ~~~s~~~~~l~sg~-~dg~i~iwd~~~~---~~~~~~~~---------h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d 186 (304)
++|+|+++++++++ .++.|.+|++... ..+..+.. +...+.+++|+|+++.+++...++.+ ++|+
T Consensus 91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v--~~~~ 168 (347)
T 3hfq_A 91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKV--YVYN 168 (347)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEE--EEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEE--EEEE
Confidence 89999999988887 6899999998532 22222211 12347889999999966666667764 6899
Q ss_pred ec-CCceEEE--eecCceeeeeeEEEEcCCCCEEEE-EeCCCcEEEEeCCC--cee--eEEeeccc------cceEEEEE
Q psy4754 187 LR-ADKEVAC--YKKDSILFGATSVDFSVSGRLLFA-GYNDYTINVWDSLK--CCR--VNHLMGHE------NRVSCLQV 252 (304)
Q Consensus 187 ~~-~~~~~~~--~~~~~~~~~~~~~~~s~~g~~l~s-g~~d~~i~iwd~~~--~~~--~~~~~~h~------~~i~~l~~ 252 (304)
+. +++.... +.... ...+..++|+|+|+++++ +..++.|.+|++.. ++. +..+.... ..+..++|
T Consensus 169 ~~~~g~~~~~~~~~~~~-g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 247 (347)
T 3hfq_A 169 VSDAGQLSEQSVLTMEA-GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRL 247 (347)
T ss_dssp ECTTSCEEEEEEEECCT-TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEE
T ss_pred ECCCCcEEEeeeEEcCC-CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEE
Confidence 87 4432211 11111 123567999999996655 56678999998763 432 23333322 45889999
Q ss_pred ccCCCEE-EEeecCCeeeeccccccchhheeeccccC-CceeEEEEEecCCcc
Q psy4754 253 SPDGTAF-SSGSWDTTLRDEESKNRYMQYLLRSRITK-PTQGLTVYFQDRGRS 303 (304)
Q Consensus 253 sp~g~~l-asgs~D~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 303 (304)
+|||++| ++...++.|++|++......... ..... ....-.++|+|+|+.
T Consensus 248 spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~-~~~~~~~~~~~~~~~spdg~~ 299 (347)
T 3hfq_A 248 SHDGHFLYVSNRGYNTLAVFAVTADGHLTLI-QQISTEGDFPRDFDLDPTEAF 299 (347)
T ss_dssp CTTSCEEEEEEETTTEEEEEEECGGGCEEEE-EEEECSSSCCCEEEECTTSSE
T ss_pred CCCCCEEEEEeCCCCEEEEEEECCCCcEEEe-EEEecCCCCcCeEEECCCCCE
Confidence 9999977 56677999999998643211111 11111 222456778888764
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=9.2e-21 Score=170.64 Aligned_cols=213 Identities=15% Similarity=0.061 Sum_probs=154.2
Q ss_pred CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC----------eeEeEEecc---cee
Q psy4754 48 YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD----------KEVACYKKD---SIL 114 (304)
Q Consensus 48 g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~----------~~~~~~~~~---~~~ 114 (304)
+.+++|+.... .+...+..+++++++.++++++.|+ + ++|+.... ..+...... ...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-L--QIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMK 92 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-E--EEEEHHHHCCCCCTTCCTTCEEECCCCEEECCS
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-E--EEEEchHhhhhcccccCcccccccCccccccCC
Confidence 46888875321 1344578899999999999999887 4 56654311 011100000 001
Q ss_pred eceeeeEEcCCCCEEE----EEeCCCeEEEecCCcc--------cc---ceeccCcccceeEEEEcCC-CcEEEEeecCC
Q psy4754 115 FGATSVDFSVSGRLLF----AGYNDYTINVWDSLKC--------CR---VNHLMGHENRVSCLQVSPD-GTAFSSGSWDT 178 (304)
Q Consensus 115 ~~~~~~~~s~~~~~l~----sg~~dg~i~iwd~~~~--------~~---~~~~~~h~~~v~~v~~sp~-~~~las~s~d~ 178 (304)
..+.+++|++++++|+ +|+.|+.|++||+.+. +. +..+.+|...|.+++|+|+ ++.|++++.|+
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence 1367899999999999 7888999999997654 11 3456689999999999998 78999999999
Q ss_pred ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc-------ccceEEEE
Q psy4754 179 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-------ENRVSCLQ 251 (304)
Q Consensus 179 ~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-------~~~i~~l~ 251 (304)
++ ++||+++.........+. ..+.+++|+|+|++|++|+.|++|++||.. ++....+..| ...|.+++
T Consensus 173 ~v--~iwD~~~~~~~~~~~~~~--~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~ 247 (434)
T 2oit_A 173 SI--AVLQVTETVKVCATLPST--VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVL 247 (434)
T ss_dssp CE--EEEEESSSEEEEEEECGG--GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEE
T ss_pred eE--EEEEcCCCcceeeccCCC--CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEE
Confidence 96 699999876544433322 357999999999999999999999999987 4455555444 33899999
Q ss_pred EccCCCEEEEe-ecCCe------eeeccccc
Q psy4754 252 VSPDGTAFSSG-SWDTT------LRDEESKN 275 (304)
Q Consensus 252 ~sp~g~~lasg-s~D~~------i~~~~~~~ 275 (304)
|++++.++++. +.|+. +++|++.+
T Consensus 248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 248 WIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred EecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 99998887653 34433 77887764
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=185.31 Aligned_cols=239 Identities=14% Similarity=0.066 Sum_probs=164.8
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcC---cEEEEEECCCCCeEEEEeC---------CCceEEEEe
Q psy4754 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN---RVSCLQVSPDGTAFSSGSW---------DTTLRCRLF 97 (304)
Q Consensus 30 ~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~---~V~~l~~s~d~~~l~sgs~---------D~~i~~~~w 97 (304)
..++|+|+|++++++ .|++|++||+.+++....+.+|.. .|.+++|||||++|++++. |++ +++|
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~--i~~~ 95 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT--YYIY 95 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE--EEEE
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE--EEEE
Confidence 368999999766655 699999999999887666655543 4899999999999998876 556 5899
Q ss_pred eeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee-ccCcccce-----------------
Q psy4754 98 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRV----------------- 159 (304)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v----------------- 159 (304)
|+.+++.+...+. ...+..+.|||||+.++.+. ++.|++||+.+++.... ..++...|
T Consensus 96 d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 96 DLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp ETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred ECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 9988765210011 12356789999999999886 78999999877654322 12332222
Q ss_pred eEEEEcCCCcEEEEeecCC--------------------------------ceEEEEeeecCCceE--EEeec----Cce
Q psy4754 160 SCLQVSPDGTAFSSGSWDT--------------------------------TLRCRLFDLRADKEV--ACYKK----DSI 201 (304)
Q Consensus 160 ~~v~~sp~~~~las~s~d~--------------------------------~i~i~~~d~~~~~~~--~~~~~----~~~ 201 (304)
.+++|||||+.|++++.|. ...+++||+.+++.. ..+.. ...
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 4899999999999988653 124578998776532 11110 011
Q ss_pred eeeeeEEEEcCCCCEEEEEeCC----CcEEEEe----CCCceeeEEe----eccccceE-----EEEEccCCCEEEE--e
Q psy4754 202 LFGATSVDFSVSGRLLFAGYND----YTINVWD----SLKCCRVNHL----MGHENRVS-----CLQVSPDGTAFSS--G 262 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~sg~~d----~~i~iwd----~~~~~~~~~~----~~h~~~i~-----~l~~sp~g~~las--g 262 (304)
...+..++|+||++++++.... ..|.+|| ..+++....+ .+|...+. .++|+|||+.|+. +
T Consensus 252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 331 (719)
T 1z68_A 252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFS 331 (719)
T ss_dssp CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEE
T ss_pred cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEE
Confidence 2346889999999887775432 2488899 7777655444 46777777 8999999996554 4
Q ss_pred ecCCe--eeeccccc
Q psy4754 263 SWDTT--LRDEESKN 275 (304)
Q Consensus 263 s~D~~--i~~~~~~~ 275 (304)
..|+. |.+|+...
T Consensus 332 ~~~g~~~l~~~~~~~ 346 (719)
T 1z68_A 332 DKDGYKHIHYIKDTV 346 (719)
T ss_dssp CTTSCEEEEEESSCS
T ss_pred ccCCceEEEEEECCC
Confidence 45554 55555543
No 161
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.87 E-value=1.3e-19 Score=157.13 Aligned_cols=243 Identities=13% Similarity=0.080 Sum_probs=179.2
Q ss_pred ceeEEEEcCCCCEEEEeeCC------------------------CcEEEEeCCCceeeeeec-CCcCcEEEEEECCCCCe
Q psy4754 28 GATSVDFSVSGRLLFAGYND------------------------YTINVWDSLKCCRVNHLM-GHENRVSCLQVSPDGTA 82 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~d------------------------g~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~d~~~ 82 (304)
.+.+++++|+|+++++.+.+ ++|.+||..+++.+..+. ++-.....+++.++|++
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l 104 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNY 104 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCE
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCE
Confidence 48999999999999988877 579999998888776554 45567889999999998
Q ss_pred EEEEeCCCceEEEEeeeCCCe-eEeEEec-------cceeeceeeeEEcC-CCCEEEEEe-CCCeEEEecCCccccceec
Q psy4754 83 FSSGSWDTTLRCRLFDLRADK-EVACYKK-------DSILFGATSVDFSV-SGRLLFAGY-NDYTINVWDSLKCCRVNHL 152 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~-~~~~~~~-------~~~~~~~~~~~~s~-~~~~l~sg~-~dg~i~iwd~~~~~~~~~~ 152 (304)
+++...++.| +.||..... .+..+.. .........++++| ++..+++.+ .++.|++|| .++..+..+
T Consensus 105 ~v~d~~~~~v--~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 105 WVTDVALHQV--FKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp EEEETTTTEE--EEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred EEEECCCCEE--EEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 8888877774 678875432 3333321 11222457899999 777777775 689999999 444444444
Q ss_pred c----------CcccceeEEEEcCC-CcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcC------CCC
Q psy4754 153 M----------GHENRVSCLQVSPD-GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV------SGR 215 (304)
Q Consensus 153 ~----------~h~~~v~~v~~sp~-~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~------~g~ 215 (304)
. ++...+..|+++|+ ++++++...++.| ++||..+++.+..+........+..++|+| +|+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I--~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRI--QCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEE--EEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEE--EEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC
Confidence 2 23345889999998 7777777777775 689988777776664332223456888899 333
Q ss_pred EEEEEeCCCcEEEEeCCCceeeEEe---eccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 216 LLFAGYNDYTINVWDSLKCCRVNHL---MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 216 ~l~sg~~d~~i~iwd~~~~~~~~~~---~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
.+++...+.+|++|+..+++.+..+ .++...+..|+++|+|..+++.+.++.|+.|++..
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 3333334558999999999888877 36777899999999999999999999999998754
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.86 E-value=2.9e-20 Score=164.11 Aligned_cols=269 Identities=14% Similarity=-0.012 Sum_probs=175.3
Q ss_pred EEeeccccceEeeeeccccccceeE-----EEEcCCCCEEEEeeC-CCc--EEEEeCCCceeeeeecCCcCcEEEEEECC
Q psy4754 7 RLFDLRADKEVACYKKDSILFGATS-----VDFSVSGRLLFAGYN-DYT--INVWDSLKCCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 7 ~~wd~~~~~~~~~~~~~~~~~~i~~-----~~~~~~g~~l~tg~~-dg~--v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 78 (304)
...|..++.++..+..+ ...... .+|+|||+.|+.++. +|. |.+||+.+++......+|...+..++|+|
T Consensus 13 ~~~~~~~g~~~~~lt~~--~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp 90 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPP--DVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP 90 (388)
T ss_dssp EEECTTTCCEEEECSCT--TSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT
T ss_pred EEecCCCCcceEEecCC--cccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC
Confidence 45677777766554432 222333 789999998888877 674 88889988887766666766666778999
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE----------------------eCCC
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG----------------------YNDY 136 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg----------------------~~dg 136 (304)
||+.|+.++.++.+ ++||+.+++..................+++++.+++.. ..+.
T Consensus 91 dg~~l~~~~~~~~l--~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T 3pe7_A 91 DDDALFYVKDGRNL--MRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC 168 (388)
T ss_dssp TSSEEEEEETTTEE--EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred CCCEEEEEeCCCeE--EEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcc
Confidence 99999999988774 78999887766554433221111223458999888743 2457
Q ss_pred eEEEecCCccccceeccCcccceeEEEEcC-CCcEEEEeecCC----ceEEEEeeecCCceEEEeecCceeeeeeEEEEc
Q psy4754 137 TINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDT----TLRCRLFDLRADKEVACYKKDSILFGATSVDFS 211 (304)
Q Consensus 137 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~d~----~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 211 (304)
.|.+||+.+++ ...+..+...+..+.|+| |++.++.++.+. ...++++|..+.+... +........+..++|+
T Consensus 169 ~l~~~d~~~g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 169 RLMRVDLKTGE-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWV 246 (388)
T ss_dssp EEEEEETTTCC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEEC
T ss_pred eEEEEECCCCc-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceEC
Confidence 89999988764 344556667889999999 999888777542 2335677766544322 2222111235678899
Q ss_pred CCCCEEEEEeC-CC----cEEEEeCCCcee--eEEeeccccc---eEEEEEccCCCEEEEe---------ecCCeeeecc
Q psy4754 212 VSGRLLFAGYN-DY----TINVWDSLKCCR--VNHLMGHENR---VSCLQVSPDGTAFSSG---------SWDTTLRDEE 272 (304)
Q Consensus 212 ~~g~~l~sg~~-d~----~i~iwd~~~~~~--~~~~~~h~~~---i~~l~~sp~g~~lasg---------s~D~~i~~~~ 272 (304)
|||+.|+..+. ++ .|.+||+.+++. +..+.++... ...++|+|||+.|+.. ..+..|.+|+
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 99997765432 22 399999988763 3333331111 1223799999988854 4466899999
Q ss_pred ccccchhhe
Q psy4754 273 SKNRYMQYL 281 (304)
Q Consensus 273 ~~~~~~~~~ 281 (304)
+..+....+
T Consensus 327 ~~~~~~~~l 335 (388)
T 3pe7_A 327 MKNGTQHRV 335 (388)
T ss_dssp TTTTEEEEE
T ss_pred ccCCceEEe
Confidence 876554333
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.86 E-value=6e-19 Score=155.02 Aligned_cols=283 Identities=14% Similarity=0.091 Sum_probs=190.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee----------CCCcEEEEeCCCceeeeeecCC----
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY----------NDYTINVWDSLKCCRVNHLMGH---- 67 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~h---- 67 (304)
.|++|.+||..+++....++.. ..- .++|+|||++++++. .+++|.+||..+++.+..+...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g---~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTA---FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECC---EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred ccCeEEEEECCCCeEEEEecCC---CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 3679999999999877655432 123 899999999988876 3678999999988877766432
Q ss_pred --cCcEEEEEECCCCCeEEEEeC--CCceEEEEeeeCCCeeEeE-EeccceeeceeeeEEcCCC-CEEEEEeCCCeEEEe
Q psy4754 68 --ENRVSCLQVSPDGTAFSSGSW--DTTLRCRLFDLRADKEVAC-YKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVW 141 (304)
Q Consensus 68 --~~~V~~l~~s~d~~~l~sgs~--D~~i~~~~wd~~~~~~~~~-~~~~~~~~~~~~~~~s~~~-~~l~sg~~dg~i~iw 141 (304)
......++++|||++|+.+.. +++ +.+||+.+.+.+.. +.... ...+.+.|++ ..+++.+.||.+.+|
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~~~~~~--v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~dg~~~~v 178 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNASPATS--IGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGDGGLLTI 178 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEESSSEE--EEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETTSSEEEE
T ss_pred ccCCCcceEEECCCCCEEEEECCCCCCe--EEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCCCcEEEE
Confidence 244567899999999998875 455 57899998877654 33211 1224456654 567788889999998
Q ss_pred cCCc-cccc------eeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCce--EEEeecCc--------eeee
Q psy4754 142 DSLK-CCRV------NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE--VACYKKDS--------ILFG 204 (304)
Q Consensus 142 d~~~-~~~~------~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~--~~~~~~~~--------~~~~ 204 (304)
+... ++.. ..+..+..+ ..+.++|++..++..+.++.+ .++|+...+. ...+.... ....
T Consensus 179 ~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v--~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g 255 (361)
T 2oiz_A 179 NLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNV--YSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG 255 (361)
T ss_dssp EECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEE--EEEECSSSSCEEEEEEESCCHHHHHTTCEECC
T ss_pred EECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeE--EEEEecCCCceecccccccCccccccccccCC
Confidence 8654 2222 111112222 233446777777777778774 6788765432 11211100 0111
Q ss_pred eeEEEEcCCCCEEEEEeC-----------CCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 205 ATSVDFSVSGRLLFAGYN-----------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 205 ~~~~~~s~~g~~l~sg~~-----------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
...++|+|+++.+.++.. ..+|.+||..+++.+.++..+. +.+++|+|||++|+++.. ++|.+||.
T Consensus 256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 123689999887766543 3479999999999999998877 899999999999998876 99999987
Q ss_pred cccchhheeeccc-cCCceeEEEEEecCCc
Q psy4754 274 KNRYMQYLLRSRI-TKPTQGLTVYFQDRGR 302 (304)
Q Consensus 274 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 302 (304)
....++ .. .++ .-...+-.+.+.|+|+
T Consensus 333 ~t~~l~-~~-~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 333 SQPEPK-LL-RTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SSSSCE-EE-EEETTSCSSEEEEEECCCSC
T ss_pred CCCcce-ee-EEeccCCCCcEEEEecCCCC
Confidence 665211 11 332 3345567789999885
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.86 E-value=2.4e-18 Score=145.78 Aligned_cols=237 Identities=12% Similarity=0.136 Sum_probs=172.5
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec------CCcCcEEEEEE-CCCCCeEEEEeC-CCceEEEEeee
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM------GHENRVSCLQV-SPDGTAFSSGSW-DTTLRCRLFDL 99 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~------~h~~~V~~l~~-s~d~~~l~sgs~-D~~i~~~~wd~ 99 (304)
...+++++++|.++++...++.|.+||.. ++.+..+. +|...+..+++ .++++++++... ++. +.+||
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~--i~~~d- 106 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ--IQIYN- 106 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE--EEEEC-
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE--EEEEC-
Confidence 37899999999999998899999999987 55554442 34467889999 577777777643 666 46888
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceecc--CcccceeEEEEcCCCcEEEEeecC
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSPDGTAFSSGSWD 177 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~~sp~~~~las~s~d 177 (304)
.+++.+..+.... ...+..++++++++.+++...++.|.+||.. ++.+..+. ++...+.+++++|+++++++.+.+
T Consensus 107 ~~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 184 (286)
T 1q7f_A 107 QYGQFVRKFGATI-LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA 184 (286)
T ss_dssp TTSCEEEEECTTT-CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred CCCcEEEEecCcc-CCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence 4555555443221 1235688999999877777778999999954 33333332 445578999999999988887777
Q ss_pred CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC-cEEEEeCCCceeeEEeeccc--cceEEEEEcc
Q psy4754 178 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY-TINVWDSLKCCRVNHLMGHE--NRVSCLQVSP 254 (304)
Q Consensus 178 ~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~-~i~iwd~~~~~~~~~~~~h~--~~i~~l~~sp 254 (304)
+.| ++||... +.+..+........+..++++|+|+++++...++ .|.+||. +++.+..+..+. ..+.+++++|
T Consensus 185 ~~i--~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~ 260 (286)
T 1q7f_A 185 HCV--KVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD 260 (286)
T ss_dssp TEE--EEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred CEE--EEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC
Confidence 775 6888743 4444443332223467899999999999888776 9999995 456666666553 3478999999
Q ss_pred CCCEEEEeecCCeeeeccccc
Q psy4754 255 DGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 255 ~g~~lasgs~D~~i~~~~~~~ 275 (304)
+|+.+++ +.|++|++|++..
T Consensus 261 ~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 261 DGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp TTEEEEE-ETTTEEEEEECSC
T ss_pred CCcEEEE-CCCCeEEEEEccc
Confidence 9998888 5799999998643
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=2.9e-20 Score=178.16 Aligned_cols=243 Identities=14% Similarity=0.100 Sum_probs=166.2
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCc-----EEEEEECCCCCeEEEEeCCCce-------EEEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR-----VSCLQVSPDGTAFSSGSWDTTL-------RCRL 96 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~-----V~~l~~s~d~~~l~sgs~D~~i-------~~~~ 96 (304)
..+++|+|||++++++ ||+|++||+.+++....+.+|... ...++|||||++|+.++.+.++ .+++
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 5679999999999886 999999999999877767776543 2347899999999998876442 2468
Q ss_pred eeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce-eccCcccce----------------
Q psy4754 97 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRV---------------- 159 (304)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~h~~~v---------------- 159 (304)
||+.+++... +... ...+...+|||||+.+|.+. ++.|++||+.++.... +..++...+
T Consensus 97 ~d~~~~~~~~-l~~~--~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 97 YDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EECCCCcEEE-cccC--CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 9998876543 2211 12356889999999998885 6899999987655332 222333222
Q ss_pred -eEEEEcCCCcEEEEeecCCc----------------------------------eEEEEeeecC---Cc--eEEEeecC
Q psy4754 160 -SCLQVSPDGTAFSSGSWDTT----------------------------------LRCRLFDLRA---DK--EVACYKKD 199 (304)
Q Consensus 160 -~~v~~sp~~~~las~s~d~~----------------------------------i~i~~~d~~~---~~--~~~~~~~~ 199 (304)
..+.|||||+.||..+.|.+ +.+++||+.+ ++ ....+...
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 35899999999998864433 3467788877 52 11222110
Q ss_pred ----ceeeeeeEEEEcCCCCEEEEEeC----CCcEEEEeCCCce----e--eEEe--eccccceE-----EEEEccCCCE
Q psy4754 200 ----SILFGATSVDFSVSGRLLFAGYN----DYTINVWDSLKCC----R--VNHL--MGHENRVS-----CLQVSPDGTA 258 (304)
Q Consensus 200 ----~~~~~~~~~~~s~~g~~l~sg~~----d~~i~iwd~~~~~----~--~~~~--~~h~~~i~-----~l~~sp~g~~ 258 (304)
.....+..++|+|||+.++.... +..|.+||..+++ + +..+ .+|..+|. ..+|+|||+.
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 01234678999999997766432 2369999988765 1 2222 45766665 7899999998
Q ss_pred EE-Eeec-C--Ceeeeccccccc
Q psy4754 259 FS-SGSW-D--TTLRDEESKNRY 277 (304)
Q Consensus 259 la-sgs~-D--~~i~~~~~~~~~ 277 (304)
|+ ..|. | ..|.+|+...+.
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSS
T ss_pred EEEEEEcCCCceEEEEEECCCCc
Confidence 87 6664 3 356677665444
No 166
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=3.3e-18 Score=149.74 Aligned_cols=250 Identities=11% Similarity=0.081 Sum_probs=152.9
Q ss_pred eCCCcEEEEeC--CCceeeeeecCCcCcEEEEEECCCCCeEEEEeCC----CceEEEEeeeCC--CeeEeEEeccceeec
Q psy4754 45 YNDYTINVWDS--LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD----TTLRCRLFDLRA--DKEVACYKKDSILFG 116 (304)
Q Consensus 45 ~~dg~v~iwd~--~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D----~~i~~~~wd~~~--~~~~~~~~~~~~~~~ 116 (304)
+.++.|.+|++ .+++.......+...+..++|+|||++|++++.+ +.+ .+|++.. +..............
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v--~~~~~~~~~g~~~~~~~~~~~~~~ 101 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAV--SAFAFDKEKGTLHLLNTQKTMGAD 101 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEE--EEEEEETTTTEEEEEEEEECSSSC
T ss_pred CCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcE--EEEEEeCCCCcEEEeeEeccCCCC
Confidence 45678999976 4454322111166777889999999999999886 564 6777754 322111111101112
Q ss_pred eeeeEEcCCCCEEEEEe-CCCeEEEecCCccccceec------c--------CcccceeEEEEcCCCcEEEEee-cCCce
Q psy4754 117 ATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCRVNHL------M--------GHENRVSCLQVSPDGTAFSSGS-WDTTL 180 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~------~--------~h~~~v~~v~~sp~~~~las~s-~d~~i 180 (304)
...+++ +++++++++ .++.|.+|++.....+... . .+...+.+++|+|+++.++.++ .++.+
T Consensus 102 p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v 179 (361)
T 3scy_A 102 PCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQI 179 (361)
T ss_dssp EEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred cEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEE
Confidence 345555 788777766 5889999998654332211 1 1123457899999999666554 46664
Q ss_pred EEEEeeecCCce------E------EEeecCceeeeeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCcee--eEEee---c
Q psy4754 181 RCRLFDLRADKE------V------ACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCR--VNHLM---G 242 (304)
Q Consensus 181 ~i~~~d~~~~~~------~------~~~~~~~~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd~~~~~~--~~~~~---~ 242 (304)
++|++..... + ....... ...+..++|+|+|++++++. .++.|.+|++.++.. +..+. .
T Consensus 180 --~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~ 256 (361)
T 3scy_A 180 --HKFNINPNANADNKEKFLTKGTPEAFKVAP-GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV 256 (361)
T ss_dssp --EEEEECTTCCTTTCCCCEEEEEEEEEECCT-TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS
T ss_pred --EEEEEcCCCCcccccceeecccccceecCC-CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC
Confidence 6787764331 1 1111111 12457899999999887766 689999999876643 23332 2
Q ss_pred cccceEEEEEccCCCEEEEeec--CCeeeeccccc--cchhheeeccccCCceeEEEEEecCCcc
Q psy4754 243 HENRVSCLQVSPDGTAFSSGSW--DTTLRDEESKN--RYMQYLLRSRITKPTQGLTVYFQDRGRS 303 (304)
Q Consensus 243 h~~~i~~l~~sp~g~~lasgs~--D~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (304)
+...+.+++|+|||++|+.+.. +++|++|+.+. +....+. ........-.+.|+|+|+.
T Consensus 257 ~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~--~~~~g~~~~~~~~spdg~~ 319 (361)
T 3scy_A 257 NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVG--YQLTGIHPRNFIITPNGKY 319 (361)
T ss_dssp CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEE--EEECSSCCCEEEECTTSCE
T ss_pred CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEee--EecCCCCCceEEECCCCCE
Confidence 3455789999999998866655 48999998853 2211111 1111223445778888763
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=1.2e-18 Score=153.69 Aligned_cols=263 Identities=11% Similarity=-0.036 Sum_probs=173.5
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEE--ECCCCCe
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ--VSPDGTA 82 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~--~s~d~~~ 82 (304)
.|.+||+.+++...... .+...+..++|+|||+.|+.++.++.+++||+.+++.......+...+.... ++++++.
T Consensus 61 ~l~~~d~~~g~~~~lt~--~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~ 138 (388)
T 3pe7_A 61 NYYLLDLNTQVATQLTE--GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTK 138 (388)
T ss_dssp EEEEEETTTCEEEECCC--SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSE
T ss_pred eEEEEeCCCCceEEeee--CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCe
Confidence 48888999887654322 1222244678999999999999999999999999877666666666665444 4899998
Q ss_pred EEEEe--------------------CCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC-CCCEEEEEeCC------
Q psy4754 83 FSSGS--------------------WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYND------ 135 (304)
Q Consensus 83 l~sgs--------------------~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~d------ 135 (304)
++... .+....+++||+.+++......... .+..+.|+| +++.++....+
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~---~~~~~~~sp~dg~~l~~~~~~~~~~~~ 215 (388)
T 3pe7_A 139 LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ---WLGHPIYRPYDDSTVAFCHEGPHDLVD 215 (388)
T ss_dssp EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS---CEEEEEEETTEEEEEEEEECSCTTTSS
T ss_pred eccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCc---cccccEECCCCCCEEEEEEecCCCCCc
Confidence 87432 1122346889988775544332221 245788999 99988877653
Q ss_pred CeEEEecCCccccceeccCcc--cceeEEEEcCCCcEEEEeec-CCce--EEEEeeecCCceEEEeecCcee---eeeeE
Q psy4754 136 YTINVWDSLKCCRVNHLMGHE--NRVSCLQVSPDGTAFSSGSW-DTTL--RCRLFDLRADKEVACYKKDSIL---FGATS 207 (304)
Q Consensus 136 g~i~iwd~~~~~~~~~~~~h~--~~v~~v~~sp~~~~las~s~-d~~i--~i~~~d~~~~~~~~~~~~~~~~---~~~~~ 207 (304)
..|.++|..... ...+..+. ..+....|+|||+.|+..+. ++.- .+++||+.+++........... .....
T Consensus 216 ~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 294 (388)
T 3pe7_A 216 ARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDG 294 (388)
T ss_dssp CSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred ceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence 377888865443 33444444 35778899999997765543 2221 2579999887643222111100 00122
Q ss_pred EEEcCCCCEEEEE---------eCCCcEEEEeCCCceeeEEeecccc-----------ceEEEEEccCCCEEEEee-cCC
Q psy4754 208 VDFSVSGRLLFAG---------YNDYTINVWDSLKCCRVNHLMGHEN-----------RVSCLQVSPDGTAFSSGS-WDT 266 (304)
Q Consensus 208 ~~~s~~g~~l~sg---------~~d~~i~iwd~~~~~~~~~~~~h~~-----------~i~~l~~sp~g~~lasgs-~D~ 266 (304)
.+|+|||+.|+.. ..+..|.+||+.+++. ..+..|.. .+.+++|+|||+.|+..+ .++
T Consensus 295 ~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g 373 (388)
T 3pe7_A 295 SLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHG 373 (388)
T ss_dssp SEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS
T ss_pred CeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCC
Confidence 3699999988754 4466899999987654 45666665 578899999999888665 577
Q ss_pred eeeecccc
Q psy4754 267 TLRDEESK 274 (304)
Q Consensus 267 ~i~~~~~~ 274 (304)
...+|..+
T Consensus 374 ~~~l~~~~ 381 (388)
T 3pe7_A 374 KPALYLAT 381 (388)
T ss_dssp SCEEEEEE
T ss_pred ceeEEEEE
Confidence 77777543
No 168
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.83 E-value=7.3e-18 Score=146.50 Aligned_cols=244 Identities=11% Similarity=0.049 Sum_probs=164.0
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC---C--cEEEEeCCCceeeeeecCCcCcEEEEEEC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND---Y--TINVWDSLKCCRVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d---g--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 77 (304)
+.+|.+||+.+++.... ..+..++|+|||+.|+..+.+ + .|.+||+.+++.......+ . +..++|+
T Consensus 42 ~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~ws 112 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWN 112 (347)
T ss_dssp EEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEEC
T ss_pred cceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeEC
Confidence 45789999998865332 357889999999988877654 3 3778888877655443333 3 9999999
Q ss_pred CCCCeEEEEeCC-------------------------CceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE
Q psy4754 78 PDGTAFSSGSWD-------------------------TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 132 (304)
Q Consensus 78 ~d~~~l~sgs~D-------------------------~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg 132 (304)
|||+.|+.++.+ ..-.+++||+.+++.+..+.. . .+..+.|+|++ .++++
T Consensus 113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg-~~~~~ 187 (347)
T 2gop_A 113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDK-IVVNV 187 (347)
T ss_dssp TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTE-EEEEE
T ss_pred CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCe-EEEEE
Confidence 999988887643 134568899987765333333 1 45678899999 77777
Q ss_pred eCCC-------eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCC------ceEEEEeeecCCceEEEeecC
Q psy4754 133 YNDY-------TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT------TLRCRLFDLRADKEVACYKKD 199 (304)
Q Consensus 133 ~~dg-------~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~------~i~i~~~d~~~~~~~~~~~~~ 199 (304)
..+. ...+|.+.+++ ...+..+ ..+..+ +|||+.++.++.+. ...+++|| +++........
T Consensus 188 ~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~ 261 (347)
T 2gop_A 188 PHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV 261 (347)
T ss_dssp ECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC
T ss_pred ecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC
Confidence 5542 33444332332 3334444 455544 99999888777553 23456777 44433222221
Q ss_pred ceeeeeeE-EEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCee-eecccc
Q psy4754 200 SILFGATS-VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL-RDEESK 274 (304)
Q Consensus 200 ~~~~~~~~-~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i-~~~~~~ 274 (304)
. ..+.. +.|+ ++ ++++++.++.++|| +.+++. ..+..+...|.+++|+| ..+++++.+.+. ++|..+
T Consensus 262 ~--~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 262 D--RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp C--SEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred C--cccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 1 23454 7899 88 98999999999999 775543 44555678899999999 677777777665 788664
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=4.1e-18 Score=163.30 Aligned_cols=255 Identities=10% Similarity=0.030 Sum_probs=165.9
Q ss_pred CceeEEeeccccceEeeeeccc-cccce--eEEEEcCCCCEEEEeeCC---------CcEEEEeCCCceeeeeecCCcCc
Q psy4754 3 KNHCRLFDLRADKEVACYKKDS-ILFGA--TSVDFSVSGRLLFAGYND---------YTINVWDSLKCCRVNHLMGHENR 70 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~-~~~~i--~~~~~~~~g~~l~tg~~d---------g~v~iwd~~~~~~~~~~~~h~~~ 70 (304)
|++|++||+.++++...+..+. ....+ ..++|||||++|+.++.+ +.+.+||+.+++.. .+..|.+.
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~ 113 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNN 113 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTT
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCc
Confidence 6799999999998765555432 12233 448999999999988876 56679999998754 46678889
Q ss_pred EEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccce---e-e-------------ceeeeEEcCCCCEEEEEe
Q psy4754 71 VSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI---L-F-------------GATSVDFSVSGRLLFAGY 133 (304)
Q Consensus 71 V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~---~-~-------------~~~~~~~s~~~~~l~sg~ 133 (304)
+...+|||||+.|+.++ |+. +++||+.+++..+ +..+.. . . ....+.|||||+.|+.+.
T Consensus 114 ~~~~~~SPdG~~la~~~-~~~--i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 114 TQWVTWSPVGHKLAYVW-NND--IYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp EEEEEECSSTTCEEEEE-TTE--EEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred ceeeEECCCCCEEEEEE-CCe--EEEEECCCCceEE-EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 99999999999999885 566 4789987765433 211111 0 0 012478999999998875
Q ss_pred CCC------------------------------------eEEEecCCc---cc--cceecc------CcccceeEEEEcC
Q psy4754 134 NDY------------------------------------TINVWDSLK---CC--RVNHLM------GHENRVSCLQVSP 166 (304)
Q Consensus 134 ~dg------------------------------------~i~iwd~~~---~~--~~~~~~------~h~~~v~~v~~sp 166 (304)
.|. .|.+||+.+ ++ ....+. +|...+..++|+|
T Consensus 190 ~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp 269 (740)
T 4a5s_A 190 FNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT 269 (740)
T ss_dssp EECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE
T ss_pred EcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC
Confidence 321 588899877 52 122232 4778899999999
Q ss_pred CCcEEEEeec--CCceEEEEeeecCCc----eE--EEe--ecCceeee---eeEEEEcCCCCEEE-EEeC-C--CcEEEE
Q psy4754 167 DGTAFSSGSW--DTTLRCRLFDLRADK----EV--ACY--KKDSILFG---ATSVDFSVSGRLLF-AGYN-D--YTINVW 229 (304)
Q Consensus 167 ~~~~las~s~--d~~i~i~~~d~~~~~----~~--~~~--~~~~~~~~---~~~~~~s~~g~~l~-sg~~-d--~~i~iw 229 (304)
||+.++.... .....+++||+.+++ +. ..+ ..+..-.. ....+|+|||+.|+ ..+. + ..|.+|
T Consensus 270 dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 270 QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence 9997665433 223346899998876 11 111 11111001 23678999999877 6553 3 457788
Q ss_pred eCCCceeeEEeeccccceEEEEEccCCCEEE-Eeec
Q psy4754 230 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSW 264 (304)
Q Consensus 230 d~~~~~~~~~~~~h~~~i~~l~~sp~g~~la-sgs~ 264 (304)
|...+.. ..+......|..+. ++|+..|+ +++.
T Consensus 350 ~~~~~~~-~~lT~g~~~v~~~~-~~d~~~i~f~~~~ 383 (740)
T 4a5s_A 350 QIDKKDC-TFITKGTWEVIGIE-ALTSDYLYYISNE 383 (740)
T ss_dssp ETTCSSC-EESCCSSSCEEEEE-EECSSEEEEEESC
T ss_pred ECCCCce-EecccCCEEEEEEE-EEeCCEEEEEEec
Confidence 8776543 34444445555543 24455544 4443
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=6.4e-19 Score=155.57 Aligned_cols=267 Identities=14% Similarity=-0.030 Sum_probs=169.1
Q ss_pred EeeccccceEeeeeccccc---cceeEEEEcCCCCEEEEeeCC---CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC
Q psy4754 8 LFDLRADKEVACYKKDSIL---FGATSVDFSVSGRLLFAGYND---YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 8 ~wd~~~~~~~~~~~~~~~~---~~i~~~~~~~~g~~l~tg~~d---g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 81 (304)
..|..+++++..+...... ..+..++|+|||+.|+..... ..|.+||+.+++......++......+.|+|||+
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER 93 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence 4478888765544332111 116778999999987766443 4688889988765543333333233478999999
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEecccee-eceee----------------eEEcCCCCEEEEE-----eCCCeEE
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL-FGATS----------------VDFSVSGRLLFAG-----YNDYTIN 139 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~-~~~~~----------------~~~s~~~~~l~sg-----~~dg~i~ 139 (304)
.|+.++.++. +++||+..++........... ..... +.++|+++.++.. ..+..|.
T Consensus 94 ~l~~~~~~~~--l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 94 AFFYVKNELN--LMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp EEEEEETTTE--EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred EEEEEEcCCc--EEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence 9999988886 578999876654443321110 00001 3467777766554 3567899
Q ss_pred EecCCccccceeccCcccceeEEEEcC-CCcEEEEeecCCc----eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCC
Q psy4754 140 VWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWDTT----LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 214 (304)
Q Consensus 140 iwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~d~~----i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g 214 (304)
+||+.+++.. .+..+...+..+.|+| +++.++..+.+.. ..+++||+.+.+...... ......+..++|+|+|
T Consensus 172 ~~d~~~g~~~-~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg 249 (396)
T 3c5m_A 172 KVDIETGELE-VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDG 249 (396)
T ss_dssp EEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTS
T ss_pred EEECCCCcEE-eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCccccceEECCCC
Confidence 9998776543 3345667789999999 7887776654432 335678876554322222 1111245778999999
Q ss_pred CEEEEEeCC-----CcEEEEeCCCceeeEEeeccccceEEEEEcc-CCCEEEEeec----------------CCeeeecc
Q psy4754 215 RLLFAGYND-----YTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSW----------------DTTLRDEE 272 (304)
Q Consensus 215 ~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp-~g~~lasgs~----------------D~~i~~~~ 272 (304)
++|+.++.+ +.|++||+.+++... +..... .. ++|+| ||+.|+.++. +..|.+|+
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 250 SAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLN 326 (396)
T ss_dssp SCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEE
T ss_pred CEEEEEecCCCCccceEEEEECCCCCeEE-eeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEe
Confidence 987776543 449999988765432 221222 23 89999 9999887652 46788998
Q ss_pred ccccchhhe
Q psy4754 273 SKNRYMQYL 281 (304)
Q Consensus 273 ~~~~~~~~~ 281 (304)
...+....+
T Consensus 327 ~~~~~~~~l 335 (396)
T 3c5m_A 327 TKAKSAQKL 335 (396)
T ss_dssp TTTTBCCEE
T ss_pred cccCceEEc
Confidence 766544333
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.80 E-value=6.4e-18 Score=159.62 Aligned_cols=263 Identities=12% Similarity=-0.035 Sum_probs=173.4
Q ss_pred CceeEEeeccccceEeeeecccccccee---------EEEEc--CCCCE-EEEee-CCCcEEEEeCC--C-ceeeeeecC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGAT---------SVDFS--VSGRL-LFAGY-NDYTINVWDSL--K-CCRVNHLMG 66 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~---------~~~~~--~~g~~-l~tg~-~dg~v~iwd~~--~-~~~~~~~~~ 66 (304)
+++.+||....+.....+ ..+...+. +..|+ |||+. |+.++ .+..|.+|+.. . + ..+.+..
T Consensus 46 ~~~~~l~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~-~~~~l~~ 122 (662)
T 3azo_A 46 AGRATLVRRRADGAEESA--LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA-VPRPLTP 122 (662)
T ss_dssp TTEEEEEEECTTSCEEES--SCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC-CCEECSC
T ss_pred CCcEEEEEECCCCCccee--CCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC-CCEeccC
Confidence 567889985444332222 12222333 55565 99987 66544 35677777765 2 3 3344444
Q ss_pred -----CcCcEEEEEECCCCCeEEEEeCCC--------ceEEEEeeeCC------CeeEeEEe-ccceeeceeeeEEcCCC
Q psy4754 67 -----HENRVSCLQVSPDGTAFSSGSWDT--------TLRCRLFDLRA------DKEVACYK-KDSILFGATSVDFSVSG 126 (304)
Q Consensus 67 -----h~~~V~~l~~s~d~~~l~sgs~D~--------~i~~~~wd~~~------~~~~~~~~-~~~~~~~~~~~~~s~~~ 126 (304)
|...+..++|+|||+.|+.++.|. ...+++||+.. +.. ..+. ... ..+..+.|||||
T Consensus 123 ~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~--~~~~~~~~SpDG 199 (662)
T 3azo_A 123 VSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAH--RFVTGPRLSPDG 199 (662)
T ss_dssp CCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCS--SEECCCEECTTS
T ss_pred CccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCC--CcccCceECCCC
Confidence 677889999999999999888762 13468899876 433 2222 211 134568899999
Q ss_pred CEEEEEeCC--------CeEEEecCC-cc---ccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEE
Q psy4754 127 RLLFAGYND--------YTINVWDSL-KC---CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 194 (304)
Q Consensus 127 ~~l~sg~~d--------g~i~iwd~~-~~---~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~ 194 (304)
++|+.++.+ ..|.+||+. ++ .......+|...+..+.|+|||+++++++.++..++++||+.+++...
T Consensus 200 ~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~ 279 (662)
T 3azo_A 200 RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ 279 (662)
T ss_dssp SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE
T ss_pred CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee
Confidence 999887754 479999987 44 222223345788999999999998888888887667788876655433
Q ss_pred EeecCcee------eeeeEEEEcCCCCEEEEEeCCCcEEEE--eCCCceeeEEeeccccceEEE-EEccCCCEEEEeecC
Q psy4754 195 CYKKDSIL------FGATSVDFSVSGRLLFAGYNDYTINVW--DSLKCCRVNHLMGHENRVSCL-QVSPDGTAFSSGSWD 265 (304)
Q Consensus 195 ~~~~~~~~------~~~~~~~~s~~g~~l~sg~~d~~i~iw--d~~~~~~~~~~~~h~~~i~~l-~~sp~g~~lasgs~D 265 (304)
....+... ..+..++|+|++++++++.. +.++|| |..+++ +..+..|...+..+ +++++...+++++.+
T Consensus 280 l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~ 357 (662)
T 3azo_A 280 LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPR 357 (662)
T ss_dssp SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred cccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCC
Confidence 32221110 01356889999999999998 999999 555554 67788888888877 665554556666777
Q ss_pred Ceeeeccc
Q psy4754 266 TTLRDEES 273 (304)
Q Consensus 266 ~~i~~~~~ 273 (304)
...++|..
T Consensus 358 ~~~~i~~~ 365 (662)
T 3azo_A 358 TAYEVVEL 365 (662)
T ss_dssp EEEEEEEE
T ss_pred CCCEEEEE
Confidence 66666643
No 172
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=3.1e-17 Score=144.14 Aligned_cols=221 Identities=10% Similarity=-0.014 Sum_probs=143.0
Q ss_pred CcEEEEeC--CCceee--eeec-CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC-CCeeEeEEeccceeeceeeeE
Q psy4754 48 YTINVWDS--LKCCRV--NHLM-GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR-ADKEVACYKKDSILFGATSVD 121 (304)
Q Consensus 48 g~v~iwd~--~~~~~~--~~~~-~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~-~~~~~~~~~~~~~~~~~~~~~ 121 (304)
+.|.+|+. .+++.. .... .....+..++|+|||++|++++.+ + +.+||+. +++.......... .....++
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~--v~~~~~~~~g~~~~~~~~~~~-g~~~~~~ 89 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-K--WSSFAVKSPTEIVHEASHPIG-GHPRAND 89 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-E--EEEEEEEETTEEEEEEEEECC-SSGGGGC
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-e--EEEEEECCCCCEEEeeEeecC-CCCccEE
Confidence 46777664 455432 2211 233467789999999999999888 4 5789986 5554332221100 1134688
Q ss_pred EcCCCCE--EEEEe-------------CCCeEEEecCCc-cccceecc----CcccceeEEEEcCCCcEEEEeec-CCce
Q psy4754 122 FSVSGRL--LFAGY-------------NDYTINVWDSLK-CCRVNHLM----GHENRVSCLQVSPDGTAFSSGSW-DTTL 180 (304)
Q Consensus 122 ~s~~~~~--l~sg~-------------~dg~i~iwd~~~-~~~~~~~~----~h~~~v~~v~~sp~~~~las~s~-d~~i 180 (304)
|+|++++ +++++ .++.+.+|++.. ++....+. .+...+.+++|+|||++++++.. ++.
T Consensus 90 ~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~- 168 (365)
T 1jof_A 90 ADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK- 168 (365)
T ss_dssp TTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE-
T ss_pred ECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCE-
Confidence 9999995 44543 689999999863 33322222 24567899999999998887654 455
Q ss_pred EEEEeeec-CCceE--EEeecCceeeeeeEEEEcCCCCEEEEEeC-CCcEEEEeCC--Cceee---EEee-------ccc
Q psy4754 181 RCRLFDLR-ADKEV--ACYKKDSILFGATSVDFSVSGRLLFAGYN-DYTINVWDSL--KCCRV---NHLM-------GHE 244 (304)
Q Consensus 181 ~i~~~d~~-~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~sg~~-d~~i~iwd~~--~~~~~---~~~~-------~h~ 244 (304)
+++|++. +++.. ..+........+..++|+|+|+++++++. ++.|.+|+.. +++.. ..+. +|.
T Consensus 169 -v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 247 (365)
T 1jof_A 169 -LWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD 247 (365)
T ss_dssp -EEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred -EEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence 4789987 55542 22221100124678999999999887764 6899999754 44432 1221 223
Q ss_pred c------ceEEEE-EccCCCEEEEeecCC------eeeecccc
Q psy4754 245 N------RVSCLQ-VSPDGTAFSSGSWDT------TLRDEESK 274 (304)
Q Consensus 245 ~------~i~~l~-~sp~g~~lasgs~D~------~i~~~~~~ 274 (304)
. .+..++ |+|||++|+++..+. +|++|+.+
T Consensus 248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 2 588999 999999887766533 89999875
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=5.5e-18 Score=149.51 Aligned_cols=260 Identities=12% Similarity=-0.007 Sum_probs=168.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEE--------
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC-------- 73 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~-------- 73 (304)
|+..|.+||+.+++........ ......+.|+|||+.|+.++.++.|.+||+.+++.......+..+...
T Consensus 58 g~~~l~~~d~~~~~~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~ 135 (396)
T 3c5m_A 58 GNRNYYLLNLETQQAVQLTEGK--GDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSD 135 (396)
T ss_dssp SSCEEEEEETTTTEEEECCCSS--CBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTT
T ss_pred CCceEEEEECCCCcEEEeecCC--CCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEecc
Confidence 3457888899888654322111 111334789999999999999999999999887655544445444433
Q ss_pred -----------EEECCCCCeEEEEeC---CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcC-CCCEEEEEeCC---
Q psy4754 74 -----------LQVSPDGTAFSSGSW---DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSV-SGRLLFAGYND--- 135 (304)
Q Consensus 74 -----------l~~s~d~~~l~sgs~---D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~d--- 135 (304)
++|+|+++.++.... +....+++||+.+++........ ..+..+.|+| ++..++..+.+
T Consensus 136 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~---~~~~~~~~sp~dg~~l~~~~~~~~~ 212 (396)
T 3c5m_A 136 CTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDT---AWLGHPIYRPFDDSTVGFCHEGPHD 212 (396)
T ss_dssp SSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEES---SCEEEEEEETTEEEEEEEEECSCSS
T ss_pred CCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCC---cccccceECCCCCCEEEEEecCCCC
Confidence 356788876654431 23334688999876654433221 2345788999 78877766543
Q ss_pred ---CeEEEecCCccccceeccCc--ccceeEEEEcCCCcEEEEeecC-CceE--EEEeeecCCceEEEeecCceeeeeeE
Q psy4754 136 ---YTINVWDSLKCCRVNHLMGH--ENRVSCLQVSPDGTAFSSGSWD-TTLR--CRLFDLRADKEVACYKKDSILFGATS 207 (304)
Q Consensus 136 ---g~i~iwd~~~~~~~~~~~~h--~~~v~~v~~sp~~~~las~s~d-~~i~--i~~~d~~~~~~~~~~~~~~~~~~~~~ 207 (304)
..|.+||+.... ...+..+ ...+..++|+||++.++..+.+ +.-. +++||+.+++......... ..
T Consensus 213 ~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~- 286 (396)
T 3c5m_A 213 LVDARMWLVNEDGSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS- 286 (396)
T ss_dssp SCSCCCEEEETTSCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-
T ss_pred CCCceEEEEECCCCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-
Confidence 368888876543 2233333 2357889999999987766543 2212 5789988776533322211 12
Q ss_pred EEEcC-CCCEEEEEe----------------CCCcEEEEeCCCceeeEEeecccc-----------ceEEEEEccCCCEE
Q psy4754 208 VDFSV-SGRLLFAGY----------------NDYTINVWDSLKCCRVNHLMGHEN-----------RVSCLQVSPDGTAF 259 (304)
Q Consensus 208 ~~~s~-~g~~l~sg~----------------~d~~i~iwd~~~~~~~~~~~~h~~-----------~i~~l~~sp~g~~l 259 (304)
+.|+| +|++++++. .+..|.+||..+++. ..+..|.. .+.+++|+|||+.|
T Consensus 287 ~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 365 (396)
T 3c5m_A 287 HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGV 365 (396)
T ss_dssp EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeE
Confidence 78999 999888754 346899999877653 34555554 25678999999998
Q ss_pred EEeec-CCeeeeccc
Q psy4754 260 SSGSW-DTTLRDEES 273 (304)
Q Consensus 260 asgs~-D~~i~~~~~ 273 (304)
+..+. ++...+|..
T Consensus 366 ~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 366 LFTSDFEGVPAIYIA 380 (396)
T ss_dssp EEEECTTSSCEEEEE
T ss_pred EEEecCCCCceEEEE
Confidence 87764 566666644
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=2.5e-17 Score=155.62 Aligned_cols=242 Identities=10% Similarity=-0.049 Sum_probs=165.0
Q ss_pred cceeEEEEcCCCCEEEEe--eCCCcEEEEeCCCceeeeeecCCcCcEE---------EEEEC--CCCCe-EEEEeCCCce
Q psy4754 27 FGATSVDFSVSGRLLFAG--YNDYTINVWDSLKCCRVNHLMGHENRVS---------CLQVS--PDGTA-FSSGSWDTTL 92 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg--~~dg~v~iwd~~~~~~~~~~~~h~~~V~---------~l~~s--~d~~~-l~sgs~D~~i 92 (304)
..+..++|++++-++++. +.++...||....+...+.+..|...+. ...|+ |||+. |+.++. ...
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~-~~~ 102 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF-GDQ 102 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT-TTC
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC-CCC
Confidence 448899999887777777 6689999999654444555666666655 56565 99998 776554 344
Q ss_pred EEEEeeeC--C-CeeEeEEeccc---eeeceeeeEEcCCCCEEEEEeCC----------CeEEEecCCcc-----cccee
Q psy4754 93 RCRLFDLR--A-DKEVACYKKDS---ILFGATSVDFSVSGRLLFAGYND----------YTINVWDSLKC-----CRVNH 151 (304)
Q Consensus 93 ~~~~wd~~--~-~~~~~~~~~~~---~~~~~~~~~~s~~~~~l~sg~~d----------g~i~iwd~~~~-----~~~~~ 151 (304)
.++++++. . +. ...+.... .......++|+|||+.|++++.+ ..|.+||+.+. .....
T Consensus 103 ~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 181 (662)
T 3azo_A 103 RLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE 181 (662)
T ss_dssp CEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE
T ss_pred eEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE
Confidence 45667665 2 32 22232210 11234678999999999998876 68999998772 23445
Q ss_pred cc-CcccceeEEEEcCCCcEEEEeecCC------ceEEEEeeec-CC---ceEEEeecCceeeeeeEEEEcCCCCEEEEE
Q psy4754 152 LM-GHENRVSCLQVSPDGTAFSSGSWDT------TLRCRLFDLR-AD---KEVACYKKDSILFGATSVDFSVSGRLLFAG 220 (304)
Q Consensus 152 ~~-~h~~~v~~v~~sp~~~~las~s~d~------~i~i~~~d~~-~~---~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg 220 (304)
+. .+...+..++|||||+.|+.++.++ .-.+++||+. ++ +.......+. ..+..++|+|||++++++
T Consensus 182 l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~--~~~~~~~~spdg~l~~~~ 259 (662)
T 3azo_A 182 LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE--EAIAQAEWAPDGSLIVAT 259 (662)
T ss_dssp SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT--BCEEEEEECTTSCEEEEE
T ss_pred EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC--ceEcceEECCCCeEEEEE
Confidence 55 6667888899999999999888664 1246899998 45 3322222211 245788999999988888
Q ss_pred eCCC--cEEEEeCCCceeeEEeeccccc--------eEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 221 YNDY--TINVWDSLKCCRVNHLMGHENR--------VSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 221 ~~d~--~i~iwd~~~~~~~~~~~~h~~~--------i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
..++ .|.+||..+++......++... +.+++|+|+++++++++. +++++|..
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 260 DRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 8888 5666676555433322223222 567999999999999998 99999944
No 175
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.79 E-value=1.4e-16 Score=135.61 Aligned_cols=229 Identities=10% Similarity=0.060 Sum_probs=165.0
Q ss_pred eeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 29 ATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 29 i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
..+++|+|+|+ +++++..++.|..||..++ ...+..+...+.+++++++|+++++...++.| .+||..+++....
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i--~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRL--ERQREPGGEWESI 105 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEE--EEECSTTCCEEEE
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeE--EEEcCCCCcEEEE
Confidence 57899999998 7889999999999999877 55666677889999999999988877666664 6899866654332
Q ss_pred Eec--cceeeceeeeEEcCCCCEEEEE----e-------------CCCeEEEecCCccccceeccCcccceeEEEEcCCC
Q psy4754 108 YKK--DSILFGATSVDFSVSGRLLFAG----Y-------------NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 168 (304)
Q Consensus 108 ~~~--~~~~~~~~~~~~s~~~~~l~sg----~-------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~ 168 (304)
... ......+..++++++|+++++. + ..+.|..++.. ..+..+..+...+..++|+|++
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~~~~~gi~~s~dg 183 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDRVKPNGLAFLPSG 183 (296)
T ss_dssp ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCCSSEEEEEECTTS
T ss_pred eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCCCCCccEEECCCC
Confidence 211 1111134578899999988863 2 13567777754 2334445566678899999999
Q ss_pred cEEEEeecCCceEEEEeeec-CCce---EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccc
Q psy4754 169 TAFSSGSWDTTLRCRLFDLR-ADKE---VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 244 (304)
Q Consensus 169 ~~las~s~d~~i~i~~~d~~-~~~~---~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~ 244 (304)
+.+++.+.++.+ ++|++. .++. ...+ .. ....+..++++++|+++++. ++.|.+|+.. ++.+..+..+.
T Consensus 184 ~~lv~~~~~~~i--~~~~~~~~g~~~~~~~~~-~~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~ 256 (296)
T 3e5z_A 184 NLLVSDTGDNAT--HRYCLNARGETEYQGVHF-TV-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQ 256 (296)
T ss_dssp CEEEEETTTTEE--EEEEECSSSCEEEEEEEE-CC-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSS
T ss_pred CEEEEeCCCCeE--EEEEECCCCcCcCCCeEe-eC-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCC
Confidence 988776667764 688886 3332 2222 11 11234678999999987777 7899999976 67777787777
Q ss_pred cceEEEEE-ccCCCEEEEeecCCeeeec
Q psy4754 245 NRVSCLQV-SPDGTAFSSGSWDTTLRDE 271 (304)
Q Consensus 245 ~~i~~l~~-sp~g~~lasgs~D~~i~~~ 271 (304)
. +.+++| +|+++.|..++.++..++-
T Consensus 257 ~-~~~~~f~~~d~~~L~v~t~~~l~~~~ 283 (296)
T 3e5z_A 257 T-TSNLCFGGPEGRTLYMTVSTEFWSIE 283 (296)
T ss_dssp C-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred C-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence 7 999999 6899988888887655543
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.79 E-value=1.2e-15 Score=131.95 Aligned_cols=232 Identities=13% Similarity=0.102 Sum_probs=157.8
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCC----CceEEEEeeeCCCe
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD----TTLRCRLFDLRADK 103 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D----~~i~~~~wd~~~~~ 103 (304)
.+.+++|+++|.+++++..++.|.+||..+++.......+...+.+++++++|+++++...+ +. +..||.....
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~--i~~~d~~~~~ 123 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG--IFAATENGDN 123 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCE--EEEECTTSCS
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCce--EEEEeCCCCE
Confidence 36889999999988899899999999998876554443566789999999999988877655 45 4678887655
Q ss_pred eEeEEeccceeeceeeeEEcCCCCEEEEEeC------CCeEEEecCCccccceeccCcccceeEEEEcCCCcEEE-Eeec
Q psy4754 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYN------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-SGSW 176 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~ 176 (304)
....+........+..+.+++++..+++... .+.|..+|..+.+ +..+..+...+..++|+|+++.++ +.+.
T Consensus 124 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 202 (333)
T 2dg1_A 124 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETT 202 (333)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE-EEEeecCCCcccceEECCCCCEEEEEeCC
Confidence 4322221111123567899999987776553 3567777765433 222333334578899999998554 4445
Q ss_pred CCceEEEEeeecC-CceEEEee-----cCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecccc-----
Q psy4754 177 DTTLRCRLFDLRA-DKEVACYK-----KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN----- 245 (304)
Q Consensus 177 d~~i~i~~~d~~~-~~~~~~~~-----~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~----- 245 (304)
++.+ ++||... ++.+..+. .......+..++++++|+++++...++.|.+||. +++.+..+..+..
T Consensus 203 ~~~i--~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~ 279 (333)
T 2dg1_A 203 ANRL--HRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHM 279 (333)
T ss_dssp GTEE--EEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCS
T ss_pred CCeE--EEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccc
Confidence 6664 6888853 22221110 0000024577999999999888888889999997 4566666655433
Q ss_pred -ceEEEEEccCCCEEEEeecC
Q psy4754 246 -RVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 246 -~i~~l~~sp~g~~lasgs~D 265 (304)
.+.+++|+||+..|..++.+
T Consensus 280 ~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 280 LRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp CBCCEEEECTTSCEEEEEEEC
T ss_pred cCcceEEECCCCCEEEEEeCc
Confidence 68999999998766655444
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.77 E-value=3e-16 Score=149.64 Aligned_cols=248 Identities=13% Similarity=0.074 Sum_probs=168.2
Q ss_pred ceeEEEEcCCCCEEEEeeCCC-----cEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCc-----------
Q psy4754 28 GATSVDFSVSGRLLFAGYNDY-----TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT----------- 91 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg-----~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~----------- 91 (304)
.+..++|||||++||.++.++ +|++||+.+++.......+ ..+..++|+|||+.|+.++.|..
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 478999999999988665543 8999999998876532222 23667999999999998887764
Q ss_pred ---eEEEEeeeCCCee--EeEEeccceeeceeeeEEcCCCCEEEEEeC-----CCeEEEecCCc------cc-cceeccC
Q psy4754 92 ---LRCRLFDLRADKE--VACYKKDSILFGATSVDFSVSGRLLFAGYN-----DYTINVWDSLK------CC-RVNHLMG 154 (304)
Q Consensus 92 ---i~~~~wd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-----dg~i~iwd~~~------~~-~~~~~~~ 154 (304)
-++++|++.+.+. ...+...........+.|+||+++++..+. +..|.+||+.+ +. ....+..
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~ 284 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence 2357899977652 222222111111357889999999888764 67899999865 32 3555666
Q ss_pred cccceeEEEEcCCCcEEEEeecCC--ceEEEEeeecCCce--EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCc--EEE
Q psy4754 155 HENRVSCLQVSPDGTAFSSGSWDT--TLRCRLFDLRADKE--VACYKKDSILFGATSVDFSVSGRLLFAGYNDYT--INV 228 (304)
Q Consensus 155 h~~~v~~v~~sp~~~~las~s~d~--~i~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~--i~i 228 (304)
+...+.. .|+|+|..|+..+.++ ..++++||+.+... ...+-.+.....+..+++++++.++++...++. |.+
T Consensus 285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~ 363 (710)
T 2xdw_A 285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363 (710)
T ss_dssp SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEE
Confidence 6666655 4888988777665432 33457888876531 122222211113467788888888888888885 556
Q ss_pred EeCCCceeeEEeeccccceEEEEEccCCCEEEEe-e---cCCeeeeccccccc
Q psy4754 229 WDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG-S---WDTTLRDEESKNRY 277 (304)
Q Consensus 229 wd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasg-s---~D~~i~~~~~~~~~ 277 (304)
|+..+++.+..+..+.+.|..++++|++..++.. + ...+|..|+...+.
T Consensus 364 ~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 364 HDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 6776777777788888889999999998766532 2 34678888875543
No 178
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.77 E-value=6.3e-16 Score=133.92 Aligned_cols=260 Identities=11% Similarity=0.004 Sum_probs=181.3
Q ss_pred CceeEEeeccccceEeeeecc----ccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC
Q psy4754 3 KNHCRLFDLRADKEVACYKKD----SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~----~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 78 (304)
+++|.+||..+++....+... ........+.+. ++.++++...++.|.+||..+++.+.++. .......+++++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence 789999999999875433111 111225667774 45666777778999999999998888775 346678999989
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccce---eeceeeeEEcCCCCEEEEEe--CCCeEEEecCCccccceecc
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI---LFGATSVDFSVSGRLLFAGY--NDYTINVWDSLKCCRVNHLM 153 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~ 153 (304)
+++.+++...++.| .+||..+.+....++.... ......+++ ++..++.+. .++.|.++|..+.+.+.++.
T Consensus 94 ~g~lyv~~~~~~~v--~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 94 DEKAYVTQIWDYRI--FIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp TTEEEEEEBSCSEE--EEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEECCCCeE--EEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 88666666578775 6899988776655543220 002235566 345555554 48999999998877665544
Q ss_pred CcccceeEEEEcCCCcEEEEeecC----------CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC
Q psy4754 154 GHENRVSCLQVSPDGTAFSSGSWD----------TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 154 ~h~~~v~~v~~sp~~~~las~s~d----------~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d 223 (304)
. ......+.++|+|++++++..+ +. +.++|..+.+....+..... ..+..++++|++++|.++..
T Consensus 170 ~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~--v~~id~~t~~v~~~~~~~~g-~~p~~la~~~d~~~lyv~~~- 244 (328)
T 3dsm_A 170 I-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS--LYRIDAETFTVEKQFKFKLG-DWPSEVQLNGTRDTLYWINN- 244 (328)
T ss_dssp C-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE--EEEEETTTTEEEEEEECCTT-CCCEEEEECTTSCEEEEESS-
T ss_pred c-CCCccceEEcCCCCEEEEECCCccCCccccCCce--EEEEECCCCeEEEEEecCCC-CCceeEEEecCCCEEEEEcc-
Confidence 3 2345788999999987777654 45 46899888776655542211 14588999999998888754
Q ss_pred CcEEEEeCCCceeeEE--eeccccceEEEEEcc-CCCEEEEe----ecCCeeeecccc
Q psy4754 224 YTINVWDSLKCCRVNH--LMGHENRVSCLQVSP-DGTAFSSG----SWDTTLRDEESK 274 (304)
Q Consensus 224 ~~i~iwd~~~~~~~~~--~~~h~~~i~~l~~sp-~g~~lasg----s~D~~i~~~~~~ 274 (304)
.|.+||..+++.... +..+......++++| ++..+++. +.++.|..|+.+
T Consensus 245 -~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 245 -DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp -SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred -EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 899999887664321 222246789999999 67788887 678999999876
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.76 E-value=3.4e-16 Score=135.92 Aligned_cols=220 Identities=11% Similarity=0.030 Sum_probs=152.4
Q ss_pred eeEEEEcCCCCEEEEe---------eCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCC---CceEEEE
Q psy4754 29 ATSVDFSVSGRLLFAG---------YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD---TTLRCRL 96 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg---------~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D---~~i~~~~ 96 (304)
+...++ ||+.++.. +.++.|.+||+.+++.. .+ ..+..++|+|||+.|+..+.+ +...+++
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 677777 88877643 23678999999877643 33 567889999999999887754 4555788
Q ss_pred eeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC---------------------------CCeEEEecCCccccc
Q psy4754 97 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN---------------------------DYTINVWDSLKCCRV 149 (304)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~---------------------------dg~i~iwd~~~~~~~ 149 (304)
||+..++......... +..+.|+|+++.|+.++. ...|.+||+.+++.+
T Consensus 90 ~~~~~g~~~~l~~~~~----~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 90 ADLETLSSKKILEAKN----IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EETTTTEEEEEEEESE----EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EECCCCceEEEEcCCC----ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 8888766554433321 567899999998888763 257899998876653
Q ss_pred eeccCcccceeEEEEcCCCcEEEEeecCC-------ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeC
Q psy4754 150 NHLMGHENRVSCLQVSPDGTAFSSGSWDT-------TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN 222 (304)
Q Consensus 150 ~~~~~h~~~v~~v~~sp~~~~las~s~d~-------~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~ 222 (304)
..+.. . .+..++|+||+ ++++++.+. ...++++| +++.. .+... ..+.. ++|+|++|+.++.
T Consensus 166 ~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~---~~~~~--~spdg~~l~~~~~ 234 (347)
T 2gop_A 166 EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK---VSFYA--VDSDGERILLYGK 234 (347)
T ss_dssp EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE---ESEEE--EEECSSCEEEEEC
T ss_pred eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-EeccC---cceee--ECCCCCEEEEEEc
Confidence 44444 3 78899999999 777776542 33445555 44332 22221 12233 3999999888764
Q ss_pred C--------CcEEEEeCCCceeeEEeeccccceEE-EEEccCCCEEEEeecCCeeeeccccc
Q psy4754 223 D--------YTINVWDSLKCCRVNHLMGHENRVSC-LQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 223 d--------~~i~iwd~~~~~~~~~~~~h~~~i~~-l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+ ..|.+|| +++......+|...+.. +.|+ |+ .+++++.|+.+++| .+.
T Consensus 235 ~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp CSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred cccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 4 3688888 44443334456778886 9999 88 99999999999999 763
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.76 E-value=1.2e-15 Score=129.10 Aligned_cols=223 Identities=12% Similarity=0.146 Sum_probs=154.5
Q ss_pred CCceeEEeeccccceEeeeecc----ccccceeEEEE-cCCCCEEEEeeC-CCcEEEEeCCCceeeeeec-CCcCcEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKD----SILFGATSVDF-SVSGRLLFAGYN-DYTINVWDSLKCCRVNHLM-GHENRVSCL 74 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~----~~~~~i~~~~~-~~~g~~l~tg~~-dg~v~iwd~~~~~~~~~~~-~h~~~V~~l 74 (304)
+++.|++||.. ++....+... .+...+..+++ .+++.++++... ++.|++|| .+++.+..+. .+...+.++
T Consensus 49 ~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i 126 (286)
T 1q7f_A 49 NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGV 126 (286)
T ss_dssp GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEE
T ss_pred CCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEE
Confidence 35679999988 4444444321 12234788999 577877777644 89999999 4566665553 344678999
Q ss_pred EECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC
Q psy4754 75 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 154 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 154 (304)
++.++|+++++...++.| .+||.. ++.+..+........+..++++++++.+++...++.|.+||.. +..+.++..
T Consensus 127 ~~~~~g~l~v~~~~~~~i--~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~ 202 (286)
T 1q7f_A 127 TVDNKGRIIVVECKVMRV--IIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGG 202 (286)
T ss_dssp EECTTSCEEEEETTTTEE--EEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESC
T ss_pred EEeCCCCEEEEECCCCEE--EEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEcc
Confidence 999999988887777774 678854 4444444322122235789999999877777778999999964 344444433
Q ss_pred --cccceeEEEEcCCCcEEEEeecCC-ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 155 --HENRVSCLQVSPDGTAFSSGSWDT-TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 155 --h~~~v~~v~~sp~~~~las~s~d~-~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
+...+..++++|+++++++...++ .| .+||.. ++.+..+........+..++++|+|+++++ +.++.|++|+.
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i--~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNHNNFNL--TIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECSSSCEE--EEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred CCccCCCcEEEECCCCCEEEEeCCCCEEE--EEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence 346789999999999888887775 65 689854 455555543322223578999999998877 57899999987
Q ss_pred CCc
Q psy4754 232 LKC 234 (304)
Q Consensus 232 ~~~ 234 (304)
...
T Consensus 279 ~~~ 281 (286)
T 1q7f_A 279 VQL 281 (286)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.75 E-value=8.3e-16 Score=128.70 Aligned_cols=241 Identities=9% Similarity=0.034 Sum_probs=165.2
Q ss_pred ceeEEEEcCCCCEEE-EeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 28 GATSVDFSVSGRLLF-AGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~-tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
...+++++++|.+++ +...++.|.+||..+.........+...+.++++.++++++++.. ++.| ..||...... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i--~~~d~~~~~~-~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRV--VTLAAGSNNQ-T 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEE--EEECTTCSCC-E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEE--EEEeCCCceE-e
Confidence 567899999999887 657889999999866543222223345678899999999777765 6664 6788765432 2
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEee
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d 186 (304)
.+... ....+..+++++++..+++...++.|.+|+..+.............+.+++++|+++.+++...++.+ ..||
T Consensus 101 ~~~~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i--~~~~ 177 (270)
T 1rwi_B 101 VLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRV--VKLE 177 (270)
T ss_dssp ECCCC-SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEE--EEEC
T ss_pred eeecC-CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEE--EEEe
Confidence 22111 11235678899999877776778899999865543322222333467889999999977776666664 5788
Q ss_pred ecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCC
Q psy4754 187 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~ 266 (304)
............. ...+..++++++|.++++...++.|.+|+............+...+.+++++|+|+.+++.+.++
T Consensus 178 ~~~~~~~~~~~~~--~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 178 AESNNQVVLPFTD--ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp TTTCCEEECCCSS--CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred cCCCceEeecccC--CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCC
Confidence 7765433221111 13467899999998888887788999999865443322223446789999999999999999999
Q ss_pred eeeeccccccc
Q psy4754 267 TLRDEESKNRY 277 (304)
Q Consensus 267 ~i~~~~~~~~~ 277 (304)
.|+++++..+.
T Consensus 256 ~v~~~~~~~~~ 266 (270)
T 1rwi_B 256 RVVKLTSLEHH 266 (270)
T ss_dssp EEEEECCCGGG
T ss_pred EEEEEcCCCcc
Confidence 99999876654
No 182
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=1e-15 Score=134.40 Aligned_cols=245 Identities=12% Similarity=0.020 Sum_probs=167.4
Q ss_pred CceeEEeeccccceEeeeeccc----cccceeEEEEcCCCCEEEEeeC--CCcEEEEeCCCceeeee-ecCCcCcEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDS----ILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNH-LMGHENRVSCLQ 75 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~----~~~~i~~~~~~~~g~~l~tg~~--dg~v~iwd~~~~~~~~~-~~~h~~~V~~l~ 75 (304)
+++|.+||+.+.+....+.... .......++|+|+|++|+++.. +++|.+||+.+++.+.. +... ....+.
T Consensus 80 ~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~ 157 (361)
T 2oiz_A 80 SDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVI 157 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEE
T ss_pred CCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeE
Confidence 4679999999988765554321 1123567999999999988763 68999999999988777 5422 223356
Q ss_pred ECCCC-CeEEEEeCCCceEEEEeeeCC-CeeEeEEeccceee----ceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc-
Q psy4754 76 VSPDG-TAFSSGSWDTTLRCRLFDLRA-DKEVACYKKDSILF----GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR- 148 (304)
Q Consensus 76 ~s~d~-~~l~sgs~D~~i~~~~wd~~~-~~~~~~~~~~~~~~----~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~- 148 (304)
+.|++ ..+++.+.|+.+ ..|++.. ++........ ..+ ....+.+++++..++..+.++.|.++|+.....
T Consensus 158 ~~p~~~~~~~~~~~dg~~--~~v~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~ 234 (361)
T 2oiz_A 158 PQPNRPRSFMTICGDGGL--LTINLGEDGKVASQSRSK-QMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVK 234 (361)
T ss_dssp ECTTSSSEEEEEETTSSE--EEEEECTTSSEEEEEECC-CCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCE
T ss_pred EcCCCCeeEEEECCCCcE--EEEEECCCCcEeeecccc-ceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCce
Confidence 77765 577888889885 5677754 3332111100 000 011233467777777778899999999764321
Q ss_pred -ceecc--C----c----ccceeEEEEcCCCcEEEEeec-C--------CceEEEEeeecCCceEEEeecCceeeeeeEE
Q psy4754 149 -VNHLM--G----H----ENRVSCLQVSPDGTAFSSGSW-D--------TTLRCRLFDLRADKEVACYKKDSILFGATSV 208 (304)
Q Consensus 149 -~~~~~--~----h----~~~v~~v~~sp~~~~las~s~-d--------~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 208 (304)
...+. . + ......++|+|+++.++.+.. + ....+++||+.+.+.+..+..+. +..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~i 310 (361)
T 2oiz_A 235 VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSM 310 (361)
T ss_dssp EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEE
T ss_pred ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEE
Confidence 11110 0 0 111223789999877665432 1 22346799999999888887664 5899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCc--eeeEEeeccccceEEEEEccCCC
Q psy4754 209 DFSVSGRLLFAGYNDYTINVWDSLKC--CRVNHLMGHENRVSCLQVSPDGT 257 (304)
Q Consensus 209 ~~s~~g~~l~sg~~d~~i~iwd~~~~--~~~~~~~~h~~~i~~l~~sp~g~ 257 (304)
+|+|+|++|+++.. ++|.+||..++ +.+.++..+......++++|+|+
T Consensus 311 a~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 311 TIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999998876 99999999999 98888877777889999999985
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.73 E-value=5.1e-16 Score=147.75 Aligned_cols=245 Identities=13% Similarity=-0.019 Sum_probs=161.2
Q ss_pred cceeEEEEcCCCCEEE-----EeeCCCcEEEEeCCCceeeeeecCCcCcE--EEEEECCCCCeEEEEeCCCc--------
Q psy4754 27 FGATSVDFSVSGRLLF-----AGYNDYTINVWDSLKCCRVNHLMGHENRV--SCLQVSPDGTAFSSGSWDTT-------- 91 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~-----tg~~dg~v~iwd~~~~~~~~~~~~h~~~V--~~l~~s~d~~~l~sgs~D~~-------- 91 (304)
..+.+++|||||++|| .|+.+.+|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence 3488999999999988 55566799999999987651 1122233 67899999999999988764
Q ss_pred ---eEEEEeeeCCCee--EeEEeccceeeceeeeEEcCCCCEEEEEeCCC----eEEEecCCccccceeccCcccceeEE
Q psy4754 92 ---LRCRLFDLRADKE--VACYKKDSILFGATSVDFSVSGRLLFAGYNDY----TINVWDSLKCCRVNHLMGHENRVSCL 162 (304)
Q Consensus 92 ---i~~~~wd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg----~i~iwd~~~~~~~~~~~~h~~~v~~v 162 (304)
-++++|++.+... ...+...........+.++|||++++..+.++ .|.+||..+. ....+..+...+...
T Consensus 199 ~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~~ 277 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-DFRLLVKGVGAKYEV 277 (695)
T ss_dssp GGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-SCEEEEECSSCCEEE
T ss_pred CCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-ceEEeecCCCceEEE
Confidence 2357899987652 22232211111245788999999998877665 7777775443 344455555566666
Q ss_pred EEcCCCcEEEEeecC-CceEEEEeeecCCce---EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC-Cceee
Q psy4754 163 QVSPDGTAFSSGSWD-TTLRCRLFDLRADKE---VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL-KCCRV 237 (304)
Q Consensus 163 ~~sp~~~~las~s~d-~~i~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~-~~~~~ 237 (304)
.+ |++.+++....+ ..-++++||+.+.+. ....... ....+..++++ ++.++++...|+..+||... ++..+
T Consensus 278 ~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 354 (695)
T 2bkl_A 278 HA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED-SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPV 354 (695)
T ss_dssp EE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC-SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred Ee-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCee
Confidence 66 566644444333 123457888876542 2222221 11234567777 77888889899998888544 35555
Q ss_pred EEeecc-ccceEEEEEccCCCEEE----EeecCCeeeeccccccc
Q psy4754 238 NHLMGH-ENRVSCLQVSPDGTAFS----SGSWDTTLRDEESKNRY 277 (304)
Q Consensus 238 ~~~~~h-~~~i~~l~~sp~g~~la----sgs~D~~i~~~~~~~~~ 277 (304)
..+..+ .+.|..++++|++..++ +...+.+|.+|+...+-
T Consensus 355 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 355 RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 666655 67788899999998777 33345788899876543
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.72 E-value=2.6e-15 Score=129.77 Aligned_cols=236 Identities=7% Similarity=0.022 Sum_probs=164.0
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
+.++.|++++..++..+.++.++.| .++....+..+...+.+++|++++++++++..++.| ++||..+++.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i--~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNI--FKINPETKEIKRPF 82 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEE--EEECTTTCCEEEEE
T ss_pred cceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEE--EEEeCCCCcEEEEe
Confidence 6778899988877777889999999 345566666777788999999999988888888874 68998766544332
Q ss_pred eccceeeceeeeEEcCCCCEEEEEeCC----CeEEEecCCccccceec--cCcccceeEEEEcCCCcEEEEeecC----C
Q psy4754 109 KKDSILFGATSVDFSVSGRLLFAGYND----YTINVWDSLKCCRVNHL--MGHENRVSCLQVSPDGTAFSSGSWD----T 178 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~~l~sg~~d----g~i~iwd~~~~~~~~~~--~~h~~~v~~v~~sp~~~~las~s~d----~ 178 (304)
... ...+..++++++++++++...+ +.|.+||..+......+ ..+...+..++++|+++++++...+ .
T Consensus 83 ~~~--~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 83 VSH--KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp ECS--SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eCC--CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 221 1235788999999877776666 68999998765432122 1244578999999999888776532 1
Q ss_pred ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEE-EEEeCCCcEEEEeCCC-ceeeEE--------eeccccceE
Q psy4754 179 TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLK-CCRVNH--------LMGHENRVS 248 (304)
Q Consensus 179 ~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~sg~~d~~i~iwd~~~-~~~~~~--------~~~h~~~i~ 248 (304)
...++.+|..+.+....... ...+..++|+|+|+.| ++...++.|.+||..+ +..+.. +.++ ..+.
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~ 236 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPD 236 (333)
T ss_dssp CEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEE
T ss_pred CceEEEEeCCCCEEEEeecC---CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCC
Confidence 23345666554333222111 1235789999999865 4455678999999853 222211 1222 4678
Q ss_pred EEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 249 CLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 249 ~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
.++++++|.++++...++.|..|+.+.
T Consensus 237 ~i~~d~~G~l~v~~~~~~~v~~~d~~g 263 (333)
T 2dg1_A 237 SCCIDSDDNLYVAMYGQGRVLVFNKRG 263 (333)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred ceEECCCCCEEEEEcCCCEEEEECCCC
Confidence 899999999998888889999998743
No 185
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.72 E-value=3.5e-15 Score=129.18 Aligned_cols=231 Identities=11% Similarity=0.088 Sum_probs=158.1
Q ss_pred cCcEEEEEECCCCCeEEEEeCCCce----------------------EEEEeeeCCCeeEeEEeccceeeceeeeEEcCC
Q psy4754 68 ENRVSCLQVSPDGTAFSSGSWDTTL----------------------RCRLFDLRADKEVACYKKDSILFGATSVDFSVS 125 (304)
Q Consensus 68 ~~~V~~l~~s~d~~~l~sgs~D~~i----------------------~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 125 (304)
-+.+.+++++|+|+++++.+.++.+ .+.+||..+++.+..+... .......++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN-LFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT-TCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC-ccCCceEEEECCC
Confidence 3679999999999999988877432 2578998777665544321 2224568899999
Q ss_pred CCEEEEEeCCCeEEEecCCccc-cceec---------cCcccceeEEEEcC-CCcEEEEee-cCCceEEEEeeecCCceE
Q psy4754 126 GRLLFAGYNDYTINVWDSLKCC-RVNHL---------MGHENRVSCLQVSP-DGTAFSSGS-WDTTLRCRLFDLRADKEV 193 (304)
Q Consensus 126 ~~~l~sg~~dg~i~iwd~~~~~-~~~~~---------~~h~~~v~~v~~sp-~~~~las~s-~d~~i~i~~~d~~~~~~~ 193 (304)
++.+++...++.|++||..... .+..+ .++...+..|+++| +++++++.+ .++.| ++|| ..++.+
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I--~~~~-~~g~~~ 178 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI--VQFS-PSGKFV 178 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE--EEEC-TTSCEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE--EEEc-CCCCEE
Confidence 9988888889999999975432 33333 34455789999999 888888876 57775 6888 445555
Q ss_pred EEeecC--------ceeeeeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCceeeEEee--ccccceEEEEEcc------CC
Q psy4754 194 ACYKKD--------SILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSP------DG 256 (304)
Q Consensus 194 ~~~~~~--------~~~~~~~~~~~s~~-g~~l~sg~~d~~i~iwd~~~~~~~~~~~--~h~~~i~~l~~sp------~g 256 (304)
..+... .....+..++++|+ +.++++...++.|++|+..+++.+..+. .+...+.+++|+| +|
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g 258 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNG 258 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEEC
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCC
Confidence 444211 12233689999998 8888888888999999998888887774 4667889999999 44
Q ss_pred CEEEEeecCCeeeeccccccchhheeeccccCCceeEEEEEecCCc
Q psy4754 257 TAFSSGSWDTTLRDEESKNRYMQYLLRSRITKPTQGLTVYFQDRGR 302 (304)
Q Consensus 257 ~~lasgs~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (304)
..+++.+.+.+|++|+...+.....+.........+-.+++.|+|.
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT 304 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC
Confidence 4444444556899998766543333321112222245566677664
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.72 E-value=8.6e-15 Score=123.66 Aligned_cols=214 Identities=12% Similarity=0.017 Sum_probs=165.4
Q ss_pred CCCEEEEeeCCCcEEEEeCCCceeeeeecCCc-CcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceee
Q psy4754 37 SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILF 115 (304)
Q Consensus 37 ~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~ 115 (304)
.+++|++++.|+.|.+||..+|+.+-.+..+. ..+.++++.|+|++|++ .++. +..||. +++.+..++.... .
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~--V~~~d~-~G~~~W~~~~~~~-~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKG--AKMITR-DGRELWNIAAPAG-C 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSE--EEEECT-TSCEEEEEECCTT-C
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCC--EEEECC-CCCEEEEEcCCCC-c
Confidence 46899999999999999999999988887765 47889999999999884 3555 467888 6788877765311 1
Q ss_pred ceeeeEEcCCCCEEEEEeC-CCeEEEecCCccccceecc------CcccceeEEEEcCCCcEEEEeecCCceEEEEeeec
Q psy4754 116 GATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCRVNHLM------GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 188 (304)
Q Consensus 116 ~~~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~------~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~ 188 (304)
.+.++.+.++++.+++.+. ++.|..+|. +++.+.++. ++......+++.++|+++++.+.++.+ ..||..
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v--~~~d~~ 154 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEV--REIAPN 154 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEE--EEECTT
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEE--EEECCC
Confidence 3457788999999999877 778888885 444443322 233455667889999999999888885 589987
Q ss_pred CCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccc------cceEEEEEccCCCEEEEe
Q psy4754 189 ADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE------NRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~------~~i~~l~~sp~g~~lasg 262 (304)
++.+-.+.... .+.++...++|++++++..++.|..+|..+++.+.++..+. ..+..++..++|..+++.
T Consensus 155 -G~~~w~~~~~~---~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 155 -GQLLNSVKLSG---TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp -SCEEEEEECSS---CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred -CCEEEEEECCC---CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 77776665442 24567789999999999888899999999899988886542 237899999999999987
Q ss_pred e
Q psy4754 263 S 263 (304)
Q Consensus 263 s 263 (304)
+
T Consensus 231 ~ 231 (276)
T 3no2_A 231 W 231 (276)
T ss_dssp E
T ss_pred c
Confidence 4
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.69 E-value=5.1e-13 Score=112.93 Aligned_cols=238 Identities=11% Similarity=0.092 Sum_probs=165.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee-eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeE
Q psy4754 27 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV 105 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~ 105 (304)
..+.++++.++|.++++...++.|.+||.. ++... .+..+...+.++++.++++++++...++.+ ..||... + .
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i--~~~~~~g-~-~ 89 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKI--GRITKKG-I-I 89 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE--EEECTTS-C-E
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeE--EEECCCC-c-E
Confidence 458899999999988887778999999988 54332 122345778999999999988887666664 5677652 2 2
Q ss_pred eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce-eccCcccceeEEEEcCCCcEEEEeecCCceEEEE
Q psy4754 106 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRL 184 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~ 184 (304)
..+........+..+.+.+++..+++...++.|.+||. ++.... ....+...+..++++|+++.+++...++.+ ..
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i--~~ 166 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI--GR 166 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE--EE
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE--EE
Confidence 22221111123567889999987777777889999997 333221 223344568999999999888776656664 57
Q ss_pred eeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEE-eeccccceEEEEEccCCCEEEEee
Q psy4754 185 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 185 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~-~~~h~~~i~~l~~sp~g~~lasgs 263 (304)
+|. +++... +........+..+++.++|.++++...++.|..||. ++..... ...+...+.+++++|+|..+++..
T Consensus 167 ~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 243 (299)
T 2z2n_A 167 ITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW 243 (299)
T ss_dssp ECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred EcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc
Confidence 887 444332 211111234678999999998888777889999998 5543321 233557889999999999888876
Q ss_pred cCCeeeeccccc
Q psy4754 264 WDTTLRDEESKN 275 (304)
Q Consensus 264 ~D~~i~~~~~~~ 275 (304)
.++.|..++...
T Consensus 244 ~~~~i~~~d~~g 255 (299)
T 2z2n_A 244 GANKIGRLTSNN 255 (299)
T ss_dssp TTTEEEEEETTT
T ss_pred CCceEEEECCCC
Confidence 788999998743
No 188
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.69 E-value=3.7e-13 Score=113.83 Aligned_cols=253 Identities=9% Similarity=0.010 Sum_probs=168.3
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee-eeecCCcCcEEEEEECCCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-NHLMGHENRVSCLQVSPDGT 81 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~-~~~~~h~~~V~~l~~s~d~~ 81 (304)
++.|.+||.. ++.. .+........+.++++.++|.++++...++.|..||.. ++.. ..+......+.++++.++++
T Consensus 35 ~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~ 111 (299)
T 2z2n_A 35 ANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGD 111 (299)
T ss_dssp TTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC
T ss_pred CCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCC
Confidence 5678999988 5432 22222223458899999999988888778999999986 3321 11223456788999999998
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee-ccCccccee
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRVS 160 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~ 160 (304)
++++...++.+ ..||. +++.. .+........+..+.+.+++...++...++.|..||. +++.... ...+...+.
T Consensus 112 l~v~~~~~~~i--~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 186 (299)
T 2z2n_A 112 IWFTEMNGNRI--GRITD-DGKIR-EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPV 186 (299)
T ss_dssp EEEEETTTTEE--EEECT-TCCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred EEEEecCCceE--EEECC-CCCEE-EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcce
Confidence 88887666664 56777 33322 2221111123567889999987777666789999997 4433221 233445688
Q ss_pred EEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 161 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 161 ~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
+++++++++.+++...++.+ ..||. +++.. .+........+..++++++|+++++...++.|..||. ++. +..+
T Consensus 187 ~i~~~~~g~l~v~~~~~~~i--~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~ 260 (299)
T 2z2n_A 187 GITKGNDDALWFVEIIGNKI--GRITT-SGEIT-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEY 260 (299)
T ss_dssp EEEECTTSSEEEEETTTTEE--EEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEE
T ss_pred eEEECCCCCEEEEccCCceE--EEECC-CCcEE-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEE
Confidence 99999999877766556664 57887 44432 2322211234678999999998777767789999998 443 3333
Q ss_pred --eccccceEEEEEccCCCEEEEeecCCeeee
Q psy4754 241 --MGHENRVSCLQVSPDGTAFSSGSWDTTLRD 270 (304)
Q Consensus 241 --~~h~~~i~~l~~sp~g~~lasgs~D~~i~~ 270 (304)
..+...+.++++ ++|..+++.+.++.+++
T Consensus 261 ~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 261 PIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp ECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred eCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 345678999999 99998887664444443
No 189
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=8.1e-14 Score=128.95 Aligned_cols=266 Identities=11% Similarity=0.042 Sum_probs=182.5
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCC--CceeeeeecCCcCcEEEEEEC--
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL--KCCRVNHLMGHENRVSCLQVS-- 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~--~~~~~~~~~~h~~~V~~l~~s-- 77 (304)
++++|.++|..+++.+..+... .....+.|+|||+++++++.|+.|.+||+. +++.+..+.... ....++|+
T Consensus 175 ~~~~V~viD~~t~~v~~~i~~g---~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~ 250 (567)
T 1qks_A 175 DAGQIALIDGSTYEIKTVLDTG---YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKM 250 (567)
T ss_dssp TTTEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCS
T ss_pred CCCeEEEEECCCCeEEEEEeCC---CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccc
Confidence 4689999999999887766532 235689999999999999999999999995 777777766533 35789999
Q ss_pred --CCCCeEEEEeC-CCceEEEEeeeCCCeeEeEEeccce---------eeceeeeEEcCCCCEE-EEEeCCCeEEEecCC
Q psy4754 78 --PDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSI---------LFGATSVDFSVSGRLL-FAGYNDYTINVWDSL 144 (304)
Q Consensus 78 --~d~~~l~sgs~-D~~i~~~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~s~~~~~l-~sg~~dg~i~iwd~~ 144 (304)
|||++++.+.. ++++ .++|..+.+.+..+..... ...+..+..++++..+ +....+|.|.++|..
T Consensus 251 ~~pDGk~l~v~n~~~~~v--~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~ 328 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQY--VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 328 (567)
T ss_dssp TTCTTTEEEEEEEETTEE--EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred cCCCCCEEEEEEccCCeE--EEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecC
Confidence 69998876654 5775 6889888777766543211 0023456677775554 445567999999976
Q ss_pred cccc--ceeccCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeec-CceeeeeeEEE-EcCC-CCEEE
Q psy4754 145 KCCR--VNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKK-DSILFGATSVD-FSVS-GRLLF 218 (304)
Q Consensus 145 ~~~~--~~~~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~-~s~~-g~~l~ 218 (304)
.... +..+ ........+.|+|++++|+++. .++.| .++|+.+.+.+..... .....+-.... ++|+ +..++
T Consensus 329 ~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V--~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~ 405 (567)
T 1qks_A 329 DLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKL--VVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA 405 (567)
T ss_dssp CSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEE--EEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEE
T ss_pred CCccceeeee-eccccccCceECCCCCEEEEEeCCCCeE--EEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEE
Confidence 5322 1121 2233466789999999877665 45554 6899999887666654 33222111222 5787 55555
Q ss_pred EEe-CCCcEEEEeCCC-------ceeeEEeeccccceEEEEEccCCCEEEEeec-------CCeeeecccccc
Q psy4754 219 AGY-NDYTINVWDSLK-------CCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-------DTTLRDEESKNR 276 (304)
Q Consensus 219 sg~-~d~~i~iwd~~~-------~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~-------D~~i~~~~~~~~ 276 (304)
++. .+++|.++|..+ .+.+.++......-.-++++|++++|..... ..+|.++|..+.
T Consensus 406 t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 406 TSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred eCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 554 468999999876 6677777765433345788999998887653 358888887543
No 190
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.68 E-value=6e-14 Score=119.85 Aligned_cols=238 Identities=14% Similarity=0.072 Sum_probs=160.6
Q ss_pred eeEEEEcCCCCEEEE-------eeCCCcEEEEeCCCceeeeeec----CCcCcEEEEEECCC-CCeEEEEeCCCceEEEE
Q psy4754 29 ATSVDFSVSGRLLFA-------GYNDYTINVWDSLKCCRVNHLM----GHENRVSCLQVSPD-GTAFSSGSWDTTLRCRL 96 (304)
Q Consensus 29 i~~~~~~~~g~~l~t-------g~~dg~v~iwd~~~~~~~~~~~----~h~~~V~~l~~s~d-~~~l~sgs~D~~i~~~~ 96 (304)
..+++|+++|.++++ +..++.|.+||..+++...... ++...+.++++.++ ++++++...+ . +..
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~-~--l~~ 96 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL-G--LLV 96 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT-E--EEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC-C--EEE
Confidence 578999999998888 6788999999987776432211 25577899999999 7766655433 3 467
Q ss_pred eeeCCCeeEeE-Eecc--ceeeceeeeEEcCCCCEEEEEeCC---------------CeEEEecCCccccceeccCcccc
Q psy4754 97 FDLRADKEVAC-YKKD--SILFGATSVDFSVSGRLLFAGYND---------------YTINVWDSLKCCRVNHLMGHENR 158 (304)
Q Consensus 97 wd~~~~~~~~~-~~~~--~~~~~~~~~~~s~~~~~l~sg~~d---------------g~i~iwd~~~~~~~~~~~~h~~~ 158 (304)
||.. ++.... .... .....+..++++++++..++...+ +.|..||.. ++ ...+..+...
T Consensus 97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~ 173 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQVDTAFQF 173 (314)
T ss_dssp EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEEEEEESS
T ss_pred EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEeccCCCC
Confidence 8877 443222 1111 111235688999999877766544 578888754 32 2223333445
Q ss_pred eeEEEEc----CCCcEEE-EeecCCceEEEEeeec-CCce-----EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEE
Q psy4754 159 VSCLQVS----PDGTAFS-SGSWDTTLRCRLFDLR-ADKE-----VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTIN 227 (304)
Q Consensus 159 v~~v~~s----p~~~~la-s~s~d~~i~i~~~d~~-~~~~-----~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~ 227 (304)
...++++ |+++.+. +...++.+ ++||.. .++. ...+.... ...+..++++++|+++++...++.|.
T Consensus 174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i--~~~~~~~~g~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 174 PNGIAVRHMNDGRPYQLIVAETPTKKL--WSYDIKGPAKIENKKVWGHIPGTH-EGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEE--EEEEEEETTEEEEEEEEEECCCCS-SCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred cceEEEecccCCCCCEEEEEECCCCeE--EEEECCCCCccccceEEEECCCCC-CCCCCceEECCCCCEEEEEcCCCEEE
Confidence 6889999 9996554 44456664 678875 3321 11111110 02357789999999999888888999
Q ss_pred EEeCCCceeeEEeeccccceEEEEEccCCC-EEEEeecCCeeeeccccc
Q psy4754 228 VWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 228 iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~lasgs~D~~i~~~~~~~ 275 (304)
+||..+++.+..+..+...+.+++|+|+|+ .+++...++.|..++...
T Consensus 251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999886777777777778899999999999 555555667888777653
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=9.1e-14 Score=132.51 Aligned_cols=223 Identities=11% Similarity=0.002 Sum_probs=153.0
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCc----------------EEEEeCCCcee----eeee
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT----------------INVWDSLKCCR----VNHL 64 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~----------------v~iwd~~~~~~----~~~~ 64 (304)
+|++||+.+++...... ....+..++|+|||+.|+.++.++. |++|++.+++. +...
T Consensus 152 ~i~v~d~~tg~~~~~~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~ 228 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVL---ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF 228 (710)
T ss_dssp EEEEEETTTTEEEEEEE---EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC
T ss_pred EEEEEECCCCCCCcccc---cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc
Confidence 89999999998754211 1122678999999999988888776 99999987652 2222
Q ss_pred cCCcCcEEEEEECCCCCeEEEEeCCC---ceEEEEeeeCC------Ce-eEeEEeccceeeceeeeEEcCCCCEEEEEeC
Q psy4754 65 MGHENRVSCLQVSPDGTAFSSGSWDT---TLRCRLFDLRA------DK-EVACYKKDSILFGATSVDFSVSGRLLFAGYN 134 (304)
Q Consensus 65 ~~h~~~V~~l~~s~d~~~l~sgs~D~---~i~~~~wd~~~------~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~ 134 (304)
..|...+..+.|+|||++|+..+.+. .-.+++||+.. +. ....+..... .. ...++++++.++..+.
T Consensus 229 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 229 PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE--GE-YDYVTNEGTVFTFKTN 305 (710)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS--SC-EEEEEEETTEEEEEEC
T ss_pred CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC--cE-EEEEeccCCEEEEEEC
Confidence 33566788999999999888776522 23468899875 32 2333332211 11 2247888888877655
Q ss_pred C----CeEEEecCCccc--cceeccCccc--ceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeee
Q psy4754 135 D----YTINVWDSLKCC--RVNHLMGHEN--RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGAT 206 (304)
Q Consensus 135 d----g~i~iwd~~~~~--~~~~~~~h~~--~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~ 206 (304)
. +.|.+||+.+.. ....+..|.. .+..++|++++.++++...|+..++++|++.+++.+..+... ...+.
T Consensus 306 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~ 383 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVV 383 (710)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEE
T ss_pred CCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEE
Confidence 3 369999987653 2345555544 678899998888899999999877788888666655544433 23457
Q ss_pred EEEEcCCCCEEEEE-e---CCCcEEEEeCCCce
Q psy4754 207 SVDFSVSGRLLFAG-Y---NDYTINVWDSLKCC 235 (304)
Q Consensus 207 ~~~~s~~g~~l~sg-~---~d~~i~iwd~~~~~ 235 (304)
.++++|+++.++.. + ..++|..||+.+++
T Consensus 384 ~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 384 GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 78899999766543 2 23689999987765
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.64 E-value=9.2e-14 Score=120.24 Aligned_cols=233 Identities=9% Similarity=-0.015 Sum_probs=159.0
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCc-----CcEEEEEEC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-----NRVSCLQVS 77 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~-----~~V~~l~~s 77 (304)
+++|.+||..+++.+..+.. ......+++++++.++++...++.|.+||+.+++....+.... .....+++
T Consensus 63 ~~~v~viD~~t~~~~~~i~~---~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 63 SHVIFAIDINTFKEVGRITG---FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ- 138 (328)
T ss_dssp GTEEEEEETTTCCEEEEEEC---CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-
T ss_pred CCEEEEEECcccEEEEEcCC---CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-
Confidence 57899999999988766531 2347889999998666666589999999999988776654322 14456777
Q ss_pred CCCCeEEEEe-CCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC----------CeEEEecCCcc
Q psy4754 78 PDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND----------YTINVWDSLKC 146 (304)
Q Consensus 78 ~d~~~l~sgs-~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d----------g~i~iwd~~~~ 146 (304)
.+++.+++.. .+++ +.++|..+.+....+.... ....+.++++++++++...+ +.|.++|..+.
T Consensus 139 ~~~~lyv~~~~~~~~--v~viD~~t~~~~~~i~~g~---~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~ 213 (328)
T 3dsm_A 139 YGKYVYVNCWSYQNR--ILKIDTETDKVVDELTIGI---QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF 213 (328)
T ss_dssp ETTEEEEEECTTCCE--EEEEETTTTEEEEEEECSS---CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT
T ss_pred ECCEEEEEcCCCCCE--EEEEECCCCeEEEEEEcCC---CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC
Confidence 3444444433 3666 4789998887766654322 24578899999877766544 78999998877
Q ss_pred ccceeccCc-ccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEE--EeecCceeeeeeEEEEcC-CCCEEEEE--
Q psy4754 147 CRVNHLMGH-ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA--CYKKDSILFGATSVDFSV-SGRLLFAG-- 220 (304)
Q Consensus 147 ~~~~~~~~h-~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~s~-~g~~l~sg-- 220 (304)
+....+.-. ...+..++++|+++.+..+.. . +.++|..+++... ..... ...+..++++| ++.++++.
T Consensus 214 ~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~--v~~~d~~t~~~~~~~~~~~~--~~~p~gi~vdp~~g~lyva~~~ 287 (328)
T 3dsm_A 214 TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D--IWRMPVEADRVPVRPFLEFR--DTKYYGLTVNPNNGEVYVADAI 287 (328)
T ss_dssp EEEEEEECCTTCCCEEEEECTTSCEEEEESS--S--EEEEETTCSSCCSSCSBCCC--SSCEEEEEECTTTCCEEEEECT
T ss_pred eEEEEEecCCCCCceeEEEecCCCEEEEEcc--E--EEEEECCCCceeeeeeecCC--CCceEEEEEcCCCCeEEEEccc
Confidence 655444321 236889999999988777654 4 4689987766421 11110 12457899999 66777776
Q ss_pred --eCCCcEEEEeCCCceeeEEeeccccceEEEEE
Q psy4754 221 --YNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 252 (304)
Q Consensus 221 --~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 252 (304)
..++.|.+||.. ++.+.++..- .....++|
T Consensus 288 ~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 288 DYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp TSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred ccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence 677899999987 7777776532 23345555
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=6.4e-13 Score=112.13 Aligned_cols=230 Identities=11% Similarity=0.075 Sum_probs=163.6
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCC-cCcEEEEEECCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-ENRVSCLQVSPDG 80 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~s~d~ 80 (304)
++++|.+||..+++.+-.+..+.. ..+.+++++|+|+++++ .++.|..||. +++.+..+..+ ...+.++.+.++|
T Consensus 13 ~~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG 88 (276)
T 3no2_A 13 GWNKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDG 88 (276)
T ss_dssp TCSEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTS
T ss_pred CCCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCC
Confidence 578999999999998766654321 24788999999999983 5778999999 78888777765 3578899999999
Q ss_pred CeEEEEeC-CCceEEEEeeeCCCeeEeEEeccce----eeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCc
Q psy4754 81 TAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSI----LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 155 (304)
Q Consensus 81 ~~l~sgs~-D~~i~~~~wd~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 155 (304)
+.+++.+. ++. +..+|. +++.+..+..... ......+.+.++++++++...++.|..||.. ++.+-++...
T Consensus 89 ~~lv~~~~~~~~--v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~ 164 (276)
T 3no2_A 89 NALVAWCGHPST--ILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS 164 (276)
T ss_dssp CEEEEEESTTEE--EEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS
T ss_pred CEEEEecCCCCE--EEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC
Confidence 99999876 433 345564 5666665543211 1123356778999999999999999999987 7766665543
Q ss_pred ccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc----eeeeeeEEEEcCCCCEEEEEeCC--------
Q psy4754 156 ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS----ILFGATSVDFSVSGRLLFAGYND-------- 223 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~~g~~l~sg~~d-------- 223 (304)
..+.++.+.++++.+++++.++.+ ..+|..+++.+-.+.... ....+..++..++|.++++....
T Consensus 165 -~~~~~~~~~~~g~~~v~~~~~~~v--~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~ 241 (276)
T 3no2_A 165 -GTPFSSAFLDNGDCLVACGDAHCF--VQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKG 241 (276)
T ss_dssp -SCCCEEEECTTSCEEEECBTTSEE--EEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGS
T ss_pred -CCccceeEcCCCCEEEEeCCCCeE--EEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcccccccc
Confidence 456678889999999988877764 588988788766664322 12336788889999998887532
Q ss_pred CcEEEEeC-CCceeeEEeec
Q psy4754 224 YTINVWDS-LKCCRVNHLMG 242 (304)
Q Consensus 224 ~~i~iwd~-~~~~~~~~~~~ 242 (304)
+..+++++ .+++.+-++..
T Consensus 242 ~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 242 KHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp CCCSEEEECTTSBEEEEECC
T ss_pred CCceEEEECCCCCEEEEecC
Confidence 12344444 34555555544
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.63 E-value=7.5e-14 Score=133.72 Aligned_cols=243 Identities=15% Similarity=0.025 Sum_probs=158.3
Q ss_pred ceeEEEEcCCCCEEEEeeCC-----CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCce----------
Q psy4754 28 GATSVDFSVSGRLLFAGYND-----YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL---------- 92 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~d-----g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i---------- 92 (304)
.+..++|||||++||.++.+ .+|++||+.+++.+.. ..+...+..++|+|| +.|+.++.|...
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 57889999999998876554 4699999999876543 112222357899999 988888876642
Q ss_pred --EEEEeeeCCCee--EeEEeccceeeceeeeEEcCCCCEEEEEeCC-----CeEEEecCCccc-c-ceeccCcccceeE
Q psy4754 93 --RCRLFDLRADKE--VACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC-R-VNHLMGHENRVSC 161 (304)
Q Consensus 93 --~~~~wd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~-~-~~~~~~h~~~v~~ 161 (304)
++++|++.+... ...+...........+.++|||++++....+ ..|.+||+.++. . ...+..+...+..
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD 321 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence 367899876542 2223222111114578899999998887654 389999986641 2 4455555555555
Q ss_pred EEEcCCCcEEEEeecCC--ceEEEEeeecCC--ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC-Ccee
Q psy4754 162 LQVSPDGTAFSSGSWDT--TLRCRLFDLRAD--KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL-KCCR 236 (304)
Q Consensus 162 v~~sp~~~~las~s~d~--~i~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~-~~~~ 236 (304)
. ++|+++.|+..+.++ ..++++||+.+. +....+..... .+..++++ ++.++++...|+..+||... ++..
T Consensus 322 ~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~--~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~ 397 (741)
T 1yr2_A 322 F-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD--NLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKP 397 (741)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS--EEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCE
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC--eEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCc
Confidence 4 348888888776543 334578888764 22222322221 23456666 66778888888887777543 3455
Q ss_pred eEEeec-cccceEEEEEccCCCEEE----EeecCCeeeecccccc
Q psy4754 237 VNHLMG-HENRVSCLQVSPDGTAFS----SGSWDTTLRDEESKNR 276 (304)
Q Consensus 237 ~~~~~~-h~~~i~~l~~sp~g~~la----sgs~D~~i~~~~~~~~ 276 (304)
+..+.. +.+.|..++++|++..|+ +.....+|.+|+...+
T Consensus 398 ~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 398 AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 566654 367889999999988666 3334578888887554
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.63 E-value=3.3e-12 Score=107.99 Aligned_cols=257 Identities=8% Similarity=0.014 Sum_probs=167.9
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee-eecCCcCcEEEEEECCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~d~ 80 (304)
+++.|.+||.. ++... +........+.++++.++|.++++...++.|..||.. ++... .+......+.++++.+++
T Consensus 39 ~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g 115 (300)
T 2qc5_A 39 KANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNG 115 (300)
T ss_dssp TTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTT
T ss_pred CCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCC
Confidence 35678999988 54432 2222223458899999999988887778999999987 54322 222234678899999999
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccce-eccCcccce
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRV 159 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~h~~~v 159 (304)
+++++...++.+ ..+|.. ++.. .+........+..+.+.++++..++...++.|..+|. +++... ....+...+
T Consensus 116 ~l~v~~~~~~~i--~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 190 (300)
T 2qc5_A 116 DIWFTQLNGDRI--GKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAP 190 (300)
T ss_dssp CEEEEETTTTEE--EEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred CEEEEccCCCeE--EEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCc
Confidence 988877656664 567765 3332 2222111123567889999986666666789999997 333221 122344568
Q ss_pred eEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE-
Q psy4754 160 SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN- 238 (304)
Q Consensus 160 ~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~- 238 (304)
.+++++++++.+++....+.+ ..+|. +++... +........+.++++.++|+++++...++.|..||.. +....
T Consensus 191 ~~i~~d~~g~l~v~~~~~~~i--~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~ 265 (300)
T 2qc5_A 191 VGITSGNDGALWFVEIMGNKI--GRITT-TGEISE-YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEY 265 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEE--EEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred ceEEECCCCCEEEEccCCCEE--EEEcC-CCcEEE-EECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEE
Confidence 899999999877766555554 57777 333322 2111112346789999999988777667899999974 43221
Q ss_pred EeeccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 239 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 239 ~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
.+......+.+++++++|..+++.. . .|..+++
T Consensus 266 ~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 266 QLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 2233456789999999999877765 4 5554443
No 196
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.63 E-value=6.8e-13 Score=118.29 Aligned_cols=239 Identities=10% Similarity=0.051 Sum_probs=162.2
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
....++|+++|.++++...++.|++||..++........... .. ++|+++++.|+.+..++..+++.++.........
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 367899999999888888889999999987765544433222 23 8999999999888876643357777765443322
Q ss_pred E-ec-cceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee----ccCcccce--eEEEEcCC-CcEEEEeecCC
Q psy4754 108 Y-KK-DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH----LMGHENRV--SCLQVSPD-GTAFSSGSWDT 178 (304)
Q Consensus 108 ~-~~-~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~----~~~h~~~v--~~v~~sp~-~~~las~s~d~ 178 (304)
. .. ......+..++++|++..|+.+..++.|..||..+...... ..++.... ..++|+|+ +.++++-..++
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 2 00 00112356789999666677777789999999875432111 12222222 39999995 66666666666
Q ss_pred ceEEEEeeecCCceEEEeecCc-------------eeeeeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCceeeEEeecc-
Q psy4754 179 TLRCRLFDLRADKEVACYKKDS-------------ILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCRVNHLMGH- 243 (304)
Q Consensus 179 ~i~i~~~d~~~~~~~~~~~~~~-------------~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd~~~~~~~~~~~~h- 243 (304)
.| +.|+.... +..+.... ....+..++++|+|+++++-. .++.|+.|+..++. +.++.++
T Consensus 290 ~I--~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~ 364 (409)
T 3hrp_A 290 SV--YKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQV 364 (409)
T ss_dssp EE--EEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECT
T ss_pred EE--EEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCC
Confidence 64 56776543 22221110 012367899999999888887 88999999977765 4555555
Q ss_pred --------------ccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 244 --------------ENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 244 --------------~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
-.....|+++|+|.++++-+.+..||-+.+
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 246899999999999999988889886643
No 197
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.63 E-value=6e-12 Score=106.36 Aligned_cols=240 Identities=12% Similarity=0.092 Sum_probs=164.5
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee-eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 26 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 26 ~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
.....++++.++|.++++...++.|.+||.. ++... .+..+...+.++++.++++++++...++.+ ..+|.. ++.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v--~~~d~~-g~~ 94 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKI--GKLSKK-GGF 94 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE--EEECTT-SCE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeE--EEECCC-CCe
Confidence 3457899999999988888788999999987 54332 223344678999999999988876656664 567766 333
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccc-eeccCcccceeEEEEcCCCcEEEEeecCCceEEE
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV-NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 183 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~ 183 (304)
..+........+..+++.+++..+++...++.|..+|.. ++.. ..+......+.++++.|+++.+++...++.+ .
T Consensus 95 -~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i--~ 170 (300)
T 2qc5_A 95 -TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI--G 170 (300)
T ss_dssp -EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE--E
T ss_pred -EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE--E
Confidence 222221111235678889999877777668899999976 3322 1223334568899999999977766556654 5
Q ss_pred EeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE-EeeccccceEEEEEccCCCEEEEe
Q psy4754 184 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 184 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~-~~~~h~~~i~~l~~sp~g~~lasg 262 (304)
.+|. +++... +........+..+++.++|.++++....+.|.+|+. ++.... .+..+...+.+++++++|..+++.
T Consensus 171 ~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 171 RITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp EECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred EECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 7776 333322 322111234678999999998888777778999998 443332 233355678999999999988887
Q ss_pred ecCCeeeecccccc
Q psy4754 263 SWDTTLRDEESKNR 276 (304)
Q Consensus 263 s~D~~i~~~~~~~~ 276 (304)
..++.|..++....
T Consensus 248 ~~~~~i~~~~~~g~ 261 (300)
T 2qc5_A 248 WGANQIGRITNDNT 261 (300)
T ss_dssp TTTTEEEEECTTSC
T ss_pred cCCCeEEEECCCCc
Confidence 77789998887433
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.60 E-value=6.8e-12 Score=110.41 Aligned_cols=256 Identities=9% Similarity=-0.010 Sum_probs=165.2
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee----------CCCcEEEEeCCCceeeeeecCC-------
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY----------NDYTINVWDSLKCCRVNHLMGH------- 67 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~h------- 67 (304)
+|.+||..+++.+..++.. ..- .++|+|||++++.+. .++.|.+||..+++.+..+..-
T Consensus 48 ~v~v~D~~t~~~~~~i~~g---~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGG---FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEEECCCCeEEEEecCC---CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 8899999999877655432 122 799999999888775 3678999999888776654321
Q ss_pred cCcEEEEEECCCCCeEEEEeC--CCceEEEEeeeCCCeeEeE-EeccceeeceeeeEEcCCC-CEEEEEeCCCeEEEecC
Q psy4754 68 ENRVSCLQVSPDGTAFSSGSW--DTTLRCRLFDLRADKEVAC-YKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDS 143 (304)
Q Consensus 68 ~~~V~~l~~s~d~~~l~sgs~--D~~i~~~~wd~~~~~~~~~-~~~~~~~~~~~~~~~s~~~-~~l~sg~~dg~i~iwd~ 143 (304)
...-..++|+|||++|+.+.. +.+ +.++| .+.+.+.. +... .++.+.+++ ..+++.+.||.+.++|.
T Consensus 124 g~~p~~~~~spDG~~l~v~n~~~~~~--v~viD-~t~~~~~~~i~~~------~~~~~~~~~~~~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 124 GPYSWMNANTPNNADLLFFQFAAGPA--VGLVV-QGGSSDDQLLSSP------TCYHIHPGAPSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred CCCccceEECCCCCEEEEEecCCCCe--EEEEE-CCCCEEeEEcCCC------ceEEEEeCCCceEEEEcCCCCEEEEEC
Confidence 123457899999999998774 355 46789 87776654 3321 123444554 44566678999999998
Q ss_pred Cccccceecc-----Ccccce-eEEEEcCCCcEEEEeecCCceEEEEeeecCCc--eEEEeecCc--------eeeeeeE
Q psy4754 144 LKCCRVNHLM-----GHENRV-SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK--EVACYKKDS--------ILFGATS 207 (304)
Q Consensus 144 ~~~~~~~~~~-----~h~~~v-~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~--~~~~~~~~~--------~~~~~~~ 207 (304)
+++...... ....++ ....+.+++..++..+.++.+ .+.|+.... .+..+.... ...+...
T Consensus 195 -~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v--~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~ 271 (373)
T 2mad_H 195 -AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKI--LQADISAAGATNKAPIDALSGGRKADTWRPGGWQQ 271 (373)
T ss_pred -CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceE--EEEeccCCcceEeeeeeecCCcccccceecCceEe
Confidence 654432111 111121 223456665444433455554 567775442 122221100 0111234
Q ss_pred EEEcCCCCEEEEEeC----------CCcEEEEeCCCceeeEEeeccccceEEEEEccCCC-EEEEee-cCCeeeeccccc
Q psy4754 208 VDFSVSGRLLFAGYN----------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGS-WDTTLRDEESKN 275 (304)
Q Consensus 208 ~~~s~~g~~l~sg~~----------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~lasgs-~D~~i~~~~~~~ 275 (304)
+.++|+++.+..+.. .+.|.++|..+.+.+.++.. .....+++|+|||+ .+.++. .+++|.++|...
T Consensus 272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 778999887777543 35799999999998888854 33579999999999 777776 489999999765
Q ss_pred cc
Q psy4754 276 RY 277 (304)
Q Consensus 276 ~~ 277 (304)
..
T Consensus 351 ~~ 352 (373)
T 2mad_H 351 GD 352 (373)
T ss_pred CC
Confidence 43
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.58 E-value=7.4e-13 Score=110.61 Aligned_cols=222 Identities=9% Similarity=0.031 Sum_probs=146.3
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec-CCcCcEEEEEECCCC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-GHENRVSCLQVSPDG 80 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~d~ 80 (304)
+++.|.+||..++..... . ......+.++++.++|.++++.. ++.|.+||....... .+. .....+..+++.++|
T Consensus 44 ~~~~i~~~~~~~~~~~~~-~-~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g 119 (270)
T 1rwi_B 44 MYGRVVKLATGSTGTTVL-P-FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQG 119 (270)
T ss_dssp SSCEEEEECC-----EEC-C-CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTC
T ss_pred CCCcEEEecCCCcccceE-e-eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCC
Confidence 356788888876543221 1 11123478899999999777766 889999998765432 222 233678899999999
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCccccee
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 160 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 160 (304)
+++++...++.| ..|+........ ........+..++++++++.+++...++.|.+||............+...+.
T Consensus 120 ~l~v~~~~~~~i--~~~~~~~~~~~~--~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~ 195 (270)
T 1rwi_B 120 AVYVADRGNNRV--VKLAAGSKTQTV--LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPW 195 (270)
T ss_dssp CEEEEEGGGTEE--EEECTTCCSCEE--CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEE
T ss_pred CEEEEECCCCEE--EEEECCCceeEe--eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCce
Confidence 988877667765 556654433221 1111112356788999998777666688999999776543332233446788
Q ss_pred EEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q psy4754 161 CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 235 (304)
Q Consensus 161 ~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~ 235 (304)
+++++|+|..+++...++.+ ..|+........ ..... ...+.+++++|+|+++++...++.|++++....+
T Consensus 196 ~i~~d~~g~l~v~~~~~~~v--~~~~~~~~~~~~-~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 196 GIAVDEAGTVYVTEHNTNQV--VKLLAGSTTSTV-LPFTG-LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEECTTCCEEEEETTTSCE--EEECTTCSCCEE-CCCCS-CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred EEEECCCCCEEEEECCCCcE--EEEcCCCCccee-eccCC-CCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 99999999887777667775 578876543322 21111 1346889999999999998889999999876544
No 200
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.58 E-value=6.7e-12 Score=106.87 Aligned_cols=225 Identities=13% Similarity=0.092 Sum_probs=148.6
Q ss_pred eeEEEEcCC-CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 29 ATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 29 i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
.-+..|+++ +.++++...++.|..||..+++.. .+ .....+.++++.++|+++++. +.. +..||..+++....
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~~--~~~--l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVATI--GTK--FCALNWKEQSAVVL 88 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEEE--TTE--EEEEETTTTEEEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEEE--CCe--EEEEECCCCcEEEE
Confidence 357889985 557778888999999999876542 22 245679999999999966553 344 46788876654332
Q ss_pred Eecc--ceeeceeeeEEcCCCCEEEEEeC-----------CCeEEEecCCccccceeccCcccceeEEEEcCCCcEEE-E
Q psy4754 108 YKKD--SILFGATSVDFSVSGRLLFAGYN-----------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFS-S 173 (304)
Q Consensus 108 ~~~~--~~~~~~~~~~~s~~~~~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s 173 (304)
.... .....+..+.++++|++.++... .+.|..+|.. + .+..+..+......++|+||++.++ +
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g-~~~~~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-H-HVKKYFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-S-CEEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-C-CEEEEeeccccccceEEcCCCCEEEEe
Confidence 2211 11123567889999996665422 2345555543 2 2222333445578899999998665 4
Q ss_pred eecCCceEEEEeee--cCCceE--EEee-cCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceE
Q psy4754 174 GSWDTTLRCRLFDL--RADKEV--ACYK-KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS 248 (304)
Q Consensus 174 ~s~d~~i~i~~~d~--~~~~~~--~~~~-~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~ 248 (304)
.+.++.| +.|++ .++... ..+. .......+..+++.++|++.++...++.|..||..+++.+..+..+...++
T Consensus 167 ~~~~~~i--~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t 244 (297)
T 3g4e_A 167 DSLSYSV--DAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT 244 (297)
T ss_dssp EGGGTEE--EEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred cCCCCcE--EEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce
Confidence 4555664 57876 333321 1111 111112457889999999998888888999999988888888888878899
Q ss_pred EEEEc-cCCCEEEEee
Q psy4754 249 CLQVS-PDGTAFSSGS 263 (304)
Q Consensus 249 ~l~~s-p~g~~lasgs 263 (304)
+++|. |+++.|...+
T Consensus 245 ~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 245 SCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEESGGGCEEEEEE
T ss_pred EEEEeCCCCCEEEEEc
Confidence 99998 8877554433
No 201
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.58 E-value=7.8e-13 Score=112.33 Aligned_cols=206 Identities=12% Similarity=0.054 Sum_probs=138.1
Q ss_pred eeeeeecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCe
Q psy4754 59 CRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 137 (304)
Q Consensus 59 ~~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~ 137 (304)
..+..+..+.....+++|+|+++ +++++..++.| ..||.... ...+.... ..+..++++++++++++...++.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i--~~~~~~~~--~~~~~~~~--~~~~~l~~~~dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRT--WAWSDDGQ--LSPEMHPS--HHQNGHCLNKQGHLIACSHGLRR 91 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEE--EEEETTSC--EEEEESSC--SSEEEEEECTTCCEEEEETTTTE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEE--EEEECCCC--eEEEECCC--CCcceeeECCCCcEEEEecCCCe
Confidence 34455555667788999999998 77788778774 68998765 33443322 23568899999998777766789
Q ss_pred EEEecCCccccceecc---Cc-ccceeEEEEcCCCcEEEE----eecC-----------CceEEEEeeecCCceEEEeec
Q psy4754 138 INVWDSLKCCRVNHLM---GH-ENRVSCLQVSPDGTAFSS----GSWD-----------TTLRCRLFDLRADKEVACYKK 198 (304)
Q Consensus 138 i~iwd~~~~~~~~~~~---~h-~~~v~~v~~sp~~~~las----~s~d-----------~~i~i~~~d~~~~~~~~~~~~ 198 (304)
|.+||..+++...... +. ...+..++++|+|+++++ ++.+ ....++.++.. ++ +..+..
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~ 169 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIR 169 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEEC
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeec
Confidence 9999986654322111 11 234678999999998887 3311 11123445544 33 222222
Q ss_pred CceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC-Ccee---eEEeeccccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 199 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL-KCCR---VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 199 ~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~-~~~~---~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
. ...++.++|+|+|+.+++...++.|.+|+.. ++.. ...+..+...+.+++++++|+++++. ++.|..|+.+
T Consensus 170 ~--~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 170 D--RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp C--CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred C--CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 2 1245789999999999777778899999976 3332 22333355667889999999988777 8899999875
Q ss_pred cc
Q psy4754 275 NR 276 (304)
Q Consensus 275 ~~ 276 (304)
..
T Consensus 246 g~ 247 (296)
T 3e5z_A 246 GD 247 (296)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 202
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.58 E-value=3.3e-12 Score=118.22 Aligned_cols=228 Identities=16% Similarity=0.072 Sum_probs=159.6
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC--CCeeEeEEeccce
Q psy4754 36 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR--ADKEVACYKKDSI 113 (304)
Q Consensus 36 ~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~--~~~~~~~~~~~~~ 113 (304)
+.+.++++...+++|.++|..+++.+..+... ..+..+.|+|||+++++++.|+.+ .+||+. +.+.+..+....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V--~viD~~~~t~~~v~~i~~G~- 240 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKV--NMIDLWMKEPTTVAEIKIGS- 240 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEE--EEEETTSSSCCEEEEEECCS-
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeE--EEEECCCCCCcEeEEEecCC-
Confidence 44567788889999999999999888877643 345689999999999999988874 789985 555555544322
Q ss_pred eeceeeeEEc----CCCCEEEEEeC-CCeEEEecCCccccceeccC----------ccc-ceeEEEEcCCCcEEEEe-ec
Q psy4754 114 LFGATSVDFS----VSGRLLFAGYN-DYTINVWDSLKCCRVNHLMG----------HEN-RVSCLQVSPDGTAFSSG-SW 176 (304)
Q Consensus 114 ~~~~~~~~~s----~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~----------h~~-~v~~v~~sp~~~~las~-s~ 176 (304)
....++|+ |+++++++++. ++.|.++|..+.+.+.++.- |.. .+..+.+++++..++.. ..
T Consensus 241 --~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 241 --EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp --EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred --CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 24578899 69999888765 59999999888776655431 222 57888899987655544 34
Q ss_pred CCceEEEEeeecCCceEE--EeecCceeeeeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCceeeEEeec-----cccceE
Q psy4754 177 DTTLRCRLFDLRADKEVA--CYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCRVNHLMG-----HENRVS 248 (304)
Q Consensus 177 d~~i~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd~~~~~~~~~~~~-----h~~~i~ 248 (304)
++. ++++|....+.+. .+.... ....+.|+|+|++++++. .+++|.++|..+++.+..+.- |.++-.
T Consensus 319 ~g~--v~~vd~~~~~~~~v~~i~~~~---~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~ 393 (567)
T 1qks_A 319 TGK--ILLVDYTDLNNLKTTEISAER---FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA 393 (567)
T ss_dssp TTE--EEEEETTCSSEEEEEEEECCS---SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE
T ss_pred CCe--EEEEecCCCccceeeeeeccc---cccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccce
Confidence 455 4678876654322 222221 235678999999987755 568899999999887766543 433222
Q ss_pred EEEEccC-CCEEEEee-cCCeeeeccccc
Q psy4754 249 CLQVSPD-GTAFSSGS-WDTTLRDEESKN 275 (304)
Q Consensus 249 ~l~~sp~-g~~lasgs-~D~~i~~~~~~~ 275 (304)
.+ ++|+ +..++++. .+++|.+++.++
T Consensus 394 ~~-~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 394 NF-VHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred ee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 22 5887 45555654 368999998765
No 203
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=4.9e-13 Score=127.16 Aligned_cols=231 Identities=10% Similarity=-0.046 Sum_probs=148.0
Q ss_pred cCCCCEEEEeeCCC---cEEEEeC--CCceeeeee------cCCcCcEEEEEECCCCCeEE-----EEeCCCceEEEEee
Q psy4754 35 SVSGRLLFAGYNDY---TINVWDS--LKCCRVNHL------MGHENRVSCLQVSPDGTAFS-----SGSWDTTLRCRLFD 98 (304)
Q Consensus 35 ~~~g~~l~tg~~dg---~v~iwd~--~~~~~~~~~------~~h~~~V~~l~~s~d~~~l~-----sgs~D~~i~~~~wd 98 (304)
+|+|++++-...++ .-.||-. ..++...-+ .+|...+..++|||||++|+ +|+.+.+ +++||
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~--i~v~d 153 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAV--LHVID 153 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCE--EEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEE--EEEEE
Confidence 37888776555543 3455553 333221111 24656789999999999888 3444455 58999
Q ss_pred eCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCe-------------EEEecCCccc----cceeccCcccceeE
Q psy4754 99 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT-------------INVWDSLKCC----RVNHLMGHENRVSC 161 (304)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~-------------i~iwd~~~~~----~~~~~~~h~~~v~~ 161 (304)
+.+++.+....... .....++|+||++.|+.++.+.. |++|++.+.. .+.+...|...+..
T Consensus 154 l~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~ 231 (695)
T 2bkl_A 154 VDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ 231 (695)
T ss_dssp TTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred CCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence 98876541001110 01157899999999999988776 9999988765 23333456667889
Q ss_pred EEEcCCCcEEEEeecCC--ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe---CCCcEEEEeCCCcee
Q psy4754 162 LQVSPDGTAFSSGSWDT--TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY---NDYTINVWDSLKCCR 236 (304)
Q Consensus 162 v~~sp~~~~las~s~d~--~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~---~d~~i~iwd~~~~~~ 236 (304)
+.|+|||+.++..+.++ ...+++++..+++......... ......+ ++|.+++... .++.|.+||+.++..
T Consensus 232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~---~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~ 307 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG---AKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPAR 307 (695)
T ss_dssp EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS---CCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSG
T ss_pred EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC---ceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCc
Confidence 99999999888777655 4445677665444332222221 1233445 5666544443 257899999876542
Q ss_pred --eEEeecc--ccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 237 --VNHLMGH--ENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 237 --~~~~~~h--~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
...+..| ...+..++|+ ++..+++...|+..++|..+
T Consensus 308 ~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 308 ASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp GGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred cCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 2334333 4568889998 77889999999999988654
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.53 E-value=7.6e-12 Score=109.55 Aligned_cols=279 Identities=10% Similarity=0.052 Sum_probs=177.4
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee----------CCCcEEEEeCCCceeeeeecCC-----
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY----------NDYTINVWDSLKCCRVNHLMGH----- 67 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~h----- 67 (304)
+++|-+.|..+++.+..++.-.. -. ++++|||++++.+. .++.|.+||..+++.+..+...
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~---P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~ 133 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFL---PN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 133 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSS---CE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CCEEEEEECCCCeEEEEEECCCC---Cc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccc
Confidence 57899999999998877664322 23 99999999776654 3678999999999887766421
Q ss_pred --cCcEEEEEECCCCCeEEEEeC--CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecC
Q psy4754 68 --ENRVSCLQVSPDGTAFSSGSW--DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 143 (304)
Q Consensus 68 --~~~V~~l~~s~d~~~l~sgs~--D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~ 143 (304)
...-..++|+|||++|+.+.. +++ +.++|+.+.+.+..+..... ...+....+.+++.+.||.+.+.++
T Consensus 134 ~~g~~P~~~a~spDGk~lyVan~~~~~~--VsVID~~t~~vv~tI~v~g~-----~~~~P~g~~~~~~~~~DG~~~~v~~ 206 (386)
T 3sjl_D 134 LVGTYPWMTSLTPDGKTLLFYQFSPAPA--VGVVDLEGKAFKRMLDVPDC-----YHIFPTAPDTFFMHCRDGSLAKVAF 206 (386)
T ss_dssp CBSCCGGGEEECTTSSEEEEEECSSSCE--EEEEETTTTEEEEEEECCSE-----EEEEEEETTEEEEEETTSCEEEEEC
T ss_pred ccCCCCceEEEcCCCCEEEEEEcCCCCe--EEEEECCCCcEEEEEECCCc-----ceeecCCCceeEEECCCCCEEEEEC
Confidence 113346899999998887764 566 47899999888876643221 1223334456667777777777776
Q ss_pred Cc-cccceeccCc----cccee-EEEE-cCCCcEEEEeecCCceEEEEeeecCCce--EEEee--------cCceeeeee
Q psy4754 144 LK-CCRVNHLMGH----ENRVS-CLQV-SPDGTAFSSGSWDTTLRCRLFDLRADKE--VACYK--------KDSILFGAT 206 (304)
Q Consensus 144 ~~-~~~~~~~~~h----~~~v~-~v~~-sp~~~~las~s~d~~i~i~~~d~~~~~~--~~~~~--------~~~~~~~~~ 206 (304)
.+ +....+...+ ..++. ...| .++|+++. .+.++.+ .+.|..+... ...+. ......+..
T Consensus 207 ~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V--~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q 283 (386)
T 3sjl_D 207 GTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKI--HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ 283 (386)
T ss_dssp CSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEE--EEEECTTSSCEECCCEESSCHHHHHTTEEECSSS
T ss_pred CCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEE--EEEECCCCcceeecceeccccccccccccCCCcc
Confidence 54 2221111111 11221 2355 47886544 3446764 5788865542 22221 000111223
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEeCCCceeeEEeeccccceEEEEEccCCC-EEEE-eecCCeeeecccc
Q psy4754 207 SVDFSVSGRLLFAGYN----------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSS-GSWDTTLRDEESK 274 (304)
Q Consensus 207 ~~~~s~~g~~l~sg~~----------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~las-gs~D~~i~~~~~~ 274 (304)
.++++|+++.+..... .+.|.+.|..+.+.+.++.-- .++++|+|+||++ +|.+ ...+++|.++|..
T Consensus 284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 4677899888777542 257999999999988887542 3788999999996 5555 4558999999875
Q ss_pred ccchhheeeccccCCceeEEEEEecC
Q psy4754 275 NRYMQYLLRSRITKPTQGLTVYFQDR 300 (304)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (304)
... ...++..+..+..+.+++|
T Consensus 363 t~k----~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 363 SGE----ELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp TCC----EEEEECCCCSSCCEEEECC
T ss_pred CCc----EEEEecCCCCCceeEECCc
Confidence 432 2344444444555555554
No 205
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.53 E-value=3.8e-12 Score=110.73 Aligned_cols=239 Identities=8% Similarity=0.007 Sum_probs=153.2
Q ss_pred ceeEEEEcCCCCEEEEee--CCCcEEEEeCCCceee------eeecCCcCcEEEEEECCCCCeEEEEeC-----CCceEE
Q psy4754 28 GATSVDFSVSGRLLFAGY--NDYTINVWDSLKCCRV------NHLMGHENRVSCLQVSPDGTAFSSGSW-----DTTLRC 94 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~--~dg~v~iwd~~~~~~~------~~~~~h~~~V~~l~~s~d~~~l~sgs~-----D~~i~~ 94 (304)
....++++++|+++++.. .++.++||.+.+++.. .....|-..+..+++.++++++++... +.. +
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~--i 95 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK--L 95 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE--E
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe--E
Confidence 468899999999998863 2443556655445432 111235578999999999887766433 344 4
Q ss_pred EEeeeCCCeeEeEEeccce----eeceeeeEEcCCCCEEEEEe----CCCeEEEecCCccccceeccCcc----------
Q psy4754 95 RLFDLRADKEVACYKKDSI----LFGATSVDFSVSGRLLFAGY----NDYTINVWDSLKCCRVNHLMGHE---------- 156 (304)
Q Consensus 95 ~~wd~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~sg~----~dg~i~iwd~~~~~~~~~~~~h~---------- 156 (304)
..||+.+++.+..+..... ......+++++++..++.+. .++.|.+||..+++....+.+|.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 7899988876665543211 01236788988665665543 57899999987654433332211
Q ss_pred -------------------cceeEEEEcCCCcEEEEeecCCceEEEEeeecC---Cc--------eEEEeecCceeeeee
Q psy4754 157 -------------------NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRA---DK--------EVACYKKDSILFGAT 206 (304)
Q Consensus 157 -------------------~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~---~~--------~~~~~~~~~~~~~~~ 206 (304)
..+..|+++||++.++.+..++. +++.++... .. .+... .+ ...+.
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~--~g~pd 251 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERY-SE--KPICD 251 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEE-EE--CCSCS
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEec-cc--CCCCc
Confidence 23688999999998888777664 123333221 00 00110 00 01246
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec-cccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 207 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 207 ~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~-h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
.++++++|.++++...++.|.+||..+++....... +...+.+++|.++|.++++.+....+..+.
T Consensus 252 gia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 252 GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred eEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 789999999999998899999999845543222222 245789999999999999887766665554
No 206
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.49 E-value=1.3e-10 Score=100.36 Aligned_cols=221 Identities=13% Similarity=0.028 Sum_probs=145.6
Q ss_pred eeEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 29 ATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 29 i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
..+..|+|++ .++++...++.|..||..+++... +. ....+.++++.++|+++++. .++ +.+||..+++....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~g---l~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DDG---LFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TTE---EEEEETTTCCEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CCC---EEEEECCCCcEEEE
Confidence 3578899974 567788788999999998775432 22 34679999999999887765 333 46788876654322
Q ss_pred Eeccc--eeeceeeeEEcCCCCEEEEEeC------CCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEe-ecCC
Q psy4754 108 YKKDS--ILFGATSVDFSVSGRLLFAGYN------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG-SWDT 178 (304)
Q Consensus 108 ~~~~~--~~~~~~~~~~s~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~-s~d~ 178 (304)
..... ....+..+.++++++++++... .+.|..++ +++ +..+..+......++|+||++.++.+ +.++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 22110 1123567889999987665432 25566666 332 22233333456789999999876544 4455
Q ss_pred ceEEEEeeec--CC-c-----eEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEE
Q psy4754 179 TLRCRLFDLR--AD-K-----EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL 250 (304)
Q Consensus 179 ~i~i~~~d~~--~~-~-----~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l 250 (304)
. +++||+. ++ + .+..+... ...+..+++.++|.+.++...++.|..||. +++.+..+..+...+.++
T Consensus 202 ~--I~~~d~~~~~Gl~~~~~~~~~~~~~~--~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 202 R--LMRVPLDARTGLPTGKAEVFIDSTGI--KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp E--EEEEEBCTTTCCBSSCCEEEEECTTS--SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred E--EEEEEcccccCCcccCceEEEECCCC--CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 5 4678875 43 2 11112111 123467889999998888777789999998 566777777777789999
Q ss_pred EEc-cCCCEEEEee
Q psy4754 251 QVS-PDGTAFSSGS 263 (304)
Q Consensus 251 ~~s-p~g~~lasgs 263 (304)
+|+ |++..|..++
T Consensus 277 af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 277 AFIGPDASRLLVTS 290 (326)
T ss_dssp EEESTTSCEEEEEE
T ss_pred EEecCCCCEEEEEe
Confidence 998 8887665444
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.47 E-value=3e-11 Score=115.67 Aligned_cols=231 Identities=13% Similarity=0.018 Sum_probs=145.3
Q ss_pred cCCCCEEEEeeCCCc---EEEEeCC-----Cceeeeee-------cCCcCcEEEEEECCCCCeEEEEeCC-Cc--eEEEE
Q psy4754 35 SVSGRLLFAGYNDYT---INVWDSL-----KCCRVNHL-------MGHENRVSCLQVSPDGTAFSSGSWD-TT--LRCRL 96 (304)
Q Consensus 35 ~~~g~~l~tg~~dg~---v~iwd~~-----~~~~~~~~-------~~h~~~V~~l~~s~d~~~l~sgs~D-~~--i~~~~ 96 (304)
+|+|++++-...++. -.+|... .++ .+.+ .+|...+..++|||||++|+.++.+ +. ..+++
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTK-GRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCC-CEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCC-CEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 388887775554433 5566543 222 2221 2344468899999999998876643 33 34689
Q ss_pred eeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCe--------------EEEecCCcccc----ceeccCcccc
Q psy4754 97 FDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT--------------INVWDSLKCCR----VNHLMGHENR 158 (304)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~--------------i~iwd~~~~~~----~~~~~~h~~~ 158 (304)
||+.+++.+..... . .....+.|+|| +.|+.+..++. |++|++.+... +.....+...
T Consensus 194 ~dl~tg~~~~~~~~-~--~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~ 269 (741)
T 1yr2_A 194 VGVADGKPLADELK-W--VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR 269 (741)
T ss_dssp EETTTCCEEEEEEE-E--EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred EECCCCCCCCccCC-C--ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence 99988776542111 1 11246889999 88888776554 88999876542 2222334446
Q ss_pred eeEEEEcCCCcEEEEeecCC---ceEEEEeeecCC--ceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC----CcEEEE
Q psy4754 159 VSCLQVSPDGTAFSSGSWDT---TLRCRLFDLRAD--KEVACYKKDSILFGATSVDFSVSGRLLFAGYND----YTINVW 229 (304)
Q Consensus 159 v~~v~~sp~~~~las~s~d~---~i~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d----~~i~iw 229 (304)
+..+.|+|||+.++..+.++ .-.+++||+.++ +....+..... ..... ++|+|+.|+..+.+ +.|.+|
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~ 346 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK--AQWDF-VDGVGDQLWFVSGDGAPLKKIVRV 346 (741)
T ss_dssp EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS--SCEEE-EEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC--ceEEE-EeccCCEEEEEECCCCCCCEEEEE
Confidence 88999999999888777543 234678998776 30222222111 11222 35889888877653 459999
Q ss_pred eCCCc-eeeEE-eeccccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 230 DSLKC-CRVNH-LMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 230 d~~~~-~~~~~-~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
|+.++ ..... +..+...+..++++ ++..+++...|+..++|..+
T Consensus 347 d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 347 DLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp ECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred eCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 98774 12333 34455567778887 66788899999998888654
No 208
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.47 E-value=1e-11 Score=118.06 Aligned_cols=239 Identities=18% Similarity=0.129 Sum_probs=150.3
Q ss_pred ceeEEEEcCCCCEEE-----EeeCCCcEEEEeCCCceeeeeecCCcCcE--EEEEECCCCCeEEEEeCCCc---------
Q psy4754 28 GATSVDFSVSGRLLF-----AGYNDYTINVWDSLKCCRVNHLMGHENRV--SCLQVSPDGTAFSSGSWDTT--------- 91 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~-----tg~~dg~v~iwd~~~~~~~~~~~~h~~~V--~~l~~s~d~~~l~sgs~D~~--------- 91 (304)
.+..++|||||++|| .|+...+|++||+.+++.+.. +...+ ..++|+ |++.|+.++.|..
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET---PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE---EEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc---ccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 478899999999887 344446899999999876542 22233 578999 9999888887743
Q ss_pred --eEEEEeeeCCCee--EeEEeccc-eeeceeeeEEcCCCCEEEEEe----CCCeEEEecCCccc-cceeccCcccceeE
Q psy4754 92 --LRCRLFDLRADKE--VACYKKDS-ILFGATSVDFSVSGRLLFAGY----NDYTINVWDSLKCC-RVNHLMGHENRVSC 161 (304)
Q Consensus 92 --i~~~~wd~~~~~~--~~~~~~~~-~~~~~~~~~~s~~~~~l~sg~----~dg~i~iwd~~~~~-~~~~~~~h~~~v~~ 161 (304)
-++++|++.+... ...+.... .......+.++||+++++... ....|.++|+.+.. ....+..+......
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~ 285 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS 285 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence 3367899876542 22333222 111134678999999886543 23589999987653 34455556555555
Q ss_pred EEEcCCCcEEE-EeecCC-ceEEEEeeecCCce--EEEeecCceeeeeeEEEEcCCCCEEEEEeCCC---cEEEEeCCCc
Q psy4754 162 LQVSPDGTAFS-SGSWDT-TLRCRLFDLRADKE--VACYKKDSILFGATSVDFSVSGRLLFAGYNDY---TINVWDSLKC 234 (304)
Q Consensus 162 v~~sp~~~~la-s~s~d~-~i~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~---~i~iwd~~~~ 234 (304)
. +++++..|+ ....+. ..++..+|+.+... ...+..+.. .+. .|++++++|+....+. .|++|+...+
T Consensus 286 ~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 286 L-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ--QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS--SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC--CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 4 566665554 444442 24456788876543 122222221 122 7899999887765443 6888998754
Q ss_pred eeeEEee-ccccceEEEEEccCCCEEEEeecC----Ceeeecccccc
Q psy4754 235 CRVNHLM-GHENRVSCLQVSPDGTAFSSGSWD----TTLRDEESKNR 276 (304)
Q Consensus 235 ~~~~~~~-~h~~~i~~l~~sp~g~~lasgs~D----~~i~~~~~~~~ 276 (304)
....+. .+.+.+..+.++|++..|+....+ .+|..++...+
T Consensus 361 -~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 361 -RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp -EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred -eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 344443 244677888888988876655444 67777776443
No 209
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.46 E-value=4.7e-11 Score=101.92 Aligned_cols=227 Identities=11% Similarity=0.033 Sum_probs=148.4
Q ss_pred eeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 29 ATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 29 i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
.....|+|+|+ +++++..++.|..|+. +++ ...+..+...+..+++.++|+++++...++.| ..||.. ++. ..
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v--~~~~~~-g~~-~~ 120 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAI--TRSDAD-GQA-HL 120 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEE--EEECTT-SCE-EE
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEE--EEECCC-CCE-EE
Confidence 56789999998 6778888999999998 443 34445566778999999999976665445554 567765 332 22
Q ss_pred Eec--c-ceeeceeeeEEcCCCCEEEE----EeC-------------CCeEEEecCCccccceeccCcccceeEEEEcCC
Q psy4754 108 YKK--D-SILFGATSVDFSVSGRLLFA----GYN-------------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 167 (304)
Q Consensus 108 ~~~--~-~~~~~~~~~~~s~~~~~l~s----g~~-------------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~ 167 (304)
+.. . .....+..+.++++|...++ |.. .+.|..||..+++.. .+. .......++|+||
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~-~~~-~~~~p~gl~~spd 198 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ-RMA-DLDHPNGLAFSPD 198 (305)
T ss_dssp EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE-EEE-EESSEEEEEECTT
T ss_pred EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE-EEe-cCCCCcceEEcCC
Confidence 211 1 11123457889999997775 321 356888887554322 222 4456788999999
Q ss_pred CcEEEEeecC------CceEEEEeeecCCce--EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEE
Q psy4754 168 GTAFSSGSWD------TTLRCRLFDLRADKE--VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 239 (304)
Q Consensus 168 ~~~las~s~d------~~i~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~ 239 (304)
++.++.+... +. ++.|++..... ...+... ....+..+++.++|++.++. .+ .|.+|+. .++.+..
T Consensus 199 g~~lyv~~~~~~~~~~~~--i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~ 272 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVE--ITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DGQLLGH 272 (305)
T ss_dssp SSEEEEEECCC---CCCE--EEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEECC-SS-EEEEECT-TSCEEEE
T ss_pred CCEEEEEecCCcCCCCCE--EEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEec-CC-cEEEECC-CCCEEEE
Confidence 9977766554 44 46788765431 1111110 01123568899999966554 34 5999997 5666777
Q ss_pred eeccccceEEEEEccCCCEEEEeecCCeeee
Q psy4754 240 LMGHENRVSCLQVSPDGTAFSSGSWDTTLRD 270 (304)
Q Consensus 240 ~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~ 270 (304)
+..+. .+.+++|+|+++.|..++.++..++
T Consensus 273 ~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 273 IPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred EECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 76555 6899999999988887777655554
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.46 E-value=3.1e-11 Score=107.34 Aligned_cols=259 Identities=9% Similarity=0.018 Sum_probs=168.0
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee----------CCCcEEEEeCCCceeeeeecCC------
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY----------NDYTINVWDSLKCCRVNHLMGH------ 67 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~h------ 67 (304)
++|-++|+.+++.+..++.-.. - .++++|||+.++.+. .++.|.++|..+++.+..+.--
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~---P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFL---P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL 174 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSS---C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CeEEEEECCCCEEEEEEECCCC---C-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence 6899999999998877664432 2 799999999777665 4679999999999887765321
Q ss_pred -cCcEEEEEECCCCCeEEEEeC--CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCC-CCEEEEEeCCCeEEEecC
Q psy4754 68 -ENRVSCLQVSPDGTAFSSGSW--DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDS 143 (304)
Q Consensus 68 -~~~V~~l~~s~d~~~l~sgs~--D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~sg~~dg~i~iwd~ 143 (304)
...-..+.|+|||++|+.+.. +++ +.+.|..+.+.+..+..... ....|+ ...+++.+.||.+.+.+.
T Consensus 175 ~g~~P~~~~~spDGk~lyV~n~~~~~~--VsVID~~t~kvv~~I~v~g~------~~~~p~g~~~~v~~~~dG~~~~V~~ 246 (426)
T 3c75_H 175 VGTYQWMNALTPDNKNLLFYQFSPAPA--VGVVDLEGKTFDRMLDVPDC------YHIFPASPTVFYMNCRDGSLARVDF 246 (426)
T ss_dssp BSCCGGGSEECTTSSEEEEEECSSSCE--EEEEETTTTEEEEEEECCSE------EEEEEEETTEEEEEETTSSEEEEEC
T ss_pred cCCCcceEEEcCCCCEEEEEecCCCCe--EEEEECCCCeEEEEEEcCCc------eeeccCCCcEEEEEcCCCCEEEEEC
Confidence 122346799999999988775 355 47899998887766553211 112222 234455556666666665
Q ss_pred Cccccce----eccCcccce-eEEEEcCCCcEEEEeecCCceEEEEeeecCCceEE--EeecC--------ceeeeeeEE
Q psy4754 144 LKCCRVN----HLMGHENRV-SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA--CYKKD--------SILFGATSV 208 (304)
Q Consensus 144 ~~~~~~~----~~~~h~~~v-~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~--~~~~~--------~~~~~~~~~ 208 (304)
.+++... .+.-...++ ..+.+.+++..++..+..+.+ .+.|........ .+... ....+...+
T Consensus 247 ~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V--~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v 324 (426)
T 3c75_H 247 ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKI--FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQT 324 (426)
T ss_dssp CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEE--EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCE
T ss_pred CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcE--EEEeccCCceEEeeeeeeccccccccccccCCceee
Confidence 3322211 111111111 235678888877666677764 578876543211 11100 001112236
Q ss_pred EEcCCCCEEEEEeC----------CCcEEEEeCCCceeeEEeeccccceEEEEEccCCC-EEEEee-cCCeeeecccccc
Q psy4754 209 DFSVSGRLLFAGYN----------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGS-WDTTLRDEESKNR 276 (304)
Q Consensus 209 ~~s~~g~~l~sg~~----------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~lasgs-~D~~i~~~~~~~~ 276 (304)
+++|+++.+.+... .+.|.++|..+.+.+.++... ....+++|+|||+ ++.+.. .++.|.++|....
T Consensus 325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 89999887666532 357999999999999888643 2578999999999 777776 5899999997554
Q ss_pred c
Q psy4754 277 Y 277 (304)
Q Consensus 277 ~ 277 (304)
.
T Consensus 404 k 404 (426)
T 3c75_H 404 E 404 (426)
T ss_dssp C
T ss_pred C
Confidence 3
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.46 E-value=2.7e-12 Score=112.70 Aligned_cols=170 Identities=14% Similarity=0.044 Sum_probs=128.9
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe-----------eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeE
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK-----------EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 138 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~-----------~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i 138 (304)
++..|++++...++++|+.|+. .+|++...+ ....... ..+..++| ++.+|+++ .++.|
T Consensus 39 ~~nlLais~~~gll~a~~~~~l---~v~~~~~l~~~~~~~~~~~~~~~~~~l----p~V~~l~f--d~~~L~v~-~~~~l 108 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKA---VVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCF--HGDQVLVS-TRNAL 108 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEE---EEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEE--ETTEEEEE-ESSEE
T ss_pred cccEEEEcCCCCEEEEeCCCEE---EEEEhhHhhhhhccccccccceEEeeC----CCeeEEEE--CCCEEEEE-cCCcE
Confidence 6889999999999999999865 468764322 1111111 12678889 88999998 88999
Q ss_pred EEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEE
Q psy4754 139 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF 218 (304)
Q Consensus 139 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 218 (304)
++||+.+.........|..++.++.+.+. .+++++.|+.+ .+||+.+.+... ....+.+++|||+| ++
T Consensus 109 ~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L--~v~dl~~~~~~~------~~~~Vs~v~WSpkG--~~ 176 (388)
T 1xip_A 109 YSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDL--SALDLRTKSTKQ------LAQNVTSFDVTNSQ--LA 176 (388)
T ss_dssp EEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEE--EEEETTTCCEEE------EEESEEEEEECSSE--EE
T ss_pred EEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCE--EEEEccCCcccc------ccCCceEEEEcCCc--eE
Confidence 99998765544455567777888877654 38889999996 689998766542 22468999999999 67
Q ss_pred EEeCCCcEEEEeCCCcee--eEEe------e---ccccceEEEEEccCCCEEEE
Q psy4754 219 AGYNDYTINVWDSLKCCR--VNHL------M---GHENRVSCLQVSPDGTAFSS 261 (304)
Q Consensus 219 sg~~d~~i~iwd~~~~~~--~~~~------~---~h~~~i~~l~~sp~g~~las 261 (304)
.|..||++++|+....+. .+++ . +|...|.+|.|.+++.++++
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 899999999998776654 4555 2 47889999999999998887
No 212
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.43 E-value=3.4e-11 Score=105.33 Aligned_cols=252 Identities=8% Similarity=-0.078 Sum_probs=157.5
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEee----------CCCcEEEEeCCCceeeeeecCCc------
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY----------NDYTINVWDSLKCCRVNHLMGHE------ 68 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~h~------ 68 (304)
+|-++|..+++.+..++.-.. . .+.|+|||+.++.+. .++.|.+||+.+++.+.++..+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~--P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL--S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT--C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred eEEEEECCCCeEEEEEeCCCC--C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence 888999999999877765432 2 699999999777765 47899999999999888875331
Q ss_pred -CcEEEEEECCCCCeEEEEeCC--CceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCC-EEEEEeCCCeEEEecCC
Q psy4754 69 -NRVSCLQVSPDGTAFSSGSWD--TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSL 144 (304)
Q Consensus 69 -~~V~~l~~s~d~~~l~sgs~D--~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~sg~~dg~i~iwd~~ 144 (304)
..-..++++|||++|+.+..+ ..+.+.++|..+ +..+.... +..+.|+++ .+++.+.|+.+.+.|..
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~------~~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS------CFHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS------CCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC------ceEEccCCCeEEEEEcCCCCEEEEECc
Confidence 224478999999999887653 444322288765 33332111 111223332 34445567777777766
Q ss_pred c-----cccce----eccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCc--eEEEeecC--------ceeeee
Q psy4754 145 K-----CCRVN----HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK--EVACYKKD--------SILFGA 205 (304)
Q Consensus 145 ~-----~~~~~----~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~--~~~~~~~~--------~~~~~~ 205 (304)
+ ++... .+.-...+. . ++++..++..+. +.+ .+.|..... .+..+... ....+.
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V--~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~ 266 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSI--LQGDIPAAGATMKAAIDGNESGRKADNFRSAGF 266 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCC--EEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred cccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEE--EEEECCCCcceEEEEEEeccccccccccccCcc
Confidence 5 22211 111112232 3 555555554455 665 467775432 22222110 001111
Q ss_pred eEEEEcCCCCEEEEEeC---------CCcEEEEeCCCceeeEEeeccccceEEEEEccCCC-EEEEee-cCCeeeecccc
Q psy4754 206 TSVDFSVSGRLLFAGYN---------DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGS-WDTTLRDEESK 274 (304)
Q Consensus 206 ~~~~~s~~g~~l~sg~~---------d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~-~lasgs-~D~~i~~~~~~ 274 (304)
..++++|+++.+..+.. +..+.++|..+.+.+.++.... ....++|+|||+ .+++.. .+++|.++|..
T Consensus 267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 22679999988776532 2356799999998888876543 688999999997 566666 59999999986
Q ss_pred ccc
Q psy4754 275 NRY 277 (304)
Q Consensus 275 ~~~ 277 (304)
...
T Consensus 346 t~k 348 (368)
T 1mda_H 346 SDQ 348 (368)
T ss_dssp SCE
T ss_pred CCc
Confidence 543
No 213
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.39 E-value=3.6e-10 Score=96.21 Aligned_cols=221 Identities=8% Similarity=0.023 Sum_probs=140.5
Q ss_pred CceeEEeeccccceEeeeec--cccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCceeeee-ec---C-CcCcEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKK--DSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNH-LM---G-HENRVSCL 74 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~--~~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~~~~~-~~---~-h~~~V~~l 74 (304)
++.|..||+.+++....... ......+.+++++++ |.++++.. ...|.+||.. ++.... .. + +...+.++
T Consensus 45 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i 122 (314)
T 1pjx_A 45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDC 122 (314)
T ss_dssp CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEE
T ss_pred CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCE
Confidence 56799999888765432110 012234889999999 77666554 4479999987 654322 11 1 12457899
Q ss_pred EECCCCCeEEEEeCCC-------------ceEEEEeeeCCCeeEeEEeccceeeceeeeEEc----CCCCEEEEE-eCCC
Q psy4754 75 QVSPDGTAFSSGSWDT-------------TLRCRLFDLRADKEVACYKKDSILFGATSVDFS----VSGRLLFAG-YNDY 136 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D~-------------~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~l~sg-~~dg 136 (304)
++.++|+++++...++ ...+..+|.. ++....... ......++++ ++++.++.+ ..++
T Consensus 123 ~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~---~~~~~~i~~~~~~d~dg~~l~v~~~~~~ 198 (314)
T 1pjx_A 123 AFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA---FQFPNGIAVRHMNDGRPYQLIVAETPTK 198 (314)
T ss_dssp EECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE---ESSEEEEEEEECTTSCEEEEEEEETTTT
T ss_pred EECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC---CCCcceEEEecccCCCCCEEEEEECCCC
Confidence 9999999888776541 1224556554 332221111 1124578889 998766555 4678
Q ss_pred eEEEecCC-ccc-----cceeccCcc-cceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEE
Q psy4754 137 TINVWDSL-KCC-----RVNHLMGHE-NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 209 (304)
Q Consensus 137 ~i~iwd~~-~~~-----~~~~~~~h~-~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 209 (304)
.|.+||.. ++. ....+.++. ..+..++++++|+++++...++.| ..||..+++.+..+.... ..+.+++
T Consensus 199 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i--~~~d~~~g~~~~~~~~~~--~~~~~i~ 274 (314)
T 1pjx_A 199 KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI--EVFGPDGGQPKMRIRCPF--EKPSNLH 274 (314)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE--EEECTTCBSCSEEEECSS--SCEEEEE
T ss_pred eEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE--EEEcCCCCcEeEEEeCCC--CCceeEE
Confidence 99999865 222 222334443 567889999999988887777765 578887555544443322 2468899
Q ss_pred EcCCCCEE-EEEeCCCcEEEEeCCC
Q psy4754 210 FSVSGRLL-FAGYNDYTINVWDSLK 233 (304)
Q Consensus 210 ~s~~g~~l-~sg~~d~~i~iwd~~~ 233 (304)
|+|+|+.| ++...++.|..|+...
T Consensus 275 ~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 275 FKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999955 4455567899998754
No 214
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.37 E-value=4.1e-10 Score=98.61 Aligned_cols=243 Identities=12% Similarity=0.007 Sum_probs=152.0
Q ss_pred CceeEEeeccccceEeeeeccc-----cccceeEEEEcCCCCEEEEeeC--CCcEEEEeCCCceeeeeecCCcCcEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDS-----ILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHENRVSCLQ 75 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~-----~~~~i~~~~~~~~g~~l~tg~~--dg~v~iwd~~~~~~~~~~~~h~~~V~~l~ 75 (304)
+++|.+||..+.+....+.... ....-..++|+|||++++.+.. ++.|.++|+.+++.+.++.... . ...
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~ 184 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHI 184 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEE
T ss_pred CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-cee
Confidence 4579999999998876665321 0112456999999998877753 6899999999999888774321 1 122
Q ss_pred ECCCCCeEEEEeCCCceEEEEeeeCC-CeeEeEEecc--ceeece-eeeEEc-CCCCEEEEEeCCCeEEEecCCccc--c
Q psy4754 76 VSPDGTAFSSGSWDTTLRCRLFDLRA-DKEVACYKKD--SILFGA-TSVDFS-VSGRLLFAGYNDYTINVWDSLKCC--R 148 (304)
Q Consensus 76 ~s~d~~~l~sgs~D~~i~~~~wd~~~-~~~~~~~~~~--~~~~~~-~~~~~s-~~~~~l~sg~~dg~i~iwd~~~~~--~ 148 (304)
+....+.+++.+.|+.+ -..++.. .+........ .....+ ....|. +++++++ .+.+|.|.+.|+.+.. .
T Consensus 185 ~P~g~~~~~~~~~DG~~--~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v 261 (386)
T 3sjl_D 185 FPTAPDTFFMHCRDGSL--AKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF 261 (386)
T ss_dssp EEEETTEEEEEETTSCE--EEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE
T ss_pred ecCCCceeEEECCCCCE--EEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee
Confidence 33334566677777774 4566654 3322111100 000001 113443 5665444 6668999999986543 1
Q ss_pred ceecc---------C-cccceeEEEEcCCCcEEEEeecC--------CceEEEEeeecCCceEEEeecCceeeeeeEEEE
Q psy4754 149 VNHLM---------G-HENRVSCLQVSPDGTAFSSGSWD--------TTLRCRLFDLRADKEVACYKKDSILFGATSVDF 210 (304)
Q Consensus 149 ~~~~~---------~-h~~~v~~v~~sp~~~~las~s~d--------~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 210 (304)
+..+. + .......++++|+++.+.....+ ..=.++++|+.+.+.+..+.... .+.++++
T Consensus 262 ~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~---~~~~lav 338 (386)
T 3sjl_D 262 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH---EIDSINV 338 (386)
T ss_dssp CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECEEEE
T ss_pred ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC---CcceEEE
Confidence 21111 1 12334457889988877665421 11235789999999888776543 4679999
Q ss_pred cCCCC-EEEE-EeCCCcEEEEeCCCceeeEEeeccccceEEEEEccC
Q psy4754 211 SVSGR-LLFA-GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 255 (304)
Q Consensus 211 s~~g~-~l~s-g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~ 255 (304)
+||++ +|++ ...+++|.++|..+++.++++..- +.-+.|.+++|
T Consensus 339 s~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 339 SQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp CSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 99997 5555 455899999999999988887642 22345666665
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.37 E-value=3.3e-11 Score=105.82 Aligned_cols=173 Identities=12% Similarity=0.001 Sum_probs=121.6
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce---------eee-eecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEe
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---------RVN-HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLF 97 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~---------~~~-~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~w 97 (304)
.++.+++++...++++|+.++ +++|++.... ... ....+.. |+.++| |+++|+.+ .++. +++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~--l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNA--LYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSE--EEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCc--EEEE
Confidence 489999999999999999985 6669965432 111 1223556 999999 89999998 6776 4799
Q ss_pred eeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecC
Q psy4754 98 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 177 (304)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d 177 (304)
|+.+........... ..+..+.+.+. .+++++.||.+.+||+.+..... +...|++++|+|+| ++.|..|
T Consensus 112 dv~sl~~~~~~~~~~--~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 112 DLEELSEFRTVTSFE--KPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp ESSSTTCEEEEEECS--SCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred EchhhhccCccceee--cceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 987654333222211 12345554443 38889999999999998655432 45689999999999 6778889
Q ss_pred CceEEEEeeecCCce--EEEeec----C---ceeeeeeEEEEcCCCCEEEE
Q psy4754 178 TTLRCRLFDLRADKE--VACYKK----D---SILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 178 ~~i~i~~~d~~~~~~--~~~~~~----~---~~~~~~~~~~~s~~g~~l~s 219 (304)
+++ ++|+....+. ..++.. + .....+.++.|.+++.++++
T Consensus 182 g~i--~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 182 RSF--QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp SCE--EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CcE--EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 996 5788776653 344411 0 11256899999999999887
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.35 E-value=1.4e-09 Score=92.37 Aligned_cols=206 Identities=15% Similarity=0.102 Sum_probs=133.4
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC----CcCcEEEEEEC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG----HENRVSCLQVS 77 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~----h~~~V~~l~~s 77 (304)
..++|..||+.+++.. .+.. ...+.+++++++|.++++. +..|.+||..+++....... ....+..+++.
T Consensus 33 ~~~~i~~~d~~~~~~~-~~~~---~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d 106 (297)
T 3g4e_A 33 PAKKVCRWDSFTKQVQ-RVTM---DAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVD 106 (297)
T ss_dssp TTTEEEEEETTTCCEE-EEEC---SSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEEC
T ss_pred CCCEEEEEECCCCcEE-EEeC---CCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEEC
Confidence 4678899999887653 2221 2348899999999966654 56899999987754322111 12457889999
Q ss_pred CCCCeEEEEeCC---------CceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-eCCCeEEEecC--Cc
Q psy4754 78 PDGTAFSSGSWD---------TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDS--LK 145 (304)
Q Consensus 78 ~d~~~l~sgs~D---------~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-~~dg~i~iwd~--~~ 145 (304)
|+|+++++...+ ... .+|.+........... .....+.++|+|+++.++.+ +.++.|.+||+ .+
T Consensus 107 ~dG~l~~~~~~~~~~~~~~~~~~~--~l~~~d~~g~~~~~~~--~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~ 182 (297)
T 3g4e_A 107 PAGRYFAGTMAEETAPAVLERHQG--ALYSLFPDHHVKKYFD--QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQT 182 (297)
T ss_dssp TTSCEEEEEEECCSBTTBCCTTCE--EEEEECTTSCEEEEEE--EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTT
T ss_pred CCCCEEEecCCcccccccccCCCc--EEEEEECCCCEEEEee--ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCC
Confidence 999977765332 222 3555543222222111 11234678999999877554 55789999985 33
Q ss_pred cc-----cceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEc-CCCCEEEE
Q psy4754 146 CC-----RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS-VSGRLLFA 219 (304)
Q Consensus 146 ~~-----~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~l~s 219 (304)
+. .+..+..+...+..++++++|++.++...++.| ..||..+++.+..+.... ..+++++|. |+++.|..
T Consensus 183 G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v--~~~d~~tG~~~~~i~~p~--~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 183 GQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRV--IRLDPVTGKRLQTVKLPV--DKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp CCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEE--EEECTTTCCEEEEEECSS--SBEEEEEEESGGGCEEEE
T ss_pred CcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEE--EEEcCCCceEEEEEECCC--CCceEEEEeCCCCCEEEE
Confidence 32 122333344568899999999888777666664 589988777776665432 246889998 88876655
Q ss_pred Ee
Q psy4754 220 GY 221 (304)
Q Consensus 220 g~ 221 (304)
.+
T Consensus 259 t~ 260 (297)
T 3g4e_A 259 TC 260 (297)
T ss_dssp EE
T ss_pred Ec
Confidence 44
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.33 E-value=1.1e-09 Score=97.59 Aligned_cols=218 Identities=9% Similarity=0.043 Sum_probs=139.0
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCC--cEEEEeCCCceeeeee----cCCcCcEEEEE
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY--TINVWDSLKCCRVNHL----MGHENRVSCLQ 75 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg--~v~iwd~~~~~~~~~~----~~h~~~V~~l~ 75 (304)
++++|+.||+.+++........ .... ++|++++..|+.+..++ .|.+|+...+.....+ ..+...+.+++
T Consensus 150 ~~~~I~~id~~~g~~~~~~~~~---~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~ia 225 (409)
T 3hrp_A 150 DDPRVRLISVDDNKVTTVHPGF---KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVA 225 (409)
T ss_dssp TTTEEEEEETTTTEEEEEEETC---CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCE
T ss_pred CCCcEEEEECCCCEEEEeeccC---CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEE
Confidence 4578999999988765443321 1234 99999999888887766 7888887765433333 22446678899
Q ss_pred ECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEe---ccceeece-e-eeEEcCCCCEEE-EEeCCCeEEEecCCccccc
Q psy4754 76 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK---KDSILFGA-T-SVDFSVSGRLLF-AGYNDYTINVWDSLKCCRV 149 (304)
Q Consensus 76 ~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~---~~~~~~~~-~-~~~~s~~~~~l~-sg~~dg~i~iwd~~~~~~~ 149 (304)
++|++..|+.+..++. ++.||....... .+. ........ . .++|+|++..++ +-...+.|+.|+.... +
T Consensus 226 v~p~~g~lyv~d~~~~--I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~ 300 (409)
T 3hrp_A 226 LDETEEWLYFVDSNKN--FGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--C 300 (409)
T ss_dssp ECTTSSEEEEECTTCE--EEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--E
T ss_pred EeCCCCeEEEEECCCc--EEEEECCCCCEE-EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--E
Confidence 9995444444555565 477888755432 220 11111011 2 789999644444 4556789999986532 2
Q ss_pred eeccCc---------------ccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecC-------------c
Q psy4754 150 NHLMGH---------------ENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKD-------------S 200 (304)
Q Consensus 150 ~~~~~h---------------~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~-------------~ 200 (304)
..+.++ -.....++++|+|+++++-+ .++.| +.|++.+++.. .+... .
T Consensus 301 ~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I--~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~ 377 (409)
T 3hrp_A 301 EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCL--RKLDILDGYVS-TVAGQVDVASQIDGTPLEA 377 (409)
T ss_dssp EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEE--EEEETTTTEEE-EEEECTTCBSCCCBSTTTC
T ss_pred EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEE--EEEECCCCEEE-EEeCCCCCCCcCCCChhce
Confidence 222222 23578999999999777766 66664 68886665532 22211 0
Q ss_pred eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 201 ILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 201 ~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
....+..++++|+|.++++-...+.|+.+++
T Consensus 378 ~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 378 TFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 1234688999999999888888888887653
No 218
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.32 E-value=3e-12 Score=112.55 Aligned_cols=206 Identities=15% Similarity=0.012 Sum_probs=115.5
Q ss_pred CCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeec
Q psy4754 37 SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG 116 (304)
Q Consensus 37 ~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~ 116 (304)
++..+++++.||.|+.||..+|+.+-.+.. +++.+..+..+++.+++++.|+.+ ..||..+++.+..++.+.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l--~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSL--YTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCE--EEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEE--EEEECCCCceeeeeeccCcccc
Confidence 577889999999999999999988766655 455555666778888888899985 6799987776655433211000
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEe
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 196 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~ 196 (304)
..+..+. ++..+++++.++.+..||..+++.+-++..+. ...++|++..+++++.|+.+ ..||.++++.+-.+
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v--~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTI--TMYDTKTRELRWNA 156 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEE--ECCCSSSSSCCCEE
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEE--EEEECCCCCEEEeE
Confidence 0111111 34567888889999999999887765554443 23456788889999988885 68999888754332
Q ss_pred ecCceeeeeeEEEEcCCC---CEEEEEeCCCcEEEEeCCCceeeEEeeccccceE-EEEEccCCCE
Q psy4754 197 KKDSILFGATSVDFSVSG---RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS-CLQVSPDGTA 258 (304)
Q Consensus 197 ~~~~~~~~~~~~~~s~~g---~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~-~l~~sp~g~~ 258 (304)
.... ....++.++. ..+++++.|+.+..||..+++.+-++.. ..++. ...++++|..
T Consensus 157 ~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 157 TYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLR 217 (369)
T ss_dssp EEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCE
T ss_pred eccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceE
Confidence 2111 1222334432 4566788899999999999988776653 34544 3456667754
No 219
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.31 E-value=9.4e-09 Score=90.29 Aligned_cols=225 Identities=8% Similarity=-0.084 Sum_probs=144.3
Q ss_pred CceeEEeeccccceEeeeecc--cc---ccceeEEEEcCCCCEEEEeeC--CCcEEEEeCCCceeeee-ecCCcCcEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKD--SI---LFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNH-LMGHENRVSCL 74 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~--~~---~~~i~~~~~~~~g~~l~tg~~--dg~v~iwd~~~~~~~~~-~~~h~~~V~~l 74 (304)
+++|.+||+.+.++....+.. .+ ...-..++|+|||++|+.+.. +..|.++| .+++.+.. +... . ++
T Consensus 96 ~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~ 170 (373)
T 2mad_H 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CY 170 (373)
T ss_pred CCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eE
Confidence 567999999998776554432 00 112457999999999988764 57899999 99887776 5422 1 24
Q ss_pred EECCCC-CeEEEEeCCCceEEEEeeeCCCeeEeEEeccc---eeec-eeeeEEcCCCCEEEEEeCCCeEEEecCCcccc-
Q psy4754 75 QVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDS---ILFG-ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR- 148 (304)
Q Consensus 75 ~~s~d~-~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~---~~~~-~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~- 148 (304)
.+.|++ +.+++.+.|+.+ ..+|. +.+......... .... .....+.+++..++..+..+.+.+.|+.....
T Consensus 171 ~~~~~~~~~~~~~~~dg~~--~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~ 247 (373)
T 2mad_H 171 HIHPGAPSTFYLLCAQGGL--AKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT 247 (373)
T ss_pred EEEeCCCceEEEEcCCCCE--EEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce
Confidence 455655 355666678874 57887 655542221000 0000 01234556655555555778999999754321
Q ss_pred -ceeccC----------cccceeEEEEcCCCcEEEEeec----------CCceEEEEeeecCCceEEEeecCceeeeeeE
Q psy4754 149 -VNHLMG----------HENRVSCLQVSPDGTAFSSGSW----------DTTLRCRLFDLRADKEVACYKKDSILFGATS 207 (304)
Q Consensus 149 -~~~~~~----------h~~~v~~v~~sp~~~~las~s~----------d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~ 207 (304)
+..+.- .......+.++|+++.+..... ++. +.++|..+.+.+..+.... ....
T Consensus 248 v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~--V~VID~~t~~vv~~i~~g~---~p~~ 322 (373)
T 2mad_H 248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE--VTSVTGLVGQTSSQISLGH---DVDA 322 (373)
T ss_pred EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe--EEEEECCCCEEEEEEECCC---CcCe
Confidence 111110 1223444789999887766543 234 5789999988877775443 3588
Q ss_pred EEEcCCCC-EEEEEe-CCCcEEEEeCCCceeeEEe
Q psy4754 208 VDFSVSGR-LLFAGY-NDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 208 ~~~s~~g~-~l~sg~-~d~~i~iwd~~~~~~~~~~ 240 (304)
++|+|||+ +++++. .+++|.+||..+++.+.++
T Consensus 323 i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 323 ISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 99999999 677766 5899999999998888774
No 220
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.25 E-value=2.4e-08 Score=88.35 Aligned_cols=223 Identities=15% Similarity=0.137 Sum_probs=139.3
Q ss_pred CCCCEE-EEeeCCCcEEEEeCCCc----eeeeeec------C-CcCcEEEEEECCCCCeEEEEeCC------CceEEEEe
Q psy4754 36 VSGRLL-FAGYNDYTINVWDSLKC----CRVNHLM------G-HENRVSCLQVSPDGTAFSSGSWD------TTLRCRLF 97 (304)
Q Consensus 36 ~~g~~l-~tg~~dg~v~iwd~~~~----~~~~~~~------~-h~~~V~~l~~s~d~~~l~sgs~D------~~i~~~~w 97 (304)
+++++| ++|..++.|.++|+.+. +..++++ . -...-..+.+.|+| .++++..+ +. +.+.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~--v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGG--ILML 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCE--EEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCe--EEEE
Confidence 777754 67888999999998654 4444442 0 01133467889999 77776555 45 4688
Q ss_pred eeCCCeeEeEEeccceeec-eeeeEEcCCCCEEEEEe-------------------CCCeEEEecCCccccceeccC--c
Q psy4754 98 DLRADKEVACYKKDSILFG-ATSVDFSVSGRLLFAGY-------------------NDYTINVWDSLKCCRVNHLMG--H 155 (304)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~l~sg~-------------------~dg~i~iwd~~~~~~~~~~~~--h 155 (304)
|..+.+.+..++....... .-.+-|+|+++.+++.. .+..|.+||+.+++.+.++.- .
T Consensus 170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 9888888777754321111 11356799999888874 479999999988766655432 1
Q ss_pred ccceeEEEE--cCCCcEEEEeec------CCceEEEEeeecCCc--eEEEe--ecCc--------------eeeeeeEEE
Q psy4754 156 ENRVSCLQV--SPDGTAFSSGSW------DTTLRCRLFDLRADK--EVACY--KKDS--------------ILFGATSVD 209 (304)
Q Consensus 156 ~~~v~~v~~--sp~~~~las~s~------d~~i~i~~~d~~~~~--~~~~~--~~~~--------------~~~~~~~~~ 209 (304)
......+.| +|+++++..++. +++|. +|....++ ....+ .... ....+..+.
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~--v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIW--LWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEE--EEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCceEE--EEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 123445655 999988776664 44653 33332221 11111 1100 012357889
Q ss_pred EcCCCCEEEEEe-CCCcEEEEeCC---CceeeEEeecc-----------c---cceEEEEEccCCCEEEEee
Q psy4754 210 FSVSGRLLFAGY-NDYTINVWDSL---KCCRVNHLMGH-----------E---NRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 210 ~s~~g~~l~sg~-~d~~i~iwd~~---~~~~~~~~~~h-----------~---~~i~~l~~sp~g~~lasgs 263 (304)
+||||++|.++. ..+.|.+||+. +.+.+..+.-. . +.-..++++|||++|..+.
T Consensus 328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999877765 45789999975 23444444221 0 1357899999999888775
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.21 E-value=3.8e-08 Score=84.71 Aligned_cols=203 Identities=12% Similarity=0.055 Sum_probs=127.2
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec---C-CcCcEEEEEECC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM---G-HENRVSCLQVSP 78 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~---~-h~~~V~~l~~s~ 78 (304)
++.|..||..+++.. .+.. ...+.+++|+++|.++++. .+ .|.+||..+++...... . ....+..+++.|
T Consensus 70 ~~~i~~~d~~~~~~~-~~~~---~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~ 143 (326)
T 2ghs_A 70 ERELHELHLASGRKT-VHAL---PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP 143 (326)
T ss_dssp GTEEEEEETTTTEEE-EEEC---SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT
T ss_pred CCEEEEEECCCCcEE-EEEC---CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC
Confidence 467888998887543 2222 2348899999999887765 44 49999988776432211 1 124688999999
Q ss_pred CCCeEEEEeCC----CceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-eCCCeEEEecCC--cc-cc--
Q psy4754 79 DGTAFSSGSWD----TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSL--KC-CR-- 148 (304)
Q Consensus 79 d~~~l~sgs~D----~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-~~dg~i~iwd~~--~~-~~-- 148 (304)
+|+++++...+ ....++.++ .++. ..+... ......++|+++++.++.+ ..++.|.+||.. ++ ..
T Consensus 144 ~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~--~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~ 218 (326)
T 2ghs_A 144 SGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFAD--ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK 218 (326)
T ss_dssp TSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEE--ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred CCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCC--CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC
Confidence 99977765422 233334455 3332 222111 1124578899999877655 457899999975 33 21
Q ss_pred ---ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEc-CCCCEEEEEe
Q psy4754 149 ---VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS-VSGRLLFAGY 221 (304)
Q Consensus 149 ---~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~l~sg~ 221 (304)
+..+......+..++++++|+++++...++.| ..||. +++.+..+.... ..+.+++|+ |++..|..++
T Consensus 219 ~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v--~~~d~-~g~~~~~i~~~~--~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 219 AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAV--DRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEE--EEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEE
T ss_pred ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEE--EEECC-CCCEEEEEECCC--CCcEEEEEecCCCCEEEEEe
Confidence 12222334567889999999877776555664 57887 455555544332 246889998 8887665544
No 222
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.19 E-value=4.7e-09 Score=93.37 Aligned_cols=226 Identities=12% Similarity=-0.006 Sum_probs=143.5
Q ss_pred CceeEEeeccccceEeeeecc--cc---ccceeEEEEcCCCCEEEEeeC--CCcEEEEeCCCceeeeeecCCcCcEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKD--SI---LFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHENRVSCLQ 75 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~--~~---~~~i~~~~~~~~g~~l~tg~~--dg~v~iwd~~~~~~~~~~~~h~~~V~~l~ 75 (304)
++.|.++|+.+++....++.. .+ ...-..++|+|||++++.+.. ++.|-+.|+.+++.+..+..-.. ..
T Consensus 148 ~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~ 223 (426)
T 3c75_H 148 TDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YH 223 (426)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EE
T ss_pred CCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----ee
Confidence 467999999999887665532 00 112456899999998887764 68999999999988877653111 12
Q ss_pred ECCCC-CeEEEEeCCCceEEEEeeeCCCeeEeE----EeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc--
Q psy4754 76 VSPDG-TAFSSGSWDTTLRCRLFDLRADKEVAC----YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR-- 148 (304)
Q Consensus 76 ~s~d~-~~l~sgs~D~~i~~~~wd~~~~~~~~~----~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~-- 148 (304)
..|++ ..+++.+.|+.+ .+.+....+.... +...... ....+.|.+++..++.....+.|.+.|......
T Consensus 224 ~~p~g~~~~v~~~~dG~~--~~V~~~~~~v~~~~~~~~~v~~~p-~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v 300 (426)
T 3c75_H 224 IFPASPTVFYMNCRDGSL--ARVDFADGETKVTNTEVFHTEDEL-LINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF 300 (426)
T ss_dssp EEEEETTEEEEEETTSSE--EEEECCTTCCEEEECCCCSCTTSC-BCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE
T ss_pred eccCCCcEEEEEcCCCCE--EEEECCCCcEEEEeeeeeccCCCc-eeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE
Confidence 23332 344455555553 2334432222211 1110000 012345788888877777889999999754321
Q ss_pred ceecc----------CcccceeEEEEcCCCcEEEEeec----------CCceEEEEeeecCCceEEEeecCceeeeeeEE
Q psy4754 149 VNHLM----------GHENRVSCLQVSPDGTAFSSGSW----------DTTLRCRLFDLRADKEVACYKKDSILFGATSV 208 (304)
Q Consensus 149 ~~~~~----------~h~~~v~~v~~sp~~~~las~s~----------d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 208 (304)
+..+. ........++++|+++.+..... ++. +.++|..+.+.+..+.... ....+
T Consensus 301 ~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~--VsVID~~T~kvv~~I~vg~---~P~gi 375 (426)
T 3c75_H 301 RAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF--VVVLNAETGERINKIELGH---EIDSI 375 (426)
T ss_dssp CCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE--EEEEETTTCCEEEEEEEEE---EECEE
T ss_pred eeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCE--EEEEECCCCeEEEEEECCC---CcCeE
Confidence 11100 01122233789999876655432 234 5789999999888776443 46899
Q ss_pred EEcCCCC-EEEEEe-CCCcEEEEeCCCceeeEEe
Q psy4754 209 DFSVSGR-LLFAGY-NDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 209 ~~s~~g~-~l~sg~-~d~~i~iwd~~~~~~~~~~ 240 (304)
+|+|||+ ++++.. .+++|.++|..+.+.++++
T Consensus 376 a~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 376 NVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 9999999 877776 5899999999999998887
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.18 E-value=6.8e-09 Score=98.61 Aligned_cols=221 Identities=14% Similarity=0.113 Sum_probs=136.1
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCc-------------EEEEeCCCce----eeeeecC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT-------------INVWDSLKCC----RVNHLMG 66 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~-------------v~iwd~~~~~----~~~~~~~ 66 (304)
.+|++||+.+++.+.. .........++|+ ||+.|+-++.+.. |++|++.+.. .+.....
T Consensus 155 ~~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~ 230 (693)
T 3iuj_A 155 REIHLMDVESKQPLET---PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIP 230 (693)
T ss_dssp EEEEEEETTTCSEEEE---EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSG
T ss_pred EEEEEEECCCCCCCcc---ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCC
Confidence 5799999999986542 1111113678999 9998887777744 9999987653 2333333
Q ss_pred -CcCcEEEEEECCCCCeEEE-EeCCCc-eEEEEeeeCCCe-eEeEEeccceeeceeeeEEcCCCCEEEEEeC----CCeE
Q psy4754 67 -HENRVSCLQVSPDGTAFSS-GSWDTT-LRCRLFDLRADK-EVACYKKDSILFGATSVDFSVSGRLLFAGYN----DYTI 138 (304)
Q Consensus 67 -h~~~V~~l~~s~d~~~l~s-gs~D~~-i~~~~wd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~----dg~i 138 (304)
|...+..+.|+|||++|+- .+.+.. -.++++|+.... ....+..... ..... +++++..++..++ .+.|
T Consensus 231 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~--~~~~~-~~~~g~~l~~~t~~~~~~~~l 307 (693)
T 3iuj_A 231 AQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD--ADVSL-VDNKGSTLYLLTNRDAPNRRL 307 (693)
T ss_dssp GGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS--SCEEE-EEEETTEEEEEECTTCTTCEE
T ss_pred CCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC--ceEEE-EeccCCEEEEEECCCCCCCEE
Confidence 5556788999999997753 333322 246889986652 2233322211 11122 5666666655443 3689
Q ss_pred EEecCCcccc--ceeccCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCC
Q psy4754 139 NVWDSLKCCR--VNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR 215 (304)
Q Consensus 139 ~iwd~~~~~~--~~~~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 215 (304)
..+|+.+... ...+..|...+. .|+|+++.++... .++.-.+++||+.... ...+.... ...+..+.++|++.
T Consensus 308 ~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~-~~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 308 VTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPG-LGSVSGFNGKHDDP 383 (693)
T ss_dssp EEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSS-SSEEEECCCCTTCS
T ss_pred EEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCC-CceEEeeecCCCCC
Confidence 9999876543 345566666665 8888888776554 4554456788887543 23322111 11245566778887
Q ss_pred EEEEEeCC----CcEEEEeCCCce
Q psy4754 216 LLFAGYND----YTINVWDSLKCC 235 (304)
Q Consensus 216 ~l~sg~~d----~~i~iwd~~~~~ 235 (304)
.++....+ +++..||+.+++
T Consensus 384 ~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 384 ALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEecCCCCCCEEEEEECCCCe
Confidence 76665444 789999987654
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.15 E-value=1.2e-08 Score=96.78 Aligned_cols=274 Identities=12% Similarity=0.067 Sum_probs=168.7
Q ss_pred CceeEEeeccccceEeeeecccccc-------c-e-eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC--CcCcE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILF-------G-A-TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--HENRV 71 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~-------~-i-~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~--h~~~V 71 (304)
+++|.-+|..+++++=.+....... . + ..++. .+..++.++.|+.+..+|..+|+.+=.+.. +....
T Consensus 79 ~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~ 156 (689)
T 1yiq_A 79 FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRS 156 (689)
T ss_dssp GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSC
T ss_pred CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCC
Confidence 4678889999998864443221100 0 0 11222 356777888999999999999987644332 11111
Q ss_pred EEEEECC---CCCeEEEEe-----CCCceEEEEeeeCCCeeEeEEeccce--e------------------------e--
Q psy4754 72 SCLQVSP---DGTAFSSGS-----WDTTLRCRLFDLRADKEVACYKKDSI--L------------------------F-- 115 (304)
Q Consensus 72 ~~l~~s~---d~~~l~sgs-----~D~~i~~~~wd~~~~~~~~~~~~~~~--~------------------------~-- 115 (304)
..+..+| ++..++..+ .|+. +..+|..+++.+..+..... . .
T Consensus 157 ~~~~~sP~v~~g~v~vg~~~~~~~~~g~--v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~ 234 (689)
T 1yiq_A 157 YTITGAPRVVNGKVVIGNGGAEFGVRGY--VTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGG 234 (689)
T ss_dssp CBCCSCCEEETTEEEECCBCTTTCCBCE--EEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEEC
T ss_pred ccccCCcEEECCEEEEEeCCCccCCCCE--EEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCC
Confidence 1111112 444444322 2566 46899999988877652100 0 0
Q ss_pred -ceeeeEEcCCCCEEEEEeCCCe-------------------EEEecCCccccceeccC--cc-------cceeEEEEcC
Q psy4754 116 -GATSVDFSVSGRLLFAGYNDYT-------------------INVWDSLKCCRVNHLMG--HE-------NRVSCLQVSP 166 (304)
Q Consensus 116 -~~~~~~~s~~~~~l~sg~~dg~-------------------i~iwd~~~~~~~~~~~~--h~-------~~v~~v~~sp 166 (304)
.-..+.++++...++.+..++. |..+|..+++.+=++.. |. .++.......
T Consensus 235 ~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~ 314 (689)
T 1yiq_A 235 TAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI 314 (689)
T ss_dssp CCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred ccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc
Confidence 0124678888889999887764 99999998876544332 21 1222222233
Q ss_pred CCc---EEEEeecCCceEEEEeeecCCceEEEeecCcee-------------------------------------eeee
Q psy4754 167 DGT---AFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL-------------------------------------FGAT 206 (304)
Q Consensus 167 ~~~---~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~-------------------------------------~~~~ 206 (304)
+|+ .++.++.++.+ +.+|.++++.+...+..... ..-.
T Consensus 315 ~G~~~~~v~~~~~~G~l--~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~ 392 (689)
T 1yiq_A 315 DGKPRKVLMQAPKNGFF--YVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQ 392 (689)
T ss_dssp TTEEEEEEEECCTTSEE--EEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSS
T ss_pred CCcEEEEEEEECCCCeE--EEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCC
Confidence 564 68888889985 58998888876322211000 0001
Q ss_pred EEEEcCCCCEEEEEeC---------------------------------------------CCcEEEEeCCCceeeEEee
Q psy4754 207 SVDFSVSGRLLFAGYN---------------------------------------------DYTINVWDSLKCCRVNHLM 241 (304)
Q Consensus 207 ~~~~s~~g~~l~sg~~---------------------------------------------d~~i~iwd~~~~~~~~~~~ 241 (304)
.++|+|+..++.+... ++.++.||+.+++.+-++.
T Consensus 393 ~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~ 472 (689)
T 1yiq_A 393 PMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP 472 (689)
T ss_dssp CCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE
T ss_pred cceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc
Confidence 3678888887776532 3779999999999887776
Q ss_pred ccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheee
Q psy4754 242 GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 242 ~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
.+. ++..-.++..+..+..|+.|+.++.||.+.+.....++
T Consensus 473 ~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 473 YVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp ESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 543 34444667778889999999999999987766444443
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.15 E-value=5.8e-09 Score=98.73 Aligned_cols=255 Identities=12% Similarity=0.036 Sum_probs=160.0
Q ss_pred CCceeEEeeccccceEeeeecc-cc--ccceeEEEEcCCCCEEEEeeC------CCcEEEEeCCCceeeeeecCCc----
Q psy4754 2 GKNHCRLFDLRADKEVACYKKD-SI--LFGATSVDFSVSGRLLFAGYN------DYTINVWDSLKCCRVNHLMGHE---- 68 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~-~~--~~~i~~~~~~~~g~~l~tg~~------dg~v~iwd~~~~~~~~~~~~h~---- 68 (304)
.|+++..+|..+++++-.+... .. ...+.+.-...++ .++.++. +|.|+.||..+|+.+-.+....
T Consensus 136 ~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~ 214 (677)
T 1kb0_A 136 WDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPS 214 (677)
T ss_dssp TTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTT
T ss_pred CCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcc
Confidence 4678999999999987555432 10 0112211111134 4444443 7999999999987664433211
Q ss_pred ----------------------------CcEEEEEECCCCCeEEEEeCCCce-----------------EEEEeeeCCCe
Q psy4754 69 ----------------------------NRVSCLQVSPDGTAFSSGSWDTTL-----------------RCRLFDLRADK 103 (304)
Q Consensus 69 ----------------------------~~V~~l~~s~d~~~l~sgs~D~~i-----------------~~~~wd~~~~~ 103 (304)
.....+++.+++..++.+..++.. .+..+|..+++
T Consensus 215 ~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~ 294 (677)
T 1kb0_A 215 KPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK 294 (677)
T ss_dssp SCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC
T ss_pred ccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC
Confidence 011256788888888877655421 24678988888
Q ss_pred eEeEEeccce-------eeceeeeEEcCCC---CEEEEEeCCCeEEEecCCccccceeccCcc----------c-ce---
Q psy4754 104 EVACYKKDSI-------LFGATSVDFSVSG---RLLFAGYNDYTINVWDSLKCCRVNHLMGHE----------N-RV--- 159 (304)
Q Consensus 104 ~~~~~~~~~~-------~~~~~~~~~s~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~----------~-~v--- 159 (304)
.+..++.... ......+....+| ..++.++.+|.+.++|..+++.+-.+.-.. . ++
T Consensus 295 ~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~ 374 (677)
T 1kb0_A 295 YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIA 374 (677)
T ss_dssp EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECG
T ss_pred EEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeecc
Confidence 8887764211 0111222333466 678889999999999998887654322100 0 00
Q ss_pred ---------------------eEEEEcCCCcEEEEeecC-----------------------------------------
Q psy4754 160 ---------------------SCLQVSPDGTAFSSGSWD----------------------------------------- 177 (304)
Q Consensus 160 ---------------------~~v~~sp~~~~las~s~d----------------------------------------- 177 (304)
..++|+|+..++++...+
T Consensus 375 ~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 454 (677)
T 1kb0_A 375 AARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSK 454 (677)
T ss_dssp GGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSC
T ss_pred ccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCC
Confidence 156889988887765432
Q ss_pred --CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecc-ccceEEEEEcc
Q psy4754 178 --TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-ENRVSCLQVSP 254 (304)
Q Consensus 178 --~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-~~~i~~l~~sp 254 (304)
+. +..||+.+++.+-.++... +.....+...+..++.++.|+.+++||..+++.+.++... ...-..+.|++
T Consensus 455 ~~g~--l~A~D~~tG~~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~ 529 (677)
T 1kb0_A 455 PFGR--LLAWDPVAQKAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMV 529 (677)
T ss_dssp CEEE--EEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred CccE--EEEEeCCCCcEEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEe
Confidence 33 4678888887654443322 2234456678888999999999999999999999888643 33345567788
Q ss_pred CCCEEEEe
Q psy4754 255 DGTAFSSG 262 (304)
Q Consensus 255 ~g~~lasg 262 (304)
+|+.++..
T Consensus 530 ~G~~~v~~ 537 (677)
T 1kb0_A 530 DGRQYVSV 537 (677)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 99766543
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.14 E-value=3.9e-09 Score=91.60 Aligned_cols=200 Identities=12% Similarity=0.094 Sum_probs=125.5
Q ss_pred CcEEEEEECCCCCeEEEEe-C-CCceEEEEeeeCCCeeEeEEec-----cceeeceeeeEEcCCCCEEEEEeC-----CC
Q psy4754 69 NRVSCLQVSPDGTAFSSGS-W-DTTLRCRLFDLRADKEVACYKK-----DSILFGATSVDFSVSGRLLFAGYN-----DY 136 (304)
Q Consensus 69 ~~V~~l~~s~d~~~l~sgs-~-D~~i~~~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~l~sg~~-----dg 136 (304)
.....++++++|+.+++.. + ++.+ ++|.+..++ +..+.. ......+..++++++++++++-.. +.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~--~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEM--QVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSC--SEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCce--EEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 6788999999999998863 2 3322 455554333 222211 112335678999999875554433 57
Q ss_pred eEEEecCCccccceecc------CcccceeEEEEcCC-CcEEEEee---cCCceEEEEeeecCCceEEEeecC-------
Q psy4754 137 TINVWDSLKCCRVNHLM------GHENRVSCLQVSPD-GTAFSSGS---WDTTLRCRLFDLRADKEVACYKKD------- 199 (304)
Q Consensus 137 ~i~iwd~~~~~~~~~~~------~h~~~v~~v~~sp~-~~~las~s---~d~~i~i~~~d~~~~~~~~~~~~~------- 199 (304)
.|.+||+.+++.+..+. .+...+..++++|+ +..+++.+ .++.+ .+||+.+++.......+
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i--~v~d~~~g~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAAL--IRVDLQTGLAARVLQGYPGIAPED 171 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEE--EEEETTTCCEEEECTTCTTTSCCS
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeE--EEEECCCCCEEEEecCCCcccccc
Confidence 89999988776544332 12345689999986 45555544 45554 68998766554433210
Q ss_pred ------c--------------eeeeeeEEEEcCCCCEEEEEeCCC-cEEEEeCC---Cc-----eeeE--EeeccccceE
Q psy4754 200 ------S--------------ILFGATSVDFSVSGRLLFAGYNDY-TINVWDSL---KC-----CRVN--HLMGHENRVS 248 (304)
Q Consensus 200 ------~--------------~~~~~~~~~~s~~g~~l~sg~~d~-~i~iwd~~---~~-----~~~~--~~~~h~~~i~ 248 (304)
. ....++.++++|+|+.|..+...+ .+..++.. .+ +... ...++.....
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd 251 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICD 251 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence 0 002357899999999888876655 44444421 00 0000 1223444567
Q ss_pred EEEEccCCCEEEEeecCCeeeeccc
Q psy4754 249 CLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 249 ~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
.++++++|..+++...++.|..|+.
T Consensus 252 gia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 252 GISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEEET
T ss_pred eEEECCCCCEEEEccCCCeEEEEEC
Confidence 7999999999999999999999997
No 227
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.11 E-value=5.7e-07 Score=74.81 Aligned_cols=241 Identities=7% Similarity=-0.012 Sum_probs=142.1
Q ss_pred ceeEEeeccccceE-----eeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEEC
Q psy4754 4 NHCRLFDLRADKEV-----ACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 4 ~~v~~wd~~~~~~~-----~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 77 (304)
+.|+.+|++++... +.+. ........++|++++. ++++-...+.|..++.........+.........+++.
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~--~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d 87 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLH--IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALD 87 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEE--EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEE
T ss_pred CeEEEEEecCcccccccceeeec--CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEE
Confidence 36788888776421 1111 1122367899998654 55566678899999987554322222222467889999
Q ss_pred CCCCeEE-EEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC---CCeEEEecCCccccceec-
Q psy4754 78 PDGTAFS-SGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN---DYTINVWDSLKCCRVNHL- 152 (304)
Q Consensus 78 ~d~~~l~-sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~- 152 (304)
+++..|+ +....+.| ..++............. ......++++|++..++.+.. .+.|..+++.... ...+
T Consensus 88 ~~~~~lyv~d~~~~~I--~~~~~~g~~~~~~~~~~--~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~ 162 (267)
T 1npe_A 88 HLGRTIFWTDSQLDRI--EVAKMDGTQRRVLFDTG--LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILA 162 (267)
T ss_dssp TTTTEEEEEETTTTEE--EEEETTSCSCEEEECSS--CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEE
T ss_pred ecCCeEEEEECCCCEE--EEEEcCCCCEEEEEECC--CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEE
Confidence 8765544 44445553 56776543222112111 123467889997777766654 3688887754322 2222
Q ss_pred cCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 153 MGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 153 ~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
.........++++|++..+..+. ..+. |..+|.............. .+..++.. ++.++++....+.|..+|.
T Consensus 163 ~~~~~~P~gia~d~~~~~lyv~d~~~~~--I~~~~~~g~~~~~~~~~~~---~P~gi~~d-~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 163 QDNLGLPNGLTFDAFSSQLCWVDAGTHR--AECLNPAQPGRRKVLEGLQ---YPFAVTSY-GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp CTTCSCEEEEEEETTTTEEEEEETTTTE--EEEEETTEEEEEEEEECCC---SEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred ECCCCCCcEEEEcCCCCEEEEEECCCCE--EEEEecCCCceEEEecCCC---CceEEEEe-CCEEEEEECCCCeEEEEeC
Confidence 12234578999999876555444 4455 4578876543332222211 23455554 4555555556689999999
Q ss_pred CCceeeEEeeccc-cceEEEEEccCCC
Q psy4754 232 LKCCRVNHLMGHE-NRVSCLQVSPDGT 257 (304)
Q Consensus 232 ~~~~~~~~~~~h~-~~i~~l~~sp~g~ 257 (304)
.+++.+.++.... .....+++.|++.
T Consensus 237 ~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 237 AISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCCceEEEccccccccceeeecCccC
Confidence 9888888775433 2467888988864
No 228
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.10 E-value=5.5e-08 Score=82.74 Aligned_cols=203 Identities=13% Similarity=0.036 Sum_probs=126.6
Q ss_pred eeeeeecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCe
Q psy4754 59 CRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 137 (304)
Q Consensus 59 ~~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~ 137 (304)
..+..+..+..+.....|+++++ +++++..++.+ ..|+.. +. ...+.... ..+..+.++++++++++...++.
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i--~~~~~~-g~-~~~~~~~~--~~~~gl~~d~dG~l~v~~~~~~~ 108 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRV--LGWRED-GT-VDVLLDAT--AFTNGNAVDAQQRLVHCEHGRRA 108 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEE--EEEETT-SC-EEEEEESC--SCEEEEEECTTSCEEEEETTTTE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEE--EEEeCC-CC-EEEEeCCC--CccceeeECCCCCEEEEECCCCE
Confidence 34444555566788999999998 56676666664 678774 33 23332221 13567889999986666556689
Q ss_pred EEEecCCccccceecc----Cc-ccceeEEEEcCCCcEEEE----eecC-----------CceEEEEeeecCCceEEEee
Q psy4754 138 INVWDSLKCCRVNHLM----GH-ENRVSCLQVSPDGTAFSS----GSWD-----------TTLRCRLFDLRADKEVACYK 197 (304)
Q Consensus 138 i~iwd~~~~~~~~~~~----~h-~~~v~~v~~sp~~~~las----~s~d-----------~~i~i~~~d~~~~~~~~~~~ 197 (304)
|.+||.. ++ +..+. +. ...+..++++|+|+++++ |..+ ..-.+..+|..+++.....
T Consensus 109 v~~~~~~-g~-~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~- 185 (305)
T 3dr2_A 109 ITRSDAD-GQ-AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA- 185 (305)
T ss_dssp EEEECTT-SC-EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-
T ss_pred EEEECCC-CC-EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-
Confidence 9999864 32 22221 11 134678999999998886 3321 1223456776555443222
Q ss_pred cCceeeeeeEEEEcCCCCEEEEEeCC------CcEEEEeCCCceeeE---Ee-eccccceEEEEEccCCCEEEEeecCCe
Q psy4754 198 KDSILFGATSVDFSVSGRLLFAGYND------YTINVWDSLKCCRVN---HL-MGHENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 198 ~~~~~~~~~~~~~s~~g~~l~sg~~d------~~i~iwd~~~~~~~~---~~-~~h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
.....+.++|+|+++.|..+... +.|.+|++.... +. .+ ....+....++++++|++.++. .+ .
T Consensus 186 ---~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-g 259 (305)
T 3dr2_A 186 ---DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-G 259 (305)
T ss_dssp ---EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-E
T ss_pred ---cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-c
Confidence 11245789999999977776655 689999876543 21 11 1123445678999999966554 44 4
Q ss_pred eeecccccc
Q psy4754 268 LRDEESKNR 276 (304)
Q Consensus 268 i~~~~~~~~ 276 (304)
|..|+.+..
T Consensus 260 v~~~~~~g~ 268 (305)
T 3dr2_A 260 VCVFDSDGQ 268 (305)
T ss_dssp EEEECTTSC
T ss_pred EEEECCCCC
Confidence 888886443
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.10 E-value=1.5e-08 Score=96.06 Aligned_cols=255 Identities=10% Similarity=0.052 Sum_probs=157.2
Q ss_pred CCceeEEeeccccceEeeeecc-cc--ccceeEEEEcCCCCEEEEee-----CCCcEEEEeCCCceeeeeecC--C----
Q psy4754 2 GKNHCRLFDLRADKEVACYKKD-SI--LFGATSVDFSVSGRLLFAGY-----NDYTINVWDSLKCCRVNHLMG--H---- 67 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~-~~--~~~i~~~~~~~~g~~l~tg~-----~dg~v~iwd~~~~~~~~~~~~--h---- 67 (304)
.|+++..+|..+++++-.+... .. ...+.+.-.-.++.+++..+ .+|.|..||..+|+.+=.+.. +
T Consensus 129 ~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~ 208 (689)
T 1yiq_A 129 LDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKL 208 (689)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTS
T ss_pred cCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccc
Confidence 4788999999999987544432 10 01121110111455544332 378999999999876533321 0
Q ss_pred -------------------------cCcEEEEEECCCCCeEEEEeCCCce-----------------EEEEeeeCCCeeE
Q psy4754 68 -------------------------ENRVSCLQVSPDGTAFSSGSWDTTL-----------------RCRLFDLRADKEV 105 (304)
Q Consensus 68 -------------------------~~~V~~l~~s~d~~~l~sgs~D~~i-----------------~~~~wd~~~~~~~ 105 (304)
......+++.|+.+.++.++.++.. .+..+|..+++.+
T Consensus 209 ~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~ 288 (689)
T 1yiq_A 209 PPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYV 288 (689)
T ss_dssp CCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEE
T ss_pred ccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCcee
Confidence 0011256788888888888776530 2467999999988
Q ss_pred eEEecccee---e----ceeeeEEcCCCC---EEEEEeCCCeEEEecCCccccceecc-Cc-------------------
Q psy4754 106 ACYKKDSIL---F----GATSVDFSVSGR---LLFAGYNDYTINVWDSLKCCRVNHLM-GH------------------- 155 (304)
Q Consensus 106 ~~~~~~~~~---~----~~~~~~~s~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~-~h------------------- 155 (304)
..++..... + ......+..+++ .++.++.+|.++++|..+++.+.... ..
T Consensus 289 W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~ 368 (689)
T 1yiq_A 289 WHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEE 368 (689)
T ss_dssp EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHH
T ss_pred EeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchh
Confidence 877642110 0 011112223454 68888999999999998887652110 00
Q ss_pred --------cc-----------ceeEEEEcCCCcEEEEeecC---------------------------------------
Q psy4754 156 --------EN-----------RVSCLQVSPDGTAFSSGSWD--------------------------------------- 177 (304)
Q Consensus 156 --------~~-----------~v~~v~~sp~~~~las~s~d--------------------------------------- 177 (304)
.. .-..++|+|+..++++.+.+
T Consensus 369 ~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~ 448 (689)
T 1yiq_A 369 NAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLE 448 (689)
T ss_dssp HHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHH
T ss_pred hccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCC
Confidence 00 01137889988777765322
Q ss_pred ------CceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecccc-ceEEE
Q psy4754 178 ------TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCL 250 (304)
Q Consensus 178 ------~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-~i~~l 250 (304)
+. +..||+.+++.+-.++... +...-.+...+.+++.|+.|+.++.||..+++++.++....+ .-..+
T Consensus 449 ~~~~~~g~--l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ 523 (689)
T 1yiq_A 449 MAKSWSGK--LIAWDPVKQQAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPV 523 (689)
T ss_dssp HHTTCEEE--EEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred CCCCccee--EEEEECCCCCeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCce
Confidence 33 4678988887654443332 122234566788999999999999999999999988875432 23457
Q ss_pred EEccCCCEEEE
Q psy4754 251 QVSPDGTAFSS 261 (304)
Q Consensus 251 ~~sp~g~~las 261 (304)
.|+.+|+.++.
T Consensus 524 ty~~~G~qyv~ 534 (689)
T 1yiq_A 524 TYSVDGEQYVT 534 (689)
T ss_dssp EEEETTEEEEE
T ss_pred EEEECCEEEEE
Confidence 78889986554
No 230
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.08 E-value=2.5e-08 Score=91.15 Aligned_cols=236 Identities=14% Similarity=0.046 Sum_probs=152.5
Q ss_pred CCCEEE-EeeCCCcEEEEeCCCceeeeeecCC-cCcEEEEEE-C-CCCCeEEEEeC------------------CCceEE
Q psy4754 37 SGRLLF-AGYNDYTINVWDSLKCCRVNHLMGH-ENRVSCLQV-S-PDGTAFSSGSW------------------DTTLRC 94 (304)
Q Consensus 37 ~g~~l~-tg~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~-s-~d~~~l~sgs~------------------D~~i~~ 94 (304)
||+++. +...+..|.+-|+.+.+..+.+.-- ......+++ + |++++++.++. ++. +
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~--v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV--F 177 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE--E
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce--E
Confidence 777665 5555678999999998877633221 234668887 5 89999888852 223 4
Q ss_pred EEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCC--------------------------------------
Q psy4754 95 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY-------------------------------------- 136 (304)
Q Consensus 95 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg-------------------------------------- 136 (304)
.++|..+.+....+.-... ...++++|+++++++.+.+.
T Consensus 178 tvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 6788887766665543221 23577899999998887543
Q ss_pred eEEEecCCc--ccc-ceeccCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCc------------eEEEeecCc
Q psy4754 137 TINVWDSLK--CCR-VNHLMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADK------------EVACYKKDS 200 (304)
Q Consensus 137 ~i~iwd~~~--~~~-~~~~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~------------~~~~~~~~~ 200 (304)
.|.+.|..+ +.. +..+. -.....++.++|||++++.++ .+.++ .++|+.+.+ ........
T Consensus 255 ~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~V--sVid~~~~~~~~~~~l~~~~~v~~~v~vG- 330 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTV--TVLDVTRFDAVFYENADPRSAVVAEPELG- 330 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBE--EEEEGGGHHHHHHSCCCGGGGEEECCBCC-
T ss_pred cEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeE--EEEECcccccccccccCcccceEEEcCCC-
Confidence 366666665 222 22221 123466799999999877655 45554 689988643 22222222
Q ss_pred eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----------ceeeEEeeccccce-----EEEEEccCCCEEEEe---
Q psy4754 201 ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK----------CCRVNHLMGHENRV-----SCLQVSPDGTAFSSG--- 262 (304)
Q Consensus 201 ~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~----------~~~~~~~~~h~~~i-----~~l~~sp~g~~lasg--- 262 (304)
.....++|+|+|..+++..-|++|.+||+.+ .+.+.++.-|..+- ..+.++|||++|.+.
T Consensus 331 --~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 331 --LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp --SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred --CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 3467899999996666778899999999876 45667776666542 223568999999986
Q ss_pred ecCCee----------eeccccccchhheee
Q psy4754 263 SWDTTL----------RDEESKNRYMQYLLR 283 (304)
Q Consensus 263 s~D~~i----------~~~~~~~~~~~~~~~ 283 (304)
|.|+.+ ++.+...+.|..+..
T Consensus 409 skdr~~~~gp~~~~~~ql~dis~~~m~lv~d 439 (595)
T 1fwx_A 409 SKDRFLNVGPLKPENDQLIDISGDKMVLVHD 439 (595)
T ss_dssp CTTSSCCCCSSCCEEEEEEECSSSSCEEEEE
T ss_pred CccccccCCCCCCCcceEEEcCCCcEEEEEE
Confidence 346653 566654444444443
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.07 E-value=8.9e-08 Score=84.75 Aligned_cols=216 Identities=13% Similarity=0.126 Sum_probs=135.0
Q ss_pred CCceeEEeecccc----ceEeeee-ccc---ccc-ceeEEEEcCCCCEEEEeeCC------CcEEEEeCCCceeeeeecC
Q psy4754 2 GKNHCRLFDLRAD----KEVACYK-KDS---ILF-GATSVDFSVSGRLLFAGYND------YTINVWDSLKCCRVNHLMG 66 (304)
Q Consensus 2 ~~~~v~~wd~~~~----~~~~~~~-~~~---~~~-~i~~~~~~~~g~~l~tg~~d------g~v~iwd~~~~~~~~~~~~ 66 (304)
++++|.++|+.++ +....+. .+. .+. .-..+...|+| +++++..+ |.+.+.|..+++.+.+...
T Consensus 104 ~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~ 182 (462)
T 2ece_A 104 RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEI 182 (462)
T ss_dssp TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCS
T ss_pred CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEcc
Confidence 5688999999876 3333331 001 011 13456788999 77776665 8999999999998887753
Q ss_pred CcCc---EEEEEECCCCCeEEEEeC-------------------CCceEEEEeeeCCCeeEeEEeccceeeceeeeEE--
Q psy4754 67 HENR---VSCLQVSPDGTAFSSGSW-------------------DTTLRCRLFDLRADKEVACYKKDSILFGATSVDF-- 122 (304)
Q Consensus 67 h~~~---V~~l~~s~d~~~l~sgs~-------------------D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~-- 122 (304)
-.++ -..+-|+|+++.+++..| +.+ +.+||+.+.+.+..+...........+.|
T Consensus 183 ~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~--V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~ 260 (462)
T 2ece_A 183 DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR--IHFWDLRKRKRIHSLTLGEENRMALELRPLH 260 (462)
T ss_dssp BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE--EEEEETTTTEEEEEEESCTTEEEEEEEEECS
T ss_pred CCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCE--EEEEECCCCcEeeEEecCCCCCccceeEeeE
Confidence 2221 235778999999999864 455 57899988777666654211112234444
Q ss_pred cCCCCEEEEEeC------CCeEEEecCCccc--cce-----------ec-------cCcccceeEEEEcCCCcEEEEeec
Q psy4754 123 SVSGRLLFAGYN------DYTINVWDSLKCC--RVN-----------HL-------MGHENRVSCLQVSPDGTAFSSGSW 176 (304)
Q Consensus 123 s~~~~~l~sg~~------dg~i~iwd~~~~~--~~~-----------~~-------~~h~~~v~~v~~sp~~~~las~s~ 176 (304)
+|++++++.++. ++.|.+|....+. ... .+ .+-...+..+.+|||+++|..+.+
T Consensus 261 ~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr 340 (462)
T 2ece_A 261 DPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW 340 (462)
T ss_dssp STTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET
T ss_pred CCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC
Confidence 999999888764 5677654322110 000 00 000235778999999999888776
Q ss_pred CCceEEEEeeecC---CceEEEeecCce------------eeeeeEEEEcCCCCEEEEEe
Q psy4754 177 DTTLRCRLFDLRA---DKEVACYKKDSI------------LFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 177 d~~i~i~~~d~~~---~~~~~~~~~~~~------------~~~~~~~~~s~~g~~l~sg~ 221 (304)
..- .|.+||+.. .+.+........ ......++++|||++|.++.
T Consensus 341 g~d-~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 341 GIG-EVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTT-EEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCC-EEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 443 257888753 234444433211 01246789999999998887
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.04 E-value=5.8e-08 Score=91.85 Aligned_cols=269 Identities=12% Similarity=0.031 Sum_probs=171.1
Q ss_pred CceeEEeeccccceEeeeecccccc---------ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCC-c----
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILF---------GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-E---- 68 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~---------~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h-~---- 68 (304)
+++|.-+|..+++++=.+....... ....+++ .+..++.++.|+.+..+|..+|+.+-.+..+ .
T Consensus 86 ~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~ 163 (677)
T 1kb0_A 86 WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGS 163 (677)
T ss_dssp GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSS
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcC
Confidence 4678889999998864433321110 0122333 3567778889999999999999876555433 1
Q ss_pred CcEEE-EEECCCCCeEEEEeC------CCceEEEEeeeCCCeeEeEEecccee---------------------------
Q psy4754 69 NRVSC-LQVSPDGTAFSSGSW------DTTLRCRLFDLRADKEVACYKKDSIL--------------------------- 114 (304)
Q Consensus 69 ~~V~~-l~~s~d~~~l~sgs~------D~~i~~~~wd~~~~~~~~~~~~~~~~--------------------------- 114 (304)
..+.+ ..+ .+..++.++. ++. ++.+|..+++.+..+......
T Consensus 164 ~~~~~~p~v--~~~~v~v~~~~~~~~~~g~--v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~ 239 (677)
T 1kb0_A 164 LTITGAPRV--FKGKVIIGNGGAEYGVRGY--ITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAG 239 (677)
T ss_dssp CBCCSCCEE--ETTEEEECCBCTTTCCBCE--EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHC
T ss_pred cccccCcEE--ECCEEEEEecccccCCCCE--EEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeC
Confidence 11211 111 1334444443 566 468999998888776532111
Q ss_pred ec---eeeeEEcCCCCEEEEEeCCC-------------------eEEEecCCccccceecc--Ccc-------cceeEEE
Q psy4754 115 FG---ATSVDFSVSGRLLFAGYNDY-------------------TINVWDSLKCCRVNHLM--GHE-------NRVSCLQ 163 (304)
Q Consensus 115 ~~---~~~~~~s~~~~~l~sg~~dg-------------------~i~iwd~~~~~~~~~~~--~h~-------~~v~~v~ 163 (304)
.+ ...+.+++++..++.+..++ .|..+|..+++.+=++. .|. ....-+.
T Consensus 240 ~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~ 319 (677)
T 1kb0_A 240 GGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILAD 319 (677)
T ss_dssp EECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEE
T ss_pred CCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEe
Confidence 00 12467888888998887664 59999998887654332 221 1222333
Q ss_pred EcCCC---cEEEEeecCCceEEEEeeecCCceEEEeecCcee--------------------------e-------eeeE
Q psy4754 164 VSPDG---TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL--------------------------F-------GATS 207 (304)
Q Consensus 164 ~sp~~---~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~--------------------------~-------~~~~ 207 (304)
...+| ..++.++.++.+ +++|.++++.+-..+..... . .-..
T Consensus 320 ~~~dG~~~~~l~~~~~~G~l--~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~ 397 (677)
T 1kb0_A 320 IKIAGKPRKVILHAPKNGFF--FVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHP 397 (677)
T ss_dssp EEETTEEEEEEEECCTTSEE--EEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSC
T ss_pred cccCCcEeeEEEEECCCCEE--EEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCC
Confidence 44477 578889999985 68999888876554321100 0 0014
Q ss_pred EEEcCCCCEEEEEeC-------------------------------------------CCcEEEEeCCCceeeEEeeccc
Q psy4754 208 VDFSVSGRLLFAGYN-------------------------------------------DYTINVWDSLKCCRVNHLMGHE 244 (304)
Q Consensus 208 ~~~s~~g~~l~sg~~-------------------------------------------d~~i~iwd~~~~~~~~~~~~h~ 244 (304)
++++|++.++.+... .+.|..||+.+++.+-++. +.
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~ 476 (677)
T 1kb0_A 398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HV 476 (677)
T ss_dssp CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ES
T ss_pred ceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CC
Confidence 678999888777543 1679999999998887665 44
Q ss_pred cceEEEEEccCCCEEEEeecCCeeeeccccccchhh
Q psy4754 245 NRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQY 280 (304)
Q Consensus 245 ~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~ 280 (304)
.++....+++++..+..++.|+.++.||...+....
T Consensus 477 ~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 477 SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence 456666777888888889999999999887655333
No 233
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.01 E-value=1.3e-07 Score=78.54 Aligned_cols=208 Identities=12% Similarity=0.102 Sum_probs=134.5
Q ss_pred eeeeeecCCcC--cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-eCC
Q psy4754 59 CRVNHLMGHEN--RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YND 135 (304)
Q Consensus 59 ~~~~~~~~h~~--~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-~~d 135 (304)
+.+.++ .|.. ....+.|++|+.++++.+..+.-.++..|+.+++.+..+......++ ..+++. ++.++.+ -.+
T Consensus 10 ~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fg-eGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFG-EGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCE-EEEEEE--TTEEEEEETTC
T ss_pred eEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcce-EEEEEe--CCEEEEEEecC
Confidence 344444 3443 46799999987666666542222357899999888877654332221 233443 5556554 457
Q ss_pred CeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc---eeeeeeEEEEcC
Q psy4754 136 YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS---ILFGATSVDFSV 212 (304)
Q Consensus 136 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~ 212 (304)
+.+.++|..+.+.+.++.--... ...+++|++.++.+..++. +.++|..+.+.+..+.... .....+.+.|.
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~--l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSI--LYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSE--EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCe--EEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 99999999888777765321122 2335567766665555555 4689998877766654321 11235677787
Q ss_pred CCCEEEEEeCCCcEEEEeCCCceeeEEeeccc-------------cceEEEEEccCCC-EEEEeecCCeeeeccccc
Q psy4754 213 SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE-------------NRVSCLQVSPDGT-AFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 213 ~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-------------~~i~~l~~sp~g~-~lasgs~D~~i~~~~~~~ 275 (304)
+|+.++....++.|.+.|..+++.+.++.-.. ...+.|+|+|++. .++++....++..-++.+
T Consensus 161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 77777777678899999999999888875321 2558999999875 677777777776555543
No 234
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.01 E-value=1.8e-08 Score=88.13 Aligned_cols=235 Identities=9% Similarity=-0.015 Sum_probs=140.7
Q ss_pred CceeEEeeccccceEeeeeccc-----cccceeEEEEcCCCCEEEEeeC--CCcEEE--EeCCCceeeeeecCCcCcEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDS-----ILFGATSVDFSVSGRLLFAGYN--DYTINV--WDSLKCCRVNHLMGHENRVSC 73 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~-----~~~~i~~~~~~~~g~~l~tg~~--dg~v~i--wd~~~~~~~~~~~~h~~~V~~ 73 (304)
+++|.+||+.++++...+.... ....-..++|+|||++++.+.. +..+.+ +|+.+ ++.+..- +.
T Consensus 95 ~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~--- 167 (368)
T 1mda_H 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC--- 167 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---
T ss_pred CCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---
Confidence 5789999999999887765430 0122457999999998887754 467888 99876 3333210 11
Q ss_pred EEECCCCC-eEEEEeCCCceEEEEeeeCC----CeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc-
Q psy4754 74 LQVSPDGT-AFSSGSWDTTLRCRLFDLRA----DKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC- 147 (304)
Q Consensus 74 l~~s~d~~-~l~sgs~D~~i~~~~wd~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~- 147 (304)
..+.|+++ .+++.+.|+.+ ...|+.. ...+..........+..... ++++..++..+. +.|.+.|..+..
T Consensus 168 ~~~~p~g~~~~~~~~~dg~~--~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~ 243 (368)
T 1mda_H 168 FHIHPGAAATHYLGSCPASL--AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGA 243 (368)
T ss_dssp CCCEEEETTEEECCCCTTSC--EEEECCSSCCCCEECCCCSCTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCC
T ss_pred eEEccCCCeEEEEEcCCCCE--EEEECccccccCCeEEEEeeeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcc
Confidence 12234443 44455566664 3456554 11111000000000001113 556666666666 899999875422
Q ss_pred -cceecc-------C---cccceeEEEEcCCCcEEEEeec-C--------CceEEEEeeecCCceEEEeecCceeeeeeE
Q psy4754 148 -RVNHLM-------G---HENRVSCLQVSPDGTAFSSGSW-D--------TTLRCRLFDLRADKEVACYKKDSILFGATS 207 (304)
Q Consensus 148 -~~~~~~-------~---h~~~v~~v~~sp~~~~las~s~-d--------~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~ 207 (304)
.+..+. . .......++++||++.+..+.. + ..+ .++|+.+.+.+..+.... .+..
T Consensus 244 ~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~--~ViD~~t~~vv~~i~vg~---~p~g 318 (368)
T 1mda_H 244 TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT--SSVTASVGQTSGPISNGH---DSDA 318 (368)
T ss_dssp EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE--EEEESSSCCEEECCEEEE---EECE
T ss_pred eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE--EEEECCCCeEEEEEECCC---Ccce
Confidence 111110 0 1111222689999987775433 2 233 489999988877765443 4688
Q ss_pred EEEcCCCC-EEEEEe-CCCcEEEEeCCCceeeEEeeccccceEEEEEcc
Q psy4754 208 VDFSVSGR-LLFAGY-NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 208 ~~~s~~g~-~l~sg~-~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp 254 (304)
++|+|||+ .+++.. .+++|.++|..+++.+.++.... ....+++.+
T Consensus 319 i~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 319 IIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp EEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred EEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence 99999998 456666 58999999999999998887654 345666654
No 235
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.00 E-value=1.3e-07 Score=78.62 Aligned_cols=193 Identities=7% Similarity=0.039 Sum_probs=130.5
Q ss_pred eeEEEEcCCCCEEEEeeC--CCcEEEEeCCCceeeeeecCCc-CcEEEEEECCCCCeEEEEeC-CCceEEEEeeeCCCee
Q psy4754 29 ATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHE-NRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKE 104 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~--dg~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~d~~~l~sgs~-D~~i~~~~wd~~~~~~ 104 (304)
...++|++++.++++.+. ++.|++.|+.+++.+..+.... .-...+++. ++.|..+.+ ++. +.++|..+.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~--v~viD~~t~~v 98 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI--GFIYDRRTLSN 98 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE--EEEEETTTTEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE--EEEEECCCCcE
Confidence 468999998776666554 6899999999998887764222 122345554 556666565 445 57899988888
Q ss_pred EeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC--cc---cceeEEEEcCCCcEEEEeecCCc
Q psy4754 105 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--HE---NRVSCLQVSPDGTAFSSGSWDTT 179 (304)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h~---~~v~~v~~sp~~~~las~s~d~~ 179 (304)
+..++.. . .....+++|++.++.+..++.|.++|..+.+.+.++.- +. ..++.+.|. +++.++....++.
T Consensus 99 ~~~i~~g-~---~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 99 IKNFTHQ-M---KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEEECC-S---SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEECC-C---CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence 8776543 0 12345677888888777789999999988766555431 11 236678887 7776666555666
Q ss_pred eEEEEeeecCCceEEEeecCce-----------eeeeeEEEEcCCCCEEEE-EeCCCcEEEEeCC
Q psy4754 180 LRCRLFDLRADKEVACYKKDSI-----------LFGATSVDFSVSGRLLFA-GYNDYTINVWDSL 232 (304)
Q Consensus 180 i~i~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~s~~g~~l~s-g~~d~~i~iwd~~ 232 (304)
| .+.|..+++.+..+..... ....+.++|+|+++.+++ +....++...++.
T Consensus 174 V--~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 174 I--ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp E--EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred E--EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 4 6899999998877754211 013479999999875554 5566777777654
No 236
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.99 E-value=1.7e-07 Score=77.20 Aligned_cols=182 Identities=13% Similarity=0.104 Sum_probs=123.7
Q ss_pred eeEEEEcCCCCEEEEeeCCC--cEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 29 ATSVDFSVSGRLLFAGYNDY--TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
...+.|+ ++.++.+.+.+| .|+.+|+.+++.++.+.... ......+.++++.|....|.... +.++|..+.+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~-v~v~D~~t~~~~~ 121 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL-GFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE-EEEEETTTCCEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE-EEEEECccCcEEE
Confidence 5789998 677778888876 99999999999887765432 33332233346666666664432 5789999888887
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC----cc-cceeEEEEcCCCcEEEEeecCCceE
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG----HE-NRVSCLQVSPDGTAFSSGSWDTTLR 181 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----h~-~~v~~v~~sp~~~~las~s~d~~i~ 181 (304)
.++... ....+.++++.|+....++.|.++|..+.+.+.++.- .. ..++.+.+. +|+.++..-.+..|
T Consensus 122 ti~~~~-----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I- 194 (262)
T 3nol_A 122 SFNYDG-----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKI- 194 (262)
T ss_dssp EEECSS-----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE-
T ss_pred EEECCC-----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeE-
Confidence 776532 2234556777777766688899999888776655432 11 334567776 77766665456654
Q ss_pred EEEeeecCCceEEEeecCce----------eeeeeEEEEcCCCCEEEEEe
Q psy4754 182 CRLFDLRADKEVACYKKDSI----------LFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 182 i~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~s~~g~~l~sg~ 221 (304)
.+.|.++++.+..+..... ..-.+.+|++|+++.|+..+
T Consensus 195 -~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 195 -VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp -EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred -EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 6899999998877754311 11248899999987766665
No 237
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.97 E-value=1.6e-06 Score=73.66 Aligned_cols=225 Identities=11% Similarity=-0.015 Sum_probs=129.9
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
...++|+++|.++++-..++.|..||.... ....+. -......+++.++|+++++.......++..+|..+++.....
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~ 111 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL 111 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEE
Confidence 578999999998888778899999998653 222222 234678899999999766654332322345565555433222
Q ss_pred eccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc-cce---------eccCcccceeEEEEcCCCcEEEEee-cC
Q psy4754 109 KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVN---------HLMGHENRVSCLQVSPDGTAFSSGS-WD 177 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~-~~~---------~~~~h~~~v~~v~~sp~~~~las~s-~d 177 (304)
...... ....+...+++..+++-..++.|.++|..+.. .+. ...+.......+ +|+++.+..+. ..
T Consensus 112 ~~~~~~-~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~ 188 (306)
T 2p4o_A 112 TLPDAI-FLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEK 188 (306)
T ss_dssp ECTTCS-CEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTT
T ss_pred eCCCcc-ccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCC
Confidence 211110 11233344444334443458889998875421 111 001111234555 78886655444 44
Q ss_pred CceEEEEeeecC-Cce--EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceee--EEeeccccceEEEEE
Q psy4754 178 TTLRCRLFDLRA-DKE--VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV--NHLMGHENRVSCLQV 252 (304)
Q Consensus 178 ~~i~i~~~d~~~-~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~--~~~~~h~~~i~~l~~ 252 (304)
+. |..+++.. ++. ...+... .....+++.++|+++++....+.|.++|.. ++.. ..+.......++++|
T Consensus 189 ~~--I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~ 262 (306)
T 2p4o_A 189 ML--LLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAF 262 (306)
T ss_dssp TE--EEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEE
T ss_pred CE--EEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEE
Confidence 55 46777754 221 1111111 124678899999998887778899999965 4432 223333356899999
Q ss_pred c---cCCCEEEEeec
Q psy4754 253 S---PDGTAFSSGSW 264 (304)
Q Consensus 253 s---p~g~~lasgs~ 264 (304)
. |++..|...+.
T Consensus 263 ~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 263 GQTEGDCTAIYVVTN 277 (306)
T ss_dssp CCSTTTTTEEEEEEC
T ss_pred ecccCCCCEEEEECC
Confidence 8 88765554443
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.97 E-value=1.5e-07 Score=80.46 Aligned_cols=218 Identities=14% Similarity=0.113 Sum_probs=136.7
Q ss_pred CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeece
Q psy4754 38 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGA 117 (304)
Q Consensus 38 g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~ 117 (304)
+..+..++.++.+..+|.. ++.......+...+.++...++++.+ .++.++.+ ..+|.. ++....+..... .+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~-vgt~~~~l--~~~d~~-g~~~~~~~~~~~--~~ 179 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIY-VGSNDNYL--YAINPD-GTEKWRFKTNDA--IT 179 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEE-EECTTSEE--EEECTT-SCEEEEEECSSC--CC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEE-EEcCCCEE--EEECCC-CCEeEEEecCCC--ce
Confidence 4456677788999999988 66555554455556667777777644 45666664 578877 665555543221 23
Q ss_pred eeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEee
Q psy4754 118 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK 197 (304)
Q Consensus 118 ~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~ 197 (304)
.++.+.+++. +..++ +.+..+| .+++.+.........+.++...+++..++ ++.++.+ ..+|. +++.+..+.
T Consensus 180 ~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl--~~~~~-~g~~~~~~~ 251 (330)
T 3hxj_A 180 SAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHL--YAINP-DGTEKWRFK 251 (330)
T ss_dssp SCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEE--EEECT-TSCEEEEEE
T ss_pred eeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeE--EEECC-CCCEeEEee
Confidence 4555666666 44444 8899999 55555544444446688888888886555 4556654 35564 344443333
Q ss_pred cCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 198 KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 198 ~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
.... ....+.+.+++. |..++.++.+..+|. +++.+..+......+.++...++|..++ |+.++.+++...+.
T Consensus 252 ~~~~--~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 252 TGKR--IESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKFYALFNLE 324 (330)
T ss_dssp CSSC--CCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC--
T ss_pred CCCC--ccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeEEEEeccc
Confidence 3221 123344555665 456777888999995 6666666655566778888888887654 77889988775433
No 239
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.96 E-value=2.1e-10 Score=100.69 Aligned_cols=183 Identities=15% Similarity=0.065 Sum_probs=100.3
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCccc-
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN- 157 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~- 157 (304)
++..+++++.|+.+ ..||..+++.++.++. . .+.+..+..++..+++++.|+.|+.||..+++.+-....+..
T Consensus 8 ~~~~v~~gs~dg~v--~a~d~~tG~~~W~~~~-~---~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSL--HAVSKRTGSIKWTLKE-D---PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEE--EEEETTTCCEEEEEEC-C---CSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEE--EEEECCCCCEEEEecC-C---CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 47789999999985 6899999998887765 2 122333456676777778999999999887765544332211
Q ss_pred ceeE-EEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 158 RVSC-LQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 158 ~v~~-v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
.+.+ ..+. ++..+++++.|+.+ ..||.++++.+-.+.... ...++|++..+++++.|+.|+.||..+++.
T Consensus 82 ~~~~sp~~~-~~~~v~~g~~dg~v--~a~D~~tG~~~w~~~~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 82 LVQASPCRS-SDGILYMGKKQDIW--YVIDLLTGEKQQTLSSAF------ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp HHTTCSCC------CCCCEEEEEE--EEECCC----------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ccccCceEe-cCCEEEEEeCCCEE--EEEECCCCcEEEEecCCC------cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 1111 0111 34467778888875 689999887754443322 234567888999999999999999998887
Q ss_pred eEEeeccccceEEEEEccCC---CEEEEeecCCeeeeccccccch
Q psy4754 237 VNHLMGHENRVSCLQVSPDG---TAFSSGSWDTTLRDEESKNRYM 278 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g---~~lasgs~D~~i~~~~~~~~~~ 278 (304)
+.++..+. ....+++++. ..+..++.|+.|..||...+..
T Consensus 153 ~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 153 RWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp CCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred EEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 65544221 2233444432 4566788899999998766543
No 240
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.96 E-value=7e-07 Score=78.04 Aligned_cols=258 Identities=9% Similarity=-0.019 Sum_probs=151.2
Q ss_pred CceeEEeeccccceEeeeecccc-------ccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEE
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSI-------LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQ 75 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~-------~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~ 75 (304)
++.|..||..+++++-....... ...+.+ ....++..++.++.++.|..+|..+|+.+-.............
T Consensus 62 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~ 140 (376)
T 3q7m_A 62 AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPV 140 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred CCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCE
Confidence 56799999999987644443211 111222 1122355677788999999999999876644433222111112
Q ss_pred ECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeec---eeeeEEcCCCCEEEEEeCCCeEEEecCCccccceec
Q psy4754 76 VSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG---ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 152 (304)
Q Consensus 76 ~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~---~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 152 (304)
.. +..++.++.++.+ ..+|..+++.+..+........ .....+. +..++.+..++.+..+|..+++.+-+.
T Consensus 141 ~~--~~~v~v~~~~g~l--~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~ 214 (376)
T 3q7m_A 141 VS--DGLVLIHTSNGQL--QALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQ 214 (376)
T ss_dssp EE--TTEEEEECTTSEE--EEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEE
T ss_pred EE--CCEEEEEcCCCeE--EEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 22 3467777778874 6789888888776654322110 0111222 456788888999999998877654333
Q ss_pred cCcc--cc--ee---EEEEcC--CCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC
Q psy4754 153 MGHE--NR--VS---CLQVSP--DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 153 ~~h~--~~--v~---~v~~sp--~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d 223 (304)
.... .. +. .+...| .+..+..++.++.+ ..+|.++++.+-...... ...+. .++..+..++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l--~~~d~~tG~~~w~~~~~~----~~~~~--~~~~~l~~~~~~ 286 (376)
T 3q7m_A 215 RISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNL--TALDLRSGQIMWKRELGS----VNDFI--VDGNRIYLVDQN 286 (376)
T ss_dssp ECCC-----------CCCCCCEEETTEEEEECTTSCE--EEEETTTCCEEEEECCCC----EEEEE--EETTEEEEEETT
T ss_pred ecccCCCCcccccccccCCCcEEECCEEEEEecCcEE--EEEECCCCcEEeeccCCC----CCCce--EECCEEEEEcCC
Confidence 2110 00 00 011111 23456666677775 578888877654333221 12222 246677778889
Q ss_pred CcEEEEeCCCceeeEEeec-cccceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 224 YTINVWDSLKCCRVNHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 224 ~~i~iwd~~~~~~~~~~~~-h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+.+..+|..+++.+..... ....+....+ .+..|..++.++.+..++...+.
T Consensus 287 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 287 DRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp CCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred CeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 9999999999987766542 2222333333 24677788889999999876654
No 241
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.91 E-value=2e-06 Score=75.08 Aligned_cols=250 Identities=9% Similarity=-0.079 Sum_probs=148.1
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcE-----EEEEEC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV-----SCLQVS 77 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V-----~~l~~s 77 (304)
++.|..+|..+++++-......... ...... +..++.++.++.+..+|..+|+.+-......... ......
T Consensus 112 ~g~l~a~d~~tG~~~W~~~~~~~~~--~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 187 (376)
T 3q7m_A 112 KAQVYALNTSDGTVAWQTKVAGEAL--SRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA 187 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCC--SCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCceE--cCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE
Confidence 5679999999998764444332111 111221 4467778899999999999987665443321110 111222
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeec--------e-eeeEEcCCCCEEEEEeCCCeEEEecCCcccc
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG--------A-TSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 148 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~--------~-~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~ 148 (304)
+..++.++.++.+ ..+|..+++.+........... + ....+ .+..++.++.++.+..+|..+++.
T Consensus 188 --~~~v~~g~~~g~l--~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~ 261 (376)
T 3q7m_A 188 --FGAAVVGGDNGRV--SAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQI 261 (376)
T ss_dssp --TTEEEECCTTTEE--EEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCE
T ss_pred --CCEEEEEcCCCEE--EEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcE
Confidence 3467777778774 6788888887766543211000 0 01111 256788888899999999888765
Q ss_pred ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEE
Q psy4754 149 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINV 228 (304)
Q Consensus 149 ~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~i 228 (304)
+-.... .....+.. ++..+..++.++.+ ..+|..+++.+-....... ........ .+..|..++.++.+..
T Consensus 262 ~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l--~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~~g~l~~ 332 (376)
T 3q7m_A 262 MWKREL--GSVNDFIV--DGNRIYLVDQNDRV--MALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDSEGYLHW 332 (376)
T ss_dssp EEEECC--CCEEEEEE--ETTEEEEEETTCCE--EEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECTTSEEEE
T ss_pred EeeccC--CCCCCceE--ECCEEEEEcCCCeE--EEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeCCCeEEE
Confidence 543321 22334444 34466666777775 5789888876543331110 00111111 3567888888999999
Q ss_pred EeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 229 WDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 229 wd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
+|..+++.+.........+.+..... +..|..++.|+.|..++
T Consensus 333 ~d~~tG~~~~~~~~~~~~~~~~~~~~-~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 333 INVEDGRFVAQQKVDSSGFQTEPVAA-DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EETTTCCEEEEEECCTTCBCSCCEEE-TTEEEEEBTTSCEEEEE
T ss_pred EECCCCcEEEEEecCCCcceeCCEEE-CCEEEEEeCCCEEEEEe
Confidence 99999988877665333433221222 45667778888887764
No 242
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.90 E-value=3.6e-07 Score=75.25 Aligned_cols=179 Identities=9% Similarity=0.035 Sum_probs=120.9
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEE--EEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVS--CLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~--~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
...+.|+ ++.++.+.+.+|.|+++|+.+++.++.+ -. .... .+++ +++.|....|.... +.++|..+.+.+.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~--~g~~Ly~ltw~~~~-v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLAS--DGERLYQLTWTEGL-LFTWSGMPPQRER 130 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEE--CSSCEEEEESSSCE-EEEEETTTTEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEE--eCCEEEEEEccCCE-EEEEECCcCcEEE
Confidence 4678887 4677789999999999999999888776 22 2332 3555 45555555554333 5899999988888
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC--cc---cceeEEEEcCCCcEEEEeecCCceE
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--HE---NRVSCLQVSPDGTAFSSGSWDTTLR 181 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h~---~~v~~v~~sp~~~~las~s~d~~i~ 181 (304)
.++.... ...+.++++.|+....++.|.++|..+.+.+.++.- +. ..++.+.+. +|+.++..-.+..|
T Consensus 131 ti~~~~e-----GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I- 203 (268)
T 3nok_A 131 TTRYSGE-----GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDV- 203 (268)
T ss_dssp EEECSSC-----CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEE-
T ss_pred EEeCCCc-----eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeE-
Confidence 7765322 234456788888877799999999888776655432 22 234667776 77767665455554
Q ss_pred EEEeeecCCceEEEeecCce-----------eeeeeEEEEcCCCCEEEEEe
Q psy4754 182 CRLFDLRADKEVACYKKDSI-----------LFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 182 i~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~s~~g~~l~sg~ 221 (304)
.+.|.++++.+..+..... ..-.+.+|++|+++.|+..+
T Consensus 204 -~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 -LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp -EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred -EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 6899999988777753311 01247899999866544443
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.90 E-value=9.4e-07 Score=75.63 Aligned_cols=236 Identities=10% Similarity=0.045 Sum_probs=141.3
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec--------------------CCcCcEEEEEECC-CCCeEEEEe
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM--------------------GHENRVSCLQVSP-DGTAFSSGS 87 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~--------------------~h~~~V~~l~~s~-d~~~l~sgs 87 (304)
..++++.++|.+++++..++.|..|+..++... .+. ........+++.+ +++++++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 467899999997778888999999998765322 111 0113578899997 666555433
Q ss_pred CCCceEEEEeeeCCCeeEeEEec--c-ceeeceeeeEEcC-CCCEEEEEeC-----------------CCeEEEecCCcc
Q psy4754 88 WDTTLRCRLFDLRADKEVACYKK--D-SILFGATSVDFSV-SGRLLFAGYN-----------------DYTINVWDSLKC 146 (304)
Q Consensus 88 ~D~~i~~~~wd~~~~~~~~~~~~--~-~~~~~~~~~~~s~-~~~~l~sg~~-----------------dg~i~iwd~~~~ 146 (304)
...+ ..+|...+. +..+.. . ........+++.+ ++...++-.. ++.|..||..+.
T Consensus 100 -~~~i--~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 100 -YYHL--SVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp -TTEE--EEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred -CCCE--EEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 3333 456655332 222211 1 1111246788899 8876665322 367888886544
Q ss_pred ccceeccCcccceeEEEEcCCCcEEEEe-ecCCceEEEEeeecCCc--eEEEeecCceeeeeeEEEEcCCCCEEEEEeC-
Q psy4754 147 CRVNHLMGHENRVSCLQVSPDGTAFSSG-SWDTTLRCRLFDLRADK--EVACYKKDSILFGATSVDFSVSGRLLFAGYN- 222 (304)
Q Consensus 147 ~~~~~~~~h~~~v~~v~~sp~~~~las~-s~d~~i~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~- 222 (304)
+. ..+.........++++|+++.+..+ +..+.| +.+++.... ....+... .. ...+++.++|++.++...
T Consensus 176 ~~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I--~~~~~~~~~~~~~~~~~~~--~g-P~gi~~d~~G~l~va~~~~ 249 (322)
T 2fp8_A 176 ET-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQI--VKYWLEGPKKGTAEVLVKI--PN-PGNIKRNADGHFWVSSSEE 249 (322)
T ss_dssp EE-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEE--EEEESSSTTTTCEEEEEEC--SS-EEEEEECTTSCEEEEEEEE
T ss_pred EE-EEeccCCccCcceEECCCCCEEEEEeCCCCeE--EEEECCCCcCCccceEEeC--CC-CCCeEECCCCCEEEEecCc
Confidence 32 1111112345789999999865544 445554 577776421 11222111 11 567899999998877654
Q ss_pred ---------CCcEEEEeCCCceeeEEeeccc----cceEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 223 ---------DYTINVWDSLKCCRVNHLMGHE----NRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 223 ---------d~~i~iwd~~~~~~~~~~~~h~----~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
.+.|..+|. .++.+..+.... ..+.++++ .+++.+++......|..+++...+
T Consensus 250 ~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp TTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred ccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence 456888886 466666665432 45777777 577888888788889888876555
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.89 E-value=1.6e-07 Score=85.86 Aligned_cols=192 Identities=13% Similarity=0.020 Sum_probs=126.8
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEE-c-CCCCEEEEEe------------------CCCeE
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF-S-VSGRLLFAGY------------------NDYTI 138 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~-s-~~~~~l~sg~------------------~dg~i 138 (304)
||++|.....+.. ++.+.|+.+.+....++... ......+++ + |++++++.++ .++.+
T Consensus 100 DG~~lfVnd~~~~-rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANT-RVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEETTTT-EEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcCCCC-EEEEEECCCceEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 7887777666554 25788998887766443211 113456666 5 8999998884 35689
Q ss_pred EEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCc---------------e---------------------EE
Q psy4754 139 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---------------L---------------------RC 182 (304)
Q Consensus 139 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---------------i---------------------~i 182 (304)
.++|..+.+...++.--. ....++++|||+++++.+.+.. + .+
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999988877666543211 3566889999999888875541 1 12
Q ss_pred EEeeecC--Cce-EEEeecCceeeeeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCce------------eeEEeeccccc
Q psy4754 183 RLFDLRA--DKE-VACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCC------------RVNHLMGHENR 246 (304)
Q Consensus 183 ~~~d~~~--~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd~~~~~------------~~~~~~~h~~~ 246 (304)
.+.|.++ .+. +..+... ....++.++|||+++++++ .+.+|.++|..+.+ .+.+.. -...
T Consensus 257 ~VID~~~~~~~~~~~~Ipvg---~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~g 332 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLG 332 (595)
T ss_dssp EEEECSGGGCCSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSC
T ss_pred EEEeCcccCCceeEEEEecC---CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCC
Confidence 3445544 222 2222211 1346789999999877754 56889999988642 223332 2245
Q ss_pred eEEEEEccCCCEEEEeecCCeeeeccccccc
Q psy4754 247 VSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 247 i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~ 277 (304)
...++|+|+|..+++.-.|.+|..|+++...
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~ 363 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAI 363 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEHHHHH
T ss_pred cceEEECCCCeEEEEEecCCcEEEEEhhHhh
Confidence 7889999999667778889999999987743
No 245
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.88 E-value=3e-07 Score=86.70 Aligned_cols=240 Identities=16% Similarity=0.134 Sum_probs=132.9
Q ss_pred EEEEcC-CCCEEEEeeCCC-----------cEEEEeCCCcee--eeee-cCCcCcEEEEEECCCCCeEEEEeCCCceEEE
Q psy4754 31 SVDFSV-SGRLLFAGYNDY-----------TINVWDSLKCCR--VNHL-MGHENRVSCLQVSPDGTAFSSGSWDTTLRCR 95 (304)
Q Consensus 31 ~~~~~~-~g~~l~tg~~dg-----------~v~iwd~~~~~~--~~~~-~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~ 95 (304)
++++.+ ++++++.|+.+. .+.+||+.+++- +..+ ..+.....++++..++++++.|+.+.. .++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~-~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK-KTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT-CEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCC-ceE
Confidence 456667 888988887653 588999887642 2222 123334445778899999999996543 368
Q ss_pred EeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEe-CC-----CeEEEecCCccc--cce-----eccCcccceeEE
Q psy4754 96 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY-ND-----YTINVWDSLKCC--RVN-----HLMGHENRVSCL 162 (304)
Q Consensus 96 ~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~-~d-----g~i~iwd~~~~~--~~~-----~~~~h~~~v~~v 162 (304)
+||..+.+-.......... .-.++.+.++++.++.|+ .+ ..+.+||..+.+ .+. .+..... ..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~---~~ 344 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK---QG 344 (656)
T ss_dssp EEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT---TG
T ss_pred EecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc---cc
Confidence 8998765432211111111 112445556888888887 34 578999976543 110 0000000 01
Q ss_pred EEcCCCcEEEEeecCCce-------EEEEeeecCCceEEEeecCce-------eeeeeEEEEc-CCCCEEEEEeCCC---
Q psy4754 163 QVSPDGTAFSSGSWDTTL-------RCRLFDLRADKEVACYKKDSI-------LFGATSVDFS-VSGRLLFAGYNDY--- 224 (304)
Q Consensus 163 ~~sp~~~~las~s~d~~i-------~i~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~s-~~g~~l~sg~~d~--- 224 (304)
.+..++..++.++.++.+ .+..||..+............ .....++.|. .++++++.|+.++
T Consensus 345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 123455555666555432 235677766543322211110 0012344443 4788888887432
Q ss_pred --------cEEEEeCCCceeeEEe--eccccce-EEEEEccCCCEEEEeecC-----------Ceeeeccccc
Q psy4754 225 --------TINVWDSLKCCRVNHL--MGHENRV-SCLQVSPDGTAFSSGSWD-----------TTLRDEESKN 275 (304)
Q Consensus 225 --------~i~iwd~~~~~~~~~~--~~h~~~i-~~l~~sp~g~~lasgs~D-----------~~i~~~~~~~ 275 (304)
.|.+||..+..-.... ..+..+. .+.+..|+|+.++.|+.+ ..+.+||+..
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 6778887664322211 1123332 445677899999999865 3466777644
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.88 E-value=7.7e-07 Score=73.25 Aligned_cols=192 Identities=11% Similarity=0.088 Sum_probs=126.0
Q ss_pred eeeeecCCcC--cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-eCCC
Q psy4754 60 RVNHLMGHEN--RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDY 136 (304)
Q Consensus 60 ~~~~~~~h~~--~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-~~dg 136 (304)
.++.+ .|.. -.+.|.|+ ++.++.|.+.++.-.++.+|+.+++.+.........++ -.++ ++++.++.. ..++
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~Fg-eGit--~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFG-EGIS--DWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCE-EEEE--EETTEEEEEESSSS
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccce-eEEE--EeCCEEEEEEeeCC
Confidence 34444 3543 35789998 67778888887744468899999988877665433222 1233 345555554 4589
Q ss_pred eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC---ceeeeeeEEEEcCC
Q psy4754 137 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD---SILFGATSVDFSVS 213 (304)
Q Consensus 137 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~s~~ 213 (304)
.+.+||..+.+.+.++.-- ..=..+ ++|++.++.+..++. ++++|..+.+.+..+... ......+.+.+. +
T Consensus 108 ~v~v~D~~t~~~~~ti~~~-~eG~gl--t~dg~~L~~SdGs~~--i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~ 181 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYD-GEGWGL--THNDQYLIMSDGTPV--LRFLDPESLTPVRTITVTAHGEELPELNELEWV-D 181 (262)
T ss_dssp EEEEEETTTCCEEEEEECS-SCCCCE--EECSSCEEECCSSSE--EEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEEEEECccCcEEEEEECC-CCceEE--ecCCCEEEEECCCCe--EEEEcCCCCeEEEEEEeccCCccccccceeEEE-C
Confidence 9999999988877766432 222334 356666665544454 468999888776665432 111234556775 7
Q ss_pred CCEEEEEeCCCcEEEEeCCCceeeEEeecc------------ccceEEEEEccCCC-EEEEe
Q psy4754 214 GRLLFAGYNDYTINVWDSLKCCRVNHLMGH------------ENRVSCLQVSPDGT-AFSSG 262 (304)
Q Consensus 214 g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h------------~~~i~~l~~sp~g~-~lasg 262 (304)
|+..+....+..|.+.|..+++.+..+.-. ..-.+.|||+|++. .++||
T Consensus 182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 877777767889999999999988877542 12458899999765 45555
No 247
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.86 E-value=1.9e-07 Score=88.09 Aligned_cols=277 Identities=12% Similarity=0.078 Sum_probs=146.5
Q ss_pred eeEEeeccccceE--eeeeccccccceeEEEEcCCCCEEEEeeC-CCcEEEEeCCCceee--eeecCCcCcEEEEEECCC
Q psy4754 5 HCRLFDLRADKEV--ACYKKDSILFGATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCRV--NHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 5 ~v~~wd~~~~~~~--~~~~~~~~~~~i~~~~~~~~g~~l~tg~~-dg~v~iwd~~~~~~~--~~~~~h~~~V~~l~~s~d 79 (304)
.+.+||+.+++-. ...+.. +.....++++.++|++++.|+. +..+.+||+.+++-. ..+..... -.++++.++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~-~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~-~~s~~~~~d 297 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTK-HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG-YQSSATMSD 297 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECS-CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS-SCEEEECTT
T ss_pred EEEEEeCCCCcEEeCcccCCC-CCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccc-ccceEEecC
Confidence 5889999998532 222211 1112456778899999999984 568999998776422 22211111 124556678
Q ss_pred CCeEEEEe-CCCc---eEEEEeeeCCCeeEeEEec--cceeeceeeeEEcCCCCEEEEEeCC---------CeEEEecCC
Q psy4754 80 GTAFSSGS-WDTT---LRCRLFDLRADKEVACYKK--DSILFGATSVDFSVSGRLLFAGYND---------YTINVWDSL 144 (304)
Q Consensus 80 ~~~l~sgs-~D~~---i~~~~wd~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~sg~~d---------g~i~iwd~~ 144 (304)
++.++.|+ .++. -.+.+||..+.+-...... ......-....+..++..++.|+.+ ..+..||..
T Consensus 298 g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 298 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred CeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 99999888 4421 1246788876542211000 0000000011223445554555444 456778766
Q ss_pred ccccceeccCcc---------cceeEEEEc-CCCcEEEEeecCCc---------eEEEEeeecCCceEEEe--ecCceee
Q psy4754 145 KCCRVNHLMGHE---------NRVSCLQVS-PDGTAFSSGSWDTT---------LRCRLFDLRADKEVACY--KKDSILF 203 (304)
Q Consensus 145 ~~~~~~~~~~h~---------~~v~~v~~s-p~~~~las~s~d~~---------i~i~~~d~~~~~~~~~~--~~~~~~~ 203 (304)
+..-......+. ..-.++.|. .++++++.|+.+.. ..+.+||..+.+..... ..... -
T Consensus 378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~-R 456 (656)
T 1k3i_A 378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA-R 456 (656)
T ss_dssp TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC-C
T ss_pred CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCC-c
Confidence 543222111111 122344443 37888888885420 12467787665543322 10100 0
Q ss_pred eeeEEEEcCCCCEEEEEeCC-----------CcEEEEeCCCce--eeEEeeccccceEEEEEccCCCEEEEeecC---Ce
Q psy4754 204 GATSVDFSVSGRLLFAGYND-----------YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWD---TT 267 (304)
Q Consensus 204 ~~~~~~~s~~g~~l~sg~~d-----------~~i~iwd~~~~~--~~~~~~~h~~~i~~l~~sp~g~~lasgs~D---~~ 267 (304)
.-.+.+..|++++++.|+.+ ..+.+||..+.+ .+..+........+..+.|||+.++.|+.. ..
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~~~ 536 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCT 536 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCS
T ss_pred ccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCCCC
Confidence 11345677899999998754 468999986643 222222222233455677999999999852 23
Q ss_pred eeeccccccchhheeec
Q psy4754 268 LRDEESKNRYMQYLLRS 284 (304)
Q Consensus 268 i~~~~~~~~~~~~~~~~ 284 (304)
+..++.+.=..+|+++.
T Consensus 537 ~~~~~~e~~~Ppyl~~~ 553 (656)
T 1k3i_A 537 TNHFDAQIFTPNYLYNS 553 (656)
T ss_dssp CCCCEEEEEECGGGBCT
T ss_pred CCeeEEEEEeChhhccC
Confidence 44444444445566543
No 248
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.85 E-value=3.6e-07 Score=78.00 Aligned_cols=244 Identities=13% Similarity=0.074 Sum_probs=144.6
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
++.+..|| .+++.+.. .......+.++...++|.+++ ++.+ +..+|. +++.+..+...........+. +..
T Consensus 39 ~~~l~~~d-~~g~~~~~--~~~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~ 109 (330)
T 3hxj_A 39 NKNLYAIN-TDGSVKWF--FKSGEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDI 109 (330)
T ss_dssp TTTTEEEC-TTSCEEES--SCGGGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTE
T ss_pred CCEEEEEC-CCCcEEEE--EecCCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCE
Confidence 45688889 77776433 222222356777777776554 4444 888886 565544443333222233333 445
Q ss_pred EEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEE
Q psy4754 83 FSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCL 162 (304)
Q Consensus 83 l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v 162 (304)
|..++.++.+ ..+|.. ++.......... .+.++...+++. ++.++.++.+..+|.. ++.+..+......+.++
T Consensus 110 l~v~t~~~~l--~~~d~~-g~~~~~~~~~~~--~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 110 LYVTSMDGHL--YAINTD-GTEKWRFKTKKA--IYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp EEEECTTSEE--EEECTT-SCEEEEEECSSC--CCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred EEEEecCCEE--EEEcCC-CCEEEEEcCCCc--eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence 6667777764 567776 555554443221 233455566665 6667788999999987 55444444444567777
Q ss_pred EEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec
Q psy4754 163 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG 242 (304)
Q Consensus 163 ~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 242 (304)
.+.+++..++.. +.+ ..+| .+++....+.... ..+.++...++|.+.+ ++.++.+..+|. ++..+..+..
T Consensus 183 ~~d~~g~l~v~t---~~l--~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~g~l~v-~t~~~gl~~~~~-~g~~~~~~~~ 252 (330)
T 3hxj_A 183 SIGKDGTIYFGS---DKV--YAIN-PDGTEKWNFYAGY--WTVTRPAISEDGTIYV-TSLDGHLYAINP-DGTEKWRFKT 252 (330)
T ss_dssp EECTTCCEEEES---SSE--EEEC-TTSCEEEEECCSS--CCCSCCEECTTSCEEE-EETTTEEEEECT-TSCEEEEEEC
T ss_pred EEcCCCEEEEEe---CEE--EEEC-CCCcEEEEEccCC--cceeceEECCCCeEEE-EcCCCeEEEECC-CCCEeEEeeC
Confidence 888888766654 443 5778 5555544433222 2346677788876554 556778888874 5556666655
Q ss_pred cccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 243 HENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 243 h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
....+.++.+.+++. |..++.++.|..++.
T Consensus 253 ~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 253 GKRIESSPVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp SSCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred CCCccccceEcCCCe-EEEecCCCCEEEECC
Confidence 555555667766665 445667777777775
No 249
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.77 E-value=4.9e-06 Score=67.81 Aligned_cols=181 Identities=11% Similarity=0.041 Sum_probs=120.1
Q ss_pred eeEEEEcCCCCEEEEeeCCC--cEEEEeCCCceeeeeecCCcCcE-EEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDY--TINVWDSLKCCRVNHLMGHENRV-SCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEV 105 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg--~v~iwd~~~~~~~~~~~~h~~~V-~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~ 105 (304)
...+.|+. +.++.+.+.+| .|+.+|+.+++.++.+....... ..+++ +++.|....|.... +.++|..+.+.+
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~~-v~v~D~~tl~~~ 98 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNHE-GFVYDLATLTPR 98 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSE-EEEEETTTTEEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCCE-EEEEECCcCcEE
Confidence 67899986 56777777764 99999999998887765332221 23444 35556555553332 578999998888
Q ss_pred eEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC--cc---cceeEEEEcCCCcEEEEeecCCce
Q psy4754 106 ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG--HE---NRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 106 ~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--h~---~~v~~v~~sp~~~~las~s~d~~i 180 (304)
..++... ....+.++++.|+....++.|.++|..+.+.+.++.- +. ..++.+.+. +|+.++..-.+..
T Consensus 99 ~ti~~~~-----~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~- 171 (243)
T 3mbr_X 99 ARFRYPG-----EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSR- 171 (243)
T ss_dssp EEEECSS-----CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTE-
T ss_pred EEEeCCC-----CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCe-
Confidence 8776532 2344456777777777789999999888776555432 22 234566665 7776665544555
Q ss_pred EEEEeeecCCceEEEeecCce-----------eeeeeEEEEcCCCCEEEEEe
Q psy4754 181 RCRLFDLRADKEVACYKKDSI-----------LFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 181 ~i~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~s~~g~~l~sg~ 221 (304)
|.+.|.++++.+..+..... ..-.+.++++|+++.|+..+
T Consensus 172 -I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 172 -IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp -EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred -EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 46899999998877653311 11247899999877666554
No 250
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=9.2e-06 Score=72.57 Aligned_cols=236 Identities=10% Similarity=0.021 Sum_probs=134.1
Q ss_pred eeEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeC-CCce--EEEEeeeCCCee
Q psy4754 29 ATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTL--RCRLFDLRADKE 104 (304)
Q Consensus 29 i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~-D~~i--~~~~wd~~~~~~ 104 (304)
...++++| ++..|+.+...+.|+.+|+..+.... +.........++|.++++.|+.+.. ++.+ .+...+ ..+..
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~ 216 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGF 216 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTS
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCce
Confidence 47899998 34555555444899999997765333 3334455778999999995554433 2221 122222 22211
Q ss_pred E--eEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceec-cCcccceeEEEEcCCCcEEEEe-ecCCc
Q psy4754 105 V--ACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENRVSCLQVSPDGTAFSSG-SWDTT 179 (304)
Q Consensus 105 ~--~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~-s~d~~ 179 (304)
. ..+.. ......++++| ++..+++-...+.|..++.......... .+.......++|+|+++++..+ ...+.
T Consensus 217 ~~~~~l~~---~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 217 KVITELTK---GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp CSEEEEEE---CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred eeeeeecc---CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 1 11111 12346788999 5665555556789999997654321111 1112356789999999955444 44555
Q ss_pred eEEEEeeecCC--ce--EEEeecC-------------ceeeeee-EEEEc--------CCCCEEEEEeCCCcEEEEeCCC
Q psy4754 180 LRCRLFDLRAD--KE--VACYKKD-------------SILFGAT-SVDFS--------VSGRLLFAGYNDYTINVWDSLK 233 (304)
Q Consensus 180 i~i~~~d~~~~--~~--~~~~~~~-------------~~~~~~~-~~~~s--------~~g~~l~sg~~d~~i~iwd~~~ 233 (304)
| +.++.... +. ...+... ....... .++.. ++|.++++=...+.|+.++. .
T Consensus 294 I--~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~ 370 (430)
T 3tc9_A 294 I--LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-Q 370 (430)
T ss_dssp E--EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-T
T ss_pred E--EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-C
Confidence 4 45655431 11 1111110 0011223 44443 45777777666778999983 4
Q ss_pred ceeeEEeecc------------------ccceEEEEEcc-CCCEEEEeecCCeeeeccc
Q psy4754 234 CCRVNHLMGH------------------ENRVSCLQVSP-DGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 234 ~~~~~~~~~h------------------~~~i~~l~~sp-~g~~lasgs~D~~i~~~~~ 273 (304)
+. +.++.+. -.....|+++| ++.++++-.....||-.++
T Consensus 371 G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 371 GR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp SE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred Cc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 43 3333322 12578999999 5788888777788887664
No 251
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.72 E-value=7e-05 Score=61.99 Aligned_cols=227 Identities=9% Similarity=-0.009 Sum_probs=126.1
Q ss_pred CEEEEeeCCCcEEEEeCCCceee-----eeecCCcCcEEEEEECCCCCeEE-EEeCCCceEEEEeeeCCCeeEeEEeccc
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRV-----NHLMGHENRVSCLQVSPDGTAFS-SGSWDTTLRCRLFDLRADKEVACYKKDS 112 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~-----~~~~~h~~~V~~l~~s~d~~~l~-sgs~D~~i~~~~wd~~~~~~~~~~~~~~ 112 (304)
++|+.+.. +.|+.+++...... ..+.........++|.++++.|+ +....+.| ..++............
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I--~~~~~~g~~~~~~~~~-- 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSI--GRASLHGGEPTTIIRQ-- 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEE--EEEESSSCCCEEEECT--
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEE--EEEecCCCCcEEEEEC--
Confidence 44444433 47888887644321 11111224567899999765554 44445554 5677765433222221
Q ss_pred eeeceeeeEEcCCCCEEEEEe-CCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecC---CceEEEEeeec
Q psy4754 113 ILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD---TTLRCRLFDLR 188 (304)
Q Consensus 113 ~~~~~~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d---~~i~i~~~d~~ 188 (304)
.......+++++++..++.+. ..+.|.+++...................++++|++..+..+... +. |..++..
T Consensus 77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~--I~~~~~d 154 (267)
T 1npe_A 77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPK--IETSHMD 154 (267)
T ss_dssp TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCE--EEEEETT
T ss_pred CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcE--EEEEecC
Confidence 112356788998776666654 46789998875432111111122457899999965544433332 34 3456654
Q ss_pred CCceEEEeecCceeeeeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCe
Q psy4754 189 ADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
.... ..+.... ......++++|++..| ++-...+.|.++|.........+.+ ......+++. ++..+++....+.
T Consensus 155 g~~~-~~~~~~~-~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~ 230 (267)
T 1npe_A 155 GTNR-RILAQDN-LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNS 230 (267)
T ss_dssp SCCC-EEEECTT-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTE
T ss_pred CCCc-EEEEECC-CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCe
Confidence 3222 2221111 1246789999987655 5555567899999875433332332 2334567665 4556666656688
Q ss_pred eeecccccc
Q psy4754 268 LRDEESKNR 276 (304)
Q Consensus 268 i~~~~~~~~ 276 (304)
|...+...+
T Consensus 231 v~~~d~~~g 239 (267)
T 1npe_A 231 VIAMDLAIS 239 (267)
T ss_dssp EEEEETTTT
T ss_pred EEEEeCCCC
Confidence 888876543
No 252
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.62 E-value=0.00015 Score=61.90 Aligned_cols=229 Identities=10% Similarity=0.025 Sum_probs=131.1
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCC---ceeeee-ecCCcCcEEEEEEC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLK---CCRVNH-LMGHENRVSCLQVS 77 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~---~~~~~~-~~~h~~~V~~l~~s 77 (304)
...|+..|+.+.+...... ......+++|.+.+ .++++-...+.|..+++.. +..... +...-.....+++.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~---~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd 85 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 85 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred CCeEEEEECCCcceEehhc---CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEe
Confidence 4568999998876443322 12346889999865 5666767779999999875 122222 22222345688887
Q ss_pred CCC-CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC--CeEEEecCCccccceec-c
Q psy4754 78 PDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND--YTINVWDSLKCCRVNHL-M 153 (304)
Q Consensus 78 ~d~-~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d--g~i~iwd~~~~~~~~~~-~ 153 (304)
+.+ +++++-...+.| .+.|+............ ......+++.|.+..++..... +.|...++.... ...+ .
T Consensus 86 ~~~~~ly~~d~~~~~I--~~~~~~g~~~~~~~~~~--~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~ 160 (316)
T 1ijq_A 86 WIHSNIYWTDSVLGTV--SVADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT 160 (316)
T ss_dssp TTTTEEEEEETTTTEE--EEEETTSSSEEEEEECT--TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC
T ss_pred ecCCeEEEEECCCCEE--EEEeCCCCceEEEEECC--CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEE
Confidence 644 455555555664 56776543322222211 1234678899877777666543 688888764322 2222 1
Q ss_pred CcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 154 GHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 154 ~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
..-.....|+++|++..+..+. ..+. |..+|+.................+..+++. .+.++++-...+.|..++..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~--I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHS--ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTE--EEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCe--EEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCC
Confidence 2234678999998766555443 4445 457777643322222211111234566774 46677777777889999877
Q ss_pred CceeeEEeec
Q psy4754 233 KCCRVNHLMG 242 (304)
Q Consensus 233 ~~~~~~~~~~ 242 (304)
+++.+..+..
T Consensus 238 ~g~~~~~i~~ 247 (316)
T 1ijq_A 238 TGSDVNLLAE 247 (316)
T ss_dssp TCCCCEEEEC
T ss_pred CCcceEEEec
Confidence 7766655543
No 253
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.62 E-value=1.5e-05 Score=71.26 Aligned_cols=235 Identities=12% Similarity=0.068 Sum_probs=136.8
Q ss_pred eeEEEEcCC---CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCC---CceEEEEeeeCCC
Q psy4754 29 ATSVDFSVS---GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD---TTLRCRLFDLRAD 102 (304)
Q Consensus 29 i~~~~~~~~---g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D---~~i~~~~wd~~~~ 102 (304)
-..++|.|+ +.++++ ...+.|+.+|+.++.... +.........+++.++|+++++.... ..- +...+....
T Consensus 141 P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~g-v~~~~~~~~ 217 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTG-IYLFTRASG 217 (433)
T ss_dssp CCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEE-EEEECGGGT
T ss_pred CceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccce-EEEEECCCC
Confidence 568999984 555444 333899999997776543 33344567899999999966554321 111 112222111
Q ss_pred ee-EeEEeccceeeceeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceecc--CcccceeEEEEcCCCcEEEEee-cC
Q psy4754 103 KE-VACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLM--GHENRVSCLQVSPDGTAFSSGS-WD 177 (304)
Q Consensus 103 ~~-~~~~~~~~~~~~~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~~sp~~~~las~s-~d 177 (304)
.. ..... .......+++++ ++...++-..++.|+.+|..++.....+. +.......++|+|+++.|..+. ..
T Consensus 218 ~~~~~~~~---~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 218 FTERLSLC---NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp TCCEEEEE---ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred eecccccc---ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 10 01111 112245688899 55544454567889999976544312221 1112234699999998555444 44
Q ss_pred CceEEEEeeec--CCce--EEEeecC-------------ceeeeeeEEEE---------cCCCCEEEEEeCCCcEEEEeC
Q psy4754 178 TTLRCRLFDLR--ADKE--VACYKKD-------------SILFGATSVDF---------SVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 178 ~~i~i~~~d~~--~~~~--~~~~~~~-------------~~~~~~~~~~~---------s~~g~~l~sg~~d~~i~iwd~ 231 (304)
+.| +.++.. +... ...+... ........+++ .++|.++++-...+.|+.++.
T Consensus 295 ~~I--~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 295 HCI--YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TEE--EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CEE--EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 554 565543 2211 0111110 01123567888 788888888777788999985
Q ss_pred CCceeeEEeecc------------------ccceEEEEEc-cCCCEEEEeecCCeeeeccc
Q psy4754 232 LKCCRVNHLMGH------------------ENRVSCLQVS-PDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 232 ~~~~~~~~~~~h------------------~~~i~~l~~s-p~g~~lasgs~D~~i~~~~~ 273 (304)
++ .+.++.+. -.....|+++ ++|..+++-+....||..++
T Consensus 373 -~G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 373 -EG-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp -TS-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred -CC-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 44 34444332 1247889999 78888888888888887765
No 254
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.62 E-value=0.00024 Score=62.75 Aligned_cols=239 Identities=9% Similarity=-0.013 Sum_probs=137.1
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCc----eeeeeecCCcCcEEEEEECC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKC----CRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~----~~~~~~~~h~~~V~~l~~s~ 78 (304)
..|+..++.+........ ....+.+++|++.+ .++.+-...+.|+.+++... .....+.........+++.+
T Consensus 92 ~~I~~i~l~~~~~~~~~~---~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~ 168 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 168 (400)
T ss_dssp TEEEEECTTSCSCEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEET
T ss_pred ceeEEEccCCcceeEecc---ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEe
Confidence 467777777664332221 12347899999854 45556667788999998652 12222222335567888887
Q ss_pred C-CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC--CCeEEEecCCccccceeccCc
Q psy4754 79 D-GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGH 155 (304)
Q Consensus 79 d-~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h 155 (304)
. ++++++-...+. |.+.++........... .......+++.|.+.+++.... .+.|...++............
T Consensus 169 ~~~~lY~~d~~~~~--I~~~~~~g~~~~~l~~~--~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~ 244 (400)
T 3p5b_L 169 IHSNIYWTDSVLGT--VSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 244 (400)
T ss_dssp TTTEEEEEETTTTE--EEEECTTTCSEEEEEEC--SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS
T ss_pred cCCceEEEECCCCe--EEEEeCCCCceEEEEeC--CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC
Confidence 4 445555555555 35677664433322221 1223567889987777777653 367888876543222112223
Q ss_pred ccceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc
Q psy4754 156 ENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~ 234 (304)
-.....|+++|++..|..+-. .+. |+.+|+....................+++ ..+.++.+-...+.|..+|..++
T Consensus 245 l~~P~glavd~~~~~lY~aD~~~~~--I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 245 IQWPNGITLDLLSGRLYWVDSKLHS--ISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTE--EEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCE--EEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCC
Confidence 356789999987766655543 444 46777765443333222111123456666 34456666667788999997777
Q ss_pred eeeEEeeccccceEEEEE
Q psy4754 235 CRVNHLMGHENRVSCLQV 252 (304)
Q Consensus 235 ~~~~~~~~h~~~i~~l~~ 252 (304)
+.+..+.........|++
T Consensus 322 ~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 322 SDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp CCCEEEECSCSCEEEEEE
T ss_pred CceEEEecCCCCCceEEE
Confidence 777666554444555544
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.61 E-value=3.7e-06 Score=69.22 Aligned_cols=189 Identities=13% Similarity=0.106 Sum_probs=123.9
Q ss_pred eeeeecCCc--CcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEE-EeCCC
Q psy4754 60 RVNHLMGHE--NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA-GYNDY 136 (304)
Q Consensus 60 ~~~~~~~h~--~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-g~~dg 136 (304)
.++.+ .|. .-...|.|+ ++.++.+.+.++. ++.+|+.+++.+... .....++ ..+++ +++.++. ...++
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~--v~~iD~~Tgkv~~~~-l~~~~Fg-eGit~--~g~~Ly~ltw~~~ 116 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGT--LRQLSLESAQPVWME-RLGNIFA-EGLAS--DGERLYQLTWTEG 116 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTE--EEECCSSCSSCSEEE-ECTTCCE-EEEEE--CSSCEEEEESSSC
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCE--EEEEECCCCcEEeEE-CCCCcce-eEEEE--eCCEEEEEEccCC
Confidence 34444 354 345789987 4667778888888 578999988877665 4332222 12344 3444444 45689
Q ss_pred eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc---eeeeeeEEEEcCC
Q psy4754 137 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS---ILFGATSVDFSVS 213 (304)
Q Consensus 137 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~~ 213 (304)
.+.+||..+.+.+.++.- ...-..++ +|++.++.+..++. +.++|..+.+.+..+.... .....+.+.+. +
T Consensus 117 ~v~V~D~~Tl~~~~ti~~-~~eGwGLt--~Dg~~L~vSdGs~~--l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRY-SGEGWGLC--YWNGKLVRSDGGTM--LTFHEPDGFALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp EEEEEETTTTEEEEEEEC-SSCCCCEE--EETTEEEEECSSSE--EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEEEEECCcCcEEEEEeC-CCceeEEe--cCCCEEEEECCCCE--EEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence 999999998887777653 22223444 56777666554555 4689998887766654322 11234566666 7
Q ss_pred CCEEEEEeCCCcEEEEeCCCceeeEEeecc-------------ccceEEEEEccCC-CEEEEe
Q psy4754 214 GRLLFAGYNDYTINVWDSLKCCRVNHLMGH-------------ENRVSCLQVSPDG-TAFSSG 262 (304)
Q Consensus 214 g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-------------~~~i~~l~~sp~g-~~lasg 262 (304)
|+.++....+..|.+.|..+++.+..+.-. ..-.+.|||+|++ ++++||
T Consensus 191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 777766667889999999999988876542 1356889999964 566676
No 256
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.60 E-value=5.2e-06 Score=78.40 Aligned_cols=253 Identities=11% Similarity=0.060 Sum_probs=147.6
Q ss_pred CCceeEEeeccccceEeeeecccc--ccceeEEEEcCCCCEEEEeeC------CCcEEEEeCCCceeeeeecC--Cc---
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSI--LFGATSVDFSVSGRLLFAGYN------DYTINVWDSLKCCRVNHLMG--HE--- 68 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~--~~~i~~~~~~~~g~~l~tg~~------dg~v~iwd~~~~~~~~~~~~--h~--- 68 (304)
.|+++..+|..+++++-....... ...+.+.-.-.++.+ +.+.. +|.|..+|..+|+.+=.+.. ..
T Consensus 125 ~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v-~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~ 203 (668)
T 1kv9_A 125 LDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKV-IIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPAL 203 (668)
T ss_dssp TTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEE-EECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTS
T ss_pred CCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEE-EEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCc
Confidence 367899999999988755443211 111211101114444 44432 58999999999876544321 00
Q ss_pred --------------------------CcEEEEEECCCCCeEEEEeCCCc-----------------eEEEEeeeCCCeeE
Q psy4754 69 --------------------------NRVSCLQVSPDGTAFSSGSWDTT-----------------LRCRLFDLRADKEV 105 (304)
Q Consensus 69 --------------------------~~V~~l~~s~d~~~l~sgs~D~~-----------------i~~~~wd~~~~~~~ 105 (304)
.....+++.++...++.++.++. -.+.-+|..+++.+
T Consensus 204 ~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~ 283 (668)
T 1kv9_A 204 PYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLA 283 (668)
T ss_dssp CCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE
T ss_pred cccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCcee
Confidence 01124677787778877766553 02467888898888
Q ss_pred eEEecccee-------eceeeeEEcCCCC---EEEEEeCCCeEEEecCCccccceeccCcc-----------c-c-----
Q psy4754 106 ACYKKDSIL-------FGATSVDFSVSGR---LLFAGYNDYTINVWDSLKCCRVNHLMGHE-----------N-R----- 158 (304)
Q Consensus 106 ~~~~~~~~~-------~~~~~~~~s~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-----------~-~----- 158 (304)
..++..... .......+..+++ .++.++.+|.+.++|..+++.+....... . +
T Consensus 284 W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~ 363 (668)
T 1kv9_A 284 WHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPG 363 (668)
T ss_dssp EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTT
T ss_pred eEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcccccc
Confidence 877642110 0111122233554 68888999999999988877652211000 0 0
Q ss_pred -------------------eeEEEEcCCCcEEEEee------------------------------------cCCceEEE
Q psy4754 159 -------------------VSCLQVSPDGTAFSSGS------------------------------------WDTTLRCR 183 (304)
Q Consensus 159 -------------------v~~v~~sp~~~~las~s------------------------------------~d~~i~i~ 183 (304)
-..++++|+...+.... .++. +.
T Consensus 364 ~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~--l~ 441 (668)
T 1kv9_A 364 VRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGA--LL 441 (668)
T ss_dssp TTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEE--EE
T ss_pred ccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccce--EE
Confidence 01267788766655321 1234 45
Q ss_pred EeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccce-EEEEEccCCCEEE
Q psy4754 184 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV-SCLQVSPDGTAFS 260 (304)
Q Consensus 184 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i-~~l~~sp~g~~la 260 (304)
-||+.+++.+=..+... +.....+...+.+++.|+.|+.++.||..+++.+.++....+.. .-+.+..+|+.++
T Consensus 442 A~D~~tG~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yv 516 (668)
T 1kv9_A 442 AWDPVKQKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV 516 (668)
T ss_dssp EEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEeCCCCcEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEE
Confidence 78888877653333221 12223345578889999999999999999999998876543211 2345566777433
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.58 E-value=2.1e-05 Score=72.90 Aligned_cols=254 Identities=15% Similarity=0.038 Sum_probs=143.0
Q ss_pred CCceeEEeeccccceEeeeeccccc--cceeE-EEEcCCCCEEEEeeC------CCcEEEEeCCCceeeeeecCCcC---
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSIL--FGATS-VDFSVSGRLLFAGYN------DYTINVWDSLKCCRVNHLMGHEN--- 69 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~--~~i~~-~~~~~~g~~l~tg~~------dg~v~iwd~~~~~~~~~~~~h~~--- 69 (304)
.|+++..+|..+++++-........ ..+.+ ... .++.+ +.++. +|.|..+|..+|+.+-.+.....
T Consensus 123 ~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g~v-~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~ 200 (571)
T 2ad6_A 123 ANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTV-LMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDS 200 (571)
T ss_dssp TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEE-EEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHH
T ss_pred CCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECCEE-EEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccc
Confidence 3678889999999886544432211 12221 111 14444 44443 79999999999876543321100
Q ss_pred ----------------------------------cE-EEEEECCCCCeEEEEeC------------CCc--eEEEEeeeC
Q psy4754 70 ----------------------------------RV-SCLQVSPDGTAFSSGSW------------DTT--LRCRLFDLR 100 (304)
Q Consensus 70 ----------------------------------~V-~~l~~s~d~~~l~sgs~------------D~~--i~~~~wd~~ 100 (304)
.+ ..+++.++...++.+.. |.. -.+.-+|..
T Consensus 201 ~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~ 280 (571)
T 2ad6_A 201 VRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLD 280 (571)
T ss_dssp HTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETT
T ss_pred cccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecC
Confidence 00 12455565555555442 210 024678888
Q ss_pred CCeeEeEEeccce-------eeceeeeEEcCCCC---EEEEEeCCCeEEEecCCccccceecc-Cc-----------c-c
Q psy4754 101 ADKEVACYKKDSI-------LFGATSVDFSVSGR---LLFAGYNDYTINVWDSLKCCRVNHLM-GH-----------E-N 157 (304)
Q Consensus 101 ~~~~~~~~~~~~~-------~~~~~~~~~s~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~-~h-----------~-~ 157 (304)
+++.+..++.... .....-+....+++ .++.++.+|.+.+.|..+++.+-... .. . .
T Consensus 281 tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~ 360 (571)
T 2ad6_A 281 TGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGT 360 (571)
T ss_dssp TCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCS
T ss_pred CCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCc
Confidence 8888877764311 00111122224664 56778889999999988876543321 11 0 0
Q ss_pred ce--------------------------eEEEEcCCCcEEEEeec-----------------------------------
Q psy4754 158 RV--------------------------SCLQVSPDGTAFSSGSW----------------------------------- 176 (304)
Q Consensus 158 ~v--------------------------~~v~~sp~~~~las~s~----------------------------------- 176 (304)
++ ..++++|+...+...+.
T Consensus 361 p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~ 440 (571)
T 2ad6_A 361 PVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTK 440 (571)
T ss_dssp EEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTS
T ss_pred eecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCC
Confidence 11 23578888777665543
Q ss_pred --CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecccc-ceEEEEEc
Q psy4754 177 --DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVS 253 (304)
Q Consensus 177 --d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-~i~~l~~s 253 (304)
++. +..+|+.+++.+-.+..... +.+..+...+..++.++.|+.++.||..+++++.++..... .-..+.|.
T Consensus 441 ~~~g~--l~a~D~~tG~~~W~~~~~~~---~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~ 515 (571)
T 2ad6_A 441 KEMGQ--IRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYS 515 (571)
T ss_dssp CCCEE--EEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred CCCCe--EEEEECCCCCEEEEecCCCC---ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEE
Confidence 233 45778777766544432211 11222233466777799999999999999999988764321 12234566
Q ss_pred cCCCEEEEe
Q psy4754 254 PDGTAFSSG 262 (304)
Q Consensus 254 p~g~~lasg 262 (304)
.+|+.++..
T Consensus 516 ~~G~~yv~~ 524 (571)
T 2ad6_A 516 FKGKQYIGS 524 (571)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEEE
Confidence 788766543
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.57 E-value=3e-05 Score=63.14 Aligned_cols=192 Identities=15% Similarity=0.103 Sum_probs=124.0
Q ss_pred eeeeecCCc--CcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEE-EeCCC
Q psy4754 60 RVNHLMGHE--NRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA-GYNDY 136 (304)
Q Consensus 60 ~~~~~~~h~--~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-g~~dg 136 (304)
.++.+ .|. .-...|.|++ +.++.|.+.++.-.++.+|+.+++.+.........++ ..+++ .++.++. ...++
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fg-eGi~~--~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFG-AGIVA--WRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCE-EEEEE--ETTEEEEEESSSS
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcce-eEEEE--eCCEEEEEEeeCC
Confidence 34444 454 3477899986 6677777776644468899999988877665433322 12333 3444544 45689
Q ss_pred eEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCc---eeeeeeEEEEcCC
Q psy4754 137 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS---ILFGATSVDFSVS 213 (304)
Q Consensus 137 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~~ 213 (304)
.+.+||..+.+.+.++.-- ..=..++ ++++.+..+..++. +.++|..+.+.+..+.... .....+.+.+. +
T Consensus 86 ~v~v~D~~tl~~~~ti~~~-~~Gwglt--~dg~~L~vSdgs~~--l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~ 159 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYP-GEGWALT--SDDSHLYMSDGTAV--IRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-N 159 (243)
T ss_dssp EEEEEETTTTEEEEEEECS-SCCCEEE--ECSSCEEEECSSSE--EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEEEEECCcCcEEEEEeCC-CCceEEe--eCCCEEEEECCCCe--EEEEeCCCCeEEEEEEEccCCcccccceeeEEe-C
Confidence 9999999988877766432 2224444 45655555444555 5789998887766654321 11223555554 7
Q ss_pred CCEEEEEeCCCcEEEEeCCCceeeEEeecc-------------ccceEEEEEccCC-CEEEEe
Q psy4754 214 GRLLFAGYNDYTINVWDSLKCCRVNHLMGH-------------ENRVSCLQVSPDG-TAFSSG 262 (304)
Q Consensus 214 g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-------------~~~i~~l~~sp~g-~~lasg 262 (304)
|+.++....+..|.+.|..+++.+..+.-. ..-.+.|||+|++ +.++||
T Consensus 160 G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 160 GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 777766667789999999999988876522 1246889999965 455665
No 259
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.56 E-value=9.6e-06 Score=76.59 Aligned_cols=270 Identities=13% Similarity=0.096 Sum_probs=159.9
Q ss_pred CceeEEeeccccceEeeeecccccc-------c-e-eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCc----C
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILF-------G-A-TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE----N 69 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~-------~-i-~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~----~ 69 (304)
+++|.-+|..+++++=.+....... . + ..+++ .+..++.++.|+.+..+|..+|+.+-.+.... .
T Consensus 75 ~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~ 152 (668)
T 1kv9_A 75 WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPY 152 (668)
T ss_dssp GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSC
T ss_pred CCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcc
Confidence 4578888999998864433221100 0 0 11222 24567788899999999999998764443211 1
Q ss_pred cEEE-EEECCCCCeEEEEeC------CCceEEEEeeeCCCeeEeEEeccce--e------------------------e-
Q psy4754 70 RVSC-LQVSPDGTAFSSGSW------DTTLRCRLFDLRADKEVACYKKDSI--L------------------------F- 115 (304)
Q Consensus 70 ~V~~-l~~s~d~~~l~sgs~------D~~i~~~~wd~~~~~~~~~~~~~~~--~------------------------~- 115 (304)
.+.+ ..+ .++ .++.+.. ++. +..+|..+++.+..+..... . .
T Consensus 153 ~~~~~P~v-~~~-~v~vg~~~~~~~~~g~--v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~g 228 (668)
T 1kv9_A 153 SITGAPRV-VKG-KVIIGNGGAEYGVRGF--VSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGG 228 (668)
T ss_dssp BCCSCCEE-ETT-EEEECCBCTTTCCBCE--EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEE
T ss_pred eecCCCEE-ECC-EEEEeCCCCCcCCCCE--EEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCC
Confidence 1111 011 134 4444432 355 46789988888877653100 0 0
Q ss_pred --ceeeeEEcCCCCEEEEEeCCC-------------------eEEEecCCccccceeccC--cc-------cceeEEEEc
Q psy4754 116 --GATSVDFSVSGRLLFAGYNDY-------------------TINVWDSLKCCRVNHLMG--HE-------NRVSCLQVS 165 (304)
Q Consensus 116 --~~~~~~~s~~~~~l~sg~~dg-------------------~i~iwd~~~~~~~~~~~~--h~-------~~v~~v~~s 165 (304)
.....++.++...++.+..++ .|..+|..+++.+=++.. |. .++....+.
T Consensus 229 g~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~ 308 (668)
T 1kv9_A 229 GTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN 308 (668)
T ss_dssp CCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE
T ss_pred CccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEec
Confidence 012357788888888887766 399999988876544322 22 222222333
Q ss_pred CCCc---EEEEeecCCceEEEEeeecCCceEEEeecCcee---------------------------e-------eeeEE
Q psy4754 166 PDGT---AFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL---------------------------F-------GATSV 208 (304)
Q Consensus 166 p~~~---~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~---------------------------~-------~~~~~ 208 (304)
.+++ .++.++.++.+ ..+|.++++.+...+..... . .-..+
T Consensus 309 ~~G~~~~~v~~~~~~G~l--~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~ 386 (668)
T 1kv9_A 309 IDGKPRKVLMQAPKNGFF--YVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSM 386 (668)
T ss_dssp ETTEEEEEEEECCTTSEE--EEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCC
T ss_pred cCCcEEEEEEEECCCCEE--EEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcc
Confidence 4665 68888888885 57888888766332211100 0 00125
Q ss_pred EEcCCCCEEEEEe------------------------------------CCCcEEEEeCCCceeeEEeeccccceEEEEE
Q psy4754 209 DFSVSGRLLFAGY------------------------------------NDYTINVWDSLKCCRVNHLMGHENRVSCLQV 252 (304)
Q Consensus 209 ~~s~~g~~l~sg~------------------------------------~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~ 252 (304)
+++|+..++.... .++.|..||..+++.+-+...+ .+.....+
T Consensus 387 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~ 465 (668)
T 1kv9_A 387 SFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTL 465 (668)
T ss_dssp EEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEE
T ss_pred eECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCcee
Confidence 6777766554311 2377999999999887766543 33444455
Q ss_pred ccCCCEEEEeecCCeeeeccccccchhhe
Q psy4754 253 SPDGTAFSSGSWDTTLRDEESKNRYMQYL 281 (304)
Q Consensus 253 sp~g~~lasgs~D~~i~~~~~~~~~~~~~ 281 (304)
...+..+..|+.|+.++.+|.+.+.....
T Consensus 466 ~t~gg~vf~g~~dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 466 STAGNLVFQGTAAGQMHAYSADKGEALWQ 494 (668)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EeCCCEEEEECCcccchhhhhhcChhheE
Confidence 66778888899999999998776543333
No 260
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.53 E-value=0.00015 Score=63.61 Aligned_cols=237 Identities=9% Similarity=-0.043 Sum_probs=134.2
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC-
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT- 81 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~- 81 (304)
..|+..++.+++...... ......+++|.+. +.++++-...+.|..+++........+.........+++.+.+.
T Consensus 96 ~~I~~i~~~~~~~~~~~~---~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ 172 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLN---NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK 172 (386)
T ss_dssp SCEEEECTTSCCCEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTE
T ss_pred ccceeeccCCCcEEEEec---CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCe
Confidence 457777777654332221 1223688999975 45566666788999999876543322222223445788887544
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC-C-CeEEEecCCccccceeccCcccce
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-D-YTINVWDSLKCCRVNHLMGHENRV 159 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-d-g~i~iwd~~~~~~~~~~~~h~~~v 159 (304)
++++-...+. +.+.++........... .......+++.|.+..++.... . +.|...++............-...
T Consensus 173 lY~~d~~~~~--I~~~~~dg~~~~~l~~~--~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~P 248 (386)
T 3v65_B 173 LYWTDSGTSR--IEVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWP 248 (386)
T ss_dssp EEEEETTTTE--EEECBTTSCSCEEEECS--SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE
T ss_pred EEEEcCCCCe--EEEEeCCCCceEEeecC--CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCe
Confidence 4455444554 35666654332222221 1223467889987777776654 3 678888765432211112223457
Q ss_pred eEEEEcCCCcEEEEe-ecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE
Q psy4754 160 SCLQVSPDGTAFSSG-SWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 238 (304)
Q Consensus 160 ~~v~~sp~~~~las~-s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~ 238 (304)
..|+++|++..|..+ +..+. |..+|+............ ...+..+++ .++.++++-...+.|..++..+++.+.
T Consensus 249 nGlavd~~~~~lY~aD~~~~~--I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~ 323 (386)
T 3v65_B 249 NGLTIDYAGRRMYWVDAKHHV--IERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQE 323 (386)
T ss_dssp EEEEEEGGGTEEEEEETTTTE--EEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred eeEEEeCCCCEEEEEECCCCE--EEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceE
Confidence 899999866555544 33444 467776643332222211 123467777 456677777777889988876776666
Q ss_pred EeeccccceEEEEE
Q psy4754 239 HLMGHENRVSCLQV 252 (304)
Q Consensus 239 ~~~~h~~~i~~l~~ 252 (304)
.+.........|++
T Consensus 324 ~i~~~~~~p~gi~v 337 (386)
T 3v65_B 324 IIRNKLHFPMDIHT 337 (386)
T ss_dssp EEECSCSCCCCEEE
T ss_pred EEccCCCCCceEEE
Confidence 66543334444444
No 261
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.48 E-value=1.1e-05 Score=77.21 Aligned_cols=198 Identities=12% Similarity=0.001 Sum_probs=108.2
Q ss_pred ceeEEEEc-CCCCEEEEe-eCC----CcEEEEeCCCc-eeeee-ecCCcCcEEEEEECCCCCeEEEEeCCCc---eEEEE
Q psy4754 28 GATSVDFS-VSGRLLFAG-YND----YTINVWDSLKC-CRVNH-LMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRL 96 (304)
Q Consensus 28 ~i~~~~~~-~~g~~l~tg-~~d----g~v~iwd~~~~-~~~~~-~~~h~~~V~~l~~s~d~~~l~sgs~D~~---i~~~~ 96 (304)
.+...+|| |||++||-+ +.+ .+|+++|+.++ +.+.. +. .....++|+|||+.|+-...|.. -+++.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 46789999 999987733 333 35999999988 63321 11 11346899999988777666532 24677
Q ss_pred eeeCCCee--EeEEeccceeeceeeeEEcCCCCEEEEEe---CCCeEEEecCCccc-cc--eec-cCcccceeEEEEcCC
Q psy4754 97 FDLRADKE--VACYKKDSILFGATSVDFSVSGRLLFAGY---NDYTINVWDSLKCC-RV--NHL-MGHENRVSCLQVSPD 167 (304)
Q Consensus 97 wd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~sg~---~dg~i~iwd~~~~~-~~--~~~-~~h~~~v~~v~~sp~ 167 (304)
+++.+.+. ...+......+ ...+.++||+++|+... ....|.++|+.+.. .. ..+ .+.......+.|+.+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~-~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLF-SAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGT 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTC-EEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETT
T ss_pred EECCCCchhcEEEEecCCCce-EEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeC
Confidence 88876532 22332211111 24678999999888754 34567788876542 12 222 223344455555544
Q ss_pred CcEEEEeecC--CceEEEEeeecCC-ceEE-EeecCceeeeeeEEEEcCCCCEEEEEeCCCcEE--EEeC
Q psy4754 168 GTAFSSGSWD--TTLRCRLFDLRAD-KEVA-CYKKDSILFGATSVDFSVSGRLLFAGYNDYTIN--VWDS 231 (304)
Q Consensus 168 ~~~las~s~d--~~i~i~~~d~~~~-~~~~-~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~--iwd~ 231 (304)
+.+++....+ ...++..+|+.+. .... .+.... ...+..+.+. .+.++++...++..+ ++++
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~-~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSE-DVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCS-SEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCC-CcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 4444454444 3444556676542 2111 121111 1122344443 234455566677644 4564
No 262
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.43 E-value=0.00066 Score=58.67 Aligned_cols=236 Identities=9% Similarity=-0.036 Sum_probs=132.7
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCC-C
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG-T 81 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g-~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~-~ 81 (304)
..|+..++.+.+...... ......+++|.+.+ .++.+-...+.|..+++........+.........+++.+.+ +
T Consensus 53 ~~I~~i~~~g~~~~~~~~---~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ 129 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLN---NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK 129 (349)
T ss_dssp SCEEEECTTSCCEEEEEC---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTE
T ss_pred cceEEEeCCCCeeEEeec---CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCe
Confidence 346666776654332221 12236889999754 455566678899999987654332222222345678888754 4
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC-C-CeEEEecCCccccceec-cCcccc
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-D-YTINVWDSLKCCRVNHL-MGHENR 158 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-d-g~i~iwd~~~~~~~~~~-~~h~~~ 158 (304)
++++-...+.| .+.++........... .......+++.|.+..++.... . +.|...++.... ...+ ...-..
T Consensus 130 ly~~d~~~~~I--~~~~~dG~~~~~l~~~--~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~ 204 (349)
T 3v64_C 130 LYWTDSGTSRI--EVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFW 204 (349)
T ss_dssp EEEEETTTTEE--EEEETTSCSCEEEECT--TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSC
T ss_pred EEEEcCCCCeE--EEEcCCCCceEEEEeC--CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCC
Confidence 55555555554 5667654332222221 1223467889987776666544 3 778888765322 2222 222345
Q ss_pred eeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceee
Q psy4754 159 VSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV 237 (304)
Q Consensus 159 v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~ 237 (304)
...++++|++..|..+. ..+. |..+|+............ ...+..+++ .++.++++-...+.|..++..+++.+
T Consensus 205 PnGla~d~~~~~lY~aD~~~~~--I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 205 PNGLTIDYAGRRMYWVDAKHHV--IERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTE--EEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred cceEEEeCCCCEEEEEECCCCE--EEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCcc
Confidence 78999998666555443 3444 457776653332222211 123466777 45667777667788888886666666
Q ss_pred EEeeccccceEEEEE
Q psy4754 238 NHLMGHENRVSCLQV 252 (304)
Q Consensus 238 ~~~~~h~~~i~~l~~ 252 (304)
..+.........|++
T Consensus 280 ~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 280 EIIRNKLHFPMDIHT 294 (349)
T ss_dssp EEEECSCSCCCCEEE
T ss_pred EEeccCCCCCceEEE
Confidence 555443333344443
No 263
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=0.00072 Score=60.98 Aligned_cols=242 Identities=11% Similarity=0.026 Sum_probs=141.2
Q ss_pred eeEEEEcCC--CCEEEEeeCCCcEEEEeCCCceeeeeecC---CcCcEEEEEE-------CCCCCeEEEEeCCC-----c
Q psy4754 29 ATSVDFSVS--GRLLFAGYNDYTINVWDSLKCCRVNHLMG---HENRVSCLQV-------SPDGTAFSSGSWDT-----T 91 (304)
Q Consensus 29 i~~~~~~~~--g~~l~tg~~dg~v~iwd~~~~~~~~~~~~---h~~~V~~l~~-------s~d~~~l~sgs~D~-----~ 91 (304)
...|+|+|. +.++++-...+.|++.|+.++........ .......|+| .++++.|+.+.+.+ .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 468999983 45555655557899999887655433322 1235789999 99999666665543 2
Q ss_pred eEEEEeeeCC-CeeE-----eEEeccceeeceeeeEEcCCCCEEE-EEeCCCeEEEecCC-------cccc---------
Q psy4754 92 LRCRLFDLRA-DKEV-----ACYKKDSILFGATSVDFSVSGRLLF-AGYNDYTINVWDSL-------KCCR--------- 148 (304)
Q Consensus 92 i~~~~wd~~~-~~~~-----~~~~~~~~~~~~~~~~~s~~~~~l~-sg~~dg~i~iwd~~-------~~~~--------- 148 (304)
..+.+.+... +... ..+. .......++++|++..|+ +-..++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~---~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIA---AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEE---EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred ceEEEEecCCCCceeecccceeec---cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 2233443222 1110 1111 112346788899655555 45567889999976 3322
Q ss_pred --ceec--cCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCc-eE---EEeecC-------------ceeeeee
Q psy4754 149 --VNHL--MGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADK-EV---ACYKKD-------------SILFGAT 206 (304)
Q Consensus 149 --~~~~--~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~-~~---~~~~~~-------------~~~~~~~ 206 (304)
...+ .+.......|+|+|+++.+..+- ..+. |+.++..... .+ ..+... .....+.
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~--I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHY--FMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE--EEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCE--EEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 1111 12223467899999999655444 3444 3555543221 11 111110 0111234
Q ss_pred -EEEEc-------CCCCEEEEEeCCCcEEEEeCCCceeeEEeecc------------------------ccceEEEEEcc
Q psy4754 207 -SVDFS-------VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH------------------------ENRVSCLQVSP 254 (304)
Q Consensus 207 -~~~~s-------~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h------------------------~~~i~~l~~sp 254 (304)
.++.. ++|.++++=.....|+.++ .++ .+.++.|. -.....|++++
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 34444 5677777766778899998 445 34455432 12467899999
Q ss_pred C-CCEEEEeecCCeeeeccccccc
Q psy4754 255 D-GTAFSSGSWDTTLRDEESKNRY 277 (304)
Q Consensus 255 ~-g~~lasgs~D~~i~~~~~~~~~ 277 (304)
+ |.++++-+....||.+++..+.
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC
T ss_pred CCCEEEEEeCCCCEEEEEECCCCc
Confidence 6 8888888888999988876554
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.37 E-value=0.001 Score=58.28 Aligned_cols=237 Identities=10% Similarity=0.018 Sum_probs=132.1
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeE-EEEeCCCceEEEEeeeCCCeeEeEE
Q psy4754 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACY 108 (304)
Q Consensus 30 ~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~~~~~~~~~ 108 (304)
+|.+..+. .+|+.+ ....|+..++........+. .......++|.+.++.| ++-...+. |+.++..........
T Consensus 80 ~C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~--I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 80 SCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDR--ILRANLNGSNVEEVV 154 (386)
T ss_dssp CEEECSSC-CEEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTE--EEEEETTSCCEEEEE
T ss_pred eECCcccc-ceeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCc--EEEEecCCCCcEEEE
Confidence 34444443 344333 34578888887654333232 33457789999765544 45444454 456776654332222
Q ss_pred eccceeeceeeeEEcCCCCEEEEE-eCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeee
Q psy4754 109 KKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 187 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~ 187 (304)
... ......+++.+.+..|+.. ...+.|.+.++........+.........+++.|.+..+........-+|..+++
T Consensus 155 ~~~--~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 155 STG--LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp CSS--CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred eCC--CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 211 1123567888766666554 4467899988754332222223335678999998665555444333122456666
Q ss_pred cCCceEEEeecCceeeeeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCC
Q psy4754 188 RADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~ 266 (304)
............ ....+.++++|++..| ++=...+.|..+|.........+.........|++ .++..+.+-...+
T Consensus 233 dG~~~~~~~~~~--~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~ 309 (386)
T 3v65_B 233 DGSGRRIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTK 309 (386)
T ss_dssp TSCSCEEEECSS--CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTT
T ss_pred CCCCcEEEEECC--CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCC
Confidence 543332222211 1235889999866554 44445678999987643322223333445678888 4567777777778
Q ss_pred eeeecccccc
Q psy4754 267 TLRDEESKNR 276 (304)
Q Consensus 267 ~i~~~~~~~~ 276 (304)
.|.-.+...+
T Consensus 310 ~V~~~~~~~G 319 (386)
T 3v65_B 310 SINSANKFTG 319 (386)
T ss_dssp EEEEEETTTC
T ss_pred eEEEEECCCC
Confidence 8877764333
No 265
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.36 E-value=0.00086 Score=56.99 Aligned_cols=194 Identities=13% Similarity=0.078 Sum_probs=111.8
Q ss_pred eeEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeeeec----C-CcCcEEEEEECC-CCCeEEEEeCC------------
Q psy4754 29 ATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLM----G-HENRVSCLQVSP-DGTAFSSGSWD------------ 89 (304)
Q Consensus 29 i~~~~~~~-~g~~l~tg~~dg~v~iwd~~~~~~~~~~~----~-h~~~V~~l~~s~-d~~~l~sgs~D------------ 89 (304)
...+++.+ +|.++++. ..+.+..+|..+++. +.+. + .......+++.+ +|+..++-...
T Consensus 82 p~gi~~~~~~g~l~v~d-~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 82 TYDISYNLQNNQLYIVD-CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp EEEEEEETTTTEEEEEE-TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CceEEEcCCCCcEEEEE-CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 67899997 66655543 445588899875532 2221 1 113467899999 99877764321
Q ss_pred ---CceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEE-eCCCeEEEecCCccc--cceeccCcccceeEEE
Q psy4754 90 ---TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCC--RVNHLMGHENRVSCLQ 163 (304)
Q Consensus 90 ---~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~v~ 163 (304)
..-.+..+|....+...... .......++++++++.++.+ ...+.|.+|++.... ....+....+ ...++
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~---~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~ 235 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLK---ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK 235 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEE---EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred ccCCCceEEEEeCCCCEEEEecc---CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence 11224566765443322111 11234678999999877665 456899999876421 1111111223 77899
Q ss_pred EcCCCcEEEEeec----------CCceEEEEeeecCCceEEEeecCce--eeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 164 VSPDGTAFSSGSW----------DTTLRCRLFDLRADKEVACYKKDSI--LFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 164 ~sp~~~~las~s~----------d~~i~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
+.++|+++++... .+. +..+|.. ++.+..+..... ...+..+++ .+++++++....+.|..+++
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~--v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPK--GIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEE--EEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred ECCCCCEEEEecCcccccccCCCccE--EEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence 9999987766543 233 3566654 455554433210 123455555 46777776666778888876
Q ss_pred C
Q psy4754 232 L 232 (304)
Q Consensus 232 ~ 232 (304)
.
T Consensus 312 ~ 312 (322)
T 2fp8_A 312 D 312 (322)
T ss_dssp -
T ss_pred c
Confidence 4
No 266
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.36 E-value=0.00025 Score=65.58 Aligned_cols=272 Identities=13% Similarity=0.019 Sum_probs=155.1
Q ss_pred CceeEEeec-cccceEeeeeccccc--c------c-eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec--CCcC-
Q psy4754 3 KNHCRLFDL-RADKEVACYKKDSIL--F------G-ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM--GHEN- 69 (304)
Q Consensus 3 ~~~v~~wd~-~~~~~~~~~~~~~~~--~------~-i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~--~h~~- 69 (304)
+++|.-+|. .+++++=........ . . ...++. .+..++.++.|+.+..+|..+|+.+-... .+..
T Consensus 72 ~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~ 149 (571)
T 2ad6_A 72 PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVG 149 (571)
T ss_dssp TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT
T ss_pred CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCcc
Confidence 466888898 888876333322110 0 0 011222 25567778889999999999987654332 1110
Q ss_pred -cEEE-EEECCCCCeEEEEeC------CCceEEEEeeeCCCeeEeEEeccceee--------------------------
Q psy4754 70 -RVSC-LQVSPDGTAFSSGSW------DTTLRCRLFDLRADKEVACYKKDSILF-------------------------- 115 (304)
Q Consensus 70 -~V~~-l~~s~d~~~l~sgs~------D~~i~~~~wd~~~~~~~~~~~~~~~~~-------------------------- 115 (304)
.+.+ ..+. ++ .++.++. ++.+ ..+|..+++.+..+.......
T Consensus 150 ~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v--~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~ 225 (571)
T 2ad6_A 150 STLTQAPFVA-KD-TVLMGCSGAELGVRGAV--NAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWE 225 (571)
T ss_dssp CBCCSCCEEE-TT-EEEEECBCGGGTCCCEE--EEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSS
T ss_pred ceeccCCEEE-CC-EEEEEecCCccCCCCEE--EEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCc
Confidence 1211 1111 34 4444443 5664 678999888887765422110
Q ss_pred -------c---eeeeEEcCCCCEEEEEeCC----------------CeEEEecCCccccceecc--Ccc-------ccee
Q psy4754 116 -------G---ATSVDFSVSGRLLFAGYND----------------YTINVWDSLKCCRVNHLM--GHE-------NRVS 160 (304)
Q Consensus 116 -------~---~~~~~~s~~~~~l~sg~~d----------------g~i~iwd~~~~~~~~~~~--~h~-------~~v~ 160 (304)
+ ...+++.++...++.+..+ +.|..+|..+++.+=++. .|. ....
T Consensus 226 ~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~ 305 (571)
T 2ad6_A 226 GDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV 305 (571)
T ss_dssp TTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE
T ss_pred ccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE
Confidence 0 0124566666677776532 358899988877653332 121 1111
Q ss_pred EEEEcCCCc---EEEEeecCCceEEEEeeecCCceEEEeecCc-ee----------eee---------------------
Q psy4754 161 CLQVSPDGT---AFSSGSWDTTLRCRLFDLRADKEVACYKKDS-IL----------FGA--------------------- 205 (304)
Q Consensus 161 ~v~~sp~~~---~las~s~d~~i~i~~~d~~~~~~~~~~~~~~-~~----------~~~--------------------- 205 (304)
-+...++|+ .++.++.++.+ ..+|.++++.+-..+... .. .++
T Consensus 306 l~~~~~~G~~~~~v~~~~~~G~l--~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~ 383 (571)
T 2ad6_A 306 LTDQPVNGKMTPLLSHIDRNGIL--YTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAM 383 (571)
T ss_dssp EEEEEETTEEEEEEEEECTTSEE--EEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTT
T ss_pred EEecccCCcEEEEEEEeCCCcEE--EEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCc
Confidence 123334674 56677778874 578888877654443211 00 000
Q ss_pred -----eEEEEcCCCCEEEEEe-------------------------------------CCCcEEEEeCCCceeeEEeecc
Q psy4754 206 -----TSVDFSVSGRLLFAGY-------------------------------------NDYTINVWDSLKCCRVNHLMGH 243 (304)
Q Consensus 206 -----~~~~~s~~g~~l~sg~-------------------------------------~d~~i~iwd~~~~~~~~~~~~h 243 (304)
..++++|+..++.... .++.+..||..+++.+-++..
T Consensus 384 Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~- 462 (571)
T 2ad6_A 384 GFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE- 462 (571)
T ss_dssp CSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE-
T ss_pred cccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC-
Confidence 2356788877666543 347899999999988776643
Q ss_pred ccceEEEEEccCCCEEEEeecCCeeeeccccccchhheee
Q psy4754 244 ENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 244 ~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
..++.+..+...+..+..++.|+.|+.+|.+.+.....++
T Consensus 463 ~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 463 KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 2333333344445666678999999999887665444333
No 267
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.35 E-value=0.0023 Score=61.45 Aligned_cols=255 Identities=11% Similarity=0.099 Sum_probs=149.6
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecC-------CcCcEEEEEEC
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-------HENRVSCLQVS 77 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~-------h~~~V~~l~~s 77 (304)
-+..||..+++...... ......|.++...++|.+.+. ..++.+..||..+++....... ....|.++...
T Consensus 194 Gl~~~~~~~~~~~~~~~-~~~~~~i~~i~~d~~g~lwig-t~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d 271 (795)
T 4a2l_A 194 GLYTYSITQKTFEKVIP-ILGTKQIQAILQQSPTRIWVA-TEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMD 271 (795)
T ss_dssp CEEEEETTTCCEEECC-----CCCEEEEEEEETTEEEEE-EBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEEC
T ss_pred CEEEEeCCCCeEEEecC-CCCCCeeEEEEEcCCCCEEEE-ECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEc
Confidence 46667776665432211 111234788888777776654 4444588999877653322111 24679999998
Q ss_pred CCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc------eeeceeeeEEcCCCCEEEEEeCCCeEEEecCCcccccee
Q psy4754 78 PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS------ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 151 (304)
Q Consensus 78 ~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 151 (304)
++|++.+.. .+| +..+|........ +.... ....+.++...++|. +-.|+.++.|..|+..+.. +..
T Consensus 272 ~~g~lWigt-~~G---l~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~-~~~ 344 (795)
T 4a2l_A 272 SQNRLWIGT-FND---LNIYHEGTDSFAS-YSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR-FKN 344 (795)
T ss_dssp TTSCEEEEE-SSC---EEEEETTTTEEEE-ECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS-SEE
T ss_pred CCCCEEEEe-CCh---hheEcCCCCeEEE-EecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc-ceE
Confidence 888766543 344 3578876554332 22110 012356777777776 4457777888898854432 111
Q ss_pred cc-------CcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC-------ceeeeeeEEEEcCCCCEE
Q psy4754 152 LM-------GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD-------SILFGATSVDFSVSGRLL 217 (304)
Q Consensus 152 ~~-------~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~s~~g~~l 217 (304)
+. -....|.++...++|++.+ |+.++-+ ..|+..+.+.. .+... -....+.++...++|++|
T Consensus 345 ~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl--~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~~l 420 (795)
T 4a2l_A 345 IRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGGL--NLYNPITQRFT-SYTLQEDESARGIGSNNIKAVYVDEKKSLV 420 (795)
T ss_dssp ECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSCE--EEECTTTCCEE-EECCC------CCSCSCEEEEEEETTTTEE
T ss_pred EcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCCe--EEEcCCCCcEE-EEecCCCCcccCCCCccEEEEEEcCCCCEE
Confidence 11 1234689999988887554 5555443 57777654332 22111 011346788888889856
Q ss_pred EEEeCCCcEEEEeCCCceeeEEee-----ccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 218 FAGYNDYTINVWDSLKCCRVNHLM-----GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 218 ~sg~~d~~i~iwd~~~~~~~~~~~-----~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
..|..++-+..||..+++. ..+. .+...|.++...++|...+.. .+ .+..++...
T Consensus 421 Wigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~ 480 (795)
T 4a2l_A 421 YIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQ 480 (795)
T ss_dssp EEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTT
T ss_pred EEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCC
Confidence 6677777899999876543 3332 134679999999888866554 34 455555443
No 268
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.34 E-value=0.00034 Score=65.00 Aligned_cols=274 Identities=12% Similarity=0.057 Sum_probs=153.7
Q ss_pred CceeEEeec-cccceEeeeecccccc---------ceeEEEEcCCCCE----EEEeeCCCcEEEEeCCCceeeeeecCCc
Q psy4754 3 KNHCRLFDL-RADKEVACYKKDSILF---------GATSVDFSVSGRL----LFAGYNDYTINVWDSLKCCRVNHLMGHE 68 (304)
Q Consensus 3 ~~~v~~wd~-~~~~~~~~~~~~~~~~---------~i~~~~~~~~g~~----l~tg~~dg~v~iwd~~~~~~~~~~~~h~ 68 (304)
+++|.-+|. .+++++=.+....... ....++++|.+.. ++.++.|+.+.-+|..+|+.+=......
T Consensus 72 ~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~ 151 (599)
T 1w6s_A 72 PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSD 151 (599)
T ss_dssp TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCC
Confidence 467888899 8888763333221110 0123455443333 7778889999999999987653322111
Q ss_pred ----CcEEE-EEECCCCCeEEEEe------CCCceEEEEeeeCCCeeEeEEeccceeec---------------------
Q psy4754 69 ----NRVSC-LQVSPDGTAFSSGS------WDTTLRCRLFDLRADKEVACYKKDSILFG--------------------- 116 (304)
Q Consensus 69 ----~~V~~-l~~s~d~~~l~sgs------~D~~i~~~~wd~~~~~~~~~~~~~~~~~~--------------------- 116 (304)
..+.+ -.+. ++ .++.++ .++.+ +-+|..+++.+..+........
T Consensus 152 ~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v--~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~ 227 (599)
T 1w6s_A 152 IKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYL--TAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGT 227 (599)
T ss_dssp GGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEE--EEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHH
T ss_pred CCccceeecCCEEE-CC-EEEEEecccccCCCCeE--EEEECCCCcEEEEEcCCCCcccccccccccccccccccccccc
Confidence 01211 1111 34 444443 36664 6789998888877654321100
Q ss_pred ---------------eeeeEEcCCCCEEEEEeCC----------------CeEEEecCCccccceecc--Cccc------
Q psy4754 117 ---------------ATSVDFSVSGRLLFAGYND----------------YTINVWDSLKCCRVNHLM--GHEN------ 157 (304)
Q Consensus 117 ---------------~~~~~~s~~~~~l~sg~~d----------------g~i~iwd~~~~~~~~~~~--~h~~------ 157 (304)
-...++.++...++.+..+ +.|..+|..+++.+=++. .|..
T Consensus 228 ~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~ 307 (599)
T 1w6s_A 228 GTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGV 307 (599)
T ss_dssp HTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCC
T ss_pred ccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCC
Confidence 0123556677788877654 378899988877653332 2211
Q ss_pred -ceeEEEEc-CCC---cEEEEeecCCceEEEEeeecCCceEEEeecCc-------------ee-----------------
Q psy4754 158 -RVSCLQVS-PDG---TAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-------------IL----------------- 202 (304)
Q Consensus 158 -~v~~v~~s-p~~---~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~-------------~~----------------- 202 (304)
...-+... .+| ..++.++.++.+ ..+|.++++.+-..+... ..
T Consensus 308 ~~p~l~d~~~~~G~~~~~v~~~~~~G~l--~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~ 385 (599)
T 1w6s_A 308 NVMMLSEQKDKDGKARKLLTHPDRNGIV--YTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDI 385 (599)
T ss_dssp CCCEEEEEECTTSCEEEEEEEECTTSEE--EEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEE
T ss_pred CccEEEeccccCCcEEEEEEEECCCcEE--EEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEe
Confidence 11112232 467 467778888875 578888877654433110 00
Q ss_pred -------eeeeEEEEcCCCCEEEEEe---------------------------------------CCCcEEEEeCCCcee
Q psy4754 203 -------FGATSVDFSVSGRLLFAGY---------------------------------------NDYTINVWDSLKCCR 236 (304)
Q Consensus 203 -------~~~~~~~~s~~g~~l~sg~---------------------------------------~d~~i~iwd~~~~~~ 236 (304)
..-..++++|+..++.+.. ..+.+.-||+.+++.
T Consensus 386 ~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~ 465 (599)
T 1w6s_A 386 CPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDY 465 (599)
T ss_dssp SSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCE
T ss_pred ccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCE
Confidence 0001345666655554421 346788899999887
Q ss_pred eEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheee
Q psy4754 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 237 ~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
+-+... ..+...-.+...+..+..++.|+.++.+|.+.+.....++
T Consensus 466 ~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 466 KWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 765532 2222221233345666678999999999887766444443
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.32 E-value=0.0012 Score=57.02 Aligned_cols=235 Identities=10% Similarity=0.027 Sum_probs=129.6
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeE-EEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
.+|.+..++ .+|+-+ ....|+..++........+. .......++|.+..+.| .+-...+.| ..+++........
T Consensus 36 ~~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I--~r~~~~g~~~~~~ 110 (349)
T 3v64_C 36 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRI--LRANLNGSNVEEV 110 (349)
T ss_dssp SCEEESSSC-CEEEEE-CBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEE--EEEETTSCSCEEE
T ss_pred CcccccccC-ceeEee-cccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCce--EEEecCCCCceEE
Confidence 455555554 344333 34468888876544333232 23457889999765544 454445553 5567664432222
Q ss_pred EeccceeeceeeeEEcCCCCEEEEE-eCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEee
Q psy4754 108 YKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFD 186 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d 186 (304)
.... ......+++.+.+..++.. ...+.|.+.++..................++++|.+..+........-+|..++
T Consensus 111 ~~~~--~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 111 VSTG--LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp ECSS--CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EeCC--CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 2111 1123568888766666555 446889998875432222222333567899999965544433333212245666
Q ss_pred ecCCceEEEeecCceeeeeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecC
Q psy4754 187 LRADKEVACYKKDSILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D 265 (304)
+.......... .. ....+.++++|++..| ++-...+.|..+|.........+.........|++ .++..+.+-...
T Consensus 189 ~dG~~~~~~~~-~~-~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~ 265 (349)
T 3v64_C 189 MDGSGRRIIAD-TH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHT 265 (349)
T ss_dssp TTSCSCEESCC-SS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTT
T ss_pred CCCCCcEEEEE-CC-CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCC
Confidence 65433222111 11 2246889999866554 44445678999987643222223333456678888 456777777777
Q ss_pred Ceeeeccc
Q psy4754 266 TTLRDEES 273 (304)
Q Consensus 266 ~~i~~~~~ 273 (304)
+.|.-.+.
T Consensus 266 ~~V~~~~~ 273 (349)
T 3v64_C 266 KSINSANK 273 (349)
T ss_dssp TEEEEEET
T ss_pred CeEEEEEc
Confidence 77776653
No 270
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.32 E-value=0.00085 Score=55.17 Aligned_cols=202 Identities=11% Similarity=0.089 Sum_probs=117.0
Q ss_pred eecCCcCcEEEEEECCCCCeEEEEeC-CCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEe
Q psy4754 63 HLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 141 (304)
Q Consensus 63 ~~~~h~~~V~~l~~s~d~~~l~sgs~-D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iw 141 (304)
.+.+-.+.+..+++.|+++.|++.+. ++. +...|.. ++.++.+..... ...-.+++.+++.++++.-.++.+.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~--I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAA--IVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEE--EEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCe--EEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 34455567999999998777766543 444 4556766 555555543211 123467777888766665567788888
Q ss_pred cCCcccc---ceec------cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeec-CCceEEEeec-----Cceeeeee
Q psy4754 142 DSLKCCR---VNHL------MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR-ADKEVACYKK-----DSILFGAT 206 (304)
Q Consensus 142 d~~~~~~---~~~~------~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~-~~~~~~~~~~-----~~~~~~~~ 206 (304)
++..... +... ...+.....|+++|+++.|.++.......++.|+-. ....+..... ........
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 7544321 1111 112344689999999877666665544433444410 1111221111 11123457
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEeCCCceeeEEeeccc---------cceEEEEEccCCCEEEEeecCCeeee
Q psy4754 207 SVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHE---------NRVSCLQVSPDGTAFSSGSWDTTLRD 270 (304)
Q Consensus 207 ~~~~s~~g~-~l~sg~~d~~i~iwd~~~~~~~~~~~~h~---------~~i~~l~~sp~g~~lasgs~D~~i~~ 270 (304)
+++++|... +++.....+.+.++|.. ++.+..+.-.. ..--.|+|.|+|+.+++ |+-..+..
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~ 248 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYR 248 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEE
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEE
Confidence 899998754 55556666778889865 44444433221 25688999999997777 55444433
No 271
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.29 E-value=0.00023 Score=66.19 Aligned_cols=254 Identities=12% Similarity=-0.012 Sum_probs=140.8
Q ss_pred CCceeEEeeccccceEeeeecccc--ccceeE-EEEcCCCCEEEEee------CCCcEEEEeCCCceeeeeecCCcC---
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSI--LFGATS-VDFSVSGRLLFAGY------NDYTINVWDSLKCCRVNHLMGHEN--- 69 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~--~~~i~~-~~~~~~g~~l~tg~------~dg~v~iwd~~~~~~~~~~~~h~~--- 69 (304)
.|+++.-+|..+++++-....... ...+++ -.. .++. ++.++ .+|.|+-+|..+|+.+=.+.....
T Consensus 129 ~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~ 206 (599)
T 1w6s_A 129 LDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKD 206 (599)
T ss_dssp TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHH
T ss_pred CCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCE-EEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccc
Confidence 367788889999988644332221 112221 111 1444 44444 389999999999876533221100
Q ss_pred ----------------------------------cEE-EEEECCCCCeEEEEeCCCc--------------eEEEEeeeC
Q psy4754 70 ----------------------------------RVS-CLQVSPDGTAFSSGSWDTT--------------LRCRLFDLR 100 (304)
Q Consensus 70 ----------------------------------~V~-~l~~s~d~~~l~sgs~D~~--------------i~~~~wd~~ 100 (304)
.++ ..++.++...++.+..+.. -.+.-+|..
T Consensus 207 ~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~ 286 (599)
T 1w6s_A 207 LLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD 286 (599)
T ss_dssp HTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT
T ss_pred cccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCC
Confidence 011 2345566666666654431 124678888
Q ss_pred CCeeEeEEecccee-------eceeeeEEc-CCC---CEEEEEeCCCeEEEecCCccccceeccCc------------c-
Q psy4754 101 ADKEVACYKKDSIL-------FGATSVDFS-VSG---RLLFAGYNDYTINVWDSLKCCRVNHLMGH------------E- 156 (304)
Q Consensus 101 ~~~~~~~~~~~~~~-------~~~~~~~~s-~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~h------------~- 156 (304)
+++....++..... ....-+... .++ ..++.++.+|.+.+.|..+++.+-...-. .
T Consensus 287 TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g 366 (599)
T 1w6s_A 287 TGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTG 366 (599)
T ss_dssp TCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTC
T ss_pred CCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCC
Confidence 88888777643210 000112222 456 46777889999999998887765332110 0
Q ss_pred cce--------------------------eEEEEcCCCcEEEEeec----------------------------------
Q psy4754 157 NRV--------------------------SCLQVSPDGTAFSSGSW---------------------------------- 176 (304)
Q Consensus 157 ~~v--------------------------~~v~~sp~~~~las~s~---------------------------------- 176 (304)
.++ ..++++|+..++.....
T Consensus 367 ~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~ 446 (599)
T 1w6s_A 367 QPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDR 446 (599)
T ss_dssp CEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBT
T ss_pred ceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCc
Confidence 011 23567777666554322
Q ss_pred -----CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeecccc-ceEEE
Q psy4754 177 -----DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCL 250 (304)
Q Consensus 177 -----d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-~i~~l 250 (304)
++. +.-||+.+++.+=..+... +...-.+...+.+++.++.|+.++.||..+++++-++....+ ...-+
T Consensus 447 ~~~~~~G~--l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~ 521 (599)
T 1w6s_A 447 QNYEGLGQ--IKAYNAITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPM 521 (599)
T ss_dssp TTTBCCEE--EEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred ccCCCcCe--EEEEECCCCCEEeEecCCC---CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccE
Confidence 122 3456666665433222111 111111223577788899999999999999999988764332 22346
Q ss_pred EEccCCCEEEEe
Q psy4754 251 QVSPDGTAFSSG 262 (304)
Q Consensus 251 ~~sp~g~~lasg 262 (304)
.|..+|+.++..
T Consensus 522 ~y~~~G~qyv~~ 533 (599)
T 1w6s_A 522 TYTHKGTQYVAI 533 (599)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEeCCEEEEEE
Confidence 677788755443
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.28 E-value=8.7e-05 Score=71.04 Aligned_cols=197 Identities=12% Similarity=0.026 Sum_probs=107.6
Q ss_pred cEEEEEEC-CCCCeEEEEeC-CCc--eEEEEeeeCCC-eeEeEEeccceeeceeeeEEcCCCCEEEEEeCC-----CeEE
Q psy4754 70 RVSCLQVS-PDGTAFSSGSW-DTT--LRCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTIN 139 (304)
Q Consensus 70 ~V~~l~~s-~d~~~l~sgs~-D~~--i~~~~wd~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-----g~i~ 139 (304)
.+...+|| |||++|+-+.. ++. ..++++|+.++ +.+.. ........+.|+||++.|+....+ ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~----~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD----KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC----CEEEECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc----cccCceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 67889999 99997774332 222 23688999877 53210 001112467899999887776554 3688
Q ss_pred EecCCccccc--eecc-CcccceeEEEEcCCCcEEEEeecC-CceEEEEeeecCCc-eE--EEeecCceeeeeeEEEEcC
Q psy4754 140 VWDSLKCCRV--NHLM-GHENRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLRADK-EV--ACYKKDSILFGATSVDFSV 212 (304)
Q Consensus 140 iwd~~~~~~~--~~~~-~h~~~v~~v~~sp~~~~las~s~d-~~i~i~~~d~~~~~-~~--~~~~~~~~~~~~~~~~~s~ 212 (304)
++++.+.+.. ..+. ........+.++|||+.|+..+.+ ..-.++++|+.++. .. ..+.... .....++.|+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~s~~~~~ 329 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE-KGVRYDVQMHG 329 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC-TTCCEEEEEET
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC-CCceEEEeeee
Confidence 8888765422 1111 222345678999999987755532 23345778887642 11 2221111 11223444444
Q ss_pred CCCEEEEEeCC--C--cEEEEeCCCceeeEE-eecccc--ceEEEEEccCCCEEEEeecCCeeeecc
Q psy4754 213 SGRLLFAGYND--Y--TINVWDSLKCCRVNH-LMGHEN--RVSCLQVSPDGTAFSSGSWDTTLRDEE 272 (304)
Q Consensus 213 ~g~~l~sg~~d--~--~i~iwd~~~~~~~~~-~~~h~~--~i~~l~~sp~g~~lasgs~D~~i~~~~ 272 (304)
++.+++....+ + .|..++..++..... +..|.. .+..+.+. .+..+++...|+..+++-
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 44455555443 3 455566654212222 333443 34555554 234556777788766653
No 273
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.25 E-value=0.0015 Score=55.71 Aligned_cols=228 Identities=13% Similarity=0.031 Sum_probs=128.6
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCceeeee-ecCCcCcEEEEEECCC-C
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNH-LMGHENRVSCLQVSPD-G 80 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~~~~~~-~~~h~~~V~~l~~s~d-~ 80 (304)
..|+..|+.+.......... ......+++|.+. +.++.+-...+.|..+++........ +...-.....+++.+. +
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred CeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 46888898876411111111 1123678999885 55666777788999999876532111 1112234557888764 4
Q ss_pred CeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC--CCeEEEecCCccccceec-cCccc
Q psy4754 81 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHL-MGHEN 157 (304)
Q Consensus 81 ~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~-~~h~~ 157 (304)
+++++-...+. +.+.++........... .......+++.|.+..++.... .+.|...++.... ...+ ...-.
T Consensus 92 ~ly~~d~~~~~--I~~~~~dG~~~~~l~~~--~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~ 166 (318)
T 3sov_A 92 KLYWTDSETNR--IEVSNLDGSLRKVLFWQ--ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIY 166 (318)
T ss_dssp EEEEEETTTTE--EEEEETTSCSCEEEECS--SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCS
T ss_pred eEEEEECCCCE--EEEEECCCCcEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCC
Confidence 45555444555 35677654322222211 1223467888887777777653 5788888765322 2222 12234
Q ss_pred ceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 158 RVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 158 ~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
....|+++|++..+..+. ..+. |..+|+.......... .. ...+..+++. .+.++.+-...+.|..++..+++.
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~--I~~~d~dG~~~~~~~~-~~-~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNF--IHKSNLDGTNRQAVVK-GS-LPHPFALTLF-EDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTE--EEEEETTSCSCEEEEC-SC-CSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CccEEEEeccCCEEEEEECCCCE--EEEEcCCCCceEEEec-CC-CCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence 568999999766555443 3444 4577776433322222 11 1234566664 345666666678899999877766
Q ss_pred eEEeec
Q psy4754 237 VNHLMG 242 (304)
Q Consensus 237 ~~~~~~ 242 (304)
...+..
T Consensus 242 ~~~i~~ 247 (318)
T 3sov_A 242 LREIHS 247 (318)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 555544
No 274
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.25 E-value=0.0028 Score=60.77 Aligned_cols=227 Identities=10% Similarity=-0.006 Sum_probs=125.9
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCC-CCEEEEeeCCCcEEEEeCCCc----eeeeeecCCcCcEEEEEECCC
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAGYNDYTINVWDSLKC----CRVNHLMGHENRVSCLQVSPD 79 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~-g~~l~tg~~dg~v~iwd~~~~----~~~~~~~~h~~~V~~l~~s~d 79 (304)
.||..++...+...... ....+.+++|.+. +.++++-...+.|+.+++... .....+.........|++.+.
T Consensus 405 ~Ir~i~l~~~~~~~l~~---~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp SEEEECTTSCCCEEEEC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred ceeEeeccCCcceeeec---CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 45666665543322111 1233678999885 456667667788999988642 222222223345567888876
Q ss_pred CC-eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC--CCeEEEecCCccccceeccCcc
Q psy4754 80 GT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHE 156 (304)
Q Consensus 80 ~~-~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h~ 156 (304)
++ ++++-...+. |.+.++........+... ......+++.|.+.+|+.... .+.|.+.++........+...-
T Consensus 482 ~~~LY~tD~~~~~--I~v~~ldG~~~~~l~~~~--l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l 557 (791)
T 3m0c_C 482 HSNIYWTDSVLGT--VSVADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI 557 (791)
T ss_dssp TTEEEEEETTTTE--EEEEETTSSSEEEEEECT--TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred CCcEEEEecCCCe--EEEEeCCCCeEEEEEeCC--CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCC
Confidence 65 4445444555 466777644332222211 123568899998777777653 2678888875433222222333
Q ss_pred cceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q psy4754 157 NRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 235 (304)
Q Consensus 157 ~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~ 235 (304)
.....|++++.+..|+.+-. .+. |+.+++...................++++.. +.++++-...+.|...+..++.
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~--I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHS--ISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTE--EEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCceEEEEecCCCeEEEEeCCCCc--EEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCc
Confidence 56889999976665555443 334 4677776544433333221112334666533 3555555566778888876665
Q ss_pred eeEEee
Q psy4754 236 RVNHLM 241 (304)
Q Consensus 236 ~~~~~~ 241 (304)
.+..+.
T Consensus 635 ~~~~l~ 640 (791)
T 3m0c_C 635 DVNLLA 640 (791)
T ss_dssp CCEEEE
T ss_pred ceEEee
Confidence 555554
No 275
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.25 E-value=1.4e-05 Score=75.90 Aligned_cols=240 Identities=9% Similarity=-0.021 Sum_probs=128.1
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCE-EEEeeCCCcEEEEeCCC----ceeeeeecCCcCcEEEEEECC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL-LFAGYNDYTINVWDSLK----CCRVNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~-l~tg~~dg~v~iwd~~~----~~~~~~~~~h~~~V~~l~~s~ 78 (304)
..|+..++.+.+...... ....+.+++|.+.+.. +++-...+.|+.+++.. ......+.........|++.+
T Consensus 386 ~~I~~id~~~~~~~~~~~---~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TC-CEECTTSCCEECCSC---CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred cceEEEeCCCCcceeeec---cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 457777777665432221 1223678899986554 44555678999999865 222221211112345677775
Q ss_pred C-CCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC--CCeEEEecCCccccceeccCc
Q psy4754 79 D-GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGH 155 (304)
Q Consensus 79 d-~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h 155 (304)
. ++++++-...+.| .+.++........+... ......+++.|.+.+|+.... .+.|.+.++............
T Consensus 463 ~~g~LY~tD~~~~~I--~v~d~dg~~~~~l~~~~--~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~ 538 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTV--SVADTKGVKRKTLFREQ--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 538 (699)
T ss_dssp SSSBCEECCTTTSCE--EEEBSSSCCEEEECCCS--SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSS
T ss_pred eCCcEEEEeccCCeE--EEEecCCCceEEEEeCC--CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCC
Confidence 4 4555554445554 56776543322222211 123467888887666666543 267888776432211111122
Q ss_pred ccceeEEEEcCCCcEE-EEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCc
Q psy4754 156 ENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKC 234 (304)
Q Consensus 156 ~~~v~~v~~sp~~~~l-as~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~ 234 (304)
-.....|+++|++..| .+-+..+. |..+++....................+++..+ .++++....+.|..++..++
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~--I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHS--ISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTE--EEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred CCCccEEEEeccCCEEEEEecCCCe--EEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 2456789999876544 44444445 45777764333222221111122345555444 55566666788999998888
Q ss_pred eeeEEeeccccceEEEEEc
Q psy4754 235 CRVNHLMGHENRVSCLQVS 253 (304)
Q Consensus 235 ~~~~~~~~h~~~i~~l~~s 253 (304)
+.+..+.......+.|++.
T Consensus 616 ~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 616 SDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp EEEECCCTTCSSCCCCCBC
T ss_pred CceEEeecCCCCCcEEEEe
Confidence 7776665433344555444
No 276
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.23 E-value=0.0042 Score=59.64 Aligned_cols=252 Identities=12% Similarity=0.108 Sum_probs=149.9
Q ss_pred eEEeeccccceEeeeec-----cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeee--eec----CCcCcEEEE
Q psy4754 6 CRLFDLRADKEVACYKK-----DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN--HLM----GHENRVSCL 74 (304)
Q Consensus 6 v~~wd~~~~~~~~~~~~-----~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~--~~~----~h~~~V~~l 74 (304)
+.+||..+++....... ......|.++...++|.+- .|+.++-|..|+..+..... ... .....|.++
T Consensus 284 l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i 362 (795)
T 4a2l_A 284 LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCI 362 (795)
T ss_dssp EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEE
T ss_pred hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEE
Confidence 66777776654322111 1122348899988888755 56677789999876543221 110 124579999
Q ss_pred EECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc-------eeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccc
Q psy4754 75 QVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-------ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 147 (304)
Q Consensus 75 ~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~-------~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 147 (304)
...++|++.+ |..++-+ ..||..+.+... +.... ....+.++...+++..+..|+.++.+..||..+++
T Consensus 363 ~~d~~g~lWi-Gt~~~Gl--~~~~~~~~~~~~-~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 363 VEDKDKNLWI-GTNDGGL--NLYNPITQRFTS-YTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp EECTTSCEEE-EESSSCE--EEECTTTCCEEE-ECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred EECCCCCEEE-EECCCCe--EEEcCCCCcEEE-EecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 9888887555 5555443 567766543322 21110 01235566677777746667777889999976543
Q ss_pred cceecc-----CcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC----c-eeeeeeEEEEcCCCCEE
Q psy4754 148 RVNHLM-----GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD----S-ILFGATSVDFSVSGRLL 217 (304)
Q Consensus 148 ~~~~~~-----~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~----~-~~~~~~~~~~s~~g~~l 217 (304)
. ..+. .....|.++...+++++.+.. .++ +..||..+.+.. .+... . ....+.++...++|.+.
T Consensus 439 ~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G---l~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lW 512 (795)
T 4a2l_A 439 V-ENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA---LVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKRLW 512 (795)
T ss_dssp E-EEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC---EEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCCEE
T ss_pred E-EEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc---eeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCCEE
Confidence 2 2221 134578999998888765543 344 357887665432 22211 1 11346788888999877
Q ss_pred EEEeCCCcEEEEeCCCceeeEEee-------ccccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 218 FAGYNDYTINVWDSLKCCRVNHLM-------GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 218 ~sg~~d~~i~iwd~~~~~~~~~~~-------~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
+... +-+..||..+... .+. .+...|.++...++|...++.. + -|..++..
T Consensus 513 igt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~ 570 (795)
T 4a2l_A 513 IGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEK 570 (795)
T ss_dssp EEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETT
T ss_pred EEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCC
Confidence 6554 4688888766544 222 1345799999999998666543 3 45555543
No 277
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.22 E-value=0.0024 Score=59.21 Aligned_cols=271 Identities=13% Similarity=0.040 Sum_probs=151.5
Q ss_pred eeEEeeccccceEeeeeccccccc-------eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCc--C--cEE-
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFG-------ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE--N--RVS- 72 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~-------i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~--~--~V~- 72 (304)
.|.-+|..+++++=.+........ ...++. .+..++.++.|+.+.-+|..+|+.+=...... . .+.
T Consensus 79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~ 156 (582)
T 1flg_A 79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTG 156 (582)
T ss_dssp EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCS
T ss_pred CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCccccc
Confidence 477889999988644333221100 011222 24567778899999999999997654332211 0 111
Q ss_pred EEEECC---CCC-eEEEEeC------CCceEEEEeeeCCCeeEeEEeccceee---------------------------
Q psy4754 73 CLQVSP---DGT-AFSSGSW------DTTLRCRLFDLRADKEVACYKKDSILF--------------------------- 115 (304)
Q Consensus 73 ~l~~s~---d~~-~l~sgs~------D~~i~~~~wd~~~~~~~~~~~~~~~~~--------------------------- 115 (304)
.-.+.. +++ .++.++. ++.+ .-+|..+++.+..........
T Consensus 157 sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v--~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~ 234 (582)
T 1flg_A 157 APTIVKDGKTGKVLLIHGSSGDEFGVVGRL--FARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPT 234 (582)
T ss_dssp CCEEEECTTTCCEEEEECCBCGGGCCBCEE--EEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTT
T ss_pred CCEEeCCCcCCcEEEEEeccccccCCCCEE--EEEECCCCCEEeecCCCccccccccCcccccccccccccCCCcccccc
Confidence 111111 233 5555542 5553 567888777776554311000
Q ss_pred ---------c---eeeeEEcCCCCEEEEEeC--------------------C----CeEEEecCCccccceecc--Ccc-
Q psy4754 116 ---------G---ATSVDFSVSGRLLFAGYN--------------------D----YTINVWDSLKCCRVNHLM--GHE- 156 (304)
Q Consensus 116 ---------~---~~~~~~s~~~~~l~sg~~--------------------d----g~i~iwd~~~~~~~~~~~--~h~- 156 (304)
+ -...++.++...++.+.. | +.|..+|..+++.+=++. .|.
T Consensus 235 g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~ 314 (582)
T 1flg_A 235 GKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDA 314 (582)
T ss_dssp SBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCC
T ss_pred ccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCc
Confidence 0 013456677777877663 2 589999998887654432 221
Q ss_pred -------cceeEEEEc-CCCc---EEEEeecCCceEEEEeeecCCceEEEeecCcee-----------------------
Q psy4754 157 -------NRVSCLQVS-PDGT---AFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL----------------------- 202 (304)
Q Consensus 157 -------~~v~~v~~s-p~~~---~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~----------------------- 202 (304)
.++ -+... .+|+ .++.++.++.+ +.+|.++++.+-.+......
T Consensus 315 wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l--~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~ 391 (582)
T 1flg_A 315 WDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFF--YVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPL 391 (582)
T ss_dssp SCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEE--EEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCC
T ss_pred ccccCCCCcE-EEeeecCCCCEEEEEEEECCCceE--EEEECCCCCEecccccccCccccccccccCCCEeEccccCCcc
Confidence 122 12222 4664 67788888885 57888887765443322100
Q ss_pred -------------ee-------eeEEEEcCCCCEEEEEe---------------------------------CCCcEEEE
Q psy4754 203 -------------FG-------ATSVDFSVSGRLLFAGY---------------------------------NDYTINVW 229 (304)
Q Consensus 203 -------------~~-------~~~~~~s~~g~~l~sg~---------------------------------~d~~i~iw 229 (304)
.+ -..++++|+..++.+.. .++.+.-|
T Consensus 392 ~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~ 471 (582)
T 1flg_A 392 PEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAM 471 (582)
T ss_dssp CCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEE
T ss_pred ccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEE
Confidence 00 01345666655444422 25789999
Q ss_pred eCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccccchhheee
Q psy4754 230 DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYMQYLLR 283 (304)
Q Consensus 230 d~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~~~~~~~~ 283 (304)
|..+++.+-+...+ .++..-.+...+..+..|+.|+.++.+|.+.+.....++
T Consensus 472 D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 472 DPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp CTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 99999887665432 232222223345667779999999999987766444444
No 278
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.19 E-value=0.0014 Score=60.81 Aligned_cols=262 Identities=15% Similarity=0.028 Sum_probs=145.6
Q ss_pred CceeEEeeccccceEeeeeccccc--ccee---EEEEc-CCCC-EEEEee------CCCcEEEEeCCCceeeeeecCCc-
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSIL--FGAT---SVDFS-VSGR-LLFAGY------NDYTINVWDSLKCCRVNHLMGHE- 68 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~--~~i~---~~~~~-~~g~-~l~tg~------~dg~v~iwd~~~~~~~~~~~~h~- 68 (304)
++++.-+|..+++++=..+..... ..+. .+.=. .+|+ .++.++ .+|.|.-+|..+|+.+=......
T Consensus 126 dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~ 205 (582)
T 1flg_A 126 DASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEG 205 (582)
T ss_dssp TTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTT
T ss_pred CCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcc
Confidence 577888999999886444332211 1111 12111 1233 566654 37899999998886542221100
Q ss_pred ---------------------------------------CcE-EEEEECCCCCeEEEEeC--------------------
Q psy4754 69 ---------------------------------------NRV-SCLQVSPDGTAFSSGSW-------------------- 88 (304)
Q Consensus 69 ---------------------------------------~~V-~~l~~s~d~~~l~sgs~-------------------- 88 (304)
..+ ...++.|+...++.+..
T Consensus 206 ~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~ 285 (582)
T 1flg_A 206 HMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDY 285 (582)
T ss_dssp CEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTC
T ss_pred ccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCccccc
Confidence 000 12455566666665542
Q ss_pred C----CceEEEEeeeCCCeeEeEEecccee---e-ce-eeeEEc---CCCC---EEEEEeCCCeEEEecCCccccceecc
Q psy4754 89 D----TTLRCRLFDLRADKEVACYKKDSIL---F-GA-TSVDFS---VSGR---LLFAGYNDYTINVWDSLKCCRVNHLM 153 (304)
Q Consensus 89 D----~~i~~~~wd~~~~~~~~~~~~~~~~---~-~~-~~~~~s---~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~ 153 (304)
| +. +.-+|..+++....++..... + .. ..+.+. .+++ .++.++.+|.+.++|..+++.+-.+.
T Consensus 286 d~~~~~~--v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 363 (582)
T 1flg_A 286 DSLYTSG--QVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP 363 (582)
T ss_dssp CCTTCSE--EEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCcccce--EEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence 2 34 467888899888877642110 0 00 112222 4563 67888999999999988876553321
Q ss_pred Ccc------------c-c--------------------------------eeEEEEcCCCcEEEEeec------------
Q psy4754 154 GHE------------N-R--------------------------------VSCLQVSPDGTAFSSGSW------------ 176 (304)
Q Consensus 154 ~h~------------~-~--------------------------------v~~v~~sp~~~~las~s~------------ 176 (304)
... . + -..++++|+...+.....
T Consensus 364 ~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~ 443 (582)
T 1flg_A 364 FVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVS 443 (582)
T ss_dssp SSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCC
T ss_pred cccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeeccccc
Confidence 110 0 0 013466776555544332
Q ss_pred ---------------------CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q psy4754 177 ---------------------DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC 235 (304)
Q Consensus 177 ---------------------d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~ 235 (304)
++. +.-||+.+++.+=...... +...-.....+.+++.|+.|+.++.||..+++
T Consensus 444 ~~~g~~~~g~~~~~~p~~~~~~G~--l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 444 YTKGSAYLGMGFRIKRMYDDHVGS--LRAMDPVSGKVVWEHKEHL---PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp CCTTSCCCCEEEEEEESCSSCSEE--EEEECTTTCCEEEEEEESS---CCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccCCCceeccceeecCCCCCCcce--EEEEECCCCCEEEEecCCC---CCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence 233 3567877776543332221 11111122346788889999999999999999
Q ss_pred eeEEeeccccce-EEEEEccCCCEEEEeec--CCeeeec
Q psy4754 236 RVNHLMGHENRV-SCLQVSPDGTAFSSGSW--DTTLRDE 271 (304)
Q Consensus 236 ~~~~~~~h~~~i-~~l~~sp~g~~lasgs~--D~~i~~~ 271 (304)
++-++....+.+ .-+.|..+|+.++.... .+.+-+|
T Consensus 519 ~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G~gg~~~~~ 557 (582)
T 1flg_A 519 ELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLW 557 (582)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHH
T ss_pred EEEEecCCCCcccCceEEEECCEEEEEEEccCCCccccc
Confidence 998887543221 23677788875554332 2444455
No 279
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.12 E-value=0.0028 Score=53.39 Aligned_cols=210 Identities=10% Similarity=0.079 Sum_probs=113.7
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCC--cEEEEeCCCceeeeeec-CCcCcEEEEEECC
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY--TINVWDSLKCCRVNHLM-GHENRVSCLQVSP 78 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg--~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~ 78 (304)
..++|..||..++. ...+.. ......+++.++|+++++..... .|..++..+++...... .....-..++..+
T Consensus 51 ~~~~I~~~d~~g~~-~~~~~~---~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~ 126 (306)
T 2p4o_A 51 EVGEIVSITPDGNQ-QIHATV---EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS 126 (306)
T ss_dssp TTTEEEEECTTCCE-EEEEEC---SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS
T ss_pred CCCeEEEECCCCce-EEEEeC---CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC
Confidence 45678888877642 222222 22478899999999776654332 46667777765432211 1112233455566
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCe-eEeEEec-------cceeeceeeeEEcCCCCEEEEEe-CCCeEEEecCCc-ccc
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADK-EVACYKK-------DSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLK-CCR 148 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~-~~~~~~~-------~~~~~~~~~~~~s~~~~~l~sg~-~dg~i~iwd~~~-~~~ 148 (304)
++..+++-..++. ++.+|....+ .+..... .......+.+ +++++.++.+. ..+.|..+|... +..
T Consensus 127 ~~~~~v~d~~~g~--i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~ 202 (306)
T 2p4o_A 127 DTQYLTADSYRGA--IWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP 202 (306)
T ss_dssp SSEEEEEETTTTE--EEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB
T ss_pred CCcEEEEECCCCe--EEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC
Confidence 6655665544555 3566655432 1111110 0111122344 78887776654 468999998754 211
Q ss_pred --ceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEc---CCCCEEEEEeCC
Q psy4754 149 --VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS---VSGRLLFAGYND 223 (304)
Q Consensus 149 --~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s---~~g~~l~sg~~d 223 (304)
...+. .......++++++|+++++....+.| ..+|.. ++.............+++++|. |++..|......
T Consensus 203 ~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V--~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 203 GEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSV--VRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCE--EEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeE--EEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 11111 11346778999999887776666665 567764 3332211111111346889998 887766665543
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.08 E-value=0.003 Score=51.90 Aligned_cols=198 Identities=12% Similarity=0.053 Sum_probs=121.2
Q ss_pred cceeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeecC-CcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 27 FGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMG-HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 27 ~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
..+..+++.|++. +++....++.|...|.. ++.++.+.- -..-...|++.+++.++++.-.+.. +.++++.....
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~--l~~~~v~~~~~ 103 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYA--IYVISLTPNSE 103 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTE--EEEEEECTTCC
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCc--EEEEEcCCCCe
Confidence 3589999999765 55567788999999997 777766531 1244678888888877776544555 35677655443
Q ss_pred E---eEEec----cceeeceeeeEEcCCCCEEEEEeCCCeEEEecCC---ccccceec-------cCcccceeEEEEcCC
Q psy4754 105 V---ACYKK----DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL---KCCRVNHL-------MGHENRVSCLQVSPD 167 (304)
Q Consensus 105 ~---~~~~~----~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~---~~~~~~~~-------~~h~~~v~~v~~sp~ 167 (304)
+ ...+. .....+.-.++++|.++.|+++.......+|... ....+... ..+...+.+++++|.
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~ 183 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ 183 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence 2 22211 0111234588999998888777665555555432 11111111 112345789999998
Q ss_pred CcEEEEeecCCceEEEEeeecCCceEEEeecCc-------eeeeeeEEEEcCCCCEEEEEeCCCcEEEEe
Q psy4754 168 GTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-------ILFGATSVDFSVSGRLLFAGYNDYTINVWD 230 (304)
Q Consensus 168 ~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd 230 (304)
...+..-|.++.. +..+|... +.+..+.... .......++|.++|+++++ ++.+-++.|.
T Consensus 184 tg~lliLS~~s~~-L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 184 KNTLLVLSHESRA-LQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp TTEEEEEETTTTE-EEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred CCeEEEEECCCCe-EEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 7777766766654 45677654 4444443221 1124678999999997777 4455555553
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=0.00016 Score=64.53 Aligned_cols=153 Identities=11% Similarity=0.051 Sum_probs=96.0
Q ss_pred eeeeEEcC-CCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-CCce--EEEEeeecCCce
Q psy4754 117 ATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTL--RCRLFDLRADKE 192 (304)
Q Consensus 117 ~~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i--~i~~~d~~~~~~ 192 (304)
...++++| ++..|+.+...+.|+.+|+.+.. +..+.........|+++++++.+..+.. ++.+ .+..++. .+..
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~ 216 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF 216 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence 45788898 46667776666889999976543 3333334456889999999985554443 2221 1222332 2221
Q ss_pred E--EEeecCceeeeeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCceeeEEee-ccccceEEEEEccCCC-EEEEeecCCe
Q psy4754 193 V--ACYKKDSILFGATSVDFSV-SGRLLFAGYNDYTINVWDSLKCCRVNHLM-GHENRVSCLQVSPDGT-AFSSGSWDTT 267 (304)
Q Consensus 193 ~--~~~~~~~~~~~~~~~~~s~-~g~~l~sg~~d~~i~iwd~~~~~~~~~~~-~h~~~i~~l~~sp~g~-~lasgs~D~~ 267 (304)
. ..+.. ...+..++++| +|.++++-...+.|..++...+....... +.......|+|+|+|+ .+++-.....
T Consensus 217 ~~~~~l~~---~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 217 KVITELTK---GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp CSEEEEEE---CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred eeeeeecc---CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 1 12211 12356788999 78888777777899999987654322111 1224568899999999 6667677788
Q ss_pred eeecccc
Q psy4754 268 LRDEESK 274 (304)
Q Consensus 268 i~~~~~~ 274 (304)
|..++++
T Consensus 294 I~~~~~d 300 (430)
T 3tc9_A 294 ILRSDYD 300 (430)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 8887654
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.01 E-value=0.002 Score=57.39 Aligned_cols=218 Identities=10% Similarity=0.056 Sum_probs=116.3
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC---Cc-EEEEeCCCcee-eeeecCCcCcEEEEEECC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND---YT-INVWDSLKCCR-VNHLMGHENRVSCLQVSP 78 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d---g~-v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~ 78 (304)
+.|+.+|+.+++...... .......++|+++|.++++-... .. +...+...+.. ...+. .-..-..+++.|
T Consensus 162 ~~I~~id~~~g~v~~~~~---~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~ 237 (433)
T 4hw6_A 162 DAFRHVDFVNQYVDIKTT---NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHP 237 (433)
T ss_dssp SCEEEEETTTTEEEEECC---CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECT
T ss_pred CCEEEEECCCCEEEEeec---CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeC
Confidence 468888888776543322 22347899999999955554321 11 33333221110 01111 122334678898
Q ss_pred -CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEe-CCCeEEEecCC--cccc--ceec
Q psy4754 79 -DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSL--KCCR--VNHL 152 (304)
Q Consensus 79 -d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~-~dg~i~iwd~~--~~~~--~~~~ 152 (304)
+++++++-..++. ++.+|..++.....+...........++|+|++++|+.+. ..+.|..++.. +... ...+
T Consensus 238 ~~G~lyv~d~~~~~--V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ 315 (433)
T 4hw6_A 238 QNGKIYYTRYHHAM--ISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIV 315 (433)
T ss_dssp TTCCEEECBTTCSE--EEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEE
T ss_pred CCCeEEEEECCCCE--EEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEE
Confidence 6666666555554 4567766444312211111111123589999999666654 46889997643 2211 1111
Q ss_pred cC---------------cccceeEEEE---------cCCCcEEEEeecCCceEEEEeeecCCceEEEeecC---------
Q psy4754 153 MG---------------HENRVSCLQV---------SPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD--------- 199 (304)
Q Consensus 153 ~~---------------h~~~v~~v~~---------sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~--------- 199 (304)
.+ .-.....+++ .+++.++++-...+.| +.++. .+.. ..+-..
T Consensus 316 ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I--~~~~~-~G~v-~t~~G~g~~~~~G~~ 391 (433)
T 4hw6_A 316 CGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV--RVLTP-EGRV-TTYAGRGNSREWGYV 391 (433)
T ss_dssp EECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE--EEECT-TSEE-EEEECCCTTCSSCCB
T ss_pred EecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE--EEECC-CCCE-EEEEeCCCCCccccC
Confidence 11 1124667899 7777777665555554 56664 3332 222111
Q ss_pred -------ceeeeeeEEEEc-CCCCEEEEEeCCCcEEEEeC
Q psy4754 200 -------SILFGATSVDFS-VSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 200 -------~~~~~~~~~~~s-~~g~~l~sg~~d~~i~iwd~ 231 (304)
.....+..+++. ++|.++++=...+.|+.+++
T Consensus 392 dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 392 DGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp CEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 012236788888 66777766555667777664
No 283
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.97 E-value=0.0046 Score=52.98 Aligned_cols=197 Identities=8% Similarity=0.108 Sum_probs=114.9
Q ss_pred CCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECC----CCCe--EEEEeCCC--ceEEEEeeeC-CCeeEeEE
Q psy4754 38 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP----DGTA--FSSGSWDT--TLRCRLFDLR-ADKEVACY 108 (304)
Q Consensus 38 g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~----d~~~--l~sgs~D~--~i~~~~wd~~-~~~~~~~~ 108 (304)
..++++....+.+.+||+ +|+.+..+.. +.+..+...| .|+. |+.++.-. .-++.++++. ....+..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 356666677889999999 7888877753 3444444444 2322 33333221 2335788773 22233333
Q ss_pred ec---c--ceeeceeeeEE--cCC-CC-EEEEEeCCCeEEEecCC-------ccccceeccCcccceeEEEEcCCCcEEE
Q psy4754 109 KK---D--SILFGATSVDF--SVS-GR-LLFAGYNDYTINVWDSL-------KCCRVNHLMGHENRVSCLQVSPDGTAFS 172 (304)
Q Consensus 109 ~~---~--~~~~~~~~~~~--s~~-~~-~l~sg~~dg~i~iwd~~-------~~~~~~~~~~h~~~v~~v~~sp~~~~la 172 (304)
.. . .....+-.+++ ++. +. +++....+|.+..|++. +.+.++++.- ...+..+...+....|.
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence 11 0 00112223444 564 43 67778888999999873 3344555432 35788889998888888
Q ss_pred EeecCCceEEEEeeec-----CCceEEEeecCceeeeeeEEEE--cCCCC-EEEEEe-CCCcEEEEeCC-CceeeEEe
Q psy4754 173 SGSWDTTLRCRLFDLR-----ADKEVACYKKDSILFGATSVDF--SVSGR-LLFAGY-NDYTINVWDSL-KCCRVNHL 240 (304)
Q Consensus 173 s~s~d~~i~i~~~d~~-----~~~~~~~~~~~~~~~~~~~~~~--s~~g~-~l~sg~-~d~~i~iwd~~-~~~~~~~~ 240 (304)
.+-.|.- ||.++.+ +.+.+..+........+..+++ .++++ +|++.+ .+.+..+||.. +.+.+..+
T Consensus 196 v~eEd~G--Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 196 IAEEDEA--IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEETTTE--EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred Eecccce--EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 8887754 5677755 2334444332322224566666 56666 666666 55689999986 55555555
No 284
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=0.015 Score=55.63 Aligned_cols=222 Identities=14% Similarity=0.133 Sum_probs=129.6
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeee---cCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCee
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL---MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKE 104 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~---~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~ 104 (304)
.|.++...++|.+. .|..++-+..||..++....-. ......|.++...+++++.+ |..++-+ ..+|..+++.
T Consensus 364 ~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl--~~~~~~~~~~ 439 (781)
T 3v9f_A 364 VVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNI--SYYNTRLKKF 439 (781)
T ss_dssp CEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEE--EEECSSSCEE
T ss_pred ceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCE--EEEcCCCCcE
Confidence 38888888877755 5555667999998765432211 12346799999888777655 5544443 4567654432
Q ss_pred EeEEecc-ceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccC-----cccceeEEEEcCCCcEEEEeecCC
Q psy4754 105 VACYKKD-SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-----HENRVSCLQVSPDGTAFSSGSWDT 178 (304)
Q Consensus 105 ~~~~~~~-~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~v~~sp~~~~las~s~d~ 178 (304)
..+... .....+.++...+++. +..|+. +.+..+|..+.+....... ....|.++...++|++.+.....+
T Consensus 440 -~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G 516 (781)
T 3v9f_A 440 -QIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG 516 (781)
T ss_dssp -EECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC
T ss_pred -EEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC
Confidence 222211 0112345666666665 445555 6788888665432111111 135789999999887655433344
Q ss_pred ceEEEEeeecCCceEEEeecCc--eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeec----cccceEEEEE
Q psy4754 179 TLRCRLFDLRADKEVACYKKDS--ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG----HENRVSCLQV 252 (304)
Q Consensus 179 ~i~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~----h~~~i~~l~~ 252 (304)
+ ..+|..+.+ ...+.... ....+.++...++|.+.++.. +|-+..||..+++ ...+.. ....|.++..
T Consensus 517 -l--~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~-~~~~~~~~gl~~~~i~~i~~ 590 (781)
T 3v9f_A 517 -V--GIYTPDMQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD-YQVFQRKEGLPNTHIRAISE 590 (781)
T ss_dssp -E--EEECTTCCE-EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC-CEEECGGGTCSCCCCCEEEE
T ss_pred -E--EEEeCCCCe-EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc-EEEccccCCCCCceEEEEEE
Confidence 3 467766543 23332111 112467888888898766544 5554888876653 333322 1246889999
Q ss_pred ccCCCEEEEe
Q psy4754 253 SPDGTAFSSG 262 (304)
Q Consensus 253 sp~g~~lasg 262 (304)
.++|...+++
T Consensus 591 d~~g~lW~~t 600 (781)
T 3v9f_A 591 DKNGNIWAST 600 (781)
T ss_dssp CSSSCEEEEC
T ss_pred CCCCCEEEEc
Confidence 9998877765
No 285
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.94 E-value=0.004 Score=53.77 Aligned_cols=221 Identities=11% Similarity=0.126 Sum_probs=118.6
Q ss_pred cceeEEEEcCCCCEEEEee------------CCCcEEEEeCCCc--e--eeeeecC-----CcCcEEEEEECC--CCC-e
Q psy4754 27 FGATSVDFSVSGRLLFAGY------------NDYTINVWDSLKC--C--RVNHLMG-----HENRVSCLQVSP--DGT-A 82 (304)
Q Consensus 27 ~~i~~~~~~~~g~~l~tg~------------~dg~v~iwd~~~~--~--~~~~~~~-----h~~~V~~l~~s~--d~~-~ 82 (304)
++.-.++..|+|..+++++ .+|.|.++|+.+. + .+. +.+ ..-..-.+.+.+ +++ +
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 3455677788876655542 7999999998732 2 221 222 112345666655 454 3
Q ss_pred EEEE-eC--CCceEEEEeeeCC--Cee--EeEEeccceeeceeeeEEcCCCCEEEEEe-----------------CCCeE
Q psy4754 83 FSSG-SW--DTTLRCRLFDLRA--DKE--VACYKKDSILFGATSVDFSVSGRLLFAGY-----------------NDYTI 138 (304)
Q Consensus 83 l~sg-s~--D~~i~~~~wd~~~--~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~sg~-----------------~dg~i 138 (304)
|+.+ .. +.++ .+|++.. ... +..+... .....+.+.+.++|.+.++.. ..|.|
T Consensus 129 L~Vvnh~~~~s~i--elf~~d~~~~~~~~~~~~~g~-~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 129 LLVVNHPGSSSTV--EVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp EEEEECSTTCCEE--EEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred EEEEECCCCCCeE--EEEEEECCCCEEEEEeccccC-CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEE
Confidence 4333 22 3344 4555543 222 1222221 223457888889888666643 13566
Q ss_pred EEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCce---EEEeecCceeeeeeEEEEcC-C
Q psy4754 139 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKE---VACYKKDSILFGATSVDFSV-S 213 (304)
Q Consensus 139 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~s~-~ 213 (304)
..+|..+ +..+...-...+.++|+||++.+..+.. .+. |+.|++..... ...+.. ...+-.+++.+ +
T Consensus 206 yr~d~~~---~~~~~~~l~~pNGia~spDg~~lYvadt~~~~--I~~~~~~~~g~l~~~~~~~~---~g~PDGi~vD~e~ 277 (355)
T 3sre_A 206 TYYSPND---VRVVAEGFDFANGINISPDGKYVYIAELLAHK--IHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVT 277 (355)
T ss_dssp EEECTTC---CEEEEEEESSEEEEEECTTSSEEEEEEGGGTE--EEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTT
T ss_pred EEEECCe---EEEeecCCcccCcceECCCCCEEEEEeCCCCe--EEEEEECCCCcEecCEEEeC---CCCCceEEEeCCC
Confidence 6666532 2222222345789999999987765543 444 46788753221 122321 12356788999 5
Q ss_pred CCEEEEEeCC-CcEEEEeCC--CceeeEEeec---cccceEEEEEccCCCEEE
Q psy4754 214 GRLLFAGYND-YTINVWDSL--KCCRVNHLMG---HENRVSCLQVSPDGTAFS 260 (304)
Q Consensus 214 g~~l~sg~~d-~~i~iwd~~--~~~~~~~~~~---h~~~i~~l~~sp~g~~la 260 (304)
|++.+++..+ +.|..|+.. .+..+..+.. -...|.++ |..||+.|-
T Consensus 278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v-~~ddG~~l~ 329 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV-YAENGTVLQ 329 (355)
T ss_dssp CCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEE-EEECSSSCC
T ss_pred CcEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEE-EEcCCCEEE
Confidence 9988876533 455555543 2445554442 23344444 666776543
No 286
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.91 E-value=0.009 Score=51.57 Aligned_cols=229 Identities=17% Similarity=0.174 Sum_probs=117.7
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeec---CCcCcEEEEEECCC---CC-eEEEEeCCC---ceEEEEee
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM---GHENRVSCLQVSPD---GT-AFSSGSWDT---TLRCRLFD 98 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~---~h~~~V~~l~~s~d---~~-~l~sgs~D~---~i~~~~wd 98 (304)
-..++|.|+|.++++ ..+|.|++++-.+.+.+..+. ........|+++|+ +. ++++-.... .-++..++
T Consensus 33 P~~ia~~pdG~l~V~-e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~ 111 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-ERPGRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLR 111 (352)
T ss_dssp EEEEEECTTSCEEEE-ETTTEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEE
T ss_pred ceEEEEcCCCeEEEE-eCCCeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEE
Confidence 468999999996665 466999999822212222111 12346789999998 44 444433221 02234566
Q ss_pred eCCCe-----eEe-EEec-cceeeceeeeEEcCCCCEEEEEeC-------------CCeEEEecCCcc------------
Q psy4754 99 LRADK-----EVA-CYKK-DSILFGATSVDFSVSGRLLFAGYN-------------DYTINVWDSLKC------------ 146 (304)
Q Consensus 99 ~~~~~-----~~~-~~~~-~~~~~~~~~~~~s~~~~~l~sg~~-------------dg~i~iwd~~~~------------ 146 (304)
..... .+. .+.. .........++|.|++.+.++.+. .+.|..++....
T Consensus 112 ~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~ 191 (352)
T 2ism_A 112 HLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRG 191 (352)
T ss_dssp ECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTT
T ss_pred eCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCC
Confidence 55321 111 1111 111112357899999975555321 256766665421
Q ss_pred cccee-ccCcccceeEEEEcC-CCcEEEEeecCCce------EEEEeeecC----------------CceEEEeecCcee
Q psy4754 147 CRVNH-LMGHENRVSCLQVSP-DGTAFSSGSWDTTL------RCRLFDLRA----------------DKEVACYKKDSIL 202 (304)
Q Consensus 147 ~~~~~-~~~h~~~v~~v~~sp-~~~~las~s~d~~i------~i~~~d~~~----------------~~~~~~~~~~~~~ 202 (304)
..... -.+|. ....++|+| +++++++-.....+ .+.+..... ...+..+..+
T Consensus 192 ~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~--- 267 (352)
T 2ism_A 192 ARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG--- 267 (352)
T ss_dssp SCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC---
T ss_pred CCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC---
Confidence 00111 12332 356789999 67766654332221 111221110 0011111111
Q ss_pred eeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce------eeEEeeccccceEEEEEccCCCEEEEee
Q psy4754 203 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC------RVNHLMGHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~------~~~~~~~h~~~i~~l~~sp~g~~lasgs 263 (304)
.....++| .+|.++++....+.|...++.... ....+..-..++..+++.|||.++++..
T Consensus 268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 12356667 567777776666777777654321 1222322346889999999998877754
No 287
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=0.018 Score=55.09 Aligned_cols=255 Identities=13% Similarity=0.068 Sum_probs=139.5
Q ss_pred eeEEeeccccceEeeeec-----cccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeee--------------c
Q psy4754 5 HCRLFDLRADKEVACYKK-----DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL--------------M 65 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~-----~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~--------------~ 65 (304)
-+.+||..+++....... ......|.++...++|.+. .|...+-|.++|..+....... .
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 356677766543321111 1112338888888887655 4555456889998765422111 1
Q ss_pred CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEec-------cc-eeeceeeeEEcCCCCEEEEEeCCCe
Q psy4754 66 GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKK-------DS-ILFGATSVDFSVSGRLLFAGYNDYT 137 (304)
Q Consensus 66 ~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~-------~~-~~~~~~~~~~s~~~~~l~sg~~dg~ 137 (304)
.....|.++...++|++.+ |..++-+ ..++...... ..+.. .. ....+.++...+++. +..|+.++.
T Consensus 310 l~~~~v~~i~~D~~g~lWi-gt~~~Gl--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~G 384 (781)
T 3v9f_A 310 LSNASARYIFQDSFNNIWI-GTWGGGI--NFISNAPPTF-HTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGG 384 (781)
T ss_dssp BSSSCEEEEEECSSCCEEE-EEBSSCE--EEECSSCCSC-EEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSC
T ss_pred CCCCeEEEEEEeCCCCEEE-EecCCeE--EEeCCCCCcc-eeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCc
Confidence 2346799999888887544 4544443 4566554322 11211 00 011255666666665 555666677
Q ss_pred EEEecCCccccceec----cCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC-ceeeeeeEEEEcC
Q psy4754 138 INVWDSLKCCRVNHL----MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD-SILFGATSVDFSV 212 (304)
Q Consensus 138 i~iwd~~~~~~~~~~----~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~ 212 (304)
+..||..+... ..+ ......|.++...+++++.+ |+.++-+ ..+|..+.+. ..+... .....+.++...+
T Consensus 385 l~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl--~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~ 459 (781)
T 3v9f_A 385 INVFENGKRVA-IYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNI--SYYNTRLKKF-QIIELEKNELLDVRVFYEDK 459 (781)
T ss_dssp EEEEETTEEEE-ECC-----CCCSBEEEEEECTTSCEEE-EETTEEE--EEECSSSCEE-EECCSTTTCCCCEEEEEECT
T ss_pred EEEEECCCCeE-EEccCCCCCCCcceEEEEECCCCCEEE-EeccCCE--EEEcCCCCcE-EEeccCCCCCCeEEEEEECC
Confidence 88888765321 111 12335688998888887655 4544443 4677665432 222211 1113467777788
Q ss_pred CCCEEEEEeCCCcEEEEeCCCceeeEEeecc-----ccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 213 SGRLLFAGYNDYTINVWDSLKCCRVNHLMGH-----ENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 213 ~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-----~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
+|.+.+. .. +-+..||..+++........ ...|.++...++|...+....++ +..++.
T Consensus 460 ~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~ 522 (781)
T 3v9f_A 460 NKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTP 522 (781)
T ss_dssp TSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECT
T ss_pred CCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeC
Confidence 8876554 44 56888987765432221111 36799999999888765443244 444544
No 288
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.90 E-value=0.0021 Score=54.66 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=97.1
Q ss_pred eeEEcCCCCEEEEEe-CCCeEEEecCCccccce-eccC----c--ccceeEEEE---cCCCcEEEEeec-----------
Q psy4754 119 SVDFSVSGRLLFAGY-NDYTINVWDSLKCCRVN-HLMG----H--ENRVSCLQV---SPDGTAFSSGSW----------- 176 (304)
Q Consensus 119 ~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~-~~~~----h--~~~v~~v~~---sp~~~~las~s~----------- 176 (304)
+.+|++....|+.++ ..+.|..||...+.... .+.+ . ...+..|.+ .|+++++++...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 577877655665555 78999999976443222 2221 1 113578999 688877775321
Q ss_pred --CCceEEEEeeec---CCceEEEeecC----c-------eeeeeeEEEEcCCCCEEEEEeCC-CcEEEEeCCCceeeEE
Q psy4754 177 --DTTLRCRLFDLR---ADKEVACYKKD----S-------ILFGATSVDFSVSGRLLFAGYND-YTINVWDSLKCCRVNH 239 (304)
Q Consensus 177 --d~~i~i~~~d~~---~~~~~~~~~~~----~-------~~~~~~~~~~s~~g~~l~sg~~d-~~i~iwd~~~~~~~~~ 239 (304)
+.. +..+|+. +++.+...... . ....++.++..++|+.+++++.. +.|...+.... .+..
T Consensus 97 ~g~~~--v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~ 173 (334)
T 2p9w_A 97 HGASS--FHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVST 173 (334)
T ss_dssp SSCCE--EEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred CCCCE--EEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence 344 4578988 55554332211 0 12347899999999999998877 77777765432 3332
Q ss_pred eecc------ccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 240 LMGH------ENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 240 ~~~h------~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
+... .-..+.|++.|+|..|+....++.|.-+|...
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 2211 11256899999998777765588887777653
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.89 E-value=0.0087 Score=51.01 Aligned_cols=227 Identities=10% Similarity=-0.013 Sum_probs=118.7
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce---eeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeC-CCe
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLR-ADK 103 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~---~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~-~~~ 103 (304)
.+.++.|.+ +..++. +.+|.|.. ....|+ .+.....+.+.+..+.+.++++.++.+ .++.+ .+-.|-. +.+
T Consensus 81 ~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v-~~S~DgG~tW~ 155 (327)
T 2xbg_A 81 RFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI-YRTKDSGKNWQ 155 (327)
T ss_dssp EEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE-EEESSTTSSEE
T ss_pred cEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE-EEEcCCCCCCE
Confidence 478888876 444444 45665443 322232 222111233557788887777666655 35554 2444422 122
Q ss_pred eEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecC--CccccceeccCcccceeEEEEcCCCcEEEEeecCCceE
Q psy4754 104 EVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS--LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~ 181 (304)
.+. .. ....+..+.+.+++.+++.+...+..+-+|. .+.+.+. ......+..+.+.|+++.++. +.++.+
T Consensus 156 ~~~--~~--~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~- 227 (327)
T 2xbg_A 156 ALV--QE--AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKI- 227 (327)
T ss_dssp EEE--CS--CCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEE-
T ss_pred Eee--cC--CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceE-
Confidence 221 11 1113457788888887776655555555553 3333332 234457888999999876654 446653
Q ss_pred EEEeeecCCceEEEeecC--ceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee---ccccceEEEEEccCC
Q psy4754 182 CRLFDLRADKEVACYKKD--SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM---GHENRVSCLQVSPDG 256 (304)
Q Consensus 182 i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~---~h~~~i~~l~~sp~g 256 (304)
+..+...++.-...... .....+..+++.+++..++++. ++.+. +....++.-..+. .+...+.++.|.+++
T Consensus 228 -~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~ 304 (327)
T 2xbg_A 228 -AFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPD 304 (327)
T ss_dssp -EEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETT
T ss_pred -EEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCC
Confidence 33321112211111111 0012357888998888887765 56664 3333232222222 234578899998766
Q ss_pred CEEEEeecCCeeeec
Q psy4754 257 TAFSSGSWDTTLRDE 271 (304)
Q Consensus 257 ~~lasgs~D~~i~~~ 271 (304)
..+ .++.+++|.-+
T Consensus 305 ~~~-~~G~~G~i~~~ 318 (327)
T 2xbg_A 305 QGF-ILGQKGILLRY 318 (327)
T ss_dssp EEE-EECSTTEEEEE
T ss_pred ceE-EEcCCceEEEE
Confidence 655 44567776544
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.89 E-value=0.0086 Score=50.92 Aligned_cols=220 Identities=8% Similarity=0.045 Sum_probs=119.8
Q ss_pred CCcEEEEeCCCce-eeeeecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCCeeE-eEEeccceeeceeeeEEc
Q psy4754 47 DYTINVWDSLKCC-RVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEV-ACYKKDSILFGATSVDFS 123 (304)
Q Consensus 47 dg~v~iwd~~~~~-~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~~~~-~~~~~~~~~~~~~~~~~s 123 (304)
...|+..++.... ....+.........++|.+.++ ++.+-...+.| ..++....... ..... .......+++.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I--~r~~~~g~~~~~~~~~~--~l~~p~glavd 87 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI--KRTEFNKTESVQNVVVS--GLLSPDGLACD 87 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEE--EEEETTSSSCCCEEEEE--CCSCCCEEEEE
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcE--EEEEccCCCceEEEEcC--CCCCccEEEEE
Confidence 4578888887542 1111111223466889988544 55555555554 55666544211 11111 11124567888
Q ss_pred CCCCEEEEE-eCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec--CCceEEEEeeecCCceEEEeecCc
Q psy4754 124 VSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW--DTTLRCRLFDLRADKEVACYKKDS 200 (304)
Q Consensus 124 ~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~--d~~i~i~~~d~~~~~~~~~~~~~~ 200 (304)
+.+..++.. ...+.|.++++..................+++.|.+..+..... ... |...++........... .
T Consensus 88 ~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~--I~r~~~dG~~~~~~~~~-~ 164 (318)
T 3sov_A 88 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK--IERAGMDGSSRFIIINS-E 164 (318)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCE--EEEEETTSCSCEEEECS-S
T ss_pred cCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCE--EEEEEcCCCCeEEEEEC-C
Confidence 755555554 45688999987543221112233456789999986555444432 233 45566554322222211 1
Q ss_pred eeeeeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 201 ILFGATSVDFSVSGRLL-FAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 201 ~~~~~~~~~~s~~g~~l-~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
....+.++++|++..| ++=...+.|..+|........-..+.......+++.. +..+.+-...+.|...+...
T Consensus 165 -l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 165 -IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp -CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred -CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCC
Confidence 2345899999866554 4444567899998753222211222345567788864 45666666667777766533
No 291
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.79 E-value=0.023 Score=52.92 Aligned_cols=228 Identities=14% Similarity=0.044 Sum_probs=119.7
Q ss_pred CceeEEeeccccceEeeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeee-eecCCcCcEEEEEECCCC
Q psy4754 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDG 80 (304)
Q Consensus 3 ~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~d~ 80 (304)
.+.||..|+.+.+........ ......+++|++.+. ++.+=...+.|..+++....... .+..--.....|++.+.+
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~-~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp SSBEEEECCC---------CB-CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred cccEEEEeCCCCcceEEEEEc-CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 456888888865311111111 122368899998655 44555557889888886542212 222222567889998855
Q ss_pred C-eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC--CCeEEEecCCccccceeccCccc
Q psy4754 81 T-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHEN 157 (304)
Q Consensus 81 ~-~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h~~ 157 (304)
+ ++++-...+.| .+.++........... .......+++.|.+..++.... .+.|...++.......-....-.
T Consensus 96 ~~ly~~d~~~~~I--~v~~~dG~~~~~l~~~--~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~ 171 (619)
T 3s94_A 96 EKLYWTDSETNRI--EVSNLDGSLRKVLFWQ--ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY 171 (619)
T ss_dssp TEEEEEETTTTEE--EEEETTSCSCEEEECS--SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred CEEEEEeCCCCEE--EEEECCCCCEEEEEeC--CCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCC
Confidence 5 44454445554 5677654332222211 1224568899988777776653 35666666543222111122335
Q ss_pred ceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee
Q psy4754 158 RVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236 (304)
Q Consensus 158 ~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~ 236 (304)
....|++++++..|..+- ..+. |+.+|+........... . ...+..+++..+ ..+++-...+.|...|..+++.
T Consensus 172 ~P~Glald~~~~~LY~aD~~~~~--I~~~~~dG~~~~~~~~~-~-~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 172 WPNGLTLDYEEQKLYWADAKLNF--IHKSNLDGTNRQAVVKG-S-LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTCC--EEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred CCcEEEEEccCCEEEEEeCCCCe--EEEecCCCCccEEEEeC-C-CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 678999998765555443 3444 45677655333222211 1 122356677655 5556655677888888776654
Q ss_pred eEEe
Q psy4754 237 VNHL 240 (304)
Q Consensus 237 ~~~~ 240 (304)
...+
T Consensus 247 ~~~i 250 (619)
T 3s94_A 247 LREI 250 (619)
T ss_dssp CEEC
T ss_pred cEEE
Confidence 4433
No 292
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.78 E-value=0.01 Score=49.59 Aligned_cols=220 Identities=15% Similarity=0.147 Sum_probs=105.4
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC-----CcEEEEeCCCce-----eeeeecCCcCcEEE
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC-----RVNHLMGHENRVSC 73 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d-----g~v~iwd~~~~~-----~~~~~~~h~~~V~~ 73 (304)
+.+..||+.+++-..............++. .++.+++.|+.+ ..+.+||+.+.+ .+..+......-..
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 357889998875322111111111122222 357788888865 468999987654 22222211111222
Q ss_pred EEECCCCCeEEEEeCCCce---EEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC-----CeEEEecCCc
Q psy4754 74 LQVSPDGTAFSSGSWDTTL---RCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLK 145 (304)
Q Consensus 74 l~~s~d~~~l~sgs~D~~i---~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~ 145 (304)
+.+ +++.++.|+.++.- .+..+|..+.+-...............+. .+++.++.|+.+ ..+.+||..+
T Consensus 109 ~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 109 TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCC
Confidence 222 57777777755421 24677776544322211111111112222 256666666543 4688888765
Q ss_pred cc--cceeccCcccceeEEEEcCCCcEEEEeecCCc---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEE
Q psy4754 146 CC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 220 (304)
Q Consensus 146 ~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg 220 (304)
.+ .+..+......-..+.+ ++++++.|+.++. -.+.+||+.+.+....-...........+. -++++++.|
T Consensus 185 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~G 260 (301)
T 2vpj_A 185 GHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIA 260 (301)
T ss_dssp TEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEC
T ss_pred CcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEc
Confidence 42 22222111111122223 6778888876532 124678887765433211111111112222 266777776
Q ss_pred eCC-----CcEEEEeCCC
Q psy4754 221 YND-----YTINVWDSLK 233 (304)
Q Consensus 221 ~~d-----~~i~iwd~~~ 233 (304)
+.+ ..+.+||..+
T Consensus 261 G~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 261 GYDGNSLLSSIECYDPII 278 (301)
T ss_dssp CBCSSSBEEEEEEEETTT
T ss_pred CcCCCcccccEEEEcCCC
Confidence 644 3466777654
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.71 E-value=0.014 Score=49.58 Aligned_cols=194 Identities=10% Similarity=0.061 Sum_probs=113.7
Q ss_pred EEEEECCCCCeEEEEe-CCCceEEEEeeeCCCeeEeEEeccc------eeeceeeeEE---cCCCCEEEEEeC-------
Q psy4754 72 SCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDS------ILFGATSVDF---SVSGRLLFAGYN------- 134 (304)
Q Consensus 72 ~~l~~s~d~~~l~sgs-~D~~i~~~~wd~~~~~~~~~~~~~~------~~~~~~~~~~---s~~~~~l~sg~~------- 134 (304)
.+++|.+....|..++ ..++| ..||...+..... .... ....+..+.+ .+++.++++...
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V--~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRI--EVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEE--EEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCccCcCCCCEEEEEeccCCEE--EEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 4678877544444444 67875 5688764433222 2111 1123467888 588777665442
Q ss_pred ------CCeEEEecCC---ccccceec--cCc-----------ccceeEEEEcCCCcEEEEeecC-CceEEEEeeecCCc
Q psy4754 135 ------DYTINVWDSL---KCCRVNHL--MGH-----------ENRVSCLQVSPDGTAFSSGSWD-TTLRCRLFDLRADK 191 (304)
Q Consensus 135 ------dg~i~iwd~~---~~~~~~~~--~~h-----------~~~v~~v~~sp~~~~las~s~d-~~i~i~~~d~~~~~ 191 (304)
+..+..+|+. +++.+... ... ......++..++|+..++++.- +.| ..++....
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I--~rV~pdG~- 169 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAI--ARVSADGK- 169 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEE--EEECTTSC-
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeE--EEEeCCCC-
Confidence 6789999988 66554321 111 1247899999999999998877 664 45555433
Q ss_pred eEEEeec----CceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCcee--eEEee--cc---ccceEEE-EEccCCCE-
Q psy4754 192 EVACYKK----DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--VNHLM--GH---ENRVSCL-QVSPDGTA- 258 (304)
Q Consensus 192 ~~~~~~~----~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~--~~~~~--~h---~~~i~~l-~~sp~g~~- 258 (304)
.+..+.. .....+.+.++++|+|..|++....+.+.-+|+.+... +. .. +. -.....| ..-.+|+.
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEE
Confidence 2222211 11123457899999999999887799999999875433 22 11 21 1122332 33336766
Q ss_pred EEEeecCCeeeecc
Q psy4754 259 FSSGSWDTTLRDEE 272 (304)
Q Consensus 259 lasgs~D~~i~~~~ 272 (304)
|++.+..+.+.+..
T Consensus 249 lV~~~~~~~~~l~S 262 (334)
T 2p9w_A 249 LVGARAPYAISFRS 262 (334)
T ss_dssp EEEEETTEEEEEEC
T ss_pred EEEcCCCCEEEEEC
Confidence 55665566555443
No 294
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.71 E-value=0.019 Score=49.49 Aligned_cols=226 Identities=14% Similarity=0.152 Sum_probs=118.0
Q ss_pred EEEEEECCCCCeEEEEe------------CCCceEEEEeeeCCCe-eEeEEeccc-----eeeceeeeEEcC--CCC-EE
Q psy4754 71 VSCLQVSPDGTAFSSGS------------WDTTLRCRLFDLRADK-EVACYKKDS-----ILFGATSVDFSV--SGR-LL 129 (304)
Q Consensus 71 V~~l~~s~d~~~l~sgs------------~D~~i~~~~wd~~~~~-~~~~~~~~~-----~~~~~~~~~~s~--~~~-~l 129 (304)
...+.+.|+|..+++++ .++. +.++|..... ....+.... ..+....+.+.+ ++. +|
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~--I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGK--ILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCE--EEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCe--EEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 34566778776666552 4665 4678876321 112222111 112344555544 343 44
Q ss_pred EEE-eC--CCeEEEecCCccc----cceeccCcc-cceeEEEEcCCCcEEEEeec---C------------CceEEEEee
Q psy4754 130 FAG-YN--DYTINVWDSLKCC----RVNHLMGHE-NRVSCLQVSPDGTAFSSGSW---D------------TTLRCRLFD 186 (304)
Q Consensus 130 ~sg-~~--dg~i~iwd~~~~~----~~~~~~~h~-~~v~~v~~sp~~~~las~s~---d------------~~i~i~~~d 186 (304)
+.+ .. +..|.+|++.... .+.++.+.. ...+.+.+.++|.++++... | ..-.+..+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444 22 5678888754322 223333322 35788999999987776531 1 112223334
Q ss_pred ecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe-CCCcEEEEeCCC-cee--eEEeeccccceEEEEEcc-CCCEEEE
Q psy4754 187 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWDSLK-CCR--VNHLMGHENRVSCLQVSP-DGTAFSS 261 (304)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~-~d~~i~iwd~~~-~~~--~~~~~~h~~~i~~l~~sp-~g~~las 261 (304)
. ++...... .....+.++|+||++.|..+. ..+.|..|++.. +.. ...+ .-.+..-.+++.+ +|.+.++
T Consensus 210 ~--~~~~~~~~---~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva 283 (355)
T 3sre_A 210 P--NDVRVVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVG 283 (355)
T ss_dssp T--TCCEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEE
T ss_pred C--CeEEEeec---CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEE
Confidence 3 22211111 123468999999998766654 567899998753 221 1223 2245677899999 5998887
Q ss_pred eecC-Ceeeeccccccchhheeeccc-cCCceeEEEEEecCCccC
Q psy4754 262 GSWD-TTLRDEESKNRYMQYLLRSRI-TKPTQGLTVYFQDRGRSI 304 (304)
Q Consensus 262 gs~D-~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 304 (304)
+..+ ..|.-+++...-.....+=+. ..+...+.-.++++|++|
T Consensus 284 ~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v~~ddG~~l 328 (355)
T 3sre_A 284 CHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAENGTVL 328 (355)
T ss_dssp EESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEECSSSC
T ss_pred ecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEEEEcCCCEE
Confidence 7654 234334433111112222111 112334677788888765
No 295
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.63 E-value=0.023 Score=48.14 Aligned_cols=220 Identities=9% Similarity=0.006 Sum_probs=121.1
Q ss_pred CCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCC---eeEeEEeccceeeceeeeEE
Q psy4754 47 DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRAD---KEVACYKKDSILFGATSVDF 122 (304)
Q Consensus 47 dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~---~~~~~~~~~~~~~~~~~~~~ 122 (304)
...|+..|+.+.+....+. .-.....++|.++++ .+++-...+.| ..+++... ......-.. .......+++
T Consensus 9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I--~~~~~~g~~~~~~~~~~~~~-~~~~p~glav 84 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMI--CSTQLDRAHGVSSYDTVISR-DIQAPDGLAV 84 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEE--EEEEC--------CEEEECS-SCSCCCEEEE
T ss_pred CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcE--EEEECCCCCCCcccEEEEeC-CCCCcCEEEE
Confidence 3468888987765444333 334567899998655 44555555554 55666541 111111111 1123457888
Q ss_pred cCCCCEEEEE-eCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCce
Q psy4754 123 SVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI 201 (304)
Q Consensus 123 s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~ 201 (304)
.+.+..++.. ...+.|.+.+...................+++.|.+..+..+.....-+|...++.... ...+....
T Consensus 85 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~- 162 (316)
T 1ijq_A 85 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTEN- 162 (316)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSS-
T ss_pred eecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECC-
Confidence 8766666554 55789999987543221112223346789999986554444333321123456654322 22221111
Q ss_pred eeeeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCceeeEEee---ccccceEEEEEccCCCEEEEeecCCeeeecccc
Q psy4754 202 LFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLM---GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 274 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~sg-~~d~~i~iwd~~~~~~~~~~~---~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~ 274 (304)
....+.++++|++..|..+ ...+.|..+|.... ....+. ........|++. .+..+++-...+.|...+..
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCC
Confidence 2346889999876655444 45578999997632 222222 123445778885 46777777777778766643
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.62 E-value=0.038 Score=51.53 Aligned_cols=224 Identities=8% Similarity=0.036 Sum_probs=114.6
Q ss_pred CCCcEEEEeCCCce-eeeeecCCcCcEEEEEECCCCCeEEEEeC-CCceEEEEeeeCCCee-EeEEeccceeeceeeeEE
Q psy4754 46 NDYTINVWDSLKCC-RVNHLMGHENRVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKE-VACYKKDSILFGATSVDF 122 (304)
Q Consensus 46 ~dg~v~iwd~~~~~-~~~~~~~h~~~V~~l~~s~d~~~l~sgs~-D~~i~~~~wd~~~~~~-~~~~~~~~~~~~~~~~~~ 122 (304)
....|+.-++.... ....+...-.....++|.+.++.|+-+-. .+.| ..+++..... ...... .......+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I--~r~~~~g~~~~~~v~~~--~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI--KRTEFNKTESVQNVVVS--GLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEE--EEEEC-----CEEEECS--SCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeE--EEEEccCCCceEEEEeC--CCCCcCeEEE
Confidence 45567777776432 11112223345778999986665554333 4443 4566554321 111211 1223567889
Q ss_pred cCCCCEEEEEe-CCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCce
Q psy4754 123 SVSGRLLFAGY-NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI 201 (304)
Q Consensus 123 s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~ 201 (304)
.+.++.++.+. ..+.|.+.++.......-....-.....|++.|.+..+....+...-+|...++........... .
T Consensus 92 D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~-~- 169 (619)
T 3s94_A 92 DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS-E- 169 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS-S-
T ss_pred EecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC-C-
Confidence 88766666654 46899999876432211122334567889999965444433332222234445543322222211 1
Q ss_pred eeeeeEEEEcCCCCEEEE-EeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 202 LFGATSVDFSVSGRLLFA-GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 202 ~~~~~~~~~s~~g~~l~s-g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
...++.+++++++..|.. =...+.|...|...........+.......|++.++ ..+.+-...+.|...+...+
T Consensus 170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 234688999987555444 445577988887653332222222223356788766 66667666677776665443
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.62 E-value=0.052 Score=52.03 Aligned_cols=222 Identities=10% Similarity=-0.000 Sum_probs=121.5
Q ss_pred CCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCC----eeEeEEeccceeeceeee
Q psy4754 46 NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRAD----KEVACYKKDSILFGATSV 120 (304)
Q Consensus 46 ~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~----~~~~~~~~~~~~~~~~~~ 120 (304)
....|+..++........+ .....+..|+|.+... ++++-...+.| +.+++... .....+.. .......+
T Consensus 402 n~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I--~~~~l~g~~~~~~~~~vi~~--~l~~P~GL 476 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMI--CSTQLDRAHGVSSYDTVISR--DIQAPDGL 476 (791)
T ss_dssp CBSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEE--EEEEC--------CEEEECS--SCSCCCEE
T ss_pred cccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeE--EEEeccCCCCCcceeEEEec--CCCCccee
Confidence 4456888887655433322 3345677899988544 44554444553 45666532 11111111 12234578
Q ss_pred EEcCCCCEEEEEe-CCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecC
Q psy4754 121 DFSVSGRLLFAGY-NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD 199 (304)
Q Consensus 121 ~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~ 199 (304)
++.+.++.|+.+. ..+.|.+.++........+.........|++.|.+..|+...+...-+|...++...........
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~- 555 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE- 555 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS-
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC-
Confidence 8888776666654 46899999876433222222333468899999975444443332212245667655433322222
Q ss_pred ceeeeeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCceeeEEeec--cccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 200 SILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMG--HENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 200 ~~~~~~~~~~~s~~g~~l~sg-~~d~~i~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
. ...++.+++.+.+..|..+ .....|...++........+.. ......+|++.. +.++++-...+.|...+...
T Consensus 556 ~-l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 556 N-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp S-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred C-CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCC
Confidence 1 2346889999766555444 4456788888754333222222 223456777754 46667766667776655433
No 298
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.62 E-value=0.022 Score=47.65 Aligned_cols=221 Identities=10% Similarity=0.057 Sum_probs=106.3
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCC----CcEEEEeCCCce--eeeeecCCcCcEEEEEEC
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND----YTINVWDSLKCC--RVNHLMGHENRVSCLQVS 77 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~d----g~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s 77 (304)
+.+..||+.+++=..............++. .++.+++.|+.+ ..+.+||+.+.+ .+..+......-..+.+
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~- 100 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA- 100 (306)
T ss_dssp TSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-
T ss_pred ceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-
Confidence 468889999875322111111111122233 367788888765 678899987764 22222211111122222
Q ss_pred CCCCeEEEEeCC-C---ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC---------CCeEEEecCC
Q psy4754 78 PDGTAFSSGSWD-T---TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN---------DYTINVWDSL 144 (304)
Q Consensus 78 ~d~~~l~sgs~D-~---~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~---------dg~i~iwd~~ 144 (304)
+++.++.|+.+ + .-.+..+|..+.+-...............+. .++..++.|+. -..+.+||..
T Consensus 101 -~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 101 -EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp -TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred -CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCC
Confidence 57777777765 1 1124677876654222211111111112222 34555555542 3458888876
Q ss_pred ccc--cceeccCcccceeEEEEcCCCcEEEEeecCCc---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEE
Q psy4754 145 KCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 145 ~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s 219 (304)
+.+ .+..+......-..+.+ ++++++.|+.+.. -.+..||+.+.+-...-...........+.+ ++++++.
T Consensus 178 ~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~ 253 (306)
T 3ii7_A 178 TETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVL 253 (306)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEE
T ss_pred CCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEE
Confidence 542 22222211111122223 6778888875432 1246788776554322111111111222222 6777777
Q ss_pred EeCC-----CcEEEEeCCCc
Q psy4754 220 GYND-----YTINVWDSLKC 234 (304)
Q Consensus 220 g~~d-----~~i~iwd~~~~ 234 (304)
|+.+ ..+.+||..+.
T Consensus 254 GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 254 AGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ECBCSSSBCCEEEEEETTTT
T ss_pred eCcCCCeeeeeEEEEcCCCC
Confidence 7743 46788887653
No 299
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.60 E-value=0.023 Score=47.47 Aligned_cols=221 Identities=13% Similarity=0.178 Sum_probs=104.2
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCC-----cEEEEeCCCce--eeeeecCCcCcEEEEEE
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY-----TINVWDSLKCC--RVNHLMGHENRVSCLQV 76 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg-----~v~iwd~~~~~--~~~~~~~h~~~V~~l~~ 76 (304)
..+..||+.+++-............-.++. .++.+++.|+.++ .+.+||+.+.+ .+..+......-..+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 357888988875322111111111112222 2677888888653 58899987653 22222211111222222
Q ss_pred CCCCCeEEEEeCCCc---eEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC-------CCeEEEecCCcc
Q psy4754 77 SPDGTAFSSGSWDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-------DYTINVWDSLKC 146 (304)
Q Consensus 77 s~d~~~l~sgs~D~~---i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-------dg~i~iwd~~~~ 146 (304)
+++.++.|+.++. -.+..+|+.+.+-............ .++.. .++..++.|+. -..+.+||..+.
T Consensus 108 --~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 183 (302)
T 2xn4_A 108 --NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTN 183 (302)
T ss_dssp --TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred --CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence 5677777776542 1245677665432221111111111 12222 24555555543 245888887654
Q ss_pred c--cceeccCcccceeEEEEcCCCcEEEEeecCCc---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEe
Q psy4754 147 C--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 147 ~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~ 221 (304)
+ .+..+......-..+.+ ++++++.|+.++. -.+..||..+.+-...-...........+ ..++++++.|+
T Consensus 184 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~i~v~GG 259 (302)
T 2xn4_A 184 EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC--AVNGLLYVVGG 259 (302)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECC
T ss_pred cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE--EECCEEEEECC
Confidence 2 22222211111222223 6778888886542 12467888776543321111100111112 23667777776
Q ss_pred CCC-----cEEEEeCCCc
Q psy4754 222 NDY-----TINVWDSLKC 234 (304)
Q Consensus 222 ~d~-----~i~iwd~~~~ 234 (304)
.++ .+.+||..+.
T Consensus 260 ~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 260 DDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp BCSSSBCCCEEEEETTTT
T ss_pred cCCCcccccEEEEcCCCC
Confidence 542 4777887654
No 300
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.60 E-value=0.047 Score=50.96 Aligned_cols=225 Identities=9% Similarity=-0.014 Sum_probs=128.4
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 82 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 82 (304)
..|+..|+.+.+.....+... .....+++|++.+. ++.+-..++.|..+++........+..-......|++.+.+..
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~ 93 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKN 93 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTE
T ss_pred CcEEEEECCCCCcceEEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCE
Confidence 568888888765433323221 23478999998654 5566677899999998654322222222234567888765554
Q ss_pred E-EEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC--CCeEEEecCCccccceeccCcccce
Q psy4754 83 F-SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDSLKCCRVNHLMGHENRV 159 (304)
Q Consensus 83 l-~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~h~~~v 159 (304)
| ++-...+. |.+.++........... .......+++.|....++.... .+.|...++.... ...+...-...
T Consensus 94 LY~tD~~~~~--I~v~~~dG~~~~~l~~~--~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P 168 (628)
T 4a0p_A 94 LYWADTGTNR--IEVSKLDGQHRQVLVWK--DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRA 168 (628)
T ss_dssp EEEEETTTTE--EEEEETTSTTCEEEECS--SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSE
T ss_pred EEEEECCCCE--EEEEecCCCcEEEEEeC--CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCc
Confidence 4 44444444 45666654332222211 1234568899987777777653 4677777764332 22222334568
Q ss_pred eEEEEcCCCcEEEEee-cCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeE
Q psy4754 160 SCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 238 (304)
Q Consensus 160 ~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~ 238 (304)
..|++++++..|..+- ..+. |..+|+..... ..+... ...+..+++.. +.++++-...+.|...|..++....
T Consensus 169 ~GlalD~~~~~LY~aD~~~~~--I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 169 NGLTIDYAKRRLYWTDLDTNL--IESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT 242 (628)
T ss_dssp EEEEEETTTTEEEEEETTTTE--EEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred ceEEEccccCEEEEEECCCCE--EEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence 8999999766655544 3444 45677765433 222211 12345667655 5666666667888888866655443
Q ss_pred Ee
Q psy4754 239 HL 240 (304)
Q Consensus 239 ~~ 240 (304)
.+
T Consensus 243 ~l 244 (628)
T 4a0p_A 243 II 244 (628)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 301
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.60 E-value=0.032 Score=48.99 Aligned_cols=226 Identities=10% Similarity=0.013 Sum_probs=124.4
Q ss_pred CEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe-EEEEeCCCceEEEEeeeCCCe----eEeEEeccce
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA-FSSGSWDTTLRCRLFDLRADK----EVACYKKDSI 113 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~-l~sgs~D~~i~~~~wd~~~~~----~~~~~~~~~~ 113 (304)
.+|+.+ ....|+..++........ ......+..++|.+..+. +.+-...+.| +.+++.... ....... .
T Consensus 84 ~~ll~~-~~~~I~~i~l~~~~~~~~-~~~~~~~~~l~~d~~~~~lywsD~~~~~I--~~~~~~g~~~~~~~~~~~~~--~ 157 (400)
T 3p5b_L 84 AYLFFT-NRHEVRKMTLDRSEYTSL-IPNLRNVVALDTEVASNRIYWSDLSQRMI--CSTQLDRAHGVSSYDTVISR--D 157 (400)
T ss_dssp CEEEEE-ETTEEEEECTTSCSCEEE-ECSCSCEEEEEEETTTTEEEEEETTTTEE--EEEEC------CCCEEEECS--S
T ss_pred ceeEEe-ccceeEEEccCCcceeEe-ccccCcceEEeeeeccCceEEEecCCCeE--EEEEcccCCCCCcceEEEeC--C
Confidence 344443 346788888876543332 234466789999986554 4454445553 456665311 1111111 1
Q ss_pred eeceeeeEEcCCCCEEEEE-eCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecC--CceEEEEeeecCC
Q psy4754 114 LFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD--TTLRCRLFDLRAD 190 (304)
Q Consensus 114 ~~~~~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d--~~i~i~~~d~~~~ 190 (304)
......+++.+.+..|+.. ...+.|.+.++........+.........|++.|.+..+...... .. |...++...
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~--I~~~~~dG~ 235 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK--IKKGGLNGV 235 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC--EEEEETTSC
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE--EEEEeCCCC
Confidence 1234578888755556555 457899999876543222222233457899999965544433322 33 456666543
Q ss_pred ceEEEeecCceeeeeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCceeeEEeec--cccceEEEEEccCCCEEEEeecCCe
Q psy4754 191 KEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMG--HENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg-~~d~~i~iwd~~~~~~~~~~~~--h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
......... ...++.++++|++..|..+ ...+.|..+|............ .......|++. .+..+.+-...+.
T Consensus 236 ~~~~~~~~~--l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~ 312 (400)
T 3p5b_L 236 DIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 312 (400)
T ss_dssp SCEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS
T ss_pred ccEEEEECC--CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe
Confidence 332222221 1345889999876655554 4457899998754322222222 23455677774 4566777766677
Q ss_pred eeeccccc
Q psy4754 268 LRDEESKN 275 (304)
Q Consensus 268 i~~~~~~~ 275 (304)
|...+...
T Consensus 313 V~~~~~~~ 320 (400)
T 3p5b_L 313 IFSANRLT 320 (400)
T ss_dssp EEEEESSS
T ss_pred EEEEEcCC
Confidence 77666433
No 302
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.53 E-value=0.018 Score=48.06 Aligned_cols=220 Identities=12% Similarity=0.120 Sum_probs=104.3
Q ss_pred CCCEEEEee-CC-----CcEEEEeCCCce--eeeeecCCcCcEEEEEECCCCCeEEEEeCCCc---eEEEEeeeCCCe--
Q psy4754 37 SGRLLFAGY-ND-----YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADK-- 103 (304)
Q Consensus 37 ~g~~l~tg~-~d-----g~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~---i~~~~wd~~~~~-- 103 (304)
++.+++.|+ .+ ..+.+||+.+.+ .+..+.........+. .+++.++.|+.++. -.+..+|..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 456677777 33 478899987654 2222221111122222 35677777775531 124678876544
Q ss_pred -eEeEEeccceeeceeeeEEcCCCCEEEEEeCC-----CeEEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEee
Q psy4754 104 -EVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGS 175 (304)
Q Consensus 104 -~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s 175 (304)
-...............+. .++..++.|+.+ ..+.+||..+.+ .+..+......-..+.+ ++++++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred eeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 111111111111112222 245666666532 468888876543 22222211111122222 677888887
Q ss_pred cCCc---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCce--eeEEeecccc
Q psy4754 176 WDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMGHEN 245 (304)
Q Consensus 176 ~d~~---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-----~~i~iwd~~~~~--~~~~~~~h~~ 245 (304)
.++. -.+..||+.+.+-...-...........+. -++++++.|+.+ ..+.+||..+.+ .+..+.....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence 6542 124678877665433211111111112222 256777777653 468899987643 2222211111
Q ss_pred ceEEEEEccCCCEEEEeecCC
Q psy4754 246 RVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 246 ~i~~l~~sp~g~~lasgs~D~ 266 (304)
...++. -+++.++.|+.+.
T Consensus 246 ~~~~~~--~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 246 YVGATV--LRGRLYAIAGYDG 264 (301)
T ss_dssp SCEEEE--ETTEEEEECCBCS
T ss_pred ceeEEE--ECCEEEEEcCcCC
Confidence 222222 3678888887663
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.41 E-value=0.051 Score=46.81 Aligned_cols=229 Identities=14% Similarity=0.065 Sum_probs=121.2
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCce-eeeeec---CCcCcEEEEEECCC----CCeEEEEeC---CC--ceEEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHLM---GHENRVSCLQVSPD----GTAFSSGSW---DT--TLRCR 95 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~-~~~~~~---~h~~~V~~l~~s~d----~~~l~sgs~---D~--~i~~~ 95 (304)
-..++|.|+|.++++ ..+|.|++++. +++ .+..+. ........|+++|+ +.++++-+. ++ .-+|.
T Consensus 31 P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp EEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 578999999986655 46699999974 443 222211 12346789999997 444444432 20 02234
Q ss_pred EeeeCCC-------eeE-eEEeccceeeceeeeEEcCCCCEEEEEeC-------------CCeEEEecCCccc-------
Q psy4754 96 LFDLRAD-------KEV-ACYKKDSILFGATSVDFSVSGRLLFAGYN-------------DYTINVWDSLKCC------- 147 (304)
Q Consensus 96 ~wd~~~~-------~~~-~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-------------dg~i~iwd~~~~~------- 147 (304)
.++.... +.+ ..+.... ......+.|.||+.+.++.+. .|.|..++....-
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~-~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~ 187 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAY-IHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP 187 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCS-SCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred EEEECCCCcCcCccEEEEEcCCCCC-CcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence 5665433 111 1111111 112356899999976665322 2566666643210
Q ss_pred ccee-ccCcccceeEEEEcC-CCcEEEEeecCCc-eEEEEeeecC--------C--------ceEEEeecCceeeeeeEE
Q psy4754 148 RVNH-LMGHENRVSCLQVSP-DGTAFSSGSWDTT-LRCRLFDLRA--------D--------KEVACYKKDSILFGATSV 208 (304)
Q Consensus 148 ~~~~-~~~h~~~v~~v~~sp-~~~~las~s~d~~-i~i~~~d~~~--------~--------~~~~~~~~~~~~~~~~~~ 208 (304)
.... -.+|. ....++|+| +++++++-..... -.+.+..... + ..+..+.. ....+..+
T Consensus 188 ~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~--~~~ap~G~ 264 (354)
T 3a9g_A 188 NSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS--ETWAPSGA 264 (354)
T ss_dssp TCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT--CCCCEEEE
T ss_pred CCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC--CCcCCcce
Confidence 0011 12332 356899999 6776665432221 1111111100 0 11112200 01235677
Q ss_pred EEc-------CCCCEEEEEeCCCcEEEEeCCCc-ee--eEEee-ccccceEEEEEccCCCEEEEee
Q psy4754 209 DFS-------VSGRLLFAGYNDYTINVWDSLKC-CR--VNHLM-GHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 209 ~~s-------~~g~~l~sg~~d~~i~iwd~~~~-~~--~~~~~-~h~~~i~~l~~sp~g~~lasgs 263 (304)
+|. .+|.++++....+.|...++... .. ...+. +-..++..+++.|||.++++..
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 773 56777777767778888877642 22 12332 2246789999999998887764
No 304
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.40 E-value=0.043 Score=45.79 Aligned_cols=220 Identities=14% Similarity=0.166 Sum_probs=102.9
Q ss_pred CCCEEEEeeCC----CcEEEEeCCCcee--eeeecCCcCcEEEEEECCCCCeEEEEeCCCc---eEEEEeeeCCCeeEeE
Q psy4754 37 SGRLLFAGYND----YTINVWDSLKCCR--VNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKEVAC 107 (304)
Q Consensus 37 ~g~~l~tg~~d----g~v~iwd~~~~~~--~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~---i~~~~wd~~~~~~~~~ 107 (304)
++.+++.|+.+ ..+..||+.+.+- +..+......-..+.+ +++.++.|+.++. -.+..+|..+.+-...
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 34566677654 3688889876542 1112111111112222 5677777775532 1246777765442222
Q ss_pred EeccceeeceeeeEEcCCCCEEEEEeCC-----CeEEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEeecCCc-
Q psy4754 108 YKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT- 179 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~- 179 (304)
............+. .++..++.|+.+ ..+.+||..+.+ .+..+......-..+.+ +++.++.|+.++.
T Consensus 93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 168 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVAS 168 (302)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTT
T ss_pred CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCC
Confidence 11111111112222 245666666544 357788876543 22222211111122222 6778888775332
Q ss_pred ----eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCce--eeEEeeccccceE
Q psy4754 180 ----LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMGHENRVS 248 (304)
Q Consensus 180 ----i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-----~~i~iwd~~~~~--~~~~~~~h~~~i~ 248 (304)
-.+..||+.+.+-...-...........+. -++++++.|+.+ ..+.+||..+.+ .+..+......-.
T Consensus 169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~ 246 (302)
T 2xn4_A 169 RQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG 246 (302)
T ss_dssp TEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe
Confidence 124678887765433211111111112222 267777777653 368889987643 2222211111112
Q ss_pred EEEEccCCCEEEEeecCC
Q psy4754 249 CLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 249 ~l~~sp~g~~lasgs~D~ 266 (304)
++ ..+++.++.|+.+.
T Consensus 247 ~~--~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 247 VC--AVNGLLYVVGGDDG 262 (302)
T ss_dssp EE--EETTEEEEECCBCS
T ss_pred EE--EECCEEEEECCcCC
Confidence 22 23678888888764
No 305
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.39 E-value=0.041 Score=46.16 Aligned_cols=220 Identities=11% Similarity=0.095 Sum_probs=101.9
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeC----C-----CcEEEEeCCCce--eeeeecCCcCcEE
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN----D-----YTINVWDSLKCC--RVNHLMGHENRVS 72 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~----d-----g~v~iwd~~~~~--~~~~~~~h~~~V~ 72 (304)
+.+.+||+.+++-..............++. .++.+++.|+. + ..+.+||+.+.+ .+..+......-.
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 458889998875322111111111122222 26777788876 2 468899987653 2222221111122
Q ss_pred EEEECCCCCeEEEEeCCCc---eEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC-----CeEEEecCC
Q psy4754 73 CLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSL 144 (304)
Q Consensus 73 ~l~~s~d~~~l~sgs~D~~---i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-----g~i~iwd~~ 144 (304)
.+.+ +++.++.|+.++. -.+..+|..+.+-...............+.+ ++..++.|+.+ ..+.+||..
T Consensus 117 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 192 (308)
T 1zgk_A 117 VGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPE 192 (308)
T ss_dssp EEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred EEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCC
Confidence 2222 5677777764432 1145677765432211111111111122222 45566666543 458888876
Q ss_pred ccc--cceeccCcccceeEEEEcCCCcEEEEeecCCc---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEE
Q psy4754 145 KCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 145 ~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~s 219 (304)
+.+ .+..+......-..+.+ ++++++.|+.++. -.+..||+.+.+-...-...........+. -++++++.
T Consensus 193 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~ 268 (308)
T 1zgk_A 193 RNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVL 268 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEE
T ss_pred CCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEE
Confidence 542 22222211111222333 6778888876532 224678887765432211111001111222 25667777
Q ss_pred EeCC-----CcEEEEeCCC
Q psy4754 220 GYND-----YTINVWDSLK 233 (304)
Q Consensus 220 g~~d-----~~i~iwd~~~ 233 (304)
|+.+ ..+.+||..+
T Consensus 269 GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 269 GGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp CCBCSSCBCCEEEEEETTT
T ss_pred cCcCCCcccceEEEEcCCC
Confidence 6543 3466677654
No 306
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.35 E-value=0.05 Score=45.46 Aligned_cols=219 Identities=9% Similarity=0.108 Sum_probs=103.6
Q ss_pred CCEEEEeeC--CCcEEEEeCCCce--eeeeecCCcCcEEEEEECCCCCeEEEEeCCC--ceEEEEeeeCCCeeEeEEecc
Q psy4754 38 GRLLFAGYN--DYTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDT--TLRCRLFDLRADKEVACYKKD 111 (304)
Q Consensus 38 g~~l~tg~~--dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~--~i~~~~wd~~~~~~~~~~~~~ 111 (304)
+.+++.|+. ...+.+||+.+.+ .+..+......-..+. .+++.++.|+.+. .-.+..+|..+.+-.......
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 345566654 3678899987754 2222221111222222 2566777777551 122456777665432221111
Q ss_pred ceeeceeeeEEcCCCCEEEEEeCC------CeEEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEeecCCc----
Q psy4754 112 SILFGATSVDFSVSGRLLFAGYND------YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---- 179 (304)
Q Consensus 112 ~~~~~~~~~~~s~~~~~l~sg~~d------g~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---- 179 (304)
........+. .++..++.|+.+ ..+.+||..+.+ .+..+......-..+.+ ++++++.|+.++.
T Consensus 90 ~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 165 (306)
T 3ii7_A 90 TPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSG 165 (306)
T ss_dssp SCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTC
T ss_pred ccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcc
Confidence 1111112222 256666666544 568888876543 22222111111122222 6677777764321
Q ss_pred ---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCce--eeEEeeccccceEE
Q psy4754 180 ---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMGHENRVSC 249 (304)
Q Consensus 180 ---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-----~~i~iwd~~~~~--~~~~~~~h~~~i~~ 249 (304)
-.+..||+.+.+....-...........+.+ ++++++.|+.+ ..+.+||..+.+ .+..+........+
T Consensus 166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 166 RVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred cccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 1246788877654332111111111122222 66777776543 458889876642 22222222222233
Q ss_pred EEEccCCCEEEEeecCC
Q psy4754 250 LQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 250 l~~sp~g~~lasgs~D~ 266 (304)
+.+ ++..++.|+.++
T Consensus 244 ~~~--~~~i~v~GG~~~ 258 (306)
T 3ii7_A 244 AAV--GSIVYVLAGFQG 258 (306)
T ss_dssp EEE--TTEEEEEECBCS
T ss_pred EEE--CCEEEEEeCcCC
Confidence 333 678888888653
No 307
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.33 E-value=0.0027 Score=60.19 Aligned_cols=217 Identities=9% Similarity=0.014 Sum_probs=113.5
Q ss_pred CCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEE-eCCCceEEEEeeeCC----CeeEeEEeccceeeceeee
Q psy4754 46 NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG-SWDTTLRCRLFDLRA----DKEVACYKKDSILFGATSV 120 (304)
Q Consensus 46 ~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sg-s~D~~i~~~~wd~~~----~~~~~~~~~~~~~~~~~~~ 120 (304)
....|+..++.+.+....+.. ...+..++|.+.+..|+-. ...+.| +.+++.. ......+.. .......+
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I--~~~~~~g~~~~~~~~~~i~~--~~~~P~gl 458 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMI--CSTQLDRAHGVSSYDTVISR--DIQAPDGL 458 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSB--EEEESCCCCC-CCCCCBCCS--CC--CCCE
T ss_pred CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeE--EEEecCCCCCCcceEEEEeC--CCCCcceE
Confidence 345788888876554433322 2345678998866655543 344554 4566653 111111110 11123467
Q ss_pred EEcCCCCEEEEE-eCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-C-CceEEEEeeecCCceEEEee
Q psy4754 121 DFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW-D-TTLRCRLFDLRADKEVACYK 197 (304)
Q Consensus 121 ~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-d-~~i~i~~~d~~~~~~~~~~~ 197 (304)
++.+.+..|+.+ ...+.|.+.++........+.........++++|.+..|+.... . +. |..+++...... .+.
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~--I~~~~~dG~~~~-~l~ 535 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAK--IKKGGLNGVDIY-SLV 535 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCC--EEBCCSSSCCCC-EES
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCe--EEEEeCCCCCee-EEE
Confidence 777555555544 45688999987643322112222345678899986554443332 2 34 345555432221 111
Q ss_pred cCceeeeeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCceeeEEee---ccccceEEEEEccCCCEEEEeecCCeeeeccc
Q psy4754 198 KDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVNHLM---GHENRVSCLQVSPDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 198 ~~~~~~~~~~~~~s~~g-~~l~sg~~d~~i~iwd~~~~~~~~~~~---~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~ 273 (304)
... ....+.++++|++ .++++-...+.|..+++.... ...+. +.......|++..+ ..+++....+.|...+.
T Consensus 536 ~~~-l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 536 TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp CSS-CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred eCC-CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 111 1235789999875 455555566789999875432 22222 12233456677654 56666666677776664
No 308
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.25 E-value=0.097 Score=47.16 Aligned_cols=198 Identities=10% Similarity=0.040 Sum_probs=108.6
Q ss_pred EEEEEECC-CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc-eeeceeeeEE-------cCCCCEEEEEeCCC-----
Q psy4754 71 VSCLQVSP-DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-ILFGATSVDF-------SVSGRLLFAGYNDY----- 136 (304)
Q Consensus 71 V~~l~~s~-d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~-~~~~~~~~~~-------s~~~~~l~sg~~dg----- 136 (304)
-..|+|.| ++..|+.+..+. -.+++.|+............. .......++| +++++.++.+...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~-~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGH-KAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETE-EEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCC-CeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 45789998 455555554432 235778877655443332211 1113567889 99999777766554
Q ss_pred --eEEEecCCc-cccc-----eeccCcccceeEEEEcCC-CcEEEEeecCCceEEEEeeec-------CCce--------
Q psy4754 137 --TINVWDSLK-CCRV-----NHLMGHENRVSCLQVSPD-GTAFSSGSWDTTLRCRLFDLR-------ADKE-------- 192 (304)
Q Consensus 137 --~i~iwd~~~-~~~~-----~~~~~h~~~v~~v~~sp~-~~~las~s~d~~i~i~~~d~~-------~~~~-------- 192 (304)
.|.+.+... +... ..+... .....++++|+ +.++++-..++.+ ..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V--~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQV--FRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEE--EEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEE--EEEecccccccccCceeeccccccc
Confidence 255665322 1111 111111 23467889995 5555555556654 678876 3332
Q ss_pred ---E-EEeecCceeeeeeEEEEcCCCCE-EEEEeCCCcEEEEeC--CCcee--eEEeecc---c------------cceE
Q psy4754 193 ---V-ACYKKDSILFGATSVDFSVSGRL-LFAGYNDYTINVWDS--LKCCR--VNHLMGH---E------------NRVS 248 (304)
Q Consensus 193 ---~-~~~~~~~~~~~~~~~~~s~~g~~-l~sg~~d~~i~iwd~--~~~~~--~~~~~~h---~------------~~i~ 248 (304)
. ..+.... ......++|+|+|++ +++=...+.|+.++. ..+.. ...+.+. . ....
T Consensus 297 ~g~~~~l~~~~~-~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 297 PNTFKQLFTIAD-PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TTTEEEEEECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred ccccceeEecCC-CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 1 1111111 112468999999995 444445677888553 33221 0222221 1 1234
Q ss_pred -EEEEc-------cCCCEEEEeecCCeeeeccc
Q psy4754 249 -CLQVS-------PDGTAFSSGSWDTTLRDEES 273 (304)
Q Consensus 249 -~l~~s-------p~g~~lasgs~D~~i~~~~~ 273 (304)
.++.. ++|.++++-+....||.++.
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 45554 56788888888889998874
No 309
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.24 E-value=0.13 Score=47.97 Aligned_cols=222 Identities=9% Similarity=-0.022 Sum_probs=125.2
Q ss_pred CCCcEEEEeCCCceeeeeec-CCcCcEEEEEECCCCCeE-EEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeEEc
Q psy4754 46 NDYTINVWDSLKCCRVNHLM-GHENRVSCLQVSPDGTAF-SSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFS 123 (304)
Q Consensus 46 ~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~d~~~l-~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s 123 (304)
....|+.-++.+......+. ..-..+..|+|.+.+..| .+-..++.| ..+++............ ......+++.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I--~r~~~~g~~~~~v~~~g--~~~P~GlAvD 88 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTI--SRAFMNGSALEHVVEFG--LDYPEGMAVD 88 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEE--EEEETTSCSCEEEECSS--CSCCCEEEEE
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeE--EEEECCCCCcEEEEeCC--CCCcceEEEE
Confidence 56678888887543222221 123457799999865554 454455554 45665543222222211 1234578888
Q ss_pred CCCCEEEEEe-CCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeeecCCceEEEeecCcee
Q psy4754 124 VSGRLLFAGY-NDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSIL 202 (304)
Q Consensus 124 ~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~~ 202 (304)
+.+..|+.+. ..+.|.+.++.......-....-.....|++.|....|.-..+...-+|...++........... .
T Consensus 89 ~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~---~ 165 (628)
T 4a0p_A 89 WLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN---V 165 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS---C
T ss_pred eCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECC---C
Confidence 7766666654 46889998875432211112333567899999854444433332122345566554433222221 2
Q ss_pred eeeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeeeecccccc
Q psy4754 203 FGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 276 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~sg-~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~~ 276 (304)
..++.+++++++..|..+ ...+.|..+|+..... ..+.........|++.. +..+.|-...+.|...+...+
T Consensus 166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 346889999976655554 4557798888754332 23333344556888875 567777766777776664443
No 310
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.23 E-value=0.084 Score=45.43 Aligned_cols=228 Identities=12% Similarity=0.106 Sum_probs=117.6
Q ss_pred eeEEEEcCCCC-EEEEeeCCCcEEEEeCCCceee---eee----cCCcCcEEEEEECCC----CCeEEEEeC---CC--c
Q psy4754 29 ATSVDFSVSGR-LLFAGYNDYTINVWDSLKCCRV---NHL----MGHENRVSCLQVSPD----GTAFSSGSW---DT--T 91 (304)
Q Consensus 29 i~~~~~~~~g~-~l~tg~~dg~v~iwd~~~~~~~---~~~----~~h~~~V~~l~~s~d----~~~l~sgs~---D~--~ 91 (304)
-..++|.|+|+ ++++ ...|.|++++.. +... ..+ .........++++|+ +.+.++-+. ++ .
T Consensus 20 P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 20 PWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp EEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred cEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 57899999999 6654 467999999864 3221 111 112345689999995 444444332 11 2
Q ss_pred eEEEEeeeCCC----eeEe-EEeccc----eeeceeeeEEcCCCCEEEEEeC-------------CCeEEEecCCccc--
Q psy4754 92 LRCRLFDLRAD----KEVA-CYKKDS----ILFGATSVDFSVSGRLLFAGYN-------------DYTINVWDSLKCC-- 147 (304)
Q Consensus 92 i~~~~wd~~~~----~~~~-~~~~~~----~~~~~~~~~~s~~~~~l~sg~~-------------dg~i~iwd~~~~~-- 147 (304)
-++.-+++... .... .+.... .......+.|.||+.+.++.+. .|.|..+|....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 22344555322 1111 111100 0111357899999965444322 2467666654210
Q ss_pred ----------cceec-cCcccceeEEEEcC-CCcEEEEeec-CCceEEEEee--------ecCC----------------
Q psy4754 148 ----------RVNHL-MGHENRVSCLQVSP-DGTAFSSGSW-DTTLRCRLFD--------LRAD---------------- 190 (304)
Q Consensus 148 ----------~~~~~-~~h~~~v~~v~~sp-~~~~las~s~-d~~i~i~~~d--------~~~~---------------- 190 (304)
....+ .+|. ....++|+| +++++++-.. ++.-.+.+.. ....
T Consensus 178 ~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 11111 2332 367899999 6766654332 1111111111 0000
Q ss_pred -----ceEEEeecCceeeeeeEEEEcC-------CCCEEEEEeCCCcEEEEeCCCceeeEE--ee-ccccceEEEEEccC
Q psy4754 191 -----KEVACYKKDSILFGATSVDFSV-------SGRLLFAGYNDYTINVWDSLKCCRVNH--LM-GHENRVSCLQVSPD 255 (304)
Q Consensus 191 -----~~~~~~~~~~~~~~~~~~~~s~-------~g~~l~sg~~d~~i~iwd~~~~~~~~~--~~-~h~~~i~~l~~sp~ 255 (304)
..+..+..+ ..+..++|.. +|.++++....+.|...++..+..+.. +. .-..++..+++.||
T Consensus 257 ~~~~~~P~~~~~~~---~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 257 VAGTEQPVFYWKDS---PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp CTTSCCCSEEESSC---CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCccCCeEEeCCC---cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 001111111 1345667753 477777777778888777665443322 22 22358999999999
Q ss_pred CCEEEEe
Q psy4754 256 GTAFSSG 262 (304)
Q Consensus 256 g~~lasg 262 (304)
|.++++.
T Consensus 334 G~lyv~t 340 (353)
T 2g8s_A 334 GYLYVLT 340 (353)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 9977753
No 311
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.20 E-value=0.042 Score=47.08 Aligned_cols=170 Identities=9% Similarity=0.157 Sum_probs=102.7
Q ss_pred CCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCC----CcE--EE--Eeec--CCceEEEEeeec--CCceE
Q psy4754 126 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD----GTA--FS--SGSW--DTTLRCRLFDLR--ADKEV 193 (304)
Q Consensus 126 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~----~~~--la--s~s~--d~~i~i~~~d~~--~~~~~ 193 (304)
...++.....+.+.+||+ +++.+..+.. +.++.|..-|+ ++. ++ +.-. +++ +.+|++. +. .+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~--l~vf~iDp~~~-~l 113 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNT--IEIYAIDGKNG-TL 113 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCE--EEEEEECTTTC-CE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCe--EEEEEECCCCC-ce
Confidence 445666677889999998 6666666543 56777777663 222 33 3333 355 4688663 32 23
Q ss_pred EEeecC-----ceeeeeeEEEE--cCC-CC-EEEEEeCCCcEEEEeC-------CCceeeEEeeccccceEEEEEccCCC
Q psy4754 194 ACYKKD-----SILFGATSVDF--SVS-GR-LLFAGYNDYTINVWDS-------LKCCRVNHLMGHENRVSCLQVSPDGT 257 (304)
Q Consensus 194 ~~~~~~-----~~~~~~~~~~~--s~~-g~-~l~sg~~d~~i~iwd~-------~~~~~~~~~~~h~~~i~~l~~sp~g~ 257 (304)
..+... .....+..+++ +|. +. ++++...++.+..|++ .+.+.++++.-. +.+-.+++.+...
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g 192 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYG 192 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCC
Confidence 333110 11123455666 674 54 6777778899999987 344567777643 5778889999888
Q ss_pred EEEEeecCCeeeeccccccc---hhhe---eeccccCCceeEEEEEecCCc
Q psy4754 258 AFSSGSWDTTLRDEESKNRY---MQYL---LRSRITKPTQGLTVYFQDRGR 302 (304)
Q Consensus 258 ~lasgs~D~~i~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~ 302 (304)
.|..+-+|.-|.-++..+.- ...+ .........+||.++-.++|+
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~ 243 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGK 243 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGC
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCC
Confidence 88899898765444433221 1111 123344457899988776554
No 312
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.10 E-value=0.1 Score=44.20 Aligned_cols=223 Identities=13% Similarity=0.017 Sum_probs=115.1
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCce---eeee-ecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeee-CCC
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCC---RVNH-LMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL-RAD 102 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~---~~~~-~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~-~~~ 102 (304)
.+.++.|.+++..+++ +..|.| +.....++ .+.. .......+.++.+.+ ++.++ ++.++.+. +--|- .+.
T Consensus 37 ~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~-~S~DgG~tW 111 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIML-HTTDGGQSW 111 (327)
T ss_dssp CEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEE-EESSTTSSC
T ss_pred cEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEE-EECCCCCCc
Confidence 4888999877777775 467765 33333332 2211 112344688899876 44444 44455431 21121 111
Q ss_pred eeEeEEeccceeeceeeeEEcCCCCEEEEEeCCCeE-EEecC-CccccceeccCcccceeEEEEcCCCcEEEEeecCCce
Q psy4754 103 KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI-NVWDS-LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 180 (304)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i-~iwd~-~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i 180 (304)
+.+....... .....+.+.+++..++.+ .++.| +-.|- .+.+.+. ..+...+..+.+.|+++.++.+. ++.+
T Consensus 112 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~-~G~~ 185 (327)
T 2xbg_A 112 SQIPLDPKLP--GSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALV--QEAIGVMRNLNRSPSGEYVAVSS-RGSF 185 (327)
T ss_dssp EECCCCTTCS--SCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEE--CSCCCCEEEEEECTTSCEEEEET-TSSE
T ss_pred eECccccCCC--CCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEee--cCCCcceEEEEEcCCCcEEEEEC-CCcE
Confidence 2211100000 012345555666555544 45544 44452 2333332 23455788999999988877654 4443
Q ss_pred EEEEeee--cCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEee----ccccceEEEEEcc
Q psy4754 181 RCRLFDL--RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM----GHENRVSCLQVSP 254 (304)
Q Consensus 181 ~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~----~h~~~i~~l~~sp 254 (304)
.+-.|. .+-+.+. ... ...+..+++.+++..++.+ .+|.+++++...++.-..+. .+...+.++++.|
T Consensus 186 -~~S~d~gG~tW~~~~--~~~--~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 186 -YSTWEPGQTAWEPHN--RTT--SRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp -EEEECTTCSSCEEEE--CCS--SSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred -EEEeCCCCCceeECC--CCC--CCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence 233332 1112221 111 1245678889999877655 56777776422232222221 1224588999999
Q ss_pred CCCEEEEeecCCee
Q psy4754 255 DGTAFSSGSWDTTL 268 (304)
Q Consensus 255 ~g~~lasgs~D~~i 268 (304)
++..++.+. ++.|
T Consensus 260 ~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 260 PNEVWLAGG-AGAL 272 (327)
T ss_dssp SSCEEEEES-TTCE
T ss_pred CCEEEEEeC-CCeE
Confidence 888888765 4544
No 313
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.10 E-value=0.11 Score=44.52 Aligned_cols=226 Identities=15% Similarity=0.100 Sum_probs=119.3
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCcee--eeee----cCCcCcEEEEEECCC----CCeEEEEe--CCCceEEEE
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--VNHL----MGHENRVSCLQVSPD----GTAFSSGS--WDTTLRCRL 96 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~--~~~~----~~h~~~V~~l~~s~d----~~~l~sgs--~D~~i~~~~ 96 (304)
-..++|.|+|.++++--..|.|++++...++. +..+ .........|+++|+ +.+.++=+ .+.. +.-
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~--v~R 111 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR--IVR 111 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE--EEE
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE--EEE
Confidence 57899999999888776689999998765532 2212 123456789999995 44444311 2222 223
Q ss_pred eeeCCC----------eeEe-EEeccceeeceeeeEEcCCCCEEEEEeC-------------CCeEEEecCCccc----c
Q psy4754 97 FDLRAD----------KEVA-CYKKDSILFGATSVDFSVSGRLLFAGYN-------------DYTINVWDSLKCC----R 148 (304)
Q Consensus 97 wd~~~~----------~~~~-~~~~~~~~~~~~~~~~s~~~~~l~sg~~-------------dg~i~iwd~~~~~----~ 148 (304)
+..... +.+. .+.... ......+.|.||+.+.++.+. .|.|.-.+....- +
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~-~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGV-IHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCS-SCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCC-CccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 433321 1111 111111 112356899999987666432 3555555543210 0
Q ss_pred ---cee-ccCcccceeEEEEcCCCcEEEEee-cCCceEEEEeeecCCc------------------eEEEeecCceeeee
Q psy4754 149 ---VNH-LMGHENRVSCLQVSPDGTAFSSGS-WDTTLRCRLFDLRADK------------------EVACYKKDSILFGA 205 (304)
Q Consensus 149 ---~~~-~~~h~~~v~~v~~sp~~~~las~s-~d~~i~i~~~d~~~~~------------------~~~~~~~~~~~~~~ 205 (304)
... -.+|. ....++|+|+++++++-. .|..-.+... ..+. .+..+.... ...
T Consensus 191 f~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i--~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~--~ap 265 (347)
T 3das_A 191 FPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAI--KPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE--ASP 265 (347)
T ss_dssp STTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEE--CTTCBCCTTTCCSSCCCTTCCCCSEEECTTT--CCE
T ss_pred CCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEE--cCCCEecCCcccCCCCCccccCCcEecCCCC--CCC
Confidence 011 12454 346789999988766542 2322111111 1111 111111110 123
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCcee----eEEeeccccceEEEEEccCCCEEEEee
Q psy4754 206 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCR----VNHLMGHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 206 ~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~----~~~~~~h~~~i~~l~~sp~g~~lasgs 263 (304)
..++|. +|.+++..-..+.|....+..... ..-+.+..+++..|+..|||.++++-.
T Consensus 266 ~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 266 SGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 456665 466666666666665555443321 222344457899999999998777643
No 314
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.98 E-value=0.13 Score=43.18 Aligned_cols=185 Identities=12% Similarity=0.059 Sum_probs=87.4
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeC----C-------CcEEEEeCCCcee--eeeecCCc
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN----D-------YTINVWDSLKCCR--VNHLMGHE 68 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~----d-------g~v~iwd~~~~~~--~~~~~~h~ 68 (304)
|.+.+..||+.+++=.. .................++.+++.|+. + ..+..||+.+.+- +..+....
T Consensus 11 GG~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 89 (315)
T 4asc_A 11 SEEGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89 (315)
T ss_dssp ETTEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred cCCceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence 45678899999986321 111111111222233457788888874 1 1277888876532 22221111
Q ss_pred CcEEEEEECCCCCeEEEEeCC----C--ceEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC------CC
Q psy4754 69 NRVSCLQVSPDGTAFSSGSWD----T--TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN------DY 136 (304)
Q Consensus 69 ~~V~~l~~s~d~~~l~sgs~D----~--~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~------dg 136 (304)
..-..+.+ +++.++.|+.+ . .-.+..+|..+.+-............ .++. ..+++.++.|+. -.
T Consensus 90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~ 165 (315)
T 4asc_A 90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVL-SHMDLVYVIGGKGSDRKCLN 165 (315)
T ss_dssp ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCTTSCBCC
T ss_pred hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEE-EECCEEEEEeCCCCCCcccc
Confidence 11112222 56677777743 1 11245677765432111111111111 1222 244556666654 24
Q ss_pred eEEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEeecCCc---eEEEEeeecCCceE
Q psy4754 137 TINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKEV 193 (304)
Q Consensus 137 ~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---i~i~~~d~~~~~~~ 193 (304)
.+.+||..+.+ .+..+......-.++.+ ++++++.|+.++. -.+..||+.+.+-.
T Consensus 166 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 166 KMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred eEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 68888876532 22222211111122223 6778888886553 12467787776543
No 315
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.82 E-value=0.13 Score=42.97 Aligned_cols=224 Identities=12% Similarity=0.113 Sum_probs=104.0
Q ss_pred EEcCCCCEEEEeeCC----CcEEEEeCCCcee--eeeecCCcCcEEEEEECCCCCeEEEEeC----CCc---eEEEEeee
Q psy4754 33 DFSVSGRLLFAGYND----YTINVWDSLKCCR--VNHLMGHENRVSCLQVSPDGTAFSSGSW----DTT---LRCRLFDL 99 (304)
Q Consensus 33 ~~~~~g~~l~tg~~d----g~v~iwd~~~~~~--~~~~~~h~~~V~~l~~s~d~~~l~sgs~----D~~---i~~~~wd~ 99 (304)
+...++.+++.|+.+ ..+.+||+.+.+- +..+......-..+.+ +++.++.|+. ++. -.++.+|.
T Consensus 20 ~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 20 APKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp -CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred ccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECC
Confidence 334467788888742 4688999876542 2112111111122222 5667777765 221 11456777
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCC-----CeEEEecCCccc--cceeccCcccceeEEEEcCCCcEEE
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFS 172 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~la 172 (304)
.+.+-...............+. .++..++.|+.+ ..+.+||..+.+ .+..+......-..+.+ ++++++
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv 173 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYA 173 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEE
T ss_pred CCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEE
Confidence 6543221111111111112222 245566665432 467888876542 22222211111222233 677888
Q ss_pred EeecCCc---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCce--eeEEeec
Q psy4754 173 SGSWDTT---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMG 242 (304)
Q Consensus 173 s~s~d~~---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-----~~i~iwd~~~~~--~~~~~~~ 242 (304)
.|+.++. -.+..||+.+.+-...-...........+.+ ++++++.|+.+ ..+.+||+.+.+ .+..+..
T Consensus 174 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 251 (308)
T 1zgk_A 174 VGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH 251 (308)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred EeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC
Confidence 8876532 1245778776543322111111111122222 67777777654 468889976643 2222211
Q ss_pred cccceEEEEEccCCCEEEEeecCC
Q psy4754 243 HENRVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 243 h~~~i~~l~~sp~g~~lasgs~D~ 266 (304)
......++. -+++.++.|+.++
T Consensus 252 ~r~~~~~~~--~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 252 RRSALGITV--HQGRIYVLGGYDG 273 (308)
T ss_dssp CCBSCEEEE--ETTEEEEECCBCS
T ss_pred CccceEEEE--ECCEEEEEcCcCC
Confidence 111122222 2678888888654
No 316
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.80 E-value=0.18 Score=42.26 Aligned_cols=184 Identities=12% Similarity=0.061 Sum_probs=86.1
Q ss_pred CCceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeC----CC-------cEEEEeCCCcee--eeeecCCc
Q psy4754 2 GKNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN----DY-------TINVWDSLKCCR--VNHLMGHE 68 (304)
Q Consensus 2 ~~~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~----dg-------~v~iwd~~~~~~--~~~~~~h~ 68 (304)
|...+..||+.+++-.. .................++.+++.|+. ++ .+..||+.+.+- +..+....
T Consensus 22 GG~~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 22 NDTAAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp CSSEEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred cccceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 55668899999886322 111110111122233457788888883 22 177888876532 22221111
Q ss_pred CcEEEEEECCCCCeEEEEeCCC---c--eEEEEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC------CCe
Q psy4754 69 NRVSCLQVSPDGTAFSSGSWDT---T--LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN------DYT 137 (304)
Q Consensus 69 ~~V~~l~~s~d~~~l~sgs~D~---~--i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~------dg~ 137 (304)
.....+.+ +++.++.|+.+. . -.+..+|..+.+-............. ++.. .++..++.|+. -..
T Consensus 101 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccce
Confidence 11122222 567777777541 1 12456676654322211111111111 2222 45556566543 245
Q ss_pred EEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEeecCCc---eEEEEeeecCCce
Q psy4754 138 INVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT---LRCRLFDLRADKE 192 (304)
Q Consensus 138 i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~---i~i~~~d~~~~~~ 192 (304)
+.+||..+.+ .+..+......-..+.+ ++++++.|+.+.. -.+.+||+.+.+-
T Consensus 177 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred EEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 8889876542 22222111111122222 6678888875432 1245778776554
No 317
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.60 E-value=0.2 Score=43.09 Aligned_cols=140 Identities=13% Similarity=0.071 Sum_probs=78.3
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCccc-cceec---cCcccceeEEEEcCC----CcEEEEeec---C----CceE
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCC-RVNHL---MGHENRVSCLQVSPD----GTAFSSGSW---D----TTLR 181 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~---~~h~~~v~~v~~sp~----~~~las~s~---d----~~i~ 181 (304)
...++|.|+++ ++.+..++.|+++|. .+. .+..+ .........|+++|+ +.++++-+. + ..
T Consensus 31 P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~-- 106 (354)
T 3a9g_A 31 PWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR-- 106 (354)
T ss_dssp EEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE--
T ss_pred CeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE--
Confidence 45788999987 455566799999973 332 22211 122346889999997 555555442 2 23
Q ss_pred EEEeeecCC-------ceEE-EeecCceeeeeeEEEEcCCCCEEEEEeC-------------CCcEEEEeCCCc------
Q psy4754 182 CRLFDLRAD-------KEVA-CYKKDSILFGATSVDFSVSGRLLFAGYN-------------DYTINVWDSLKC------ 234 (304)
Q Consensus 182 i~~~d~~~~-------~~~~-~~~~~~~~~~~~~~~~s~~g~~l~sg~~-------------d~~i~iwd~~~~------ 234 (304)
|..++.... +.+. .+... .......++|.|||.++++-+. .+.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~-~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGA-YIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECC-SSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCC-CCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 345665443 1111 12211 1122467899999998887432 135555554321
Q ss_pred ---eeeEEeeccccceEEEEEcc-CCCEEEEee
Q psy4754 235 ---CRVNHLMGHENRVSCLQVSP-DGTAFSSGS 263 (304)
Q Consensus 235 ---~~~~~~~~h~~~i~~l~~sp-~g~~lasgs 263 (304)
.++. -.+|. ....++|+| +|..+++-.
T Consensus 186 f~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 186 FPNSPIW-SYGHR-NPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp STTCCEE-EECCS-CCCEEEECTTTCCEEEEEC
T ss_pred CCCCcEE-EEccC-CcceEEEeCCCCCEEEEec
Confidence 1121 23443 456899999 777777643
No 318
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.56 E-value=0.31 Score=41.76 Aligned_cols=197 Identities=11% Similarity=0.039 Sum_probs=99.3
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEecc---ceeeceeeeEEcCC---CCEEEEEeCC------Ce
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD---SILFGATSVDFSVS---GRLLFAGYND------YT 137 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~---~~~~~~~~~~~s~~---~~~l~sg~~d------g~ 137 (304)
.-+.++|.|+|+++++- .++.| +.++ .++........ ........++++|+ +..++.+... ..
T Consensus 32 ~P~~ia~~pdG~l~V~e-~~g~I--~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAE-RPGRI--RLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEEE-TTTEE--EEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEEe-CCCeE--EEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 45689999999966664 45654 4565 33321111110 01123568899998 5666655432 56
Q ss_pred EEEecCCcc-----ccc-eecc---CcccceeEEEEcCCCcEEEEeecCCc-----------eEEEEeeecCC-------
Q psy4754 138 INVWDSLKC-----CRV-NHLM---GHENRVSCLQVSPDGTAFSSGSWDTT-----------LRCRLFDLRAD------- 190 (304)
Q Consensus 138 i~iwd~~~~-----~~~-~~~~---~h~~~v~~v~~sp~~~~las~s~d~~-----------i~i~~~d~~~~------- 190 (304)
|..++.... +.+ ..+. +.......++|.|||.++++.+..+. -+|..++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 777775532 111 1122 11123468999999987776542211 12334444320
Q ss_pred -----ceEEEeecCceeeeeeEEEEcC-CCCEEEEEeCCCc--------EEEEeCCC----------------ceeeEEe
Q psy4754 191 -----KEVACYKKDSILFGATSVDFSV-SGRLLFAGYNDYT--------INVWDSLK----------------CCRVNHL 240 (304)
Q Consensus 191 -----~~~~~~~~~~~~~~~~~~~~s~-~g~~l~sg~~d~~--------i~iwd~~~----------------~~~~~~~ 240 (304)
.....+... .-+...++|+| +|.++++-..... |.+...-. ..++..+
T Consensus 187 ~~~~~~~~~i~a~G--~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 187 LGRRGARPEVYSLG--HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTCTTSCTTEEEEC--CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred cCCCCCCccEEEEc--CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 000111111 01356789999 6777766433222 33322110 0122233
Q ss_pred eccccceEEEEEccCCCEEEEeecCCeeeeccccc
Q psy4754 241 MGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKN 275 (304)
Q Consensus 241 ~~h~~~i~~l~~sp~g~~lasgs~D~~i~~~~~~~ 275 (304)
.+......++| .+|..+++.-....|...+++.
T Consensus 265 -~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~ 297 (352)
T 2ism_A 265 -PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEG 297 (352)
T ss_dssp -TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEE
T ss_pred -CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECC
Confidence 22234567888 5677777766666676555443
No 319
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.55 E-value=0.32 Score=41.70 Aligned_cols=141 Identities=16% Similarity=0.119 Sum_probs=79.0
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCcccc--ceec----cCcccceeEEEEcCC----CcEEEEee--cCCceEEEE
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--VNHL----MGHENRVSCLQVSPD----GTAFSSGS--WDTTLRCRL 184 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~----~~h~~~v~~v~~sp~----~~~las~s--~d~~i~i~~ 184 (304)
...++|.|++..+++--..|.|++++...+.. +..+ .........|+++|+ +.++++-+ .+..| .-
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v--~R 111 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI--VR 111 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE--EE
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE--EE
Confidence 45789999998766654489999997543321 2111 223456789999995 54444322 23332 34
Q ss_pred eeecC----------CceEE-EeecCceeeeeeEEEEcCCCCEEEEEeC-------------CCcEEEEeCCCc------
Q psy4754 185 FDLRA----------DKEVA-CYKKDSILFGATSVDFSVSGRLLFAGYN-------------DYTINVWDSLKC------ 234 (304)
Q Consensus 185 ~d~~~----------~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~sg~~-------------d~~i~iwd~~~~------ 234 (304)
+.+.. .+.+. .+.. ........++|.|||.++++-++ .+.|.=.+....
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 44433 11111 1221 11123457999999998888432 244433443321
Q ss_pred ---eeeEEeeccccceEEEEEccCCCEEEEe
Q psy4754 235 ---CRVNHLMGHENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 235 ---~~~~~~~~h~~~i~~l~~sp~g~~lasg 262 (304)
.++. -.||. ....++|+|+|..+++-
T Consensus 191 f~~~~i~-a~G~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 191 FPGSPVY-SYGHR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp STTCCEE-EBCCS-BCCEEEECTTCCEEEEE
T ss_pred CCCCeEE-eeCCC-CcceEEECCCCCEEEEe
Confidence 1121 23554 45789999998887764
No 320
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.31 E-value=0.28 Score=43.08 Aligned_cols=142 Identities=16% Similarity=0.092 Sum_probs=88.4
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCceeeeeecCC----cCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe-------
Q psy4754 35 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH----ENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK------- 103 (304)
Q Consensus 35 ~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h----~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~------- 103 (304)
+.+|.-++.+ .+..||..++.+....+.+..- -+.|..+..+|+|++|+..+.. ++ .+..+..+.
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V--~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EI--FVMEVPWGYSNVEDVS 104 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EE--EEEECCTTCSCCCCHH
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eE--EEEEecCccccCcccc
Confidence 3455555444 4578888888754444444322 2357789999999999887643 54 455554211
Q ss_pred -----eEeEEeccce----eeceeeeEEcCC---CCEEEEEeCCCeEEEecCCccccc-eec---------cCcccceeE
Q psy4754 104 -----EVACYKKDSI----LFGATSVDFSVS---GRLLFAGYNDYTINVWDSLKCCRV-NHL---------MGHENRVSC 161 (304)
Q Consensus 104 -----~~~~~~~~~~----~~~~~~~~~s~~---~~~l~sg~~dg~i~iwd~~~~~~~-~~~---------~~h~~~v~~ 161 (304)
+...++.... ...+..+.|+|- +..+++-..|+.|++||+...... ..+ ......|.+
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence 1223332211 124678889985 558999999999999998752211 011 122357889
Q ss_pred EEEcCCCcEEEEee--cCCce
Q psy4754 162 LQVSPDGTAFSSGS--WDTTL 180 (304)
Q Consensus 162 v~~sp~~~~las~s--~d~~i 180 (304)
++|.+++..+...+ ..|.|
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDI 205 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDI 205 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEE
T ss_pred EEEcCCCcEEEEEecCCCCCE
Confidence 99999988776644 66765
No 321
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.18 E-value=0.46 Score=39.70 Aligned_cols=216 Identities=11% Similarity=0.046 Sum_probs=99.4
Q ss_pred EEEEeeCCCcEEEEeCCCceee-eeecCCcCcEEEEEECCCCCeEEEEeC-------CCceE--EEEeeeCCCeeEeEEe
Q psy4754 40 LLFAGYNDYTINVWDSLKCCRV-NHLMGHENRVSCLQVSPDGTAFSSGSW-------DTTLR--CRLFDLRADKEVACYK 109 (304)
Q Consensus 40 ~l~tg~~dg~v~iwd~~~~~~~-~~~~~h~~~V~~l~~s~d~~~l~sgs~-------D~~i~--~~~wd~~~~~~~~~~~ 109 (304)
+++.|+ ..+..||+.+++=. ..+.........-....+++.++.|+. ..... +..+|..+.+-.....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 445565 46899998876422 222211122223334457788888874 11111 4567766543211111
Q ss_pred ccceeeceeeeEEcCCCCEEEEEeCC--------CeEEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEeec-CC
Q psy4754 110 KDSILFGATSVDFSVSGRLLFAGYND--------YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSW-DT 178 (304)
Q Consensus 110 ~~~~~~~~~~~~~s~~~~~l~sg~~d--------g~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~-d~ 178 (304)
........ ++.. .++..++.|+.+ ..+.+||..+.+ .+..+......-..+. -+++.++.|+. +.
T Consensus 85 ~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 85 LPSPRCLF-GLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSD 160 (315)
T ss_dssp BSSCEESC-EEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTT
T ss_pred CCcchhce-eEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCC
Confidence 11111111 2222 245555555522 458888876532 2222221111112222 36678888876 22
Q ss_pred c---eEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCce--eeEEeeccccceE
Q psy4754 179 T---LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY-----TINVWDSLKCC--RVNHLMGHENRVS 248 (304)
Q Consensus 179 ~---i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~-----~i~iwd~~~~~--~~~~~~~h~~~i~ 248 (304)
. -.+..||..+.+-...-...........+. -++++++.|+.++ .+.+||..+.+ .+..+........
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 238 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS 238 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence 1 124677877654332211111111112222 2667777776543 47788876642 2222211111222
Q ss_pred EEEEccCCCEEEEeecC
Q psy4754 249 CLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 249 ~l~~sp~g~~lasgs~D 265 (304)
++. -+++.++.|+.+
T Consensus 239 ~~~--~~~~l~v~GG~~ 253 (315)
T 4asc_A 239 LVS--LVGTLYAIGGFA 253 (315)
T ss_dssp EEE--ETTEEEEEEEEE
T ss_pred EEE--ECCEEEEECCcc
Confidence 222 367888888764
No 322
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.03 E-value=0.27 Score=39.20 Aligned_cols=155 Identities=16% Similarity=0.108 Sum_probs=83.0
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccc--------eeEEEEcCCCcEEEEeecCCceEEEEeeec
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR--------VSCLQVSPDGTAFSSGSWDTTLRCRLFDLR 188 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~--------v~~v~~sp~~~~las~s~d~~i~i~~~d~~ 188 (304)
...++|+|++. |++. .+|.+.-.+..+.+. ....+-... -.++.|.|+|.+.++ .|+.+ .-++..
T Consensus 43 ~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~-~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~i--yr~~pP 115 (236)
T 1tl2_A 43 FKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDN-DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKL--YKASPP 115 (236)
T ss_dssp CSEEEECTTSC-EEEE-ETTEEEEESCCCSTT-CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEE--EEESCC
T ss_pred ceeEEECCCcc-EEEE-eCCeEEEECCCCCCc-ccccccccEecccccccceEEEECCCCCEEEe--CCCEE--EEeCCC
Confidence 45789999887 4444 678777777544221 111111112 378899999998887 46765 334432
Q ss_pred CCceEE------EeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCce------eeEEee-ccccceEEEEEccC
Q psy4754 189 ADKEVA------CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCC------RVNHLM-GHENRVSCLQVSPD 255 (304)
Q Consensus 189 ~~~~~~------~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~------~~~~~~-~h~~~i~~l~~sp~ 255 (304)
+...-. ++.... -..+..+.|.|+|.+.+.. |+.+.-....+.. ....+. +.-..-..+.|.|+
T Consensus 116 ~~~~~~Wl~~a~~vg~~g-w~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGG-WSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV 192 (236)
T ss_dssp CSTTCCHHHHSEEEECSS-GGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred cCCCCceeccccEeccCC-CCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence 211100 000000 0135789999999999888 6675433322111 011111 22234455779999
Q ss_pred CCEEEEeecCCee-eeccccccchhheee
Q psy4754 256 GTAFSSGSWDTTL-RDEESKNRYMQYLLR 283 (304)
Q Consensus 256 g~~lasgs~D~~i-~~~~~~~~~~~~~~~ 283 (304)
|..++.. ++.+ +.-....+..-|+.+
T Consensus 193 G~l~~v~--~g~~Y~~~~p~~~~~~~~~~ 219 (236)
T 1tl2_A 193 GTLFGVQ--GGKFYEDYPPSYAYDNWLAR 219 (236)
T ss_dssp SCEEEEE--TTEEEEESCCCSTTCCHHHH
T ss_pred CcEEEEe--CCeEEecCCccccCcchhhh
Confidence 9888776 6643 333333344444433
No 323
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.03 E-value=0.34 Score=41.28 Aligned_cols=40 Identities=5% Similarity=-0.069 Sum_probs=21.4
Q ss_pred cEEEEeCCC--ceeeEEeeccccceEEEEEccCCCEEEEeecCC
Q psy4754 225 TINVWDSLK--CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 225 ~i~iwd~~~--~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~ 266 (304)
.+.+||..+ ...+..+......-.+ ...+++.++.|+.+.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGGETA 327 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEEECG
T ss_pred eEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEeeeCC
Confidence 467888764 3344433322222222 334778888888664
No 324
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.89 E-value=0.69 Score=39.24 Aligned_cols=252 Identities=8% Similarity=0.063 Sum_probs=145.3
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCe-E
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA-F 83 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~-l 83 (304)
.|-|-|+..++.... +....-+.-.+|..+.+|--. ..++.++|+++.++++.+.-. ..|.-=.|-.+..+ |
T Consensus 50 ~VvIiDl~n~~~~~R-----rpi~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~L~l 122 (365)
T 2xzh_A 50 QVVIIDMNDPSNPIR-----RPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVAL 122 (365)
T ss_dssp EEEEEETTSTTSCEE-----EECCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSEEEE
T ss_pred EEEEEECCCCCCccc-----cccccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCCeEEE
Confidence 566777777543211 112234566689988887665 678999999998888776543 56666677655443 3
Q ss_pred EEEeCCCceEEEEeeeCC-CeeEeEEeccceeec--eeeeEEcCCCCEEEEEe-------CCCeEEEecCCccccceecc
Q psy4754 84 SSGSWDTTLRCRLFDLRA-DKEVACYKKDSILFG--ATSVDFSVSGRLLFAGY-------NDYTINVWDSLKCCRVNHLM 153 (304)
Q Consensus 84 ~sgs~D~~i~~~~wd~~~-~~~~~~~~~~~~~~~--~~~~~~s~~~~~l~sg~-------~dg~i~iwd~~~~~~~~~~~ 153 (304)
+| +.. +.-|++.. ..+...+..+..+.. +.....+++.++++..+ -.|.+.+|..+.. .-+.+.
T Consensus 123 VT---~ta--VyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie 196 (365)
T 2xzh_A 123 VT---DNA--VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE 196 (365)
T ss_dssp EE---SSE--EEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC
T ss_pred Ec---CCc--EEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceee
Confidence 33 234 46798864 345555655443322 34455677788765532 2377788875532 233456
Q ss_pred CcccceeEEEEcCC---CcEEEEeecCCc-eEEEEeeecCC---ce------EEE-eecCceeeeeeEEEEcCCCCEEEE
Q psy4754 154 GHENRVSCLQVSPD---GTAFSSGSWDTT-LRCRLFDLRAD---KE------VAC-YKKDSILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 154 ~h~~~v~~v~~sp~---~~~las~s~d~~-i~i~~~d~~~~---~~------~~~-~~~~~~~~~~~~~~~s~~g~~l~s 219 (304)
||-..-..+.+..+ .+.|+.+..... .++.+.++... .. +.. ++.+...--..++..++.-..+..
T Consensus 197 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyv 276 (365)
T 2xzh_A 197 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 276 (365)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEE
Confidence 77543322222111 123444443211 24556776432 10 111 111110011346667777777777
Q ss_pred EeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeee
Q psy4754 220 GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269 (304)
Q Consensus 220 g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~ 269 (304)
-..-|-|++||++++.++..-+=-.++|..-+..+...-++.....|.|-
T Consensus 277 iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl 326 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 326 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEE
T ss_pred EeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEE
Confidence 78889999999999998866555567777666666655666666666654
No 325
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.87 E-value=0.46 Score=40.70 Aligned_cols=145 Identities=11% Similarity=0.067 Sum_probs=76.9
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCccc--cceec----cCcccceeEEEEcCC----CcEEEEeecC---C--ceE
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHL----MGHENRVSCLQVSPD----GTAFSSGSWD---T--TLR 181 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~----~~h~~~v~~v~~sp~----~~~las~s~d---~--~i~ 181 (304)
...++|.|+++.++.+...|.|++++..... .+..+ .........|+++|+ +..+++-+.. + .-.
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~ 99 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTA 99 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEE
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeE
Confidence 4678999999834455667999999743211 11111 112345689999995 5555543321 1 122
Q ss_pred EEEeeecCC----ceEEE-eecC----ceeeeeeEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCce----
Q psy4754 182 CRLFDLRAD----KEVAC-YKKD----SILFGATSVDFSVSGRLLFAGYND-------------YTINVWDSLKCC---- 235 (304)
Q Consensus 182 i~~~d~~~~----~~~~~-~~~~----~~~~~~~~~~~s~~g~~l~sg~~d-------------~~i~iwd~~~~~---- 235 (304)
|..+++... ..... +... ........++|.|||.++++-+.. ++|.-++.....
T Consensus 100 v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~n 179 (353)
T 2g8s_A 100 VGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDN 179 (353)
T ss_dssp EEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTC
T ss_pred EEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCC
Confidence 344555322 11111 1110 011123579999999877775432 356555544210
Q ss_pred --------eeEEe-eccccceEEEEEcc-CCCEEEEe
Q psy4754 236 --------RVNHL-MGHENRVSCLQVSP-DGTAFSSG 262 (304)
Q Consensus 236 --------~~~~~-~~h~~~i~~l~~sp-~g~~lasg 262 (304)
....+ .+|. ....++|.| +|..+++-
T Consensus 180 pf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d 215 (353)
T 2g8s_A 180 PFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNE 215 (353)
T ss_dssp TTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEE
T ss_pred CCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEe
Confidence 11111 2443 568899999 67766653
No 326
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.87 E-value=1.2 Score=41.92 Aligned_cols=198 Identities=13% Similarity=0.109 Sum_probs=98.7
Q ss_pred CCCCEEEEeeCC----CcEEEEeCCCce--eee-e-----ecCCcCcEEEEEECCCCCeEEEEeCCCc----eEEEEeee
Q psy4754 36 VSGRLLFAGYND----YTINVWDSLKCC--RVN-H-----LMGHENRVSCLQVSPDGTAFSSGSWDTT----LRCRLFDL 99 (304)
Q Consensus 36 ~~g~~l~tg~~d----g~v~iwd~~~~~--~~~-~-----~~~h~~~V~~l~~s~d~~~l~sgs~D~~----i~~~~wd~ 99 (304)
.++.+++.||.+ ..+.+||+.+++ .+. . +......-..+.+..+++.++.||.+.. -.++.+|.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 567788888854 468889887653 222 1 1111112223333326778888876442 12467777
Q ss_pred CCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeCCC--eEEEecCCccc--ccee---ccCcccceeEEEEcCC-CcEE
Q psy4754 100 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY--TINVWDSLKCC--RVNH---LMGHENRVSCLQVSPD-GTAF 171 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg--~i~iwd~~~~~--~~~~---~~~h~~~v~~v~~sp~-~~~l 171 (304)
.+.+-...-........ .++..-.++..++.|+.++ .+.+||..+.+ .+.. .......-.++.+..+ ++.+
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 65432211111111111 2233323677777776543 68899876542 2221 1111122233555555 7788
Q ss_pred EEeecC--C---ceEEEEeeecCCc------eEEEeec-CceeeeeeEEEEcCCCCEEEEEeC--------CCcEEEEeC
Q psy4754 172 SSGSWD--T---TLRCRLFDLRADK------EVACYKK-DSILFGATSVDFSVSGRLLFAGYN--------DYTINVWDS 231 (304)
Q Consensus 172 as~s~d--~---~i~i~~~d~~~~~------~~~~~~~-~~~~~~~~~~~~s~~g~~l~sg~~--------d~~i~iwd~ 231 (304)
+.|+.+ + .-.+..||+.+.+ ....... ...... .+++...++++++.|+. ...+.+||.
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 633 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYG-SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP 633 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBS-CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCccc-ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence 888762 2 1235688888766 2111110 000011 12333344777777763 346889998
Q ss_pred CCce
Q psy4754 232 LKCC 235 (304)
Q Consensus 232 ~~~~ 235 (304)
.+.+
T Consensus 634 ~t~~ 637 (695)
T 2zwa_A 634 LSET 637 (695)
T ss_dssp TTTE
T ss_pred CCCe
Confidence 7653
No 327
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.81 E-value=0.22 Score=39.71 Aligned_cols=139 Identities=14% Similarity=0.028 Sum_probs=75.9
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee------eeec--CCcCcEEEEEECCCCCeEEEEeCCCceEEEEeee
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV------NHLM--GHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 99 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~------~~~~--~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~ 99 (304)
.++.++|+|+|.+.+. .+|.+.-.+..+++.. ..+- +... ..++.|.|+|.+.++ .|+.| .-++-
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~i--yr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKL--YKASP 114 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEE--EEESC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEE--EEeCC
Confidence 4789999999987766 7787777776542111 1110 1111 478899999988777 46765 23443
Q ss_pred CC-CeeEeEEecccee------eceeeeEEcCCCCEEEEEeCCCeEEEecCCcccc-----ceecc--CcccceeEEEEc
Q psy4754 100 RA-DKEVACYKKDSIL------FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR-----VNHLM--GHENRVSCLQVS 165 (304)
Q Consensus 100 ~~-~~~~~~~~~~~~~------~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~-----~~~~~--~h~~~v~~v~~s 165 (304)
.+ +..-.... ... ..+..+.+.|+|.+.+.. |+.+.-+...+... ..+.. +.-..-.-+.|.
T Consensus 115 P~~~~~~Wl~~--a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 115 PQSDTDNWIAR--ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CCSTTCCHHHH--SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred CcCCCCceecc--ccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 22 11111000 000 124678899999765555 77765443221110 01111 111223446689
Q ss_pred CCCcEEEEeecCCc
Q psy4754 166 PDGTAFSSGSWDTT 179 (304)
Q Consensus 166 p~~~~las~s~d~~ 179 (304)
|++.+++.. ++.
T Consensus 191 ~~G~l~~v~--~g~ 202 (236)
T 1tl2_A 191 SVGTLFGVQ--GGK 202 (236)
T ss_dssp TTSCEEEEE--TTE
T ss_pred CCCcEEEEe--CCe
Confidence 999877765 664
No 328
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.72 E-value=0.98 Score=39.71 Aligned_cols=144 Identities=19% Similarity=0.211 Sum_probs=83.9
Q ss_pred CCCeEEEEeCCCceEEEEeeeCCCeeEeEEeccc-eee-ceeeeEEcCCCCEEEEEeCCCeEEEecCCccc---------
Q psy4754 79 DGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDS-ILF-GATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--------- 147 (304)
Q Consensus 79 d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~-~~~-~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~--------- 147 (304)
++..++.+- ++.+ |.-++..+...+.++... ..+ .+..+..+|+|.++|..+ +..|.|-.+..+.
T Consensus 31 n~t~i~~a~-~n~i--R~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 31 NGTRIVFIQ-DNII--RWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTEEEEEE-TTEE--EEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred CCCEEEEEE-CCEE--EEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 344444332 3443 334444333444444331 112 356788999999988865 5688888765221
Q ss_pred -cc--eecc-C-----cccceeEEEEcCCC---cEEEEeecCCceEEEEeeecCC--ceEEEeecCc-------eeeeee
Q psy4754 148 -RV--NHLM-G-----HENRVSCLQVSPDG---TAFSSGSWDTTLRCRLFDLRAD--KEVACYKKDS-------ILFGAT 206 (304)
Q Consensus 148 -~~--~~~~-~-----h~~~v~~v~~sp~~---~~las~s~d~~i~i~~~d~~~~--~~~~~~~~~~-------~~~~~~ 206 (304)
.+ +.+. + ...+|..+.|+|-+ ..+++-..|+.| ++||+... ++. .++... ....+.
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~I--r~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTI--TMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCE--EEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEE--EEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence 01 1111 1 24679999999954 468888889885 78998652 222 232111 113478
Q ss_pred EEEEcCCCCEEEEEe--CCCcEEEE
Q psy4754 207 SVDFSVSGRLLFAGY--NDYTINVW 229 (304)
Q Consensus 207 ~~~~s~~g~~l~sg~--~d~~i~iw 229 (304)
+++|++++-.|-..+ .+|.|+-.
T Consensus 184 S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 184 DLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEcCCCcEEEEEecCCCCCEEEE
Confidence 999999887665544 77888643
No 329
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.71 E-value=1 Score=40.01 Aligned_cols=104 Identities=9% Similarity=0.088 Sum_probs=57.0
Q ss_pred eeeeEEcCCCCEEEEEeCCCeEEEecCCccc--cceeccC------cccceeEEEEcCC----CcEEEEeec------CC
Q psy4754 117 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCC--RVNHLMG------HENRVSCLQVSPD----GTAFSSGSW------DT 178 (304)
Q Consensus 117 ~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~------h~~~v~~v~~sp~----~~~las~s~------d~ 178 (304)
...++|.|+++++++-...+.|++++..++. .+..+.. ....+..|+|+|+ +.++++-+. +.
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~ 108 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK 108 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcc
Confidence 4578899999866664434578888754332 1222211 2355779999994 555554432 11
Q ss_pred ----ceEEEEeeecCC-------ceEEE-eecCceeeeeeEEEEcCCCCEEEEEe
Q psy4754 179 ----TLRCRLFDLRAD-------KEVAC-YKKDSILFGATSVDFSVSGRLLFAGY 221 (304)
Q Consensus 179 ----~i~i~~~d~~~~-------~~~~~-~~~~~~~~~~~~~~~s~~g~~l~sg~ 221 (304)
.-.|..++.... +.+.. +... .......++|.|||.++++-+
T Consensus 109 ~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 109 ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccEEEEEEECCCCCCcCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEEEC
Confidence 112334544321 11211 2211 112357899999999888754
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.53 E-value=0.89 Score=37.94 Aligned_cols=218 Identities=12% Similarity=0.092 Sum_probs=98.2
Q ss_pred CEEEEeeCCCcEEEEeCCCceeee-eecCCcCcEEEEEECCCCCeEEEEeCC----C---ce--EEEEeeeCCCeeEeEE
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRVN-HLMGHENRVSCLQVSPDGTAFSSGSWD----T---TL--RCRLFDLRADKEVACY 108 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~d~~~l~sgs~D----~---~i--~~~~wd~~~~~~~~~~ 108 (304)
.+++.|+.+ +..||+.+.+-.. .+.........-....+++.++.|+.. + .+ .+..+|..+.+-....
T Consensus 17 ~i~~~GG~~--~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 17 LILLVNDTA--AVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEEECSSE--EEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhhccccc--eEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 345566543 8899988765322 121111112223344567788888731 1 11 1456776554322111
Q ss_pred eccceeeceeeeEEcCCCCEEEEEeCC-------CeEEEecCCccc--cceeccCcccceeEEEEcCCCcEEEEeecCC-
Q psy4754 109 KKDSILFGATSVDFSVSGRLLFAGYND-------YTINVWDSLKCC--RVNHLMGHENRVSCLQVSPDGTAFSSGSWDT- 178 (304)
Q Consensus 109 ~~~~~~~~~~~~~~s~~~~~l~sg~~d-------g~i~iwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~d~- 178 (304)
........ .++.. .++..++.|+.+ ..+.+||..+.+ .+..+......-..+. .++++++.|+.+.
T Consensus 95 ~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 170 (318)
T 2woz_A 95 PLPSARCL-FGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDD 170 (318)
T ss_dssp CBSSCBCS-CEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESS
T ss_pred CCCccccc-cceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCC
Confidence 11111111 12222 245666666543 357788876532 2222211111111222 3677888887521
Q ss_pred ---ceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCce--eeEEeeccccceE
Q psy4754 179 ---TLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND-----YTINVWDSLKCC--RVNHLMGHENRVS 248 (304)
Q Consensus 179 ---~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d-----~~i~iwd~~~~~--~~~~~~~h~~~i~ 248 (304)
.-.+..||..+.+-...-...........+. -++++++.|+.+ ..+.+||..+.+ .+..+........
T Consensus 171 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 248 (318)
T 2woz_A 171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSIS 248 (318)
T ss_dssp SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCE
T ss_pred CCccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceE
Confidence 1124678887765433211111111112222 366777777543 346778876532 2222221111112
Q ss_pred EEEEccCCCEEEEeecCC
Q psy4754 249 CLQVSPDGTAFSSGSWDT 266 (304)
Q Consensus 249 ~l~~sp~g~~lasgs~D~ 266 (304)
++ ..+++.++.|+.+.
T Consensus 249 ~~--~~~~~i~v~GG~~~ 264 (318)
T 2woz_A 249 LV--SLAGSLYAIGGFAM 264 (318)
T ss_dssp EE--EETTEEEEECCBCC
T ss_pred EE--EECCEEEEECCeec
Confidence 22 23678888887653
No 331
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.50 E-value=0.98 Score=42.59 Aligned_cols=188 Identities=11% Similarity=-0.001 Sum_probs=92.1
Q ss_pred ceeEEeeccccceEeee-e-----ccccccceeEEEEcCCCCEEEEeeCCC------cEEEEeCCCce--eeeeecCCcC
Q psy4754 4 NHCRLFDLRADKEVACY-K-----KDSILFGATSVDFSVSGRLLFAGYNDY------TINVWDSLKCC--RVNHLMGHEN 69 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~-~-----~~~~~~~i~~~~~~~~g~~l~tg~~dg------~v~iwd~~~~~--~~~~~~~h~~ 69 (304)
+.+-+||+.+++-.... + .......-.++.+..++.+++.||.++ .+.+||+.+.+ .+..+.....
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~ 491 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF 491 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence 35778898887432211 1 111111123333332778888887643 57889987643 2222211111
Q ss_pred cEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeEEe---ccceeeceeeeEEcCC-CCEEEEEeC--C-----CeE
Q psy4754 70 RVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK---KDSILFGATSVDFSVS-GRLLFAGYN--D-----YTI 138 (304)
Q Consensus 70 ~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~~~---~~~~~~~~~~~~~s~~-~~~l~sg~~--d-----g~i 138 (304)
.- +.+...+++.++.||.+..-.+..||..+.+-..... ..........+.+..+ +..++.|+. + ..+
T Consensus 492 ~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v 570 (695)
T 2zwa_A 492 RH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKA 570 (695)
T ss_dssp SC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEE
T ss_pred cc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcE
Confidence 11 2233247888888887553235788887654221111 0011112233455554 555666654 2 468
Q ss_pred EEecCCccc--------cceecc-CcccceeEEEEcCCCcEEEEeecCCc------eEEEEeeecCCceE
Q psy4754 139 NVWDSLKCC--------RVNHLM-GHENRVSCLQVSPDGTAFSSGSWDTT------LRCRLFDLRADKEV 193 (304)
Q Consensus 139 ~iwd~~~~~--------~~~~~~-~h~~~v~~v~~sp~~~~las~s~d~~------i~i~~~d~~~~~~~ 193 (304)
.+||+.+.+ .+.... .....- +++...++++++.|+.+.. -.+.+||+.+.+..
T Consensus 571 ~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 571 IIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 888876654 111110 011111 2233334778888885421 12467888776543
No 332
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.65 E-value=2.2 Score=37.85 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=34.7
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCcee--eeeecC------CcCcEEEEEECCC
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR--VNHLMG------HENRVSCLQVSPD 79 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~--~~~~~~------h~~~V~~l~~s~d 79 (304)
-.+++|.|+|.++++-...+.|++++..++.. +..+.. .......|+|+||
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence 57899999999887764445798888654432 222221 2456779999995
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.41 E-value=2 Score=36.31 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=28.9
Q ss_pred CCCEEEEeeC-C---------CcEEEEeCCCce--eeeeec-CCcCcEEEEEECCCCCeEEEEeCC
Q psy4754 37 SGRLLFAGYN-D---------YTINVWDSLKCC--RVNHLM-GHENRVSCLQVSPDGTAFSSGSWD 89 (304)
Q Consensus 37 ~g~~l~tg~~-d---------g~v~iwd~~~~~--~~~~~~-~h~~~V~~l~~s~d~~~l~sgs~D 89 (304)
++.+++.|+. + ..+.+||+.+.+ .+..+. .....-.++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 5777788876 2 468899987653 222222 1111122222 467788888765
No 334
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.36 E-value=2 Score=35.92 Aligned_cols=197 Identities=8% Similarity=-0.011 Sum_probs=94.5
Q ss_pred CCCCEEEEe--eCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCC------------ceEEEEeeeCC
Q psy4754 36 VSGRLLFAG--YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT------------TLRCRLFDLRA 101 (304)
Q Consensus 36 ~~g~~l~tg--~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~------------~i~~~~wd~~~ 101 (304)
++|..++-. ..++.+..-+.. |...+.+.. +.+ --+++++++|+=+.... .-.++..++..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~--~~~--~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSN--DTA--MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETT-SCSCEEEEE--EEE--EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCC-CCCCEEccC--Cce--eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 455554433 234544444443 322333321 223 34577888776554322 12234555554
Q ss_pred CeeEeEEeccceeeceeeeEEcCCCCEEEEEe--C--CCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeec-
Q psy4754 102 DKEVACYKKDSILFGATSVDFSVSGRLLFAGY--N--DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSW- 176 (304)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~--~--dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~- 176 (304)
.+... +... ....+++++++++-.. . ...|..-++.. .....+..+.. .+++|+++.|.-.+.
T Consensus 98 ~~~~~-l~~~------~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g 165 (302)
T 3s25_A 98 HGSTV-LDPD------PCIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPK 165 (302)
T ss_dssp CCCEE-EECS------CEEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTT
T ss_pred CcceE-eecC------CccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCC
Confidence 43221 1111 2346788888888776 3 34455555543 22333333322 345778877775554
Q ss_pred CCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC--CcEEEEeCCCceeeEEeeccccceEEEEEcc
Q psy4754 177 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND--YTINVWDSLKCCRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 177 d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d--~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp 254 (304)
... |...++........+. .. ....+.|++.+|+-...+ ..|..-++.... ...+.. ..+. .|+|
T Consensus 166 ~~~--Iy~~~l~g~~~~~l~~-~~-----~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~~--~~~~ 232 (302)
T 3s25_A 166 NGQ--LYRYDTASQSEALFYD-CN-----CYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANIE--HYNV 232 (302)
T ss_dssp TCC--EEEEETTTTEEEEEEC-SC-----EEEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCEE--EEEE
T ss_pred Cce--EEEEECCCCCEEEEeC-CC-----ccceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCcc--eEEE
Confidence 334 4566666554433332 11 122356888887765433 245444544322 222322 2332 3677
Q ss_pred CCCEEEEe
Q psy4754 255 DGTAFSSG 262 (304)
Q Consensus 255 ~g~~lasg 262 (304)
++..|.-+
T Consensus 233 ~g~~Iy~~ 240 (302)
T 3s25_A 233 YGSLIFYQ 240 (302)
T ss_dssp ETTEEEEE
T ss_pred CCCEEEEE
Confidence 77766543
No 335
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.88 E-value=2.7 Score=35.71 Aligned_cols=148 Identities=10% Similarity=0.132 Sum_probs=82.3
Q ss_pred CceeEEeecccc-ceEeeeeccccccc--eeEEEEcCCCCEEE-Eee------CCCcEEEEeCCCceeeeeecCCcCcEE
Q psy4754 3 KNHCRLFDLRAD-KEVACYKKDSILFG--ATSVDFSVSGRLLF-AGY------NDYTINVWDSLKCCRVNHLMGHENRVS 72 (304)
Q Consensus 3 ~~~v~~wd~~~~-~~~~~~~~~~~~~~--i~~~~~~~~g~~l~-tg~------~dg~v~iwd~~~~~~~~~~~~h~~~V~ 72 (304)
+..|.-|++.++ .+...+.++....+ |..-..+++.++++ +|= -.|.+.+|+.+.+ ..+.++||.+...
T Consensus 125 ~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~ 203 (365)
T 2xzh_A 125 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 203 (365)
T ss_dssp SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEE
T ss_pred CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeE
Confidence 345777777653 34445555433333 55666677888665 332 2488999998765 4455788866554
Q ss_pred EEEECCC---CCeEEEEeCCC-ceEEEEeeeCCC---eeE------eEE-eccceeeceeeeEEcCCCCEEEEEeCCCeE
Q psy4754 73 CLQVSPD---GTAFSSGSWDT-TLRCRLFDLRAD---KEV------ACY-KKDSILFGATSVDFSVSGRLLFAGYNDYTI 138 (304)
Q Consensus 73 ~l~~s~d---~~~l~sgs~D~-~i~~~~wd~~~~---~~~------~~~-~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i 138 (304)
.+.+..+ .+.+.-+.... .-|+.+.++... .+. ..+ ..+....=.-++.+++....++.-+.-|.+
T Consensus 204 ~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~i 283 (365)
T 2xzh_A 204 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI 283 (365)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEE
Confidence 3333211 11233222210 124567777432 111 100 111000002356677778889999999999
Q ss_pred EEecCCcccccee
Q psy4754 139 NVWDSLKCCRVNH 151 (304)
Q Consensus 139 ~iwd~~~~~~~~~ 151 (304)
++||+.++.++..
T Consensus 284 hlyDleTgt~i~~ 296 (365)
T 2xzh_A 284 HLYDLETGTCIYM 296 (365)
T ss_dssp EEEETTTCCEEEE
T ss_pred EEEEcccCcEEEE
Confidence 9999999887654
No 336
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.78 E-value=0.64 Score=42.30 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=78.1
Q ss_pred ceeEEEEcCCCcEEEEeec-CCceEEEEeeecCCce-----------EEEeecCceeeeeeEEEEcCCCCEEEEEeCCCc
Q psy4754 158 RVSCLQVSPDGTAFSSGSW-DTTLRCRLFDLRADKE-----------VACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 225 (304)
Q Consensus 158 ~v~~v~~sp~~~~las~s~-d~~i~i~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~ 225 (304)
+...+.++|||++++.++. +.++ .++|++.... ...-.. ....+....+|.++|.-+.+-.-|..
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptv--tV~d~~k~~~~~~~k~~~~~~~~~ae~-e~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTC--SMIAIDKLPDLFAGKLADPRDVIVGEP-ELGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBE--EEEEGGGHHHHHTTCCSCGGGGEEECC-BCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeE--EEEEeehhhhhhhccccCcccceEeec-cCCCcccEEEECCCCceEeeeeecce
Confidence 4557899999999887665 5554 5788764211 001111 11235678899999977777778999
Q ss_pred EEEEeCCCc----------eeeEEeeccccceEEEE-----EccCCCEEEEe---ecCCee----------eeccccccc
Q psy4754 226 INVWDSLKC----------CRVNHLMGHENRVSCLQ-----VSPDGTAFSSG---SWDTTL----------RDEESKNRY 277 (304)
Q Consensus 226 i~iwd~~~~----------~~~~~~~~h~~~i~~l~-----~sp~g~~lasg---s~D~~i----------~~~~~~~~~ 277 (304)
|--|++.+. ..+..+.-|.++-.-.+ -.|||++|++. |.|+.+ +|.|...+.
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 999997653 34555666665543322 26889999997 578776 355555555
Q ss_pred hhheee
Q psy4754 278 MQYLLR 283 (304)
Q Consensus 278 ~~~~~~ 283 (304)
|..+..
T Consensus 481 M~lv~D 486 (638)
T 3sbq_A 481 MKLVHD 486 (638)
T ss_dssp CEEEEE
T ss_pred eEEEec
Confidence 544444
No 337
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.54 E-value=5.3 Score=35.34 Aligned_cols=254 Identities=8% Similarity=0.053 Sum_probs=145.5
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeE
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 83 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l 83 (304)
..|-|-|+..++.... +....-+.-.+|..+.+|--. ..++.|+|+++.+.++.+.-.. .|.-=.|-.+.. |
T Consensus 48 ~~vvIiDl~~~~~~~r-----rpi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~-l 119 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIR-----RPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNT-V 119 (494)
T ss_dssp CEEEEEETTSTTSCEE-----EECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTE-E
T ss_pred CeEEEEECCCCCccee-----cccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCe-E
Confidence 3567777777543211 112234567789888887664 6799999999988887765433 454456654433 3
Q ss_pred EEEeCCCceEEEEeeeCC-CeeEeEEeccceeec--eeeeEEcCCCCEEEEEe-------CCCeEEEecCCccccceecc
Q psy4754 84 SSGSWDTTLRCRLFDLRA-DKEVACYKKDSILFG--ATSVDFSVSGRLLFAGY-------NDYTINVWDSLKCCRVNHLM 153 (304)
Q Consensus 84 ~sgs~D~~i~~~~wd~~~-~~~~~~~~~~~~~~~--~~~~~~s~~~~~l~sg~-------~dg~i~iwd~~~~~~~~~~~ 153 (304)
+-.. +.. |.-|++.. ..+...+..+..+.. +.....+++.++++..+ -.|.+.+|..+.. .-+.+.
T Consensus 120 ~lVT-~ta--VyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie 195 (494)
T 1bpo_A 120 ALVT-DNA--VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE 195 (494)
T ss_dssp EEEC-SSE--EEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEEC
T ss_pred EEEc-CCe--eEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchhe
Confidence 2222 334 46799864 345555655443322 34555678888776432 2467788875532 233456
Q ss_pred CcccceeEEEEcCC---CcEEEEeecCC-ceEEEEeeecCC---c-----e-EEE-eecCceeeeeeEEEEcCCCCEEEE
Q psy4754 154 GHENRVSCLQVSPD---GTAFSSGSWDT-TLRCRLFDLRAD---K-----E-VAC-YKKDSILFGATSVDFSVSGRLLFA 219 (304)
Q Consensus 154 ~h~~~v~~v~~sp~---~~~las~s~d~-~i~i~~~d~~~~---~-----~-~~~-~~~~~~~~~~~~~~~s~~g~~l~s 219 (304)
||-..-..+.+..+ .+.|+.+.... -.++.+.++... . . +.. +..+...--..++..++.-..+..
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 77544433333221 12344444321 023456666432 1 0 000 111111111346777888888888
Q ss_pred EeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCeee
Q psy4754 220 GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269 (304)
Q Consensus 220 g~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~ 269 (304)
-..-|-|++||+.++..+..-+=-..+|..-+..+...-++.....|.|-
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl 325 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 325 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred EecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence 88889999999999998866555566777766666656666666666553
No 338
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.95 E-value=12 Score=38.32 Aligned_cols=249 Identities=8% Similarity=0.039 Sum_probs=127.8
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCC-eE
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT-AF 83 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~-~l 83 (304)
+|-|-|+..++... .+....-+.-.+|..+.+|--. ..++.|+|+.+.+.++.+.- ..+|.-=.|-.+.. -|
T Consensus 49 ~vvIidl~~~~~~~-----rrpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~l 121 (1630)
T 1xi4_A 49 QVVIIDMNDPSNPI-----RRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVAL 121 (1630)
T ss_pred eEEEEECCCCCCcc-----cccccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEE
Confidence 46666666654321 1112234566688888777654 67999999988777766543 34565557755444 34
Q ss_pred EEEeCCCceEEEEeeeCC-CeeEeEEeccceee--ceeeeEEcCCCCEEEEEe-------CCCeEEEecCCccccceecc
Q psy4754 84 SSGSWDTTLRCRLFDLRA-DKEVACYKKDSILF--GATSVDFSVSGRLLFAGY-------NDYTINVWDSLKCCRVNHLM 153 (304)
Q Consensus 84 ~sgs~D~~i~~~~wd~~~-~~~~~~~~~~~~~~--~~~~~~~s~~~~~l~sg~-------~dg~i~iwd~~~~~~~~~~~ 153 (304)
+|. .. |.-|++.. ..+...+..+..+. .+.....+++.++++..+ -.|.+.+|..... ..+.+.
T Consensus 122 VT~---~a--VyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~ie 195 (1630)
T 1xi4_A 122 VTD---NA--VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE 195 (1630)
T ss_pred EcC---Ce--EEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhh
Confidence 443 23 46799864 23333333322221 234455677788766432 3578888875432 222345
Q ss_pred CcccceeEEEEc--C-CCcEEEEeecC--CceEEEEeeecCC-ceEEEe---------ecCceeeeeeEEEEcCCCCEEE
Q psy4754 154 GHENRVSCLQVS--P-DGTAFSSGSWD--TTLRCRLFDLRAD-KEVACY---------KKDSILFGATSVDFSVSGRLLF 218 (304)
Q Consensus 154 ~h~~~v~~v~~s--p-~~~~las~s~d--~~i~i~~~d~~~~-~~~~~~---------~~~~~~~~~~~~~~s~~g~~l~ 218 (304)
||-+.-..+.+. + ..+.|+.+... | .++.+.++... ..-..+ +.....--+.++..++.-..+.
T Consensus 196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g-~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy 274 (1630)
T 1xi4_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAG-GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (1630)
T ss_pred HhHhhhheeccCCCCCCceEEEEEEecCCC-ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEE
Confidence 665443333221 1 12233333221 1 13456665332 000111 1110001124566677777777
Q ss_pred EEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCe
Q psy4754 219 AGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 219 sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
.-..-|-|++||+.++..+..-+-...+|...+..+...-++..-..|.
T Consensus 275 ~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~ 323 (1630)
T 1xi4_A 275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ 323 (1630)
T ss_pred EEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCce
Confidence 7777899999999998776433323445554444443333333333343
No 339
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=91.89 E-value=6.4 Score=34.83 Aligned_cols=148 Identities=10% Similarity=0.130 Sum_probs=85.2
Q ss_pred CceeEEeecccc-ceEeeeeccccccc--eeEEEEcCCCCEEE-Eee------CCCcEEEEeCCCceeeeeecCCcCcEE
Q psy4754 3 KNHCRLFDLRAD-KEVACYKKDSILFG--ATSVDFSVSGRLLF-AGY------NDYTINVWDSLKCCRVNHLMGHENRVS 72 (304)
Q Consensus 3 ~~~v~~wd~~~~-~~~~~~~~~~~~~~--i~~~~~~~~g~~l~-tg~------~dg~v~iwd~~~~~~~~~~~~h~~~V~ 72 (304)
+..|.-|++.++ .+...+.++....+ |..-..+++.++++ +|= -.|.+.+|+.+.+ ..+.++||.+...
T Consensus 124 ~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 202 (494)
T ss_dssp SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEE
T ss_pred CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeE
Confidence 456888888754 34445555433333 66666678888765 332 3488999998764 4455788876655
Q ss_pred EEEECCCC---CeEEEEeCC-CceEEEEeeeCCC---eeEe---E----EeccceeeceeeeEEcCCCCEEEEEeCCCeE
Q psy4754 73 CLQVSPDG---TAFSSGSWD-TTLRCRLFDLRAD---KEVA---C----YKKDSILFGATSVDFSVSGRLLFAGYNDYTI 138 (304)
Q Consensus 73 ~l~~s~d~---~~l~sgs~D-~~i~~~~wd~~~~---~~~~---~----~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i 138 (304)
.+.+..+. +.+.-+... ..-++.+.++... .+.. . +..+....=..++.+++....++.-+.-|.+
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i 282 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI 282 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceE
Confidence 44443211 123323221 0124566777432 1100 0 0111000012356677888889999999999
Q ss_pred EEecCCcccccee
Q psy4754 139 NVWDSLKCCRVNH 151 (304)
Q Consensus 139 ~iwd~~~~~~~~~ 151 (304)
.+||+.++.++..
T Consensus 283 ~lyDleTgt~i~~ 295 (494)
T 1bpo_A 283 HLYDLETGTCIYM 295 (494)
T ss_dssp EEEETTTCCEEEE
T ss_pred EEEecccceeeee
Confidence 9999999887654
No 340
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=91.24 E-value=13 Score=37.21 Aligned_cols=244 Identities=13% Similarity=0.083 Sum_probs=125.0
Q ss_pred ceeEEeeccccceEeeeeccccccceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceee--eeecCCcCcEEEEEECCC--
Q psy4754 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRV--NHLMGHENRVSCLQVSPD-- 79 (304)
Q Consensus 4 ~~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~--~~~~~h~~~V~~l~~s~d-- 79 (304)
+.||+.+...++....+..+. ...|..++.. +.+++.++ .+.+.++.+..++.. ... .-...|.|+++.|.
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~-~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~ 566 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQ-AKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGD 566 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTT-CCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSS
T ss_pred CEEEEEECCCCeEEEEEECCC-CCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCC
Confidence 457888877655444443322 2346666654 34555554 678888887654321 111 12468999999863
Q ss_pred ----CCeEEEEeC-CCceEEEEeeeCCCeeEeEEeccc--eeeceeeeEEcCCCCEEEEEeCCCeEEEecC--Cccccce
Q psy4754 80 ----GTAFSSGSW-DTTLRCRLFDLRADKEVACYKKDS--ILFGATSVDFSVSGRLLFAGYNDYTINVWDS--LKCCRVN 150 (304)
Q Consensus 80 ----~~~l~sgs~-D~~i~~~~wd~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~--~~~~~~~ 150 (304)
+++++.|.| |+++ +++++..-+.+....... ...++.-+.+ ....++..|..||.+..+.+ .+++...
T Consensus 567 ~~~~s~~~aVg~~~d~tv--~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d~~tg~l~d 643 (1158)
T 3ei3_A 567 SNGLSPLCAIGLWTDISA--RILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALFYFGLNIETGLLSD 643 (1158)
T ss_dssp STTCCSEEEEEETTTTEE--EEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEEEEEECTTTCCEEE
T ss_pred CcccccEEEEEECCCCEE--EEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEcCCCCcccc
Confidence 368999998 9885 678887655543322211 1111222223 23457888999999876643 3332211
Q ss_pred ---eccCcccceeEEEEcCCCc-EEEEeecCCceEEEEeeecCCceEE-EeecCceeeeeeEEEEcCC--CCEEEEEeCC
Q psy4754 151 ---HLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVA-CYKKDSILFGATSVDFSVS--GRLLFAGYND 223 (304)
Q Consensus 151 ---~~~~h~~~v~~v~~sp~~~-~las~s~d~~i~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~s~~--g~~l~sg~~d 223 (304)
.+.| ..++.-..+...+. .+..+| +..- .++--. ++... ....... -....|+.. .+-++.. .+
T Consensus 644 ~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~--liy~~~-~~l~~s~l~~~~v---~~~~~F~se~~~~g~v~~-~~ 714 (1158)
T 3ei3_A 644 RKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPT--VIYSSN-HKLVFSNVNLKEV---NYMCPLNSDGYPDSLALA-NN 714 (1158)
T ss_dssp EEEEECC-SSCCEEEEEESSSCEEEEEES-SSCE--EEEESS-SSEEEEEBSSSCC---CEEEEECCSSSTTEEEEE-CS
T ss_pred ceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCE--EEEEcC-CceEEeccChHHh---ceEeccCcccCCCcEEEE-cC
Confidence 1223 23444334443333 333333 3432 233222 22111 1111110 123345432 2334433 35
Q ss_pred CcEEEEeCCCcee--eEEeeccccceEEEEEccCCCEEEEeecC
Q psy4754 224 YTINVWDSLKCCR--VNHLMGHENRVSCLQVSPDGTAFSSGSWD 265 (304)
Q Consensus 224 ~~i~iwd~~~~~~--~~~~~~h~~~i~~l~~sp~g~~lasgs~D 265 (304)
+.++|..+.+-.. ++++. -...+..++++|+.+.++.+..+
T Consensus 715 ~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 715 STLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp SCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEE
T ss_pred CceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEe
Confidence 5688886543222 23332 23578899999988877665543
No 341
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.22 E-value=8.6 Score=34.20 Aligned_cols=107 Identities=14% Similarity=0.084 Sum_probs=59.4
Q ss_pred eeeeEEcCCCC-EEEEEeCCCeEEEecCCcc---ccceec---c------CcccceeEEEEcCC----CcEEEEeecCC-
Q psy4754 117 ATSVDFSVSGR-LLFAGYNDYTINVWDSLKC---CRVNHL---M------GHENRVSCLQVSPD----GTAFSSGSWDT- 178 (304)
Q Consensus 117 ~~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~---~~~~~~---~------~h~~~v~~v~~sp~----~~~las~s~d~- 178 (304)
...++|.|++. .++.+...|.|++++.... ..+..+ . ........|+|+|+ +.++++-+.+.
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 45788999986 4556678899999974321 112111 1 11356789999996 55555443211
Q ss_pred ---------ceEEEEeeecC----------CceEEEeecCceeeeeeEEEEcCCCCEEEEEeCC
Q psy4754 179 ---------TLRCRLFDLRA----------DKEVACYKKDSILFGATSVDFSVSGRLLFAGYND 223 (304)
Q Consensus 179 ---------~i~i~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d 223 (304)
...|.-|.+.. .+.+..............++|.|||.++++.++.
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 11222344321 1223332211112235789999999988875543
No 342
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=89.73 E-value=18 Score=36.28 Aligned_cols=97 Identities=8% Similarity=0.010 Sum_probs=55.9
Q ss_pred eeEEeeccccceEeeeeccccccceeEEEEcCC------CCEEEEeeC-CCcEEEEeCCCceeeeeecC-CcCcEEEEEE
Q psy4754 5 HCRLFDLRADKEVACYKKDSILFGATSVDFSVS------GRLLFAGYN-DYTINVWDSLKCCRVNHLMG-HENRVSCLQV 76 (304)
Q Consensus 5 ~v~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~------g~~l~tg~~-dg~v~iwd~~~~~~~~~~~~-h~~~V~~l~~ 76 (304)
.+-++++..++.......+ ....|+|+++.|. +++++.|.. |++++|+++.+.+.+....- -.....++.+
T Consensus 533 ~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l 611 (1158)
T 3ei3_A 533 ALYYLQIHPQELRQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILM 611 (1158)
T ss_dssp EEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEE
T ss_pred EEEEEEeeCCceeeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEE
Confidence 4555555544322221212 2345999999763 369999986 99999999987655433211 1123344433
Q ss_pred CC--CCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 77 SP--DGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 77 s~--d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
.. ..-+|..|-.||.+....+|..++
T Consensus 612 ~~~~~~~~L~igl~dG~l~~~~~d~~tg 639 (1158)
T 3ei3_A 612 TTFESSHYLLCALGDGALFYFGLNIETG 639 (1158)
T ss_dssp EEETTEEEEEEEETTSEEEEEEECTTTC
T ss_pred EEeCCCcEEEEEeCCCeEEEEEEcCCCC
Confidence 32 234778888888864444554443
No 343
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=87.64 E-value=1.4 Score=37.60 Aligned_cols=113 Identities=9% Similarity=0.089 Sum_probs=58.3
Q ss_pred eEEEEeCCCceEEEEeeeCCCeeEeEEeccceeeceeeeE--EcCCCCEEEEE--eCCCeEEEecCCccccceeccC---
Q psy4754 82 AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD--FSVSGRLLFAG--YNDYTINVWDSLKCCRVNHLMG--- 154 (304)
Q Consensus 82 ~l~sgs~D~~i~~~~wd~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~l~sg--~~dg~i~iwd~~~~~~~~~~~~--- 154 (304)
.++.++.|+.+ .-.|..+++..+.++... ..+..... -.+.+..++.+ +.||.+..++..++...-.+..
T Consensus 12 ~V~v~t~dG~l--~Ald~~tG~~~W~~~~~~-~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 12 ILIAADVEGGL--HAVDRRNGHIIWSIEPEN-FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEETTSCE--EEEETTTTEEEEEECGGG-SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred EEEEEeCCCeE--EEEECCCCcEEEEecCCc-cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 56667777775 456767777777665431 00100000 00122244444 5788888888766532211110
Q ss_pred -cccceeE---EEE-c----CCCcEEEEeecCCceEEEEeeecCCceEEEeecC
Q psy4754 155 -HENRVSC---LQV-S----PDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKD 199 (304)
Q Consensus 155 -h~~~v~~---v~~-s----p~~~~las~s~d~~i~i~~~d~~~~~~~~~~~~~ 199 (304)
...++.. ..+ . -.+..+.+|+.++.+ .-.|+++++.+-.+...
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l--~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIM--YTINMLNGEIISAFGPG 140 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEE--EEEETTTCCEEEEESTT
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEE--EEEECCCCcEEEEEecC
Confidence 1111211 000 0 034578888888885 46788888877666543
No 344
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=86.67 E-value=15 Score=31.73 Aligned_cols=232 Identities=12% Similarity=0.123 Sum_probs=127.5
Q ss_pred eeEEEE-cCCCCEEEEeeC--C---CcEEEEeCCC-------ceee-eeecC-----CcCcEEEEEECCCCCeEE--EEe
Q psy4754 29 ATSVDF-SVSGRLLFAGYN--D---YTINVWDSLK-------CCRV-NHLMG-----HENRVSCLQVSPDGTAFS--SGS 87 (304)
Q Consensus 29 i~~~~~-~~~g~~l~tg~~--d---g~v~iwd~~~-------~~~~-~~~~~-----h~~~V~~l~~s~d~~~l~--sgs 87 (304)
.+.++. +.+|+++++-=. + -++-..+..+ .-.+ ..+.. +--.|..+.+-+.+++-+ +|-
T Consensus 28 P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~~~rLWVLDtG~ 107 (381)
T 3q6k_A 28 STAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDCRRLWVVDIGS 107 (381)
T ss_dssp CCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECTTCEEEEEECSS
T ss_pred eeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcCCCcEEEEeCCC
Confidence 356777 677787776522 2 2444444321 1122 33322 224677888877766432 332
Q ss_pred C-----------CCceEEEEeeeCCC--eeEeEEeccceee----ceeeeEEc---CC----CCEEEEEe-CCCeEEEec
Q psy4754 88 W-----------DTTLRCRLFDLRAD--KEVACYKKDSILF----GATSVDFS---VS----GRLLFAGY-NDYTINVWD 142 (304)
Q Consensus 88 ~-----------D~~i~~~~wd~~~~--~~~~~~~~~~~~~----~~~~~~~s---~~----~~~l~sg~-~dg~i~iwd 142 (304)
- -+.-++..||+.+. +.++.+....... ....+.+. ++ +.+++... ..+.|.++|
T Consensus 108 ~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVyd 187 (381)
T 3q6k_A 108 VEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYD 187 (381)
T ss_dssp CSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEE
T ss_pred cCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEE
Confidence 1 22336789999999 8888876432111 13445555 22 45666665 378899999
Q ss_pred CCccccceec--------------cCc----ccceeEEEEcCC----CcEEEEeecCCceEEEEeeecC-----C---ce
Q psy4754 143 SLKCCRVNHL--------------MGH----ENRVSCLQVSPD----GTAFSSGSWDTTLRCRLFDLRA-----D---KE 192 (304)
Q Consensus 143 ~~~~~~~~~~--------------~~h----~~~v~~v~~sp~----~~~las~s~d~~i~i~~~d~~~-----~---~~ 192 (304)
+.+++..+.. .|. ...|..++++|+ ++.+.-+...+. ++|.+.+ . ..
T Consensus 188 l~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~---~ly~V~T~~L~~~~~~~~ 264 (381)
T 3q6k_A 188 HKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI---KVYSVNTKELKQKGGKLN 264 (381)
T ss_dssp TTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS---EEEEEEHHHHSSTTCCCC
T ss_pred CCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC---cEEEEEHHHhhCcchhhc
Confidence 8875432211 111 246788999998 677776665554 3454321 1 11
Q ss_pred EEEeecCceeeeeeEEEEc-CCCCEEEEEeCCCcEEEEeCCC-c---eeeEEee--ccccceEEEEEccCCCEEEEee
Q psy4754 193 VACYKKDSILFGATSVDFS-VSGRLLFAGYNDYTINVWDSLK-C---CRVNHLM--GHENRVSCLQVSPDGTAFSSGS 263 (304)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~s-~~g~~l~sg~~d~~i~iwd~~~-~---~~~~~~~--~h~~~i~~l~~sp~g~~lasgs 263 (304)
+..+-...........++. .+|.++++--+...|..|+..+ . ..+..+. ..-..+..+++.++|...+..+
T Consensus 265 v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 265 PELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred eEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 2211111101122355675 6788888888888999999765 1 1112221 1234677888877777666654
No 345
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=85.65 E-value=14 Score=30.32 Aligned_cols=222 Identities=9% Similarity=-0.002 Sum_probs=103.1
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
.|..++......+++ . ||.|..|-....-.+..-..-...|..++...+...++ . |+.+ +.|-.....++..
T Consensus 25 ~i~~ia~G~~h~~~l--~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l--~-~G~v--~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL--K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL--K-DGEV--IAWGGNEDGQTTV 96 (282)
T ss_dssp SCCEEEECSSEEEEE--E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE--E-TTEE--EEEECCTTSTTCC
T ss_pred CCcEEEeCCCeEEEE--E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE--E-CCEE--EEeeCCCCCCCCC
Confidence 366676544333333 4 89999998654322211111123577777665433333 3 7774 5676554333221
Q ss_pred EeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeee
Q psy4754 108 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 187 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~ 187 (304)
... ....+..++.. ..+.+.-. +|.|..|-......+.........|..++...+...+. . |+.+ +.|-.
T Consensus 97 P~~--~~~~v~~ia~G--~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l--~-~G~v--~~wG~ 166 (282)
T 3qhy_B 97 PAE--ARSGVDAIAAG--AWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV--K-NGGV--IAWGD 166 (282)
T ss_dssp CGG--GSSSEEEEEEE--TTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--E-TTEE--EEEEC
T ss_pred Ccc--cCCCeEEEECc--CCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE--E-CCEE--EEecC
Confidence 111 01123344333 34445555 89999996443222211111224566666554432222 2 5664 44532
Q ss_pred cCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCCEEEEeecCCe
Q psy4754 188 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 267 (304)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~ 267 (304)
.....+.. +. .....+..++......+ +. .|+.+..|-....-.+..-..-...|..|+...+...+++ |+.
T Consensus 167 n~~gqlg~-p~-~~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~ 238 (282)
T 3qhy_B 167 NYFGQTTV-PA-EAQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGK 238 (282)
T ss_dssp CTTSTTSC-CG-GGGSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTE
T ss_pred CCCCCCCC-ce-ecCCCeEEEEecCCEEE-EE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCE
Confidence 22111110 00 01123444444333322 22 4889999953321111100011245777777655444444 899
Q ss_pred eeeccccc
Q psy4754 268 LRDEESKN 275 (304)
Q Consensus 268 i~~~~~~~ 275 (304)
+..|....
T Consensus 239 v~~wG~n~ 246 (282)
T 3qhy_B 239 VIAWGSSR 246 (282)
T ss_dssp EEEESTTC
T ss_pred EEEecCCC
Confidence 99997544
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=82.66 E-value=21 Score=30.19 Aligned_cols=112 Identities=8% Similarity=0.030 Sum_probs=61.2
Q ss_pred CEEEEeeCCCcEEEEeCCCceeeeeecCC-cCcEEEEEE--C-CCCCeEEEE-eCCCceEEEEeeeCCCeeEeEEeccce
Q psy4754 39 RLLFAGYNDYTINVWDSLKCCRVNHLMGH-ENRVSCLQV--S-PDGTAFSSG-SWDTTLRCRLFDLRADKEVACYKKDSI 113 (304)
Q Consensus 39 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~--s-~d~~~l~sg-s~D~~i~~~~wd~~~~~~~~~~~~~~~ 113 (304)
.+++.++.||.|.-.|..+|+..=++..- ..++....- . .++..++.. +.||.+ ..+|..++.....+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l--~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNI--YYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEE--EEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEE--EEEECCCCcEEeeeccccc
Confidence 46778889999999998888655433321 112211110 0 122333332 467774 4566655543332222111
Q ss_pred eeceeeeEEc-----------CCCCEEEEEeCCCeEEEecCCccccceecc
Q psy4754 114 LFGATSVDFS-----------VSGRLLFAGYNDYTINVWDSLKCCRVNHLM 153 (304)
Q Consensus 114 ~~~~~~~~~s-----------~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 153 (304)
. ....+... ..+..+++|+.++.+...|+.+++.+-++.
T Consensus 89 v-~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 89 V-STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp H-TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred e-eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 0 01112111 145678899999999999999988776654
No 347
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=81.18 E-value=20 Score=36.80 Aligned_cols=147 Identities=9% Similarity=0.083 Sum_probs=78.0
Q ss_pred CceeEEeeccccc-eEeeeecccc--ccceeEEEEcCCCCEEE-Ee------eCCCcEEEEeCCCceeeeeecCCcCcEE
Q psy4754 3 KNHCRLFDLRADK-EVACYKKDSI--LFGATSVDFSVSGRLLF-AG------YNDYTINVWDSLKCCRVNHLMGHENRVS 72 (304)
Q Consensus 3 ~~~v~~wd~~~~~-~~~~~~~~~~--~~~i~~~~~~~~g~~l~-tg------~~dg~v~iwd~~~~~~~~~~~~h~~~V~ 72 (304)
+..|--|++.++. +...|..+.. ...|..-.-+++.++++ +| .-.|.+.+|+.+.+ ..+.+.||.+...
T Consensus 124 ~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~ 202 (1630)
T 1xi4_A 124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 202 (1630)
T ss_pred CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhh
Confidence 4567788886532 2223333321 22255556677777665 33 24589999998754 3444667765544
Q ss_pred EEEECC---CCCeEEEEeC--CCceEEEEeeeCCC---eeEeE-------EeccceeeceeeeEEcCCCCEEEEEeCCCe
Q psy4754 73 CLQVSP---DGTAFSSGSW--DTTLRCRLFDLRAD---KEVAC-------YKKDSILFGATSVDFSVSGRLLFAGYNDYT 137 (304)
Q Consensus 73 ~l~~s~---d~~~l~sgs~--D~~i~~~~wd~~~~---~~~~~-------~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~ 137 (304)
.+.... ..+.+.-+.. .| -++.+.++... .+... ++.+....=..++.+++....++..+.-|.
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g-~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~ 281 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAG-GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY 281 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCC-ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce
Confidence 333321 1122222211 11 13466676432 11110 011100000234566777778888899999
Q ss_pred EEEecCCcccccee
Q psy4754 138 INVWDSLKCCRVNH 151 (304)
Q Consensus 138 i~iwd~~~~~~~~~ 151 (304)
+.++|+.++.++..
T Consensus 282 ~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 282 IHLYDLETGTCIYM 295 (1630)
T ss_pred EEEEecccchhhhh
Confidence 99999999887654
No 348
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=78.44 E-value=32 Score=29.63 Aligned_cols=167 Identities=10% Similarity=0.102 Sum_probs=91.2
Q ss_pred eeEEeecccc--ceEeeeecccc---cc-ceeEEEEc---CC----CCEEE-EeeCCCcEEEEeCCCceeeeeec-----
Q psy4754 5 HCRLFDLRAD--KEVACYKKDSI---LF-GATSVDFS---VS----GRLLF-AGYNDYTINVWDSLKCCRVNHLM----- 65 (304)
Q Consensus 5 ~v~~wd~~~~--~~~~~~~~~~~---~~-~i~~~~~~---~~----g~~l~-tg~~dg~v~iwd~~~~~~~~~~~----- 65 (304)
++-+||+.++ +++..+..... .. ....+++. |+ +.+++ |=+..+.|.++|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778999999 88777665321 11 26677776 22 33443 44457899999998875433221
Q ss_pred ---------CC----cCcEEEEEECCC----CCeEEEEeCCCceEEEEeeeCC-----C---eeEeEEeccceeeceeee
Q psy4754 66 ---------GH----ENRVSCLQVSPD----GTAFSSGSWDTTLRCRLFDLRA-----D---KEVACYKKDSILFGATSV 120 (304)
Q Consensus 66 ---------~h----~~~V~~l~~s~d----~~~l~sgs~D~~i~~~~wd~~~-----~---~~~~~~~~~~~~~~~~~~ 120 (304)
|. ...|..|+.+|+ ++.|.=...-+. +++.+.+ . ..+..+-.....-.....
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~---~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~ 280 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI---KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIAL 280 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS---EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC---cEEEEEHHHhhCcchhhceEEeeecCCCCCcceE
Confidence 11 247889999998 676665554443 3455431 1 111111111000011234
Q ss_pred EEc-CCCCEEEEEeCCCeEEEecCCc-cc---cceeccC--cccceeEEEEcCCCcEEEEe
Q psy4754 121 DFS-VSGRLLFAGYNDYTINVWDSLK-CC---RVNHLMG--HENRVSCLQVSPDGTAFSSG 174 (304)
Q Consensus 121 ~~s-~~~~~l~sg~~dg~i~iwd~~~-~~---~~~~~~~--h~~~v~~v~~sp~~~~las~ 174 (304)
++. .+|..+++--....|..|+..+ .- ....+.. ---.+..+.+.+++.+.+..
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 564 5677777777889999999764 11 1111111 11235566666666544443
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=72.43 E-value=40 Score=27.82 Aligned_cols=178 Identities=10% Similarity=0.048 Sum_probs=90.5
Q ss_pred EEEEcCCCCEEEEe-eCC-------------CcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEe--CCCceEE
Q psy4754 31 SVDFSVSGRLLFAG-YND-------------YTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS--WDTTLRC 94 (304)
Q Consensus 31 ~~~~~~~g~~l~tg-~~d-------------g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs--~D~~i~~ 94 (304)
+--++++|.+|+=. ..+ ..|+..++...+... +. ... +..|+++++.|+=.. .++.-.+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~--~~~--~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LD--PDP--CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EE--CSC--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-ee--cCC--ccEEEEeCCEEEEEeecCCCCceE
Confidence 34567888876544 333 456666666554222 21 122 236677888776544 3344334
Q ss_pred EEeeeCCCeeEeEEeccceeeceeeeEEcCCCCEEEEEeC-CCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEE
Q psy4754 95 RLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 173 (304)
Q Consensus 95 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las 173 (304)
...++.... ...+..+. ...++++++.|+..+. ...|.+-++.......-+.+ .. ...+.|++..++-
T Consensus 132 y~~~~dGs~-~~~lt~~~------~~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~-~~~~~P~g~~iy~ 200 (302)
T 3s25_A 132 YRIRIDGEE-KKKIKNHY------LFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NC-YKPVVLDDTNVYY 200 (302)
T ss_dssp EEEETTSCC-CEEEESSC------CCCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CE-EEEEEEETTEEEE
T ss_pred EEEECCCCC-eEEEeCCC------ceEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Cc-cceeeecCCEEEE
Confidence 555555332 22222221 1346778888887665 57777777654432211222 12 2245688888776
Q ss_pred eecCCceEEEEeeecCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeC--CCcEEEEeC
Q psy4754 174 GSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN--DYTINVWDS 231 (304)
Q Consensus 174 ~s~d~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~--d~~i~iwd~ 231 (304)
..++..-+|..-++..... ..+.... ...++|++.+|.-+.. ...|..-++
T Consensus 201 t~~~~~~~I~~~~ldG~~~-~~Lt~~~------~~~~~~~g~~Iy~~~~~~~~~i~~~~~ 253 (302)
T 3s25_A 201 MDVNRDNAIVHVNINNPNP-VVLTEAN------IEHYNVYGSLIFYQRGGDNPALCVVKN 253 (302)
T ss_dssp EEGGGTTEEEEECSSSCCC-EECSCSC------EEEEEEETTEEEEEECSSSCEEEEEET
T ss_pred EEcCCCcEEEEEECCCCCe-EEEeCCC------cceEEECCCEEEEEECCCCcEEEEEEC
Confidence 5544322334445554332 2222111 1237888888776532 234444444
No 350
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=67.46 E-value=52 Score=27.20 Aligned_cols=186 Identities=8% Similarity=0.021 Sum_probs=89.6
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCceeee---------eecCCcCcEEE-EEECCCCCeEEEEeCCCceEEEEeeeCCCee-
Q psy4754 36 VSGRLLFAGYNDYTINVWDSLKCCRVN---------HLMGHENRVSC-LQVSPDGTAFSSGSWDTTLRCRLFDLRADKE- 104 (304)
Q Consensus 36 ~~g~~l~tg~~dg~v~iwd~~~~~~~~---------~~~~h~~~V~~-l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~- 104 (304)
|+..++++.+.+|.|+--.+.+....+ .++.+ +.+.. +..+.....|+-.+..+.+++..+++.....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 456678899999999887765433221 12222 33433 3333333444444444455445566543211
Q ss_pred -----Ee---EEeccceeeceeee-EEc--CCCCEEEEEeCCCeEEEecCCcccc-------ceeccCcccceeEEEEcC
Q psy4754 105 -----VA---CYKKDSILFGATSV-DFS--VSGRLLFAGYNDYTINVWDSLKCCR-------VNHLMGHENRVSCLQVSP 166 (304)
Q Consensus 105 -----~~---~~~~~~~~~~~~~~-~~s--~~~~~l~sg~~dg~i~iwd~~~~~~-------~~~~~~h~~~v~~v~~sp 166 (304)
+. .+..... +..+ .+. .++.+++..+..|.++.-.+..... ...+..+ +.+..+....
T Consensus 80 a~G~~i~~~l~l~~~e~---i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDER---ITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp SCCEEGGGTSCCCTTCC---EEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC
T ss_pred CCCeEhhhccCCCCCCE---EEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC
Confidence 10 0111111 2222 221 3456788899999999986432111 1122233 5666655544
Q ss_pred CCcEEEEeecCCceEEEEeeecCCc-------eEE--EeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 167 DGTAFSSGSWDTTLRCRLFDLRADK-------EVA--CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 167 ~~~~las~s~d~~i~i~~~d~~~~~-------~~~--~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
+...++..+.++.+ + .++...-. -+. .+.... .+.++...+++..++..+..|.++-.++
T Consensus 156 ~~~~i~l~T~~G~~-i-rf~~~~v~~~gr~a~Gv~~i~L~~~d---~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~ 224 (307)
T 1zi0_A 156 GEDEVMLFSAEGKV-V-RFKESSVRAMGCNTTGVRGIRLGEGD---KVVSLIVPRGDGAILTATQNGYGKRTAV 224 (307)
T ss_dssp TTCEEEEEETTSEE-E-EEEGGGSCBCCTTCCCEECCCCCTTC---CEEEEECCCSSCEEEEEETTSEEEEECG
T ss_pred CCCEEEEECCCCcE-E-EEEHHHcCccCCCCCCeEeEEeCCCC---EEEEEEEecCCCEEEEEEcCCceEEEEH
Confidence 44455556666654 1 33332211 111 111111 2334444455667888888888887764
No 351
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=66.28 E-value=55 Score=27.10 Aligned_cols=188 Identities=8% Similarity=-0.042 Sum_probs=92.8
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCceeee---------eecCCcCcEEEEEECCCCCeEEEEeCCCc-eEEEEeeeCCCee
Q psy4754 35 SVSGRLLFAGYNDYTINVWDSLKCCRVN---------HLMGHENRVSCLQVSPDGTAFSSGSWDTT-LRCRLFDLRADKE 104 (304)
Q Consensus 35 ~~~g~~l~tg~~dg~v~iwd~~~~~~~~---------~~~~h~~~V~~l~~s~d~~~l~sgs~D~~-i~~~~wd~~~~~~ 104 (304)
-++..++++.+.+|.|+--.+......+ .++.. +.+..+........++-.+..|. +++..++++....
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 3567788999999999998875442221 12222 44444433333444444444443 3333444433211
Q ss_pred Ee---------EEeccceeeceeee-EEc--CCCCEEEEEeCCCeEEEecCCccc-------cceeccCcccceeEEEEc
Q psy4754 105 VA---------CYKKDSILFGATSV-DFS--VSGRLLFAGYNDYTINVWDSLKCC-------RVNHLMGHENRVSCLQVS 165 (304)
Q Consensus 105 ~~---------~~~~~~~~~~~~~~-~~s--~~~~~l~sg~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~v~~s 165 (304)
.. .+..... +..+ ... .++.+++..+..|.++.-.+.... ....+.. .+.+..+...
T Consensus 84 ~~~G~~i~~~l~l~~~e~---i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~ 159 (312)
T 1suu_A 84 ASKGQNISELINLGDQEE---ILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIV 159 (312)
T ss_dssp ----CBGGGTSCCCTTCC---EEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEE
T ss_pred cCCCcChhhccCCCCCCE---EEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEe
Confidence 00 0111111 1122 121 145678888999999988653221 1112222 4566666554
Q ss_pred CCCcEEEEeecCCceEEEEeeecCC-------ceEEEe--ecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy4754 166 PDGTAFSSGSWDTTLRCRLFDLRAD-------KEVACY--KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 232 (304)
Q Consensus 166 p~~~~las~s~d~~i~i~~~d~~~~-------~~~~~~--~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~ 232 (304)
.+...++..+.++.. ..++...- +-+..+ .... .+.++..-+++..+++.+..|..+..++.
T Consensus 160 ~~~~~i~l~T~~G~~--~r~~~~ev~~~gR~~~Gv~~i~L~~~d---~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 160 FKDEKVICLSKKGSA--FIFNSRDVRLTNRGTQGVCGMKLKEGD---LFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp CTTCEEEEEETTSEE--EEEEGGGSCBCCTTBCCEECCCCCTTC---CEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred CCCCEEEEEeCCCcE--EEEEHHHccccCCCCCCeEeEEeCCCC---EEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 445566677777765 24443321 111111 1111 23344444556777888888888888653
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=65.86 E-value=6.8 Score=35.79 Aligned_cols=77 Identities=13% Similarity=-0.008 Sum_probs=55.3
Q ss_pred eeEEEEcCCCCEEEEEe-CCCcEEEEeCCCcee-------------eEEeeccccceEEEEEccCCCEEEEeecCCeeee
Q psy4754 205 ATSVDFSVSGRLLFAGY-NDYTINVWDSLKCCR-------------VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRD 270 (304)
Q Consensus 205 ~~~~~~s~~g~~l~sg~-~d~~i~iwd~~~~~~-------------~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i~~ 270 (304)
...+.++|||+++++++ .+.++.++|..+-.. +.+.. -.-.....+|.++|..+.|---|..|--
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEE
Confidence 45788999999988865 567899998763111 22222 1234577899999988888889999999
Q ss_pred ccccccchhhee
Q psy4754 271 EESKNRYMQYLL 282 (304)
Q Consensus 271 ~~~~~~~~~~~~ 282 (304)
|++.....+|..
T Consensus 404 Wni~~a~~~~~g 415 (638)
T 3sbq_A 404 WNMEEAVRAYKG 415 (638)
T ss_dssp EEHHHHHHHHTT
T ss_pred EeccHHHHHhcC
Confidence 998776555543
No 353
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=63.33 E-value=28 Score=32.01 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=39.3
Q ss_pred eEEEEcCCCCEEEEeeCC------------CcEEEEeCCCceeeeeecCC-cCcEEEEEECCCCCeEEEE
Q psy4754 30 TSVDFSVSGRLLFAGYND------------YTINVWDSLKCCRVNHLMGH-ENRVSCLQVSPDGTAFSSG 86 (304)
Q Consensus 30 ~~~~~~~~g~~l~tg~~d------------g~v~iwd~~~~~~~~~~~~h-~~~V~~l~~s~d~~~l~sg 86 (304)
--|.|+|.|.+++.-..+ ..+.+.+..+++..+-+.++ ..+++.++|+||++.|+..
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 348899999977654332 13555566667665555554 4689999999999877654
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=61.55 E-value=11 Score=36.79 Aligned_cols=35 Identities=23% Similarity=0.129 Sum_probs=30.2
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeee
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 63 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~ 63 (304)
+.+++..++..+++|-+.|+++|+|++.+++++.+
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 56777778888999999999999999999887665
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=61.27 E-value=14 Score=36.21 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=31.1
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 205 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 205 ~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 456777889999999999999999999998887664
No 356
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=57.36 E-value=1.3e+02 Score=28.22 Aligned_cols=225 Identities=12% Similarity=0.045 Sum_probs=112.2
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeee--cC----CcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCC
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL--MG----HENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD 102 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~--~~----h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~ 102 (304)
|.++.-..+|.+-+ |. ++-+..||..+++..+-. .. ....|.++...+++++.+ |+..+-+ ..+|....
T Consensus 375 v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl--~~~~~~~~ 449 (758)
T 3ott_A 375 IRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGI--FVVDKHKL 449 (758)
T ss_dssp EEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCE--EEEEHHHH
T ss_pred eEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCce--EEEccccc
Confidence 77887777777554 33 457999998876543211 11 234688888777776554 4443332 45664320
Q ss_pred -----eeE---eEEecccee--eceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceecc--C--cccceeEEEEcCCC
Q psy4754 103 -----KEV---ACYKKDSIL--FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM--G--HENRVSCLQVSPDG 168 (304)
Q Consensus 103 -----~~~---~~~~~~~~~--~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~--h~~~v~~v~~sp~~ 168 (304)
... ..+...... ..+.++...+++...+.++..+.+..+|..+.+. ..+. . ....+.++....+|
T Consensus 450 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~-~~~~~~~~~~~~~~~~i~~d~~g 528 (758)
T 3ott_A 450 MQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREV-TKLFADELTGEKSPNYLLCDEDG 528 (758)
T ss_dssp HHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEE-EEECTTTSCGGGCEEEEEECTTS
T ss_pred cccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCce-EEecCCCcCCCcccceEEECCCC
Confidence 111 111111111 1245666777787665444455677888765432 2221 1 12467888888888
Q ss_pred cEEEEeecCCceEEEEeeecCCceEEEeecCce-eeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccce
Q psy4754 169 TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSI-LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV 247 (304)
Q Consensus 169 ~~las~s~d~~i~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i 247 (304)
++.+. +..+ +..++..+.+. ..+..... ...+.++.. .+|.+.+ ++..| +..+|..+.+. ..+.-....+
T Consensus 529 ~lWig-t~~G---l~~~~~~~~~~-~~~~~~gl~~~~i~~i~~-~~g~lWi-~t~~G-l~~~~~~~~~~-~~~~~~~~~~ 599 (758)
T 3ott_A 529 LLWVG-FHGG---VMRINPKDESQ-QSISFGSFSNNEILSMTC-VKNSIWV-STTNG-LWIIDRKTMDA-RQQNMTNKRF 599 (758)
T ss_dssp CEEEE-ETTE---EEEECC--CCC-CBCCCCC---CCEEEEEE-ETTEEEE-EESSC-EEEEETTTCCE-EEC--CCCCC
T ss_pred CEEEE-ecCc---eEEEecCCCce-EEecccCCCccceEEEEE-CCCCEEE-ECCCC-eEEEcCCCcee-EEecCCCCce
Confidence 76654 3444 24677654432 11111111 122455554 3565544 44444 66788766542 2221122233
Q ss_pred EEEEEc-cCCCEEEEeecCCeee
Q psy4754 248 SCLQVS-PDGTAFSSGSWDTTLR 269 (304)
Q Consensus 248 ~~l~~s-p~g~~lasgs~D~~i~ 269 (304)
....+. ++|..+. |+.++.++
T Consensus 600 ~~~~~~~~~G~l~f-G~~~Gl~~ 621 (758)
T 3ott_A 600 TSLLFDPKEDCVYL-GGADGFGI 621 (758)
T ss_dssp SEEEEETTTTEEEE-ECBSEEEE
T ss_pred eeeEEECCCCcEEE-ecCCceEE
Confidence 344443 4665554 44556544
No 357
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=56.50 E-value=1.3e+02 Score=28.12 Aligned_cols=226 Identities=10% Similarity=0.072 Sum_probs=117.4
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeee-cCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEe
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL-MGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVA 106 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~-~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~ 106 (304)
.|.++.-..+|.+- .|..+| +..||-.+.+..... ......|.++....++. |..|..++. ..+|..+.+-..
T Consensus 23 ~V~~I~qD~~G~lW-igT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigT~~Gl---~~yd~~~~~f~~ 96 (758)
T 3ott_A 23 VVSCFLQDSEGLIW-IGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTY-LYMGTDNGI---LVYNYRADRYEQ 96 (758)
T ss_dssp CEEEEEECTTSCEE-EEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTE-EEEEETTEE---EEEETTTTEECC
T ss_pred eEEEEEECCCCCEE-EEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCc-EEEEeCCCe---EEEeCCCCEEEC
Confidence 38888887777543 445666 667785432221111 11245688887766664 444454543 467876543221
Q ss_pred EEeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceecc-----CcccceeEEEEcCCCcEEEEeecCCceE
Q psy4754 107 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM-----GHENRVSCLQVSPDGTAFSSGSWDTTLR 181 (304)
Q Consensus 107 ~~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~v~~sp~~~~las~s~d~~i~ 181 (304)
........+.++.. .++ .+..++.+ .+..+|..+.+ +..+. -....|.++...+++.+.+ ++.++
T Consensus 97 --~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G--- 166 (758)
T 3ott_A 97 --PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRK-LTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG--- 166 (758)
T ss_dssp --CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCC-EEEECHHHHCCSCSCEEEEEECTTCCEEE-EETTE---
T ss_pred --cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCe-EEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC---
Confidence 00000112333433 344 45556655 67888865433 22220 1124688888888887655 33444
Q ss_pred EEEeeecCCceEEEeecCc----eeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCCC
Q psy4754 182 CRLFDLRADKEVACYKKDS----ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 257 (304)
Q Consensus 182 i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g~ 257 (304)
+..++..+.+. ..+.... ....+.++...+++..|-.|.. +-+..+|..+++......-....|.++...++|.
T Consensus 167 l~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~ 244 (758)
T 3ott_A 167 LCRYIPSNGKF-EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD 244 (758)
T ss_dssp EEEEETTTTEE-EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC
T ss_pred HhhCccCCCce-EEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC
Confidence 24677655432 2221110 0112566766777765555553 4577888766543211111235688888888877
Q ss_pred EEEEeecCCeeeeccc
Q psy4754 258 AFSSGSWDTTLRDEES 273 (304)
Q Consensus 258 ~lasgs~D~~i~~~~~ 273 (304)
+.+. +.+ -+..++.
T Consensus 245 lWig-T~~-Gl~~~~~ 258 (758)
T 3ott_A 245 LLAG-TDN-GLYVYHN 258 (758)
T ss_dssp EEEE-ETT-EEEEECC
T ss_pred EEEE-eCC-ceeEEec
Confidence 6654 344 4544544
No 358
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=55.89 E-value=80 Score=28.90 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=40.9
Q ss_pred eeeeEEEEcCCCCEEEEEeC------------CCcEEEEeCCCceeeEEeecc-ccceEEEEEccCCCEEEEe
Q psy4754 203 FGATSVDFSVSGRLLFAGYN------------DYTINVWDSLKCCRVNHLMGH-ENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 203 ~~~~~~~~s~~g~~l~sg~~------------d~~i~iwd~~~~~~~~~~~~h-~~~i~~l~~sp~g~~lasg 262 (304)
.....+.|.++|.+.++-.. ...+..++..+++...-+.+. ...++.++|+||++.|...
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 45678999999998884322 124666676666544434443 3578999999999877664
No 359
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=52.90 E-value=1e+02 Score=25.73 Aligned_cols=187 Identities=9% Similarity=0.006 Sum_probs=91.8
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCcee----eeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCe------eE
Q psy4754 36 VSGRLLFAGYNDYTINVWDSLKCCR----VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADK------EV 105 (304)
Q Consensus 36 ~~g~~l~tg~~dg~v~iwd~~~~~~----~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~------~~ 105 (304)
|+..++++.+.+|.|+--.+..... -..++..+.-+..+..+.....|+-.+..+.+++..+++.... ++
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence 5677888999999999877543211 1123333333333344444445555454555555556664322 11
Q ss_pred e---EEeccceeeceeee-EEcC--CCCEEEEEeCCCeEEEecCCcccc--------ceeccCcccceeEEEEcCCCcEE
Q psy4754 106 A---CYKKDSILFGATSV-DFSV--SGRLLFAGYNDYTINVWDSLKCCR--------VNHLMGHENRVSCLQVSPDGTAF 171 (304)
Q Consensus 106 ~---~~~~~~~~~~~~~~-~~s~--~~~~l~sg~~dg~i~iwd~~~~~~--------~~~~~~h~~~v~~v~~sp~~~~l 171 (304)
. .+.... .+..+ .+.. ++.+++.++..|.++.-.+..... ...+.. .+.+..+....+...+
T Consensus 83 ~~~i~L~~~e---~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 83 ANIIPIDRDE---EIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNEL 158 (323)
T ss_dssp GGTSCCCTTC---CEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEE
T ss_pred hhccCCCCCC---EEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEE
Confidence 0 011111 12222 2222 256788999999999976532211 111222 2556665554444456
Q ss_pred EEeecCCceEEEEeeecCCc-------eEEEe--ecCceeeeeeEEEEcCCCC-EEEEEeCCCcEEEEeC
Q psy4754 172 SSGSWDTTLRCRLFDLRADK-------EVACY--KKDSILFGATSVDFSVSGR-LLFAGYNDYTINVWDS 231 (304)
Q Consensus 172 as~s~d~~i~i~~~d~~~~~-------~~~~~--~~~~~~~~~~~~~~s~~g~-~l~sg~~d~~i~iwd~ 231 (304)
+..+.++.+ ..++...-. -+... .... .+.++...+++. .++..+..|..+..++
T Consensus 159 ~l~T~~G~~--irf~~~ev~~~gR~a~GV~~i~L~~~d---~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~ 223 (323)
T 1wp5_A 159 FLVTHNGYA--LWFDESEVSIVGVRAAGVKGMNLKEGD---YIVSGQLITSKDESIVVATQRGAVKKMKL 223 (323)
T ss_dssp EEEETTSEE--EEEEGGGSCBCCSSCCCEECCCCCTTC---CEEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred EEEeCCCcE--EEEEHHHCcccCCCCcCEEEEEeCCCC---EEEEEEEEcCCCcEEEEEECCCceEEEEH
Confidence 666667764 234332211 11111 1111 123333333344 7778888888777654
No 360
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.38 E-value=12 Score=37.55 Aligned_cols=35 Identities=23% Similarity=0.129 Sum_probs=29.2
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeee
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 63 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~ 63 (304)
+.+++..++..+++|-+.|+++|+|++.+++++.+
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 45566667888999999999999999999987665
No 361
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=52.16 E-value=68 Score=29.43 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=40.1
Q ss_pred eeeEEEEcCCCCEEEEEeCC------------CcEEEEeCCCceeeEEeecc-ccceEEEEEccCCCEEEEe
Q psy4754 204 GATSVDFSVSGRLLFAGYND------------YTINVWDSLKCCRVNHLMGH-ENRVSCLQVSPDGTAFSSG 262 (304)
Q Consensus 204 ~~~~~~~s~~g~~l~sg~~d------------~~i~iwd~~~~~~~~~~~~h-~~~i~~l~~sp~g~~lasg 262 (304)
.+-.++|+|.|.++++-..+ ..+.+.+..+++..+-+.++ ...++.+.|+||++.|...
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34678999999977664322 23455566666654445554 4689999999999877664
No 362
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=51.81 E-value=1.1e+02 Score=26.02 Aligned_cols=142 Identities=6% Similarity=-0.047 Sum_probs=74.1
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCce---------eeeeecCCcCcEEEEEECCCCC-eEEEEeCCCceEEEEeeeCCCe
Q psy4754 34 FSVSGRLLFAGYNDYTINVWDSLKCC---------RVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADK 103 (304)
Q Consensus 34 ~~~~g~~l~tg~~dg~v~iwd~~~~~---------~~~~~~~h~~~V~~l~~s~d~~-~l~sgs~D~~i~~~~wd~~~~~ 103 (304)
+-|+..++++.+.+|.||--.+.+.. .-..++ ..+.+..+....... .|+-.+..+.+++..+++....
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 34778899999999999987653321 111122 345565554444444 4444444555555567765321
Q ss_pred ------eEe---EEeccceeeceeee-EEc--CCCCEEEEEeCCCeEEEecCCcccc-------ceeccCcccceeEEEE
Q psy4754 104 ------EVA---CYKKDSILFGATSV-DFS--VSGRLLFAGYNDYTINVWDSLKCCR-------VNHLMGHENRVSCLQV 164 (304)
Q Consensus 104 ------~~~---~~~~~~~~~~~~~~-~~s--~~~~~l~sg~~dg~i~iwd~~~~~~-------~~~~~~h~~~v~~v~~ 164 (304)
++. .+..... +..+ .+. .++.+++.++..|.++.-.+..... ...+.. .+.+..+..
T Consensus 82 r~a~G~~i~~ll~L~~~e~---Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~ 157 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGER---VQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVAL 157 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCC---EEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEE
T ss_pred cccCCcCHhhccCCCCCCE---EEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEE
Confidence 110 0111111 2222 222 2356899999999999876433211 112222 345555555
Q ss_pred cCCCcEEEEeecCCce
Q psy4754 165 SPDGTAFSSGSWDTTL 180 (304)
Q Consensus 165 sp~~~~las~s~d~~i 180 (304)
..+...++..+.++.+
T Consensus 158 ~~~~~~i~l~T~~G~~ 173 (370)
T 3l6v_A 158 TDGDRDVLLFASNGKT 173 (370)
T ss_dssp ECSCCEEEEEETTSEE
T ss_pred eCCCceEEEEeCCCeE
Confidence 4444456656666654
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=51.27 E-value=14 Score=37.05 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=29.8
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEe
Q psy4754 206 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 240 (304)
Q Consensus 206 ~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~ 240 (304)
.+++..++..++++-+.|+++|||++.+++++.+.
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 45566788899999999999999999999887764
No 364
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=49.45 E-value=63 Score=29.58 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=40.4
Q ss_pred eeEEEEcCCCCEEEEeeC------------CCcEEEEeCCCceeeeeecCC-cCcEEEEEECCCCCeEEEEe
Q psy4754 29 ATSVDFSVSGRLLFAGYN------------DYTINVWDSLKCCRVNHLMGH-ENRVSCLQVSPDGTAFSSGS 87 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~------------dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~s~d~~~l~sgs 87 (304)
-.-|.|.++|.+.++... ...+..++..+++..+-+.+. ...+..++|+||++.|+.+-
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 457999999987773321 125667777777655544433 35789999999998877653
No 365
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.20 E-value=28 Score=32.77 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=27.3
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeee
Q psy4754 29 ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 64 (304)
Q Consensus 29 i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~ 64 (304)
|.++.+ +..+++|-+.|.++|+||+.+++++.+.
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 555554 4679999999999999999999876654
No 366
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=46.72 E-value=1.5e+02 Score=26.06 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=32.8
Q ss_pred eeEEEEcCCCC--EEEEeeCCCcEEEEeCCCc---eeeeeec---C------CcCcEEEEEECCC
Q psy4754 29 ATSVDFSVSGR--LLFAGYNDYTINVWDSLKC---CRVNHLM---G------HENRVSCLQVSPD 79 (304)
Q Consensus 29 i~~~~~~~~g~--~l~tg~~dg~v~iwd~~~~---~~~~~~~---~------h~~~V~~l~~s~d 79 (304)
-.+|+|.|+|. +|+ +...|.|++++.... +.+..+. . .......|+|+|+
T Consensus 16 P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFI-LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp EEEEECCSSSSCCEEE-EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred ceEEEECCCCCeEEEE-EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 46899999996 554 467899999975422 1111111 1 1456789999996
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=44.40 E-value=1.4e+02 Score=24.91 Aligned_cols=186 Identities=12% Similarity=0.047 Sum_probs=92.4
Q ss_pred CCEEEEeeCCCcEEEEeCCCceee-------e--eecCCcCcEEEEEE-CCCCCeEEEEeCCCceEEEEeeeCCCe----
Q psy4754 38 GRLLFAGYNDYTINVWDSLKCCRV-------N--HLMGHENRVSCLQV-SPDGTAFSSGSWDTTLRCRLFDLRADK---- 103 (304)
Q Consensus 38 g~~l~tg~~dg~v~iwd~~~~~~~-------~--~~~~h~~~V~~l~~-s~d~~~l~sgs~D~~i~~~~wd~~~~~---- 103 (304)
.+.+++-+.+|.|+--++.+.... . .++ ..+.+..+.. +.....|+-.+..+..++..+++....
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 456788889999987664322111 1 111 2344544433 333344444444555555567775431
Q ss_pred --eEeE---Eeccceeeceeee-EEc--CCCCEEEEEeCCCeEEEecCCccccc-------eeccCcccceeEEEEcCCC
Q psy4754 104 --EVAC---YKKDSILFGATSV-DFS--VSGRLLFAGYNDYTINVWDSLKCCRV-------NHLMGHENRVSCLQVSPDG 168 (304)
Q Consensus 104 --~~~~---~~~~~~~~~~~~~-~~s--~~~~~l~sg~~dg~i~iwd~~~~~~~-------~~~~~h~~~v~~v~~sp~~ 168 (304)
++.. +.... .+..+ .+. ++..+++..+.+|.++.-.+...... ..+.. .+.+..+......
T Consensus 82 G~~i~~~l~l~~~e---~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~ 157 (327)
T 3uc1_A 82 GQHVANLLAFQPEE---RIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAG 157 (327)
T ss_dssp CEEHHHHTTCCTTC---CEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTT
T ss_pred CEEHHHccCCCCCC---EEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCC
Confidence 1100 11111 12222 222 24678999999999998765432211 12222 3556555554444
Q ss_pred cEEEEeecCCce-EEEEe--eecCCce----EE--EeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy4754 169 TAFSSGSWDTTL-RCRLF--DLRADKE----VA--CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 231 (304)
Q Consensus 169 ~~las~s~d~~i-~i~~~--d~~~~~~----~~--~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~ 231 (304)
..++..+..+.+ ++.+. +++.... +. .+.... .+.++...+++.+++..+..|.++.-.+
T Consensus 158 d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d---~Vv~~~~~~~~~~ll~~T~~G~~Krt~l 226 (327)
T 3uc1_A 158 DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDD---RLLSLNVVREGTYLLVATSGGYAKRTAI 226 (327)
T ss_dssp CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTC---CEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCC---EEEEEEEECCCCEEEEEeCCCcEEEEEH
Confidence 556666666654 22223 3322110 11 111111 2345545556678888889998887653
No 368
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=43.36 E-value=1.4e+02 Score=24.63 Aligned_cols=143 Identities=8% Similarity=-0.042 Sum_probs=68.7
Q ss_pred CCCCEEEEEeCCCeEEEecCCccccce---------eccCcccceeEEEEcCCCcEEEEeecCCceE-EEEeeecCCceE
Q psy4754 124 VSGRLLFAGYNDYTINVWDSLKCCRVN---------HLMGHENRVSCLQVSPDGTAFSSGSWDTTLR-CRLFDLRADKEV 193 (304)
Q Consensus 124 ~~~~~l~sg~~dg~i~iwd~~~~~~~~---------~~~~h~~~v~~v~~sp~~~~las~s~d~~i~-i~~~d~~~~~~~ 193 (304)
++..+++..+.+|.|+--.+....... .+. -.+.+..+........++..+..+.+. +..++++.....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 345677888889999876543321111 111 123444444443444555556666531 122233222111
Q ss_pred E---------EeecCceeeeeeEEEEcC---CCCEEEEEeCCCcEEEEeCC-------CceeeEEeeccccceEEEEEcc
Q psy4754 194 A---------CYKKDSILFGATSVDFSV---SGRLLFAGYNDYTINVWDSL-------KCCRVNHLMGHENRVSCLQVSP 254 (304)
Q Consensus 194 ~---------~~~~~~~~~~~~~~~~s~---~g~~l~sg~~d~~i~iwd~~-------~~~~~~~~~~h~~~i~~l~~sp 254 (304)
. .+..... +.++...+ ++++++..+..|.++--.+. .+...-.+.. .+.+..+....
T Consensus 85 ~~G~~i~~~l~l~~~e~---i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~ 160 (312)
T 1suu_A 85 SKGQNISELINLGDQEE---ILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVF 160 (312)
T ss_dssp ---CBGGGTSCCCTTCC---EEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEEC
T ss_pred CCCcChhhccCCCCCCE---EEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeC
Confidence 0 1111111 22222222 46778888899999887653 2222222333 34555555554
Q ss_pred CCCEEEEeecCCeeeec
Q psy4754 255 DGTAFSSGSWDTTLRDE 271 (304)
Q Consensus 255 ~g~~lasgs~D~~i~~~ 271 (304)
+...++..+.++.+.-+
T Consensus 161 ~~~~i~l~T~~G~~~r~ 177 (312)
T 1suu_A 161 KDEKVICLSKKGSAFIF 177 (312)
T ss_dssp TTCEEEEEETTSEEEEE
T ss_pred CCCEEEEEeCCCcEEEE
Confidence 45667777777775544
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=43.35 E-value=30 Score=32.61 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=26.1
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCceeeEEee
Q psy4754 211 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 241 (304)
Q Consensus 211 s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~ 241 (304)
..+..++++-+.|+++|+|++.+++.+.+..
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 3457899999999999999999998776643
No 370
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=42.68 E-value=1.3e+02 Score=24.22 Aligned_cols=202 Identities=11% Similarity=0.081 Sum_probs=92.4
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeeeecCCcCcEEEEEECCCCCeEEEEeCCCceEEEEeeeCCCeeEeE
Q psy4754 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVAC 107 (304)
Q Consensus 28 ~i~~~~~~~~g~~l~tg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~sgs~D~~i~~~~wd~~~~~~~~~ 107 (304)
.|..++......+++ . ||.|..|-....-.+..-..-...|..++...+....+ . |+.+ +.|-.....++..
T Consensus 64 ~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al--~-~G~v--~~wG~n~~gqlg~ 135 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYAL--K-DGKV--IAWGDDSDGQTTV 135 (282)
T ss_dssp CCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEE--E-TTEE--EEEECCTTSTTSC
T ss_pred CEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEE--e-CCeE--EEecCCCCCcCCC
Confidence 366666654433333 4 89999998654322111000124677777765443343 3 7774 6677654333211
Q ss_pred EeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecCCccccceeccCcccceeEEEEcCCCcEEEEeecCCceEEEEeee
Q psy4754 108 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDL 187 (304)
Q Consensus 108 ~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~d~~i~i~~~d~ 187 (304)
... ....+..++.. ..+.+.-. ||.|..|-......+.....-...|..++...+. .++. .|+.+ +.|=.
T Consensus 136 ~~~--~~~~i~~i~~G--~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v--~~wG~ 205 (282)
T 3qhy_B 136 PAE--AQSGVTALDGG--VYTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKV--IAWGD 205 (282)
T ss_dssp CGG--GGSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEE--EEEEC
T ss_pred Ccc--CCCCeEEEEcc--cCEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeE--EEEEC
Confidence 111 11123333332 33333334 7999999644322221111112457777665443 2333 47775 45532
Q ss_pred cCCceEEEeecCceeeeeeEEEEcCCCCEEEEEeCCCcEEEEeCCCceeeEEeeccccceEEEEEccCC
Q psy4754 188 RADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 256 (304)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~i~~l~~sp~g 256 (304)
.....+.. +. .....+..++......++++ |+.+..|-.....++. -...|.+|+-.+..
T Consensus 206 n~~gqlg~-p~-~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~gq~~----v~~~v~~iaaG~~h 265 (282)
T 3qhy_B 206 NRYKQTTV-PT-EALSGVSAIASGEWYSLALK---NGKVIAWGSSRTAPSS----VQSGVSSIEAGPNA 265 (282)
T ss_dssp CTTSTTCC-CG-GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCCCCGG----GSSCEEEEEECSSC
T ss_pred CCCCCCCC-Cc-ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCCcccc----CCCCcEEEEECcCe
Confidence 22111110 10 11123455554444433333 8899999543322221 12355555555443
No 371
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=39.94 E-value=1.6e+02 Score=24.24 Aligned_cols=56 Identities=9% Similarity=-0.026 Sum_probs=31.3
Q ss_pred CCCCEEEEEeCCCcEEEEeCC-------CceeeEEeeccccceEEEEEccCCCEEEEeecCCee
Q psy4754 212 VSGRLLFAGYNDYTINVWDSL-------KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 268 (304)
Q Consensus 212 ~~g~~l~sg~~d~~i~iwd~~-------~~~~~~~~~~h~~~i~~l~~sp~g~~lasgs~D~~i 268 (304)
+++++++..+..|.++--.+. .+...-.+..+ +.+..+....+...++..+.++.+
T Consensus 107 ~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~ 169 (307)
T 1zi0_A 107 EEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKV 169 (307)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEE
T ss_pred CCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcE
Confidence 356788889999999887543 12222223334 444444444444555556555554
No 372
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=27.31 E-value=2.6e+02 Score=23.08 Aligned_cols=141 Identities=6% Similarity=-0.060 Sum_probs=66.5
Q ss_pred CCCCEEEEEeCCCeEEEecCCcccc--c--eeccCcccceeEEEEcCCCcEEEEeecCCce-EEEEeeecCCce----E-
Q psy4754 124 VSGRLLFAGYNDYTINVWDSLKCCR--V--NHLMGHENRVSCLQVSPDGTAFSSGSWDTTL-RCRLFDLRADKE----V- 193 (304)
Q Consensus 124 ~~~~~l~sg~~dg~i~iwd~~~~~~--~--~~~~~h~~~v~~v~~sp~~~~las~s~d~~i-~i~~~d~~~~~~----~- 193 (304)
|+...+++.+.+|.|+--.+..... . ..+.. .+.+..+........++..+..+.+ ++..++++.... .
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 4456778888899888764332111 0 11122 2344444433334444444555542 333344433221 0
Q ss_pred ----EEeecCceeeeeeEE-EEcC--CCCEEEEEeCCCcEEEEeCC--------CceeeEEeeccccceEEEEEccCCCE
Q psy4754 194 ----ACYKKDSILFGATSV-DFSV--SGRLLFAGYNDYTINVWDSL--------KCCRVNHLMGHENRVSCLQVSPDGTA 258 (304)
Q Consensus 194 ----~~~~~~~~~~~~~~~-~~s~--~g~~l~sg~~d~~i~iwd~~--------~~~~~~~~~~h~~~i~~l~~sp~g~~ 258 (304)
..+.... .+.++ ...+ ++.+++..+..|.++--.+. .+...-.+..- +.+..+........
T Consensus 82 i~~~i~L~~~e---~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~ 157 (323)
T 1wp5_A 82 IANIIPIDRDE---EIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNE 157 (323)
T ss_dssp GGGTSCCCTTC---CEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSE
T ss_pred hhhccCCCCCC---EEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCE
Confidence 0111111 12322 2332 36788889999999987643 12221123222 44545444444556
Q ss_pred EEEeecCCeee
Q psy4754 259 FSSGSWDTTLR 269 (304)
Q Consensus 259 lasgs~D~~i~ 269 (304)
|+..+.++.+-
T Consensus 158 i~l~T~~G~~i 168 (323)
T 1wp5_A 158 LFLVTHNGYAL 168 (323)
T ss_dssp EEEEETTSEEE
T ss_pred EEEEeCCCcEE
Confidence 66666666543
No 373
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=27.29 E-value=2.7e+02 Score=23.12 Aligned_cols=103 Identities=12% Similarity=0.037 Sum_probs=55.2
Q ss_pred CCCEEEEeeCCCcEEEEeCCCceee-------eeecCCcCcEEEEEECCCCCeEEEEeCCC-ceEEEEe--eeCCC----
Q psy4754 37 SGRLLFAGYNDYTINVWDSLKCCRV-------NHLMGHENRVSCLQVSPDGTAFSSGSWDT-TLRCRLF--DLRAD---- 102 (304)
Q Consensus 37 ~g~~l~tg~~dg~v~iwd~~~~~~~-------~~~~~h~~~V~~l~~s~d~~~l~sgs~D~-~i~~~~w--d~~~~---- 102 (304)
+..+++..+.+|.++.-.+...... -.++. .+.+..+........|+..+..| .+++.+. +++..
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 5679999999999999987653321 12333 34455444433344444444444 4433444 44321
Q ss_pred eeEeE--EeccceeeceeeeEEcCCCCEEEEEeCCCeEEEecC
Q psy4754 103 KEVAC--YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 143 (304)
Q Consensus 103 ~~~~~--~~~~~~~~~~~~~~~s~~~~~l~sg~~dg~i~iwd~ 143 (304)
.-... +.... .+..+...+++.+++..+..|.++.-.+
T Consensus 187 ~Gv~~i~L~~~d---~Vv~~~~~~~~~~ll~~T~~G~~Krt~l 226 (327)
T 3uc1_A 187 SGVQGMRFNIDD---RLLSLNVVREGTYLLVATSGGYAKRTAI 226 (327)
T ss_dssp BCEESSCCCTTC---CEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred CCeeeecCCCCC---EEEEEEEECCCCEEEEEeCCCcEEEEEH
Confidence 11111 11111 1233333345668888999999888654
Done!