RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4754
(304 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 167 bits (425), Expect = 3e-50
Identities = 88/244 (36%), Positives = 114/244 (46%), Gaps = 16/244 (6%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
V S G L +G +D TI +WD V L GH + VS + SPDG SS S D
Sbjct: 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD 114
Query: 90 TTLRCRLFDLRADKEVACYK--KDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLK 145
T +++D+ K + + D + SV FS G + + D TI +WD + K
Sbjct: 115 KT--IKVWDVETGKCLTTLRGHTDWV----NSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168
Query: 146 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGA 205
C L GH V+ + SPDG S S D T +L+DL K + + G
Sbjct: 169 CVAT--LTGHTGEVNSVAFSPDGEKLLSSSSDGT--IKLWDLSTGKCLGTLRGHEN--GV 222
Query: 206 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 265
SV FS G LL +G D TI VWD V L GH N V+ L SPDG +SGS D
Sbjct: 223 NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282
Query: 266 TTLR 269
T+R
Sbjct: 283 GTIR 286
Score = 133 bits (336), Expect = 5e-37
Identities = 96/248 (38%), Positives = 123/248 (49%), Gaps = 24/248 (9%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 89
T V FS G+LL G D TI VWD + L GH V + S DGT +SGS D
Sbjct: 13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD 72
Query: 90 TTLRCRLFDLRADKEVACYK--KDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLK 145
T RL+DL + V + +SV FS GR+L + D TI VWD + K
Sbjct: 73 KT--IRLWDLETGECVRTLTGHTSYV----SSVAFSPDGRILSSSSRDKTIKVWDVETGK 126
Query: 146 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK--KDSILF 203
C L GH + V+ + SPDGT +S S D T+ +L+DLR K VA +
Sbjct: 127 CLTT--LRGHTDWVNSVAFSPDGTFVASSSQDGTI--KLWDLRTGKCVATLTGHTGEV-- 180
Query: 204 GATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 261
SV FS G L + +D TI +WD + KC L GHEN V+ + SPDG +S
Sbjct: 181 --NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT--LRGHENGVNSVAFSPDGYLLAS 236
Query: 262 GSWDTTLR 269
GS D T+R
Sbjct: 237 GSEDGTIR 244
Score = 128 bits (323), Expect = 3e-35
Identities = 68/215 (31%), Positives = 99/215 (46%), Gaps = 20/215 (9%)
Query: 61 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK--KDSILFGAT 118
L GH V+C+ SPDG ++GS D T+ +++DL + + K +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTI--KVWDLETGELLRTLKGHTGPV----R 55
Query: 119 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 178
V S G L +G +D TI +WD V L GH + VS + SPDG SS S D
Sbjct: 56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDK 115
Query: 179 TLRCRLFDLRADKEVACYK--KDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKC 234
T +++D+ K + + D + SV FS G + + D TI +WD + KC
Sbjct: 116 T--IKVWDVETGKCLTTLRGHTDWV----NSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169
Query: 235 CRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
L GH V+ + SPDG S S D T++
Sbjct: 170 VAT--LTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202
Score = 120 bits (302), Expect = 5e-32
Identities = 63/180 (35%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 6 CRLFDLRADKEVACYK--KDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRV 61
+++D+ K + + D + SV FS G + + D TI +WD + KC
Sbjct: 117 IKVWDVETGKCLTTLRGHTDWV----NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172
Query: 62 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVD 121
L GH V+ + SPDG S S D T +L+DL K + + G SV
Sbjct: 173 --LTGHTGEVNSVAFSPDGEKLLSSSSDGT--IKLWDLSTGKCLGTLRGHEN--GVNSVA 226
Query: 122 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181
FS G LL +G D TI VWD V L GH N V+ L SPDG +SGS D T+R
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286
Score = 117 bits (294), Expect = 7e-31
Identities = 84/233 (36%), Positives = 115/233 (49%), Gaps = 26/233 (11%)
Query: 6 CRLFDLRADKEVACYK--KDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRV 61
RL+DL + V + +SV FS GR+L + D TI VWD + KC
Sbjct: 75 IRLWDLETGECVRTLTGHTSYV----SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT 130
Query: 62 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYK--KDSILFGATS 119
L GH + V+ + SPDGT +S S D T++ L+DLR K VA + S
Sbjct: 131 --LRGHTDWVNSVAFSPDGTFVASSSQDGTIK--LWDLRTGKCVATLTGHTGEV----NS 182
Query: 120 VDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 177
V FS G L + +D TI +WD + KC L GHEN V+ + SPDG +SGS D
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT--LRGHENGVNSVAFSPDGYLLASGSED 240
Query: 178 TTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 230
T R++DLR + V + TS+ +S G+ L +G D TI +WD
Sbjct: 241 GT--IRVWDLRTGECVQTLSGHTN--SVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 73.9 bits (182), Expect = 3e-15
Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 63
+L+DL K + + G SV FS G LL +G D TI VWD V
Sbjct: 199 GTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT 256
Query: 64 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93
L GH N V+ L SPDG +SGS D T+R
Sbjct: 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIR 286
Score = 29.6 bits (67), Expect = 1.7
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 4 NHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 54
R++DLR + V + TS+ +S G+ L +G D TI +WD
Sbjct: 241 GTIRVWDLRTGECVQTLSGHTN--SVTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 100 bits (249), Expect = 8e-24
Identities = 100/273 (36%), Positives = 138/273 (50%), Gaps = 18/273 (6%)
Query: 3 KNHCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY-NDYTINVWD-SLKCCR 60
+L+DLR K ++ + +S+ FS G LL A +D TI +WD S
Sbjct: 177 DGTIKLWDLRTGKPLSTLAGHTD--PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234
Query: 61 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRAD-KEVACYKKDSILFGATS 119
+ L GH + V SPDG+ +SGS D T RL+DLR+ + S S
Sbjct: 235 RSTLSGHSDSVVSS-FSPDGSLLASGSSDGT--IRLWDLRSSSSLLRTLSGHS--SSVLS 289
Query: 120 VDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDG-TAFSSGSW 176
V FS G+LL +G +D T+ +WD + K L GHE VS L SPDG S GS
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
Query: 177 DTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCR 236
D T+R L+DLR K + + S SV FS GR++ +G D T+ +WD
Sbjct: 350 DGTIR--LWDLRTGKPLKTLEGHS---NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL 404
Query: 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
+ +L GH +RV+ L SPDG + +SGS D T+R
Sbjct: 405 LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437
Score = 83.2 bits (204), Expect = 8e-18
Identities = 83/246 (33%), Positives = 118/246 (47%), Gaps = 11/246 (4%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWDSL--KCCRVNHLMGHENRVSCLQV-SPDGTAFSSG 86
TS+ FS G LL +G +D TI +WD + + H++ VS L + SPDG +
Sbjct: 69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128
Query: 87 SWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINVWDSLK 145
S +L+DL ++ + TS+ FS G+LL +G D TI +WD
Sbjct: 129 SSSLDGTVKLWDLSTPGKLIRTLEGHSESV-TSLAFSPDGKLLASGSSLDGTIKLWDLRT 187
Query: 146 CCRVNHLMGHENRVSCLQVSPDGT-AFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFG 204
++ L GH + VS L SPDG +SGS D T+ RL+DL K +
Sbjct: 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI--RLWDLSTGKLLRSTLSGHS--D 243
Query: 205 ATSVDFSVSGRLLFAGYNDYTINVWD-SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 263
+ FS G LL +G +D TI +WD + L GH + V + SPDG +SGS
Sbjct: 244 SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303
Query: 264 WDTTLR 269
D T+R
Sbjct: 304 SDGTVR 309
Score = 82.8 bits (203), Expect = 1e-17
Identities = 73/211 (34%), Positives = 99/211 (46%), Gaps = 9/211 (4%)
Query: 33 DFSVSGRLLFAGYNDYTINVWD-SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 91
FS G LL +G +D TI +WD + L GH + V + SPDG +SGS D T
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT 307
Query: 92 LRCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDSLKCCRVN 150
+R L+DL K ++ +S+ FS G L+ G +D TI +WD +
Sbjct: 308 VR--LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK 365
Query: 151 HLMGHENRVSCLQVSPDGTAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 210
L GH N V + SPDG SSGS D T RL+DL + D TS+DF
Sbjct: 366 TLEGHSN-VLSVSFSPDGRVVSSGSTDGT--VRLWDLSTGSLL--RNLDGHTSRVTSLDF 420
Query: 211 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 241
S G+ L +G +D TI +WD +
Sbjct: 421 SPDGKSLASGSSDNTIRLWDLKTSLKSVSFS 451
Score = 78.6 bits (192), Expect = 2e-16
Identities = 77/213 (36%), Positives = 108/213 (50%), Gaps = 13/213 (6%)
Query: 4 NHCRLFDLRAD-KEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCR 60
RL+DLR+ + S SV FS G+LL +G +D T+ +WD + K
Sbjct: 263 GTIRLWDLRSSSSLLRTLSGHS--SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320
Query: 61 VNHLMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATS 119
L GHE VS L SPDG S GS D T+R L+DLR K + + S S
Sbjct: 321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR--LWDLRTGKPLKTLEGHS---NVLS 375
Query: 120 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 179
V FS GR++ +G D T+ +WD + +L GH +RV+ L SPDG + +SGS D T
Sbjct: 376 VSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435
Query: 180 LRCRLFDLRADKEVACYKKDSILFGATSVDFSV 212
+ RL+DL+ + + D + + S D SV
Sbjct: 436 I--RLWDLKTSLKSVSFSPDGKVLASKSSDLSV 466
Score = 75.9 bits (185), Expect = 2e-15
Identities = 74/241 (30%), Positives = 107/241 (44%), Gaps = 14/241 (5%)
Query: 34 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93
S SG LL A +D +++ D L GHE+ ++ + SPDG SGS D T++
Sbjct: 35 SSESGILLLALLSDSLVSLPDL----SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIK 90
Query: 94 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA-GYNDYTINVWD-SLKCCRVNH 151
D + ++ +L A D T+ +WD S +
Sbjct: 91 LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150
Query: 152 LMGHENRVSCLQVSPDG-TAFSSGSWDTTLRCRLFDLRADKEVACYKKDSILFGATSVDF 210
L GH V+ L SPDG S S D T+ +L+DLR K ++ + +S+ F
Sbjct: 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTI--KLWDLRTGKPLSTLAGHTD--PVSSLAF 206
Query: 211 SVSGRLLFAGY-NDYTINVWD-SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 268
S G LL A +D TI +WD S + L GH + V SPDG+ +SGS D T+
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTI 265
Query: 269 R 269
R
Sbjct: 266 R 266
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 36.6 bits (85), Expect = 6e-04
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 58 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 93
+ L GH V+ + SPDG +SGS D T+R
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVR 36
Score = 36.6 bits (85), Expect = 6e-04
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 146 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 181
+ L GH V+ + SPDG +SGS D T+R
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVR 36
Score = 36.6 bits (85), Expect = 6e-04
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 234 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
+ L GH V+ + SPDG +SGS D T+R
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVR 36
Score = 30.8 bits (70), Expect = 0.069
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWD 54
TSV FS G LL +G +D T+ VWD
Sbjct: 15 TSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 30.8 bits (70), Expect = 0.069
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 118 TSVDFSVSGRLLFAGYNDYTINVWD 142
TSV FS G LL +G +D T+ VWD
Sbjct: 15 TSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 30.8 bits (70), Expect = 0.069
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 206 TSVDFSVSGRLLFAGYNDYTINVWD 230
TSV FS G LL +G +D T+ VWD
Sbjct: 15 TSVAFSPDGNLLASGSDDGTVRVWD 39
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats
(blades) of the beta propeller domain.
Length = 40
Score = 35.8 bits (83), Expect = 0.001
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 61 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 94
+ L GH V+ + SPDG +SGS D T++
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKL 38
Score = 35.8 bits (83), Expect = 0.001
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 149 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRC 182
+ L GH V+ + SPDG +SGS D T++
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKL 38
Score = 35.4 bits (82), Expect = 0.001
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 237 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 269
+ L GH V+ + SPDG +SGS D T++
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIK 37
Score = 28.8 bits (65), Expect = 0.32
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 30 TSVDFSVSGRLLFAGYNDYTINVWD 54
TSV FS G+ L +G +D TI +WD
Sbjct: 16 TSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 28.8 bits (65), Expect = 0.32
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 118 TSVDFSVSGRLLFAGYNDYTINVWD 142
TSV FS G+ L +G +D TI +WD
Sbjct: 16 TSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 28.8 bits (65), Expect = 0.32
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 206 TSVDFSVSGRLLFAGYNDYTINVWD 230
TSV FS G+ L +G +D TI +WD
Sbjct: 16 TSVAFSPDGKYLASGSDDGTIKLWD 40
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 34.3 bits (78), Expect = 0.086
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 17/147 (11%)
Query: 47 DYTINVWDSLKCCRVNHLMGHENRVSCLQV-SPDGTAFSSGSWDTTLRCRLFDLRADKEV 105
+ + VWD + V + HE RV + S D T +SGS D ++ +L+ + +
Sbjct: 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSV--KLWSINQGVSI 611
Query: 106 ACYKKDSILFGATSVDF-SVSGRLLFAGYNDYTINVWD----SLKCCRVNHLMGHENRVS 160
K + V F S SGR L G D+ + +D L C ++GH VS
Sbjct: 612 GTIKTKA---NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT---MIGHSKTVS 665
Query: 161 CLQVSPDGTAFSSGSWDTTLRCRLFDL 187
++ D + S S D TL +L+DL
Sbjct: 666 YVRFV-DSSTLVSSSTDNTL--KLWDL 689
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 32.2 bits (73), Expect = 0.33
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 28 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 87
G S S L AG D +NVWD + V + H ++++ L+ + DG+ + S
Sbjct: 129 GIVSFHPSAMNVLASAGA-DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS 187
Query: 88 WDTTLRCRLFDLRADKEVA 106
D L + D R V+
Sbjct: 188 KDKKL--NIIDPRDGTIVS 204
Score = 32.2 bits (73), Expect = 0.33
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 116 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 175
G S S L AG D +NVWD + V + H ++++ L+ + DG+ + S
Sbjct: 129 GIVSFHPSAMNVLASAGA-DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS 187
Query: 176 WDTTLRCRLFDLRADKEVA 194
D L + D R V+
Sbjct: 188 KDKKL--NIIDPRDGTIVS 204
Score = 32.2 bits (73), Expect = 0.37
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 204 GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 263
G S S L AG D +NVWD + V + H ++++ L+ + DG+ + S
Sbjct: 129 GIVSFHPSAMNVLASAGA-DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS 187
Query: 264 WDTTLR 269
D L
Sbjct: 188 KDKKLN 193
>gnl|CDD|234887 PRK01001, PRK01001, putative inner membrane protein translocase
component YidC; Provisional.
Length = 795
Score = 30.2 bits (68), Expect = 1.5
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 198 KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP--D 255
K ++LF + V + G +F GY D + C+ + + R Q+ +
Sbjct: 3 KRTLLF-VSLVSAAFLGCQIFFGYRD--------FRSCQD---LAEKQRAISEQILAATE 50
Query: 256 GTAFSSGSWDTTLRDEESKNRY 277
S W T+L +EESKN+Y
Sbjct: 51 SVGLSVVPWTTSLEEEESKNQY 72
>gnl|CDD|225889 COG3353, FlaF, Putative archaeal flagellar protein F [Cell motility
and secretion].
Length = 137
Score = 27.9 bits (62), Expect = 4.0
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 22 KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV 71
K +LF T V F+VS + LF YTI V + + N
Sbjct: 83 KFDVLFNGTYVSFNVSKKYLFPL-ESYTITVPGGTGPYSLEIVTPDGNEY 131
Score = 27.9 bits (62), Expect = 4.0
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 110 KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV 159
K +LF T V F+VS + LF YTI V + + N
Sbjct: 83 KFDVLFNGTYVSFNVSKKYLFPL-ESYTITVPGGTGPYSLEIVTPDGNEY 131
Score = 27.9 bits (62), Expect = 4.0
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 198 KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV 247
K +LF T V F+VS + LF YTI V + + N
Sbjct: 83 KFDVLFNGTYVSFNVSKKYLFPL-ESYTITVPGGTGPYSLEIVTPDGNEY 131
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.434
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,945,196
Number of extensions: 1351327
Number of successful extensions: 994
Number of sequences better than 10.0: 1
Number of HSP's gapped: 941
Number of HSP's successfully gapped: 38
Length of query: 304
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 208
Effective length of database: 6,679,618
Effective search space: 1389360544
Effective search space used: 1389360544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.5 bits)