Query psy4755
Match_columns 147
No_of_seqs 258 out of 1052
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 16:51:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06497 ACD_alphaA-crystallin_ 99.9 1.5E-24 3.3E-29 149.7 10.7 81 16-99 6-86 (86)
2 cd06498 ACD_alphaB-crystallin_ 99.9 2.1E-24 4.4E-29 148.6 10.7 81 17-100 4-84 (84)
3 cd06476 ACD_HspB2_like Alpha c 99.9 3.3E-24 7.2E-29 147.3 11.1 81 16-99 3-83 (83)
4 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 3.2E-24 7E-29 147.1 10.8 80 17-99 4-83 (83)
5 KOG3591|consensus 99.9 8.9E-23 1.9E-27 157.4 13.8 103 17-123 69-171 (173)
6 PRK10743 heat shock protein Ib 99.9 6.9E-23 1.5E-27 152.7 12.4 90 18-114 43-137 (137)
7 cd06477 ACD_HspB3_Like Alpha c 99.9 5.9E-23 1.3E-27 141.2 11.0 79 17-98 4-82 (83)
8 cd06475 ACD_HspB1_like Alpha c 99.9 1E-22 2.2E-27 140.6 10.3 80 16-98 6-85 (86)
9 PRK11597 heat shock chaperone 99.9 2E-22 4.3E-27 151.1 12.7 99 11-116 30-137 (142)
10 cd06480 ACD_HspB8_like Alpha-c 99.9 3.4E-22 7.4E-27 139.6 10.6 82 15-99 10-91 (91)
11 COG0071 IbpA Molecular chapero 99.9 9.4E-22 2E-26 147.2 12.7 94 16-114 46-146 (146)
12 PF00011 HSP20: Hsp20/alpha cr 99.9 2.8E-21 6.1E-26 135.3 13.4 94 17-114 4-102 (102)
13 cd06481 ACD_HspB9_like Alpha c 99.9 1.1E-21 2.3E-26 135.8 10.3 80 17-99 4-87 (87)
14 cd06526 metazoan_ACD Alpha-cry 99.9 1.6E-21 3.4E-26 133.1 10.2 77 19-99 6-83 (83)
15 cd06479 ACD_HspB7_like Alpha c 99.9 2.2E-21 4.8E-26 132.8 9.8 78 16-99 4-81 (81)
16 cd06482 ACD_HspB10 Alpha cryst 99.8 3E-20 6.4E-25 128.8 10.3 79 18-99 6-87 (87)
17 cd06472 ACD_ScHsp26_like Alpha 99.8 3.7E-20 8.1E-25 128.4 10.1 80 16-99 5-92 (92)
18 cd06471 ACD_LpsHSP_like Group 99.8 3.8E-19 8.1E-24 123.3 9.1 79 16-99 6-93 (93)
19 cd06470 ACD_IbpA-B_like Alpha- 99.8 2.2E-18 4.7E-23 119.5 10.7 75 19-99 10-90 (90)
20 cd06464 ACD_sHsps-like Alpha-c 99.8 6.1E-18 1.3E-22 114.0 9.2 80 16-99 3-88 (88)
21 cd00298 ACD_sHsps_p23-like Thi 99.5 2.2E-13 4.8E-18 88.2 9.4 78 17-99 3-80 (80)
22 KOG0710|consensus 99.5 5.1E-14 1.1E-18 110.5 7.3 96 15-114 89-195 (196)
23 cd06469 p23_DYX1C1_like p23_li 99.2 2E-10 4.3E-15 76.5 8.6 68 18-102 4-71 (78)
24 cd06463 p23_like Proteins cont 98.8 4.7E-08 1E-12 64.5 8.4 73 18-102 4-76 (84)
25 PF05455 GvpH: GvpH; InterPro 98.5 9.9E-07 2.1E-11 68.4 8.6 70 19-103 100-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.3 3.1E-06 6.7E-11 56.6 7.6 73 18-102 5-77 (84)
27 PF08190 PIH1: pre-RNA process 97.8 0.00014 3E-09 60.1 9.0 67 18-98 259-327 (328)
28 PF04969 CS: CS domain; Inter 97.8 0.00051 1.1E-08 44.6 9.8 72 18-99 8-79 (79)
29 cd06465 p23_hB-ind1_like p23_l 97.3 0.0034 7.3E-08 44.3 9.6 71 18-101 8-78 (108)
30 cd06467 p23_NUDC_like p23_like 97.1 0.0035 7.6E-08 41.8 7.5 71 18-102 6-77 (85)
31 cd06489 p23_CS_hSgt1_like p23_ 97.1 0.0051 1.1E-07 41.3 8.3 73 18-102 5-77 (84)
32 cd06468 p23_CacyBP p23_like do 96.9 0.015 3.3E-07 39.4 9.4 77 17-102 8-85 (92)
33 cd06493 p23_NUDCD1_like p23_NU 96.8 0.023 4.9E-07 38.4 9.1 71 18-102 6-77 (85)
34 cd06494 p23_NUDCD2_like p23-li 96.4 0.043 9.3E-07 38.2 8.5 70 18-102 13-83 (93)
35 cd06488 p23_melusin_like p23_l 96.1 0.085 1.8E-06 35.8 8.9 73 18-102 8-80 (87)
36 cd00237 p23 p23 binds heat sho 95.1 0.48 1E-05 33.7 9.9 71 18-102 9-79 (106)
37 cd06492 p23_mNUDC_like p23-lik 94.6 0.41 8.9E-06 32.7 8.1 73 18-102 6-79 (87)
38 PLN03088 SGT1, suppressor of 90.9 1.4 3.1E-05 37.2 8.0 73 18-102 164-236 (356)
39 cd06495 p23_NUDCD3_like p23-li 89.9 4.4 9.6E-05 28.6 8.6 73 18-101 12-86 (102)
40 KOG1309|consensus 84.4 6.7 0.00015 30.9 7.4 72 18-101 11-82 (196)
41 KOG2265|consensus 72.0 22 0.00047 27.8 6.8 70 19-102 27-97 (179)
42 PF04972 BON: BON domain; Int 71.3 9 0.0002 23.7 4.0 23 33-55 13-35 (64)
43 cd06482 ACD_HspB10 Alpha cryst 71.2 6.4 0.00014 26.9 3.4 34 67-102 9-42 (87)
44 PF14913 DPCD: DPCD protein fa 70.7 28 0.0006 27.6 7.2 71 16-101 92-170 (194)
45 cd06477 ACD_HspB3_Like Alpha c 70.3 11 0.00024 25.5 4.4 31 21-53 51-82 (83)
46 cd06464 ACD_sHsps-like Alpha-c 69.8 10 0.00022 24.3 4.2 33 18-52 54-86 (88)
47 PF13349 DUF4097: Domain of un 66.4 28 0.00062 25.2 6.4 59 38-97 86-148 (166)
48 cd06480 ACD_HspB8_like Alpha-c 66.2 13 0.00027 25.7 4.1 31 20-52 58-89 (91)
49 cd06472 ACD_ScHsp26_like Alpha 66.2 12 0.00025 25.2 3.9 33 18-52 58-90 (92)
50 cd06490 p23_NCB5OR p23_like do 66.0 37 0.00081 22.7 9.4 74 18-102 6-80 (87)
51 cd06526 metazoan_ACD Alpha-cry 65.2 11 0.00025 24.8 3.7 31 20-52 50-81 (83)
52 PF00011 HSP20: Hsp20/alpha cr 65.1 12 0.00027 25.2 3.9 38 18-57 53-90 (102)
53 cd06478 ACD_HspB4-5-6 Alpha-cr 64.7 13 0.00027 24.9 3.8 33 67-101 8-40 (83)
54 PRK10743 heat shock protein Ib 64.3 20 0.00043 26.5 5.1 33 68-102 47-79 (137)
55 cd06470 ACD_IbpA-B_like Alpha- 63.1 13 0.00027 25.1 3.6 35 67-103 12-46 (90)
56 cd06476 ACD_HspB2_like Alpha c 61.7 13 0.00028 25.0 3.4 33 67-101 8-40 (83)
57 cd06479 ACD_HspB7_like Alpha c 61.3 14 0.0003 24.9 3.5 32 20-53 48-80 (81)
58 cd06481 ACD_HspB9_like Alpha c 60.3 15 0.00033 24.8 3.6 32 19-52 53-85 (87)
59 cd06471 ACD_LpsHSP_like Group 59.9 17 0.00036 24.3 3.8 30 20-52 62-91 (93)
60 PRK05518 rpl6p 50S ribosomal p 56.8 44 0.00095 25.9 6.1 19 36-54 13-31 (180)
61 cd06497 ACD_alphaA-crystallin_ 56.8 21 0.00044 24.1 3.8 29 22-52 55-84 (86)
62 PTZ00027 60S ribosomal protein 56.5 35 0.00076 26.7 5.5 47 36-98 13-59 (190)
63 PRK11597 heat shock chaperone 56.4 31 0.00068 25.7 5.0 32 68-101 45-76 (142)
64 TIGR03653 arch_L6P archaeal ri 54.5 62 0.0013 24.8 6.5 19 36-54 7-25 (170)
65 KOG3158|consensus 54.4 71 0.0015 25.0 6.8 72 17-102 14-85 (180)
66 cd06469 p23_DYX1C1_like p23_li 53.8 36 0.00078 21.6 4.5 34 20-55 36-69 (78)
67 COG0071 IbpA Molecular chapero 52.4 32 0.00068 25.3 4.5 37 18-56 98-134 (146)
68 cd06475 ACD_HspB1_like Alpha c 51.8 27 0.00058 23.5 3.7 33 67-101 11-43 (86)
69 CHL00140 rpl6 ribosomal protei 51.6 53 0.0011 25.3 5.8 19 36-54 12-30 (178)
70 KOG3591|consensus 49.1 24 0.00052 27.2 3.5 35 20-56 115-150 (173)
71 cd06498 ACD_alphaB-crystallin_ 48.3 34 0.00074 22.9 3.8 31 21-53 51-82 (84)
72 PF07873 YabP: YabP family; I 43.3 18 0.0004 23.2 1.8 22 33-54 22-43 (66)
73 PRK11198 LysM domain/BON super 43.2 33 0.00072 25.4 3.4 24 32-55 38-61 (147)
74 PTZ00179 60S ribosomal protein 42.6 43 0.00092 26.2 4.0 19 36-54 12-30 (189)
75 TIGR02856 spore_yqfC sporulati 38.1 25 0.00055 23.9 1.9 22 33-54 40-61 (85)
76 TIGR02892 spore_yabP sporulati 35.0 33 0.00072 23.5 2.1 22 33-54 21-42 (85)
77 KOG3413|consensus 33.8 21 0.00046 27.1 1.0 24 74-98 65-88 (156)
78 PF14913 DPCD: DPCD protein fa 32.9 43 0.00093 26.5 2.6 37 19-55 129-169 (194)
79 PF08845 SymE_toxin: Toxin Sym 32.9 65 0.0014 20.3 3.0 21 32-52 36-57 (57)
80 cd00503 Frataxin Frataxin is a 32.8 47 0.001 23.4 2.6 17 81-98 28-44 (105)
81 TIGR03654 L6_bact ribosomal pr 32.2 47 0.001 25.5 2.8 18 36-53 11-28 (175)
82 PRK05498 rplF 50S ribosomal pr 31.0 50 0.0011 25.4 2.7 18 36-53 12-29 (178)
83 TIGR03421 FeS_CyaY iron donor 28.5 61 0.0013 22.8 2.6 17 82-99 26-42 (102)
84 PRK10568 periplasmic protein; 27.9 97 0.0021 24.1 3.9 24 32-55 73-96 (203)
85 PF01954 DUF104: Protein of un 27.5 38 0.00083 21.6 1.3 32 81-115 3-34 (60)
86 PRK00446 cyaY frataxin-like pr 27.0 60 0.0013 23.0 2.4 17 83-100 29-45 (105)
87 PF00347 Ribosomal_L6: Ribosom 26.6 74 0.0016 20.2 2.6 46 36-98 2-47 (77)
88 TIGR02921 PEP_integral PEP-CTE 26.3 2.5E+02 0.0055 26.6 6.6 64 35-102 417-485 (952)
89 PF08308 PEGA: PEGA domain; I 25.2 1.8E+02 0.0039 18.1 4.4 32 18-52 33-65 (71)
90 COG0097 RplF Ribosomal protein 24.6 1.3E+02 0.0029 23.4 4.1 20 35-54 11-30 (178)
91 cd02178 GH16_beta_agarase Beta 24.6 2.4E+02 0.0053 22.4 5.8 37 41-77 60-110 (258)
92 PF01491 Frataxin_Cyay: Fratax 23.5 69 0.0015 22.6 2.1 18 81-99 30-47 (109)
93 cd02175 GH16_lichenase lichena 23.1 2.6E+02 0.0056 21.5 5.5 50 34-87 29-88 (212)
94 TIGR03422 mito_frataxin fratax 22.7 70 0.0015 22.3 2.0 15 84-99 30-44 (97)
95 PF14014 DUF4230: Protein of u 22.1 1E+02 0.0022 22.3 2.9 24 30-53 53-76 (157)
96 PRK10568 periplasmic protein; 22.1 1.4E+02 0.003 23.3 3.8 23 32-54 152-174 (203)
97 PRK11023 outer membrane lipopr 20.8 1.5E+02 0.0033 22.8 3.7 25 31-55 139-163 (191)
98 PRK02913 hypothetical protein; 20.5 74 0.0016 24.2 1.8 14 86-99 113-126 (150)
No 1
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.92 E-value=1.5e-24 Score=149.72 Aligned_cols=81 Identities=37% Similarity=0.735 Sum_probs=74.1
Q ss_pred cccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEE
Q psy4755 16 IRKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTI 95 (147)
Q Consensus 16 ~d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I 95 (147)
.+++++|.|.++|| ||+++||+|++.++.|+|+|++.+..++.+|++++|+|+|.||.+||.++|+|+|++||+|+|
T Consensus 6 ~e~~~~~~v~~dlp---G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I 82 (86)
T cd06497 6 RSDRDKFTIYLDVK---HFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTF 82 (86)
T ss_pred EEcCCEEEEEEECC---CCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEE
Confidence 45899999999877 999999999999999999999876656668999999999999999999999999955999999
Q ss_pred EEeC
Q psy4755 96 TAPK 99 (147)
Q Consensus 96 ~~PK 99 (147)
++||
T Consensus 83 ~~PK 86 (86)
T cd06497 83 SGPK 86 (86)
T ss_pred EecC
Confidence 9997
No 2
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.92 E-value=2.1e-24 Score=148.56 Aligned_cols=81 Identities=42% Similarity=0.766 Sum_probs=73.7
Q ss_pred ccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEE
Q psy4755 17 RKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 96 (147)
Q Consensus 17 d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 96 (147)
..+++|.|.++|| ||+++||+|++.++.|+|+|+++...++.+|++++|+|+|.||.+||.++|+|+|++||+|+|+
T Consensus 4 ~~~~~~~v~~dlp---G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~ 80 (84)
T cd06498 4 LEKDKFSVNLDVK---HFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVC 80 (84)
T ss_pred eCCceEEEEEECC---CCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEE
Confidence 3688999999877 9999999999999999999988766666789999999999999999999999999449999999
Q ss_pred EeCc
Q psy4755 97 APKR 100 (147)
Q Consensus 97 ~PK~ 100 (147)
+||.
T Consensus 81 lPk~ 84 (84)
T cd06498 81 GPRK 84 (84)
T ss_pred EeCC
Confidence 9985
No 3
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.92 E-value=3.3e-24 Score=147.31 Aligned_cols=81 Identities=37% Similarity=0.629 Sum_probs=73.7
Q ss_pred cccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEE
Q psy4755 16 IRKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTI 95 (147)
Q Consensus 16 ~d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I 95 (147)
+..+++|.|.++|| ||+++||+|++.+|.|+|+|+++...++.+|++++|+|+|.||.+||.++|+|+|+.||+|+|
T Consensus 3 ~~~~d~y~v~~dlp---G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I 79 (83)
T cd06476 3 ESEDDKYQVFLDVC---HFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCI 79 (83)
T ss_pred eccCCeEEEEEEcC---CCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEE
Confidence 34688999999877 999999999999999999999876666667999999999999999999999999944999999
Q ss_pred EEeC
Q psy4755 96 TAPK 99 (147)
Q Consensus 96 ~~PK 99 (147)
++||
T Consensus 80 ~~Pr 83 (83)
T cd06476 80 QAPR 83 (83)
T ss_pred EecC
Confidence 9997
No 4
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.91 E-value=3.2e-24 Score=147.09 Aligned_cols=80 Identities=45% Similarity=0.780 Sum_probs=72.8
Q ss_pred ccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEE
Q psy4755 17 RKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 96 (147)
Q Consensus 17 d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 96 (147)
.++++|.|.++|| ||+++||+|++.++.|+|+|++....++.+|++++|+|+|.||.+||.++|+|+|+.||+|+|+
T Consensus 4 ~~~~~~~v~~dlp---G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~ 80 (83)
T cd06478 4 LDKDRFSVNLDVK---HFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTIS 80 (83)
T ss_pred ecCceEEEEEECC---CCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEE
Confidence 3678999999877 9999999999999999999988765556679999999999999999999999999459999999
Q ss_pred EeC
Q psy4755 97 APK 99 (147)
Q Consensus 97 ~PK 99 (147)
+||
T Consensus 81 ~PK 83 (83)
T cd06478 81 GPR 83 (83)
T ss_pred ecC
Confidence 997
No 5
>KOG3591|consensus
Probab=99.90 E-value=8.9e-23 Score=157.40 Aligned_cols=103 Identities=49% Similarity=0.730 Sum_probs=93.1
Q ss_pred ccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEE
Q psy4755 17 RKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 96 (147)
Q Consensus 17 d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 96 (147)
...+.|.|.+ ||..|+|++|+|++.|+.|.|+|+|+++++++||++|+|.|+|.||++||+++|++.|+.||+|+|+
T Consensus 69 ~~~~~F~V~l---DV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ 145 (173)
T KOG3591|consen 69 NDKDKFEVNL---DVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIE 145 (173)
T ss_pred cCCCcEEEEE---EcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEE
Confidence 3677887766 4679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCCCCCCeEEeeeeCCCCCCCC
Q psy4755 97 APKRTLQDKTTERPVPIVQTGVPALKP 123 (147)
Q Consensus 97 ~PK~~~~~~~~~r~I~I~~~~~~a~~~ 123 (147)
+||..... ...|.|+|+..+..+.+.
T Consensus 146 ap~~~~~~-~~er~ipI~~~~~~~~~~ 171 (173)
T KOG3591|consen 146 APKPPPKQ-DNERSIPIEQVGPSALSQ 171 (173)
T ss_pred ccCCCCcC-ccceEEeEeecCcccccc
Confidence 99998753 258999999999887653
No 6
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.90 E-value=6.9e-23 Score=152.71 Aligned_cols=90 Identities=20% Similarity=0.484 Sum_probs=76.2
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEE-----EEEEEEEECCCCcccCCcEEEcCCCCE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFIS-----RQFKRRYLLPKDVEIEKVTSSLSSDGV 92 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~-----r~F~R~~~LP~~Vd~~~i~A~~~~dGv 92 (147)
++++|+|.++|| ||+++||+|++++|.|+|+|++....++.+|++ ++|+|+|.||.+||.++ |+| +|||
T Consensus 43 ~~~~~~v~aelP---Gv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~-~dGV 116 (137)
T PRK10743 43 DENHYRIAIAVA---GFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANL-VNGL 116 (137)
T ss_pred CCCEEEEEEECC---CCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEE-eCCE
Confidence 689999999987 999999999999999999998765544455654 37999999999999995 999 5999
Q ss_pred EEEEEeCcCCCCCCCCeEEeee
Q psy4755 93 LTITAPKRTLQDKTTERPVPIV 114 (147)
Q Consensus 93 L~I~~PK~~~~~~~~~r~I~I~ 114 (147)
|+|++||..++ ..++|+|+|+
T Consensus 117 L~I~lPK~~~~-~~~~r~I~I~ 137 (137)
T PRK10743 117 LYIDLERVIPE-AKKPRRIEIN 137 (137)
T ss_pred EEEEEeCCCcc-ccCCeEEeeC
Confidence 99999997433 2568999984
No 7
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.90 E-value=5.9e-23 Score=141.23 Aligned_cols=79 Identities=32% Similarity=0.627 Sum_probs=71.8
Q ss_pred ccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEE
Q psy4755 17 RKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 96 (147)
Q Consensus 17 d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 96 (147)
++++.|+|.++|| ||+++||+|+++++.|+|+|++....++.+|++|+|+|+|.||.+||.++|+|+|.+||||+|+
T Consensus 4 e~~~~~~v~~dlp---G~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 4 EGKPMFQILLDVV---QFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred cCCceEEEEEEcC---CCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence 4788999999877 9999999999999999999998765556778889999999999999999999997459999999
Q ss_pred Ee
Q psy4755 97 AP 98 (147)
Q Consensus 97 ~P 98 (147)
++
T Consensus 81 ~~ 82 (83)
T cd06477 81 TK 82 (83)
T ss_pred ec
Confidence 86
No 8
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.89 E-value=1e-22 Score=140.63 Aligned_cols=80 Identities=45% Similarity=0.730 Sum_probs=73.0
Q ss_pred cccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEE
Q psy4755 16 IRKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTI 95 (147)
Q Consensus 16 ~d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I 95 (147)
.+++++|.|.++|| ||+++||+|+++++.|+|+|+++...++.+|.+++|+|+|.||.+||.++|+|.|..||+|+|
T Consensus 6 ~e~~~~~~v~~dlP---G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 6 RQTADRWKVSLDVN---HFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred EEcCCeEEEEEECC---CCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence 46899999999877 999999999999999999999876555667888999999999999999999999944999999
Q ss_pred EEe
Q psy4755 96 TAP 98 (147)
Q Consensus 96 ~~P 98 (147)
++|
T Consensus 83 ~lP 85 (86)
T cd06475 83 EAP 85 (86)
T ss_pred Eec
Confidence 998
No 9
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.89 E-value=2e-22 Score=151.11 Aligned_cols=99 Identities=15% Similarity=0.341 Sum_probs=80.1
Q ss_pred CCCCccc----cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEE-----EEEEEEECCCCcccC
Q psy4755 11 RNPPKIR----KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISR-----QFKRRYLLPKDVEIE 81 (147)
Q Consensus 11 ~~~p~~d----~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r-----~F~R~~~LP~~Vd~~ 81 (147)
...|.+| ++++|+|.++|| ||+++||+|.+++|.|+|+|++.....+.+|+++ +|+|+|.||.+||.+
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlP---Gv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~ 106 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALA---GFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS 106 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeC---CCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC
Confidence 3456444 357899999987 9999999999999999999987644444556543 699999999999998
Q ss_pred CcEEEcCCCCEEEEEEeCcCCCCCCCCeEEeeeeC
Q psy4755 82 KVTSSLSSDGVLTITAPKRTLQDKTTERPVPIVQT 116 (147)
Q Consensus 82 ~i~A~~~~dGvL~I~~PK~~~~~~~~~r~I~I~~~ 116 (147)
+|+| +||||+|++||..++ ..++|+|+|+..
T Consensus 107 --~A~~-~nGVL~I~lPK~~~~-~~~~rkI~I~~~ 137 (142)
T PRK11597 107 --GATF-VNGLLHIDLIRNEPE-AIAPQRIAISER 137 (142)
T ss_pred --cCEE-cCCEEEEEEeccCcc-ccCCcEEEECCc
Confidence 6999 599999999997433 257899999853
No 10
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.88 E-value=3.4e-22 Score=139.64 Aligned_cols=82 Identities=34% Similarity=0.583 Sum_probs=74.5
Q ss_pred ccccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEE
Q psy4755 15 KIRKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLT 94 (147)
Q Consensus 15 ~~d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~ 94 (147)
..|..+.|.|.+++ .||++|||+|++.++.|+|+|+|+.+.++++|++|+|+|+|.||.+||.+.|+|.|++||+|+
T Consensus 10 ~~~~~~~f~v~ldv---~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~ 86 (91)
T cd06480 10 PPNSSEPWKVCVNV---HSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLI 86 (91)
T ss_pred CCCCCCcEEEEEEe---CCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEE
Confidence 46778889888865 599999999999999999999998776667899999999999999999999999998899999
Q ss_pred EEEeC
Q psy4755 95 ITAPK 99 (147)
Q Consensus 95 I~~PK 99 (147)
|++|.
T Consensus 87 IeaP~ 91 (91)
T cd06480 87 IEAPQ 91 (91)
T ss_pred EEcCC
Confidence 99983
No 11
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.4e-22 Score=147.25 Aligned_cols=94 Identities=24% Similarity=0.513 Sum_probs=79.1
Q ss_pred cccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEcee--eCCcceEE-----EEEEEEEECCCCcccCCcEEEcC
Q psy4755 16 IRKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEK--EDEHGFIS-----RQFKRRYLLPKDVEIEKVTSSLS 88 (147)
Q Consensus 16 ~d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~--~~~~~~~~-----r~F~R~~~LP~~Vd~~~i~A~~~ 88 (147)
.++++.|+|.++|| ||+++||+|+++++.|+|+|++... .++.+|++ ++|+|+|.||..||.+.++|+|
T Consensus 46 ~e~~~~~~I~~elP---G~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~- 121 (146)
T COG0071 46 EETDDEYRITAELP---GVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKY- 121 (146)
T ss_pred EEcCCEEEEEEEcC---CCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEe-
Confidence 34888999999877 9999999999999999999988752 23445543 4799999999999999999999
Q ss_pred CCCEEEEEEeCcCCCCCCCCeEEeee
Q psy4755 89 SDGVLTITAPKRTLQDKTTERPVPIV 114 (147)
Q Consensus 89 ~dGvL~I~~PK~~~~~~~~~r~I~I~ 114 (147)
.||+|+|++||..+.. .+.++|.|+
T Consensus 122 ~nGvL~I~lpk~~~~~-~~~~~i~I~ 146 (146)
T COG0071 122 KNGLLTVTLPKAEPEE-KKPKRIEIE 146 (146)
T ss_pred eCcEEEEEEecccccc-ccCceeecC
Confidence 5999999999998752 467788774
No 12
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.87 E-value=2.8e-21 Score=135.34 Aligned_cols=94 Identities=30% Similarity=0.572 Sum_probs=74.8
Q ss_pred ccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEE-----EEEEEEEECCCCcccCCcEEEcCCCC
Q psy4755 17 RKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFIS-----RQFKRRYLLPKDVEIEKVTSSLSSDG 91 (147)
Q Consensus 17 d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~-----r~F~R~~~LP~~Vd~~~i~A~~~~dG 91 (147)
+.+++|.|.++|| ||.++||+|+++++.|+|+|.+.....+..+.. +.|.|+|.||.++|.++|+|.| +||
T Consensus 4 e~~~~~~i~~~lp---G~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~-~~G 79 (102)
T PF00011_consen 4 EDEDEYIIKVDLP---GFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASY-ENG 79 (102)
T ss_dssp ESSSEEEEEEE-T---TS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEE-TTS
T ss_pred ECCCEEEEEEECC---CCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEe-cCC
Confidence 5789999999877 999999999999999999998873333334433 5899999999999999999999 699
Q ss_pred EEEEEEeCcCCCCCCCCeEEeee
Q psy4755 92 VLTITAPKRTLQDKTTERPVPIV 114 (147)
Q Consensus 92 vL~I~~PK~~~~~~~~~r~I~I~ 114 (147)
+|+|++||....+....++|+|+
T Consensus 80 vL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 80 VLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEEEEEEccccccCCCCeEEEeC
Confidence 99999999988643468999984
No 13
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.87 E-value=1.1e-21 Score=135.79 Aligned_cols=80 Identities=31% Similarity=0.505 Sum_probs=68.8
Q ss_pred ccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeC--Ccce--EEEEEEEEEECCCCcccCCcEEEcCCCCE
Q psy4755 17 RKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKED--EHGF--ISRQFKRRYLLPKDVEIEKVTSSLSSDGV 92 (147)
Q Consensus 17 d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~--~~~~--~~r~F~R~~~LP~~Vd~~~i~A~~~~dGv 92 (147)
|.++.|.|.++|| ||+++||+|++++|.|+|+|++..... ..+| .+++|+|+|.||.+||.++|+|.|++||+
T Consensus 4 ~~~d~~~v~~dlp---G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGv 80 (87)
T cd06481 4 DGKEGFSLKLDVR---GFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGH 80 (87)
T ss_pred CccceEEEEEECC---CCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCce
Confidence 4688999999877 999999999999999999998765432 2333 35789999999999999999999955999
Q ss_pred EEEEEeC
Q psy4755 93 LTITAPK 99 (147)
Q Consensus 93 L~I~~PK 99 (147)
|+|++|+
T Consensus 81 L~I~~P~ 87 (87)
T cd06481 81 LHIRAPR 87 (87)
T ss_pred EEEEcCC
Confidence 9999996
No 14
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.87 E-value=1.6e-21 Score=133.11 Aligned_cols=77 Identities=51% Similarity=0.838 Sum_probs=69.6
Q ss_pred CCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCC-CEEEEEE
Q psy4755 19 PRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSD-GVLTITA 97 (147)
Q Consensus 19 e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~d-GvL~I~~ 97 (147)
.++|.|.++|| ||+++||+|+++++.|+|+|+++...+..++.+++|+|+|.||.+||.++++|+|+ | |+|+|++
T Consensus 6 ~~~~~v~~dlp---G~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~-~~GvL~I~~ 81 (83)
T cd06526 6 DEKFQVTLDVK---GFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLS-SDGVLTIEA 81 (83)
T ss_pred CeeEEEEEECC---CCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeC-CCcEEEEEe
Confidence 36899999877 99999999999999999999887655445688899999999999999999999996 6 9999999
Q ss_pred eC
Q psy4755 98 PK 99 (147)
Q Consensus 98 PK 99 (147)
||
T Consensus 82 Pk 83 (83)
T cd06526 82 PK 83 (83)
T ss_pred cC
Confidence 97
No 15
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.86 E-value=2.2e-21 Score=132.83 Aligned_cols=78 Identities=26% Similarity=0.380 Sum_probs=68.3
Q ss_pred cccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEE
Q psy4755 16 IRKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTI 95 (147)
Q Consensus 16 ~d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I 95 (147)
.+.++.|.|.++|| ||+|+||+|++++|.|+|+|+++... +..+++|+|+|.||.+||.++|+|+|.+||+|+|
T Consensus 4 ~e~~~~~~v~~dlp---G~~pedi~V~v~~~~L~I~ger~~~~---~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I 77 (81)
T cd06479 4 KTLGDTYQFAVDVS---DFSPEDIIVTTSNNQIEVHAEKLASD---GTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTI 77 (81)
T ss_pred cCcCCeEEEEEECC---CCCHHHeEEEEECCEEEEEEEEeccC---CCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEE
Confidence 35788999999877 99999999999999999999875332 3456899999999999999999999745999999
Q ss_pred EEeC
Q psy4755 96 TAPK 99 (147)
Q Consensus 96 ~~PK 99 (147)
++++
T Consensus 78 ~~~~ 81 (81)
T cd06479 78 KARR 81 (81)
T ss_pred EecC
Confidence 9986
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.84 E-value=3e-20 Score=128.84 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=67.8
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCC---cceEEEEEEEEEECCCCcccCCcEEEcCCCCEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDE---HGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLT 94 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~---~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~ 94 (147)
..+.|+|.++|| ||+++||+|++.+|.|+|+|+++..... ..+.+++|.|+|.||.+||.++|+|+|..+|+|+
T Consensus 6 ~~~~~~v~adlP---G~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~ 82 (87)
T cd06482 6 DSSNVLASVDVC---GFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVK 82 (87)
T ss_pred cCCEEEEEEECC---CCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEE
Confidence 567899999877 9999999999999999999987654321 1366779999999999999999999998666999
Q ss_pred EEEeC
Q psy4755 95 ITAPK 99 (147)
Q Consensus 95 I~~PK 99 (147)
|..|.
T Consensus 83 i~~~~ 87 (87)
T cd06482 83 IETPC 87 (87)
T ss_pred EeeCC
Confidence 99883
No 17
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.83 E-value=3.7e-20 Score=128.44 Aligned_cols=80 Identities=29% Similarity=0.598 Sum_probs=67.9
Q ss_pred cccCCeEEEEEEcCCCCCCCCCCeEEEEECC-EEEEEEEEceee--CCcceE-----EEEEEEEEECCCCcccCCcEEEc
Q psy4755 16 IRKPRALTLPFCIPSFLGAPSHEISIKTVDG-FILVEGKHEEKE--DEHGFI-----SRQFKRRYLLPKDVEIEKVTSSL 87 (147)
Q Consensus 16 ~d~e~~~~l~~~lpDvpG~~~edI~V~v~~~-~L~I~g~~~~~~--~~~~~~-----~r~F~R~~~LP~~Vd~~~i~A~~ 87 (147)
.++++.|+|.++|| ||+++||+|+++++ .|+|+|++.... +...|+ +++|+|+|.||.+||.++|+|+|
T Consensus 5 ~E~~~~~~i~~~lP---Gv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~ 81 (92)
T cd06472 5 KETPEAHVFKADVP---GVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFL 81 (92)
T ss_pred EEcCCeEEEEEECC---CCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEE
Confidence 46899999999987 99999999999964 899999875432 233344 24799999999999999999999
Q ss_pred CCCCEEEEEEeC
Q psy4755 88 SSDGVLTITAPK 99 (147)
Q Consensus 88 ~~dGvL~I~~PK 99 (147)
.||+|+|++||
T Consensus 82 -~nGvL~I~lPK 92 (92)
T cd06472 82 -ENGVLTVTVPK 92 (92)
T ss_pred -ECCEEEEEecC
Confidence 59999999997
No 18
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.80 E-value=3.8e-19 Score=123.28 Aligned_cols=79 Identities=28% Similarity=0.572 Sum_probs=67.4
Q ss_pred cccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceee---C-CcceEE-----EEEEEEEECCCCcccCCcEEE
Q psy4755 16 IRKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKE---D-EHGFIS-----RQFKRRYLLPKDVEIEKVTSS 86 (147)
Q Consensus 16 ~d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~---~-~~~~~~-----r~F~R~~~LP~~Vd~~~i~A~ 86 (147)
.++++.|+|.++|| ||+++||+|.++++.|+|+|++.... + ...|++ ++|+|+|.|| ++|.+.|+|+
T Consensus 6 ~e~~~~~~i~~~lP---Gv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~ 81 (93)
T cd06471 6 KETDDEYIVEADLP---GFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAK 81 (93)
T ss_pred EEcCCEEEEEEECC---CCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEE
Confidence 45899999999987 99999999999999999999876432 1 223543 3699999999 7999999999
Q ss_pred cCCCCEEEEEEeC
Q psy4755 87 LSSDGVLTITAPK 99 (147)
Q Consensus 87 ~~~dGvL~I~~PK 99 (147)
| .||+|+|++||
T Consensus 82 ~-~dGvL~I~lPK 93 (93)
T cd06471 82 Y-ENGVLKITLPK 93 (93)
T ss_pred E-ECCEEEEEEcC
Confidence 9 59999999997
No 19
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.78 E-value=2.2e-18 Score=119.46 Aligned_cols=75 Identities=23% Similarity=0.529 Sum_probs=64.5
Q ss_pred CCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceee-CCcceEE-----EEEEEEEECCCCcccCCcEEEcCCCCE
Q psy4755 19 PRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKE-DEHGFIS-----RQFKRRYLLPKDVEIEKVTSSLSSDGV 92 (147)
Q Consensus 19 e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~-~~~~~~~-----r~F~R~~~LP~~Vd~~~i~A~~~~dGv 92 (147)
+++|+|.++|| ||+++||+|.++++.|+|+|++.... ++.+|++ ++|+|+|.||.+||.+ +|+| +||+
T Consensus 10 ~~~~~v~~~lP---G~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~-~~Gv 83 (90)
T cd06470 10 ENNYRITLAVA---GFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAEL-ENGL 83 (90)
T ss_pred CCeEEEEEECC---CCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEE-eCCE
Confidence 58999999887 99999999999999999999876654 3344553 4799999999999975 8999 5999
Q ss_pred EEEEEeC
Q psy4755 93 LTITAPK 99 (147)
Q Consensus 93 L~I~~PK 99 (147)
|+|++++
T Consensus 84 L~I~l~~ 90 (90)
T cd06470 84 LTIDLER 90 (90)
T ss_pred EEEEEEC
Confidence 9999985
No 20
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.76 E-value=6.1e-18 Score=114.01 Aligned_cols=80 Identities=35% Similarity=0.594 Sum_probs=68.5
Q ss_pred cccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCc------ceEEEEEEEEEECCCCcccCCcEEEcCC
Q psy4755 16 IRKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEH------GFISRQFKRRYLLPKDVEIEKVTSSLSS 89 (147)
Q Consensus 16 ~d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~------~~~~r~F~R~~~LP~~Vd~~~i~A~~~~ 89 (147)
.+.++.|.|.++|| ||+++||+|++.++.|.|+|++....... .+..+.|.|+|.||.++|.+.++|.|.
T Consensus 3 ~e~~~~~~i~~~lp---g~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~- 78 (88)
T cd06464 3 YETDDAYVVEADLP---GFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLE- 78 (88)
T ss_pred EEcCCEEEEEEECC---CCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe-
Confidence 35678999999877 99999999999999999999877543221 233468999999999999999999995
Q ss_pred CCEEEEEEeC
Q psy4755 90 DGVLTITAPK 99 (147)
Q Consensus 90 dGvL~I~~PK 99 (147)
||+|+|++||
T Consensus 79 ~G~L~I~~pk 88 (88)
T cd06464 79 NGVLTITLPK 88 (88)
T ss_pred CCEEEEEEcC
Confidence 9999999997
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.50 E-value=2.2e-13 Score=88.22 Aligned_cols=78 Identities=33% Similarity=0.589 Sum_probs=67.7
Q ss_pred ccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEE
Q psy4755 17 RKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 96 (147)
Q Consensus 17 d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 96 (147)
++++.|.|++++| |+.+++|+|.+.++.|.|+|.+..... .....+.|.+.|.||..+|++.++|.|. +|+|+|.
T Consensus 3 q~~~~v~i~i~~~---~~~~~~i~v~~~~~~l~v~~~~~~~~~-~~~~~~~~~~~~~L~~~i~~~~~~~~~~-~~~l~i~ 77 (80)
T cd00298 3 QTDDEVVVTVDLP---GVKKEDIKVEVEDNVLTISGKREEEEE-RERSYGEFERSFELPEDVDPEKSKASLE-NGVLEIT 77 (80)
T ss_pred EcCCEEEEEEECC---CCCHHHeEEEEECCEEEEEEEEcCCCc-ceEeeeeEEEEEECCCCcCHHHCEEEEE-CCEEEEE
Confidence 4568999999877 999999999999999999998765432 3345578999999999999999999995 9999999
Q ss_pred EeC
Q psy4755 97 APK 99 (147)
Q Consensus 97 ~PK 99 (147)
+||
T Consensus 78 l~K 80 (80)
T cd00298 78 LPK 80 (80)
T ss_pred EcC
Confidence 997
No 22
>KOG0710|consensus
Probab=99.50 E-value=5.1e-14 Score=110.54 Aligned_cols=96 Identities=26% Similarity=0.538 Sum_probs=76.1
Q ss_pred ccccCCeEEEEEEcCCCCCCCCCCeEEEEECC-EEEEEEEEceeeCC----cceE-----EEEEEEEEECCCCcccCCcE
Q psy4755 15 KIRKPRALTLPFCIPSFLGAPSHEISIKTVDG-FILVEGKHEEKEDE----HGFI-----SRQFKRRYLLPKDVEIEKVT 84 (147)
Q Consensus 15 ~~d~e~~~~l~~~lpDvpG~~~edI~V~v~~~-~L~I~g~~~~~~~~----~~~~-----~r~F~R~~~LP~~Vd~~~i~ 84 (147)
+.+..+.|++.++|| |+..++|+|.++++ .|+|+|++....++ ..|. .+.|.|+|.||++++.+.|+
T Consensus 89 v~e~~~~~~~~~~~P---gl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ik 165 (196)
T KOG0710|consen 89 VKESPDAHEFKVDLP---GLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEIK 165 (196)
T ss_pred cccCCCceEEEeeCC---CCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHHH
Confidence 356899999999877 99999999999987 79999987654322 1232 23699999999999999999
Q ss_pred EEcCCCCEEEEEEeCcCCC-CCCCCeEEeee
Q psy4755 85 SSLSSDGVLTITAPKRTLQ-DKTTERPVPIV 114 (147)
Q Consensus 85 A~~~~dGvL~I~~PK~~~~-~~~~~r~I~I~ 114 (147)
|.| +||||+|++||.... +....+.|.|.
T Consensus 166 A~~-~nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 166 AEM-ENGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred HHh-hCCeEEEEEecccccccCCccceeecc
Confidence 999 599999999999873 12445555553
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.18 E-value=2e-10 Score=76.46 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=61.1
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 97 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 97 (147)
+++.+.|++++| |+++++++|.++++.|.|+| ..|.+.+.||..||+++.+|++. +|.|.|++
T Consensus 4 t~~~v~i~i~~p---~v~~~~v~v~~~~~~l~i~~-------------~~~~~~~~l~~~I~~e~~~~~~~-~~~l~i~L 66 (78)
T cd06469 4 TDEDVKISVPLK---GVKTSKVDIFCSDLYLKVNF-------------PPYLFELDLAAPIDDEKSSAKIG-NGVLVFTL 66 (78)
T ss_pred cCCEEEEEEEeC---CCccccceEEEecCEEEEcC-------------CCEEEEEeCcccccccccEEEEe-CCEEEEEE
Confidence 567899999887 99999999999999999988 13788899999999999999995 99999999
Q ss_pred eCcCC
Q psy4755 98 PKRTL 102 (147)
Q Consensus 98 PK~~~ 102 (147)
+|...
T Consensus 67 ~K~~~ 71 (78)
T cd06469 67 VKKEP 71 (78)
T ss_pred EeCCC
Confidence 99764
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.80 E-value=4.7e-08 Score=64.50 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=62.5
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 97 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 97 (147)
+++.+.|.+.+| |..++++.|.+.++.|.|++.... + ..|...+.|+..||++..++++. +|.|.|.+
T Consensus 4 ~~~~v~i~v~~~---~~~~~~~~v~~~~~~l~i~~~~~~---~-----~~~~~~~~L~~~I~~~~s~~~~~-~~~l~i~L 71 (84)
T cd06463 4 TLDEVTITIPLK---DVTKKDVKVEFTPKSLTVSVKGGG---G-----KEYLLEGELFGPIDPEESKWTVE-DRKIEITL 71 (84)
T ss_pred cccEEEEEEEcC---CCCccceEEEEecCEEEEEeeCCC---C-----CceEEeeEccCccchhhcEEEEe-CCEEEEEE
Confidence 567888999877 888999999999999999996431 1 34677789999999999999995 99999999
Q ss_pred eCcCC
Q psy4755 98 PKRTL 102 (147)
Q Consensus 98 PK~~~ 102 (147)
+|..+
T Consensus 72 ~K~~~ 76 (84)
T cd06463 72 KKKEP 76 (84)
T ss_pred EECCC
Confidence 99864
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.47 E-value=9.9e-07 Score=68.36 Aligned_cols=70 Identities=17% Similarity=0.266 Sum_probs=52.4
Q ss_pred CC-eEEEEEEcCCCCCCCCCC-eEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEE
Q psy4755 19 PR-ALTLPFCIPSFLGAPSHE-ISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 96 (147)
Q Consensus 19 e~-~~~l~~~lpDvpG~~~ed-I~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 96 (147)
++ .++|.++|| |+..++ |+|.++.+.+.|..+.. +. |.+++.||.. +.+.++++|. ||||+|+
T Consensus 100 dDge~~VvAdLP---GVs~dd~idV~l~~d~~~L~i~~~-----~~-----~~krv~L~~~-~~e~~~~t~n-NgILEIr 164 (177)
T PF05455_consen 100 DDGELVVVADLP---GVSDDDAIDVTLDDDEGALTIRVG-----EK-----YLKRVALPWP-DPEITSATFN-NGILEIR 164 (177)
T ss_pred CCCcEEEEEeCC---CCCcccceeeEeecCCceEEEecC-----Cc-----eEeeEecCCC-ccceeeEEEe-CceEEEE
Confidence 44 587888776 999898 99999955444443221 11 4567999966 6889999995 9999999
Q ss_pred EeCcCCC
Q psy4755 97 APKRTLQ 103 (147)
Q Consensus 97 ~PK~~~~ 103 (147)
+-+....
T Consensus 165 i~~~~~~ 171 (177)
T PF05455_consen 165 IRRTEES 171 (177)
T ss_pred EeecCCC
Confidence 9988763
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.34 E-value=3.1e-06 Score=56.62 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=61.9
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 97 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 97 (147)
+++.+.|.+.+| |+.++++.|.+.++.|.|++... ++ ..|...+.|...|+++..++.+. +|.|.|.+
T Consensus 5 t~~~v~i~v~~~---~~~~~~v~v~~~~~~l~i~~~~~---~~-----~~~~~~~~L~~~I~~~~s~~~~~-~~~vei~L 72 (84)
T cd06466 5 TDTSVTVTIYAK---NVDKEDVKVEFNEQSLSVSIILP---GG-----SEYQLELDLFGPIDPEQSKVSVL-PTKVEITL 72 (84)
T ss_pred cCCEEEEEEEEC---CCCHHHCEEEEecCEEEEEEECC---CC-----CeEEEecccccccCchhcEEEEe-CeEEEEEE
Confidence 567888999876 99999999999999999988642 11 24667789999999999999995 99999999
Q ss_pred eCcCC
Q psy4755 98 PKRTL 102 (147)
Q Consensus 98 PK~~~ 102 (147)
.|...
T Consensus 73 ~K~~~ 77 (84)
T cd06466 73 KKAEP 77 (84)
T ss_pred EcCCC
Confidence 99864
No 27
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.81 E-value=0.00014 Score=60.08 Aligned_cols=67 Identities=18% Similarity=0.398 Sum_probs=57.7
Q ss_pred cCCeEEEEEEcCCCCCC-CCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcC-CCCEEEE
Q psy4755 18 KPRALTLPFCIPSFLGA-PSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLS-SDGVLTI 95 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~-~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~-~dGvL~I 95 (147)
....++|+|+|| |+ +..+|.|.|.++.|.|..... .|.-.+.||..||.+..+|.|+ ..++|+|
T Consensus 259 ~p~~lvv~i~LP---~~~s~~~i~LdV~~~~l~l~~~~~-----------~y~L~l~LP~~V~~~~~~Akf~~~~~~L~v 324 (328)
T PF08190_consen 259 SPEELVVEIELP---GVESASDIDLDVSEDRLSLSSPKP-----------KYRLDLPLPYPVDEDNGKAKFDKKTKTLTV 324 (328)
T ss_pred CCceEEEEEECC---CcCccceeEEEEeCCEEEEEeCCC-----------ceEEEccCCCcccCCCceEEEccCCCEEEE
Confidence 578899999987 98 799999999999999998432 2445599999999999999996 4599999
Q ss_pred EEe
Q psy4755 96 TAP 98 (147)
Q Consensus 96 ~~P 98 (147)
++|
T Consensus 325 tlp 327 (328)
T PF08190_consen 325 TLP 327 (328)
T ss_pred EEE
Confidence 998
No 28
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=97.79 E-value=0.00051 Score=44.60 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=55.9
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 97 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 97 (147)
+++.+.|.+.+.+.. +.++||+|.+.++.|.|+..... + ..|.-.+.|...|+++..+..+. ++.|.|+|
T Consensus 8 t~~~V~v~i~~~~~~-~~~~dv~v~~~~~~l~v~~~~~~-----~---~~~~~~~~L~~~I~~~~s~~~~~-~~~i~i~L 77 (79)
T PF04969_consen 8 TDDEVTVTIPVKPVD-ISKEDVKVDFTDTSLSVSIKSGD-----G---KEYLLEGELFGEIDPDESTWKVK-DNKIEITL 77 (79)
T ss_dssp ESSEEEEEEE-TTTT-SSGGGEEEEEETTEEEEEEEETT-----S---CEEEEEEEBSS-BECCCEEEEEE-TTEEEEEE
T ss_pred CCCEEEEEEEEcCCC-CChHHeEEEEEeeEEEEEEEccC-----C---ceEEEEEEEeeeEcchhcEEEEE-CCEEEEEE
Confidence 678888999874122 56999999999999999975322 1 33566678999999999999995 99999999
Q ss_pred eC
Q psy4755 98 PK 99 (147)
Q Consensus 98 PK 99 (147)
.|
T Consensus 78 ~K 79 (79)
T PF04969_consen 78 KK 79 (79)
T ss_dssp EB
T ss_pred EC
Confidence 86
No 29
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.34 E-value=0.0034 Score=44.30 Aligned_cols=71 Identities=13% Similarity=0.202 Sum_probs=58.2
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 97 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 97 (147)
+.+.+.|++.++ |. +++.|.+..+.|.|++.... ++ +.|.-.+.|...|+++..+..+. ++.|.|+|
T Consensus 8 t~~~V~i~i~~~---~~--~~~~V~~~~~~l~v~~~~~~--~~-----~~y~~~~~L~~~I~pe~s~~~v~-~~kveI~L 74 (108)
T cd06465 8 RSDVVYLTIELP---DA--KDPKIKLEPTSLSFKAKGGG--GG-----KKYEFDLEFYKEIDPEESKYKVT-GRQIEFVL 74 (108)
T ss_pred CCCEEEEEEEeC---CC--CCcEEEEECCEEEEEEEcCC--CC-----eeEEEEeEhhhhccccccEEEec-CCeEEEEE
Confidence 677888999877 66 99999999999999985321 11 33556679999999999999995 89999999
Q ss_pred eCcC
Q psy4755 98 PKRT 101 (147)
Q Consensus 98 PK~~ 101 (147)
.|..
T Consensus 75 ~K~~ 78 (108)
T cd06465 75 RKKE 78 (108)
T ss_pred EECC
Confidence 9987
No 30
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.13 E-value=0.0035 Score=41.82 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=55.9
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCC-CEEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSD-GVLTIT 96 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~d-GvL~I~ 96 (147)
+++.+.|.+.+| .|+.++||+|.+.++.|.|+... + .++ +. -.|...||++...-.+. + ..|.|+
T Consensus 6 t~~~V~i~i~~~--~~~~~~dv~v~~~~~~l~v~~~~-----~-~~~---l~--~~L~~~I~~~~s~w~~~-~~~~v~i~ 71 (85)
T cd06467 6 TLDEVTVTIPLP--EGTKSKDVKVEITPKHLKVGVKG-----G-EPL---LD--GELYAKVKVDESTWTLE-DGKLLEIT 71 (85)
T ss_pred eCCEEEEEEECC--CCCcceeEEEEEEcCEEEEEECC-----C-Cce---Ec--CcccCceeEcCCEEEEe-CCCEEEEE
Confidence 467788888876 37899999999999999998742 1 111 22 35888999999888995 8 999999
Q ss_pred EeCcCC
Q psy4755 97 APKRTL 102 (147)
Q Consensus 97 ~PK~~~ 102 (147)
+.|..+
T Consensus 72 L~K~~~ 77 (85)
T cd06467 72 LEKRNE 77 (85)
T ss_pred EEECCC
Confidence 999864
No 31
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.12 E-value=0.0051 Score=41.31 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=58.0
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 97 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 97 (147)
+.+.+.|++.+. |+.++++.|.+.++.|.+++... ++ ..|.-.+.|-..|+++..+..+. .+-+.|.|
T Consensus 5 ~~~~V~iti~~k---~~~~~~~~v~~~~~~l~~~~~~~---~~-----~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L 72 (84)
T cd06489 5 TESQVVITILIK---NVKPEDVSVEFEKRELSATVKLP---SG-----NDYSLKLHLLHPIVPEQSSYKIL-STKIEIKL 72 (84)
T ss_pred cCCEEEEEEEEC---CCCHHHCEEEEeCCEEEEEEECC---CC-----CcEEEeeecCceecchhcEEEEe-CcEEEEEE
Confidence 456677888765 99999999999999999998642 11 12445578999999999899985 88899999
Q ss_pred eCcCC
Q psy4755 98 PKRTL 102 (147)
Q Consensus 98 PK~~~ 102 (147)
.|...
T Consensus 73 ~K~~~ 77 (84)
T cd06489 73 KKTEA 77 (84)
T ss_pred EcCCC
Confidence 99753
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=96.94 E-value=0.015 Score=39.44 Aligned_cols=77 Identities=12% Similarity=0.181 Sum_probs=57.5
Q ss_pred ccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEE-ECCCCcccCCcEEEcCCCCEEEE
Q psy4755 17 RKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRY-LLPKDVEIEKVTSSLSSDGVLTI 95 (147)
Q Consensus 17 d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~-~LP~~Vd~~~i~A~~~~dGvL~I 95 (147)
++++.+.|.+.++++..+..++++|.+..+.|.|.+... ++. .|.-.+ .|-..|+++..+..+. .+-+.|
T Consensus 8 Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~---~~~-----~~~~~~~~L~~~I~~e~s~~~~~-~~ki~i 78 (92)
T cd06468 8 QSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDL---NGK-----NYRFTINRLLKKIDPEKSSFKVK-TDRIVI 78 (92)
T ss_pred cCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECC---CCc-----EEEEEehHhhCccCccccEEEEe-CCEEEE
Confidence 367888899988733333459999999999999998431 111 133334 4889999999999995 899999
Q ss_pred EEeCcCC
Q psy4755 96 TAPKRTL 102 (147)
Q Consensus 96 ~~PK~~~ 102 (147)
.|.|..+
T Consensus 79 ~L~K~~~ 85 (92)
T cd06468 79 TLAKKKE 85 (92)
T ss_pred EEEeCCC
Confidence 9999864
No 33
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=96.77 E-value=0.023 Score=38.40 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=54.1
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCC-EEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDG-VLTIT 96 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dG-vL~I~ 96 (147)
+.+.+.|.+.+| +|..++|++|.+..+.|.|.... +..++ .-.|...|+++.-.=.+ ++| .|.|.
T Consensus 6 t~~~V~v~i~~p--~~~~~~dv~v~~~~~~l~v~~~~-----~~~~~------~g~L~~~I~~d~Stw~i-~~~~~l~i~ 71 (85)
T cd06493 6 TEEDLTLTIRLP--EDTTKEDIRIKFLPDHISIALKD-----QAPLL------EGKLYSSIDHESSTWII-KENKSLEVS 71 (85)
T ss_pred eCCEEEEEEECC--CCCChhhEEEEEecCEEEEEeCC-----CCeEE------eCcccCcccccCcEEEE-eCCCEEEEE
Confidence 467788888875 59999999999999999997621 11121 23788899999977777 367 69999
Q ss_pred EeCcCC
Q psy4755 97 APKRTL 102 (147)
Q Consensus 97 ~PK~~~ 102 (147)
+.|..+
T Consensus 72 L~K~~~ 77 (85)
T cd06493 72 LIKKDE 77 (85)
T ss_pred EEECCC
Confidence 999864
No 34
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.36 E-value=0.043 Score=38.23 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=54.8
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCE-EEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGV-LTIT 96 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGv-L~I~ 96 (147)
+.+.+.|+|.|| +|.+..|++|.+..+.|.|.-+-. .++.+ .|...|+++.-.=++. +|- |.|.
T Consensus 13 T~~eV~v~i~lp--~~~~~kdv~V~i~~~~l~V~~~g~------~~l~G------~L~~~I~~destWtle-d~k~l~I~ 77 (93)
T cd06494 13 TMDEVFIEVNVP--PGTRAKDVKCKLGSRDISLAVKGQ------EVLKG------KLFDSVVADECTWTLE-DRKLIRIV 77 (93)
T ss_pred EcCEEEEEEECC--CCCceeeEEEEEEcCEEEEEECCE------EEEcC------cccCccCcccCEEEEE-CCcEEEEE
Confidence 678888999887 699999999999999999976211 12222 5778899999888884 665 8999
Q ss_pred EeCcCC
Q psy4755 97 APKRTL 102 (147)
Q Consensus 97 ~PK~~~ 102 (147)
|.|...
T Consensus 78 L~K~~~ 83 (93)
T cd06494 78 LTKSNR 83 (93)
T ss_pred EEeCCC
Confidence 999864
No 35
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=96.13 E-value=0.085 Score=35.82 Aligned_cols=73 Identities=10% Similarity=0.090 Sum_probs=58.9
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 97 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 97 (147)
+++.+.|.+.+. |..++++.|.++.+.|.|+..... + ..|.-.+.|-..|+++..+-... .+-+.|.+
T Consensus 8 s~~~V~ItI~~k---~~~~~~~~v~~~~~~l~v~~~~~~---~-----~~y~~~l~L~~~I~~~~s~~~v~-~~kvei~L 75 (87)
T cd06488 8 TGSHVVVSVYAK---NSNPELSVVEANSTVLTIHIVFEG---N-----KEFQLDIELWGVIDVEKSSVNML-PTKVEIKL 75 (87)
T ss_pred CCCEEEEEEEEC---cCCccceEEEecCCEEEEEEECCC---C-----ceEEEEeeccceEChhHcEEEec-CcEEEEEE
Confidence 567788888765 999999999999999998875431 1 23666678999999999888885 99999999
Q ss_pred eCcCC
Q psy4755 98 PKRTL 102 (147)
Q Consensus 98 PK~~~ 102 (147)
.|..+
T Consensus 76 ~K~~~ 80 (87)
T cd06488 76 RKAEP 80 (87)
T ss_pred EeCCC
Confidence 99864
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=95.10 E-value=0.48 Score=33.68 Aligned_cols=71 Identities=11% Similarity=0.151 Sum_probs=53.1
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 97 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 97 (147)
+.+.+.|+++++ + ..|++|.++.+.|.++|... ++. +|.-.+.|=..|+++.-+...+ .-.+.|.+
T Consensus 9 r~~~V~ltI~v~---d--~~d~~v~l~~~~l~f~~~~~---~g~-----~y~~~l~l~~~I~pe~Sk~~v~-~r~ve~~L 74 (106)
T cd00237 9 RRDYVFIEFCVE---D--SKDVKVDFEKSKLTFSCLNG---DNV-----KIYNEIELYDRVDPNDSKHKRT-DRSILCCL 74 (106)
T ss_pred CCCEEEEEEEeC---C--CCCcEEEEecCEEEEEEECC---CCc-----EEEEEEEeecccCcccCeEEeC-CceEEEEE
Confidence 567889999987 4 58999999999999999431 121 1333567777889988777774 77788888
Q ss_pred eCcCC
Q psy4755 98 PKRTL 102 (147)
Q Consensus 98 PK~~~ 102 (147)
.|...
T Consensus 75 ~K~~~ 79 (106)
T cd00237 75 RKGKE 79 (106)
T ss_pred EeCCC
Confidence 88764
No 37
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=94.56 E-value=0.41 Score=32.68 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=52.8
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCC-EEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDG-VLTIT 96 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dG-vL~I~ 96 (147)
+.+.+.|++.||.-.|+++.||+|.+..+.|.|.-+.. .-++.+ .|...|+.+.-.=.+ ++| .|.|.
T Consensus 6 T~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~-----~~~i~G------~L~~~V~~des~Wtl-ed~~~l~i~ 73 (87)
T cd06492 6 TLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQ-----PPIIDG------ELYNEVKVEESSWLI-EDGKVVTVN 73 (87)
T ss_pred ecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCC-----ceEEeC------cccCcccccccEEEE-eCCCEEEEE
Confidence 34667888888622258999999999999999855311 113333 466788888877778 576 89999
Q ss_pred EeCcCC
Q psy4755 97 APKRTL 102 (147)
Q Consensus 97 ~PK~~~ 102 (147)
+-|...
T Consensus 74 L~K~~~ 79 (87)
T cd06492 74 LEKINK 79 (87)
T ss_pred EEECCC
Confidence 999853
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=90.92 E-value=1.4 Score=37.18 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=58.0
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 97 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 97 (147)
..+.++|.|-+- |+.++++.|.+.++.|.|+-.... + ..|.-.+.|=..|+++..+..+. ---+.|+|
T Consensus 164 s~~~V~i~i~~k---~~~~~~~~v~~~~~~l~v~~~~~~---~-----~~y~~~~~L~~~I~p~~s~~~v~-~~Kiei~l 231 (356)
T PLN03088 164 KPEEVVVTVFAK---GVPAENVNVDFGEQILSVVIEVPG---E-----DAYHLQPRLFGKIIPDKCKYEVL-STKIEIRL 231 (356)
T ss_pred cCCEEEEEEEec---CCChHHcEEEeecCEEEEEEecCC---C-----cceeecccccccccccccEEEEe-cceEEEEE
Confidence 677888888765 999999999999999999875421 1 12444578989999999999986 67899999
Q ss_pred eCcCC
Q psy4755 98 PKRTL 102 (147)
Q Consensus 98 PK~~~ 102 (147)
.|...
T Consensus 232 ~K~~~ 236 (356)
T PLN03088 232 AKAEP 236 (356)
T ss_pred ecCCC
Confidence 98764
No 39
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=89.89 E-value=4.4 Score=28.59 Aligned_cols=73 Identities=14% Similarity=0.183 Sum_probs=52.5
Q ss_pred cCCeEEEEEEcCCCCC-CCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCE-EEE
Q psy4755 18 KPRALTLPFCIPSFLG-APSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGV-LTI 95 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG-~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGv-L~I 95 (147)
+.+.+.|+|.|| +| .+..||.|.+..+.|.|.-+... .+.-++.+ .|...|+.+.-.=.+ +||- |.|
T Consensus 12 Tl~eV~V~i~lp--~~~~~~kdv~v~i~~~~l~v~~~~~~--~~~~~i~G------~L~~~V~~des~Wtl-ed~~~l~I 80 (102)
T cd06495 12 DYTDVEVRVPVP--KDVVKGRQVSVDLQSSSIRVSVRDGG--GEKVLMEG------EFTHKINTENSLWSL-EPGKCVLL 80 (102)
T ss_pred ECCeEEEEEECC--CCCccceEEEEEEEcCEEEEEEecCC--CCceEEeC------cccCcccCccceEEE-eCCCEEEE
Confidence 567888899887 46 46899999999999998774210 00113333 567788888877778 5865 799
Q ss_pred EEeCcC
Q psy4755 96 TAPKRT 101 (147)
Q Consensus 96 ~~PK~~ 101 (147)
.|-|..
T Consensus 81 ~L~K~~ 86 (102)
T cd06495 81 SLSKCS 86 (102)
T ss_pred EEEECC
Confidence 999974
No 40
>KOG1309|consensus
Probab=84.39 E-value=6.7 Score=30.91 Aligned_cols=72 Identities=10% Similarity=0.171 Sum_probs=52.3
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 97 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 97 (147)
++..++|.+-.. |+.++|+.|.+..+.|.|..+-.. +. .|.-...|=..|.++..+-..- ---+.|+|
T Consensus 11 t~~~vvIti~~k---~v~~~~v~v~~s~~~l~~~~~~~~---g~-----~~~l~~~L~~~I~pe~~s~k~~-stKVEI~L 78 (196)
T KOG1309|consen 11 TETSVVITIFAK---NVPKEDVNVEISENTLSIVIQLPS---GS-----EYNLQLKLYHEIIPEKSSFKVF-STKVEITL 78 (196)
T ss_pred CCceEEEEEEec---CCCccceeEEeecceEEEEEecCC---ch-----hhhhhHHhcccccccceeeEee-eeeEEEEe
Confidence 788888888766 889999999999999998876431 11 1222234667788888766663 66788999
Q ss_pred eCcC
Q psy4755 98 PKRT 101 (147)
Q Consensus 98 PK~~ 101 (147)
+|..
T Consensus 79 ~K~~ 82 (196)
T KOG1309|consen 79 AKAE 82 (196)
T ss_pred cccc
Confidence 9854
No 41
>KOG2265|consensus
Probab=71.98 E-value=22 Score=27.84 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=50.7
Q ss_pred CCeEEEEEEcCCCCCC-CCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy4755 19 PRALTLPFCIPSFLGA-PSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 97 (147)
Q Consensus 19 e~~~~l~~~lpDvpG~-~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 97 (147)
=..+.|.+-+| +|+ +..+|++.+....|.|.-+... -++.+ .|...|+.+...=.+ ++|.+.|.+
T Consensus 27 L~EV~i~i~vp--~~~~ksk~v~~~Iq~~hI~V~~kg~~-----~ildG------~L~~~vk~des~Wti-Ed~k~i~i~ 92 (179)
T KOG2265|consen 27 LEEVEIQIPVP--PGTAKSKDVHCSIQSKHIKVGLKGQP-----PILDG------ELSHSVKVDESTWTI-EDGKMIVIL 92 (179)
T ss_pred hhheEEEeecC--CCCcccceEEEEeeeeEEEEecCCCC-----ceecC------ccccccccccceEEe-cCCEEEEEE
Confidence 34566676676 688 9999999999999988765432 12333 355678888888888 699988888
Q ss_pred eCcCC
Q psy4755 98 PKRTL 102 (147)
Q Consensus 98 PK~~~ 102 (147)
-++..
T Consensus 93 l~K~~ 97 (179)
T KOG2265|consen 93 LKKSN 97 (179)
T ss_pred eeccc
Confidence 77654
No 42
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=71.25 E-value=9 Score=23.70 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=19.4
Q ss_pred CCCCCCeEEEEECCEEEEEEEEc
Q psy4755 33 GAPSHEISIKTVDGFILVEGKHE 55 (147)
Q Consensus 33 G~~~edI~V~v~~~~L~I~g~~~ 55 (147)
+|...+|+|.+.++.++++|.-.
T Consensus 13 ~~~~~~i~v~v~~g~v~L~G~v~ 35 (64)
T PF04972_consen 13 WLPDSNISVSVENGVVTLSGEVP 35 (64)
T ss_dssp CTT-TTEEEEEECTEEEEEEEES
T ss_pred ccCCCeEEEEEECCEEEEEeeCc
Confidence 67777999999999999999753
No 43
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=71.15 E-value=6.4 Score=26.94 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=28.9
Q ss_pred EEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcCC
Q psy4755 67 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTL 102 (147)
Q Consensus 67 ~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~PK~~~ 102 (147)
.|.=...|| +++.++|+-++. +|.|+|+.-+...
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~-~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVK-DGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEE-CCEEEEEEEEecc
Confidence 466668998 899999999995 9999999988654
No 44
>PF14913 DPCD: DPCD protein family
Probab=70.71 E-value=28 Score=27.59 Aligned_cols=71 Identities=13% Similarity=0.256 Sum_probs=52.2
Q ss_pred cccCCeEEEEEEcCCCCCCCCCCeEEEEEC--CEEEEEEEEceeeCCcceEEEEEEEEEECCC------CcccCCcEEEc
Q psy4755 16 IRKPRALTLPFCIPSFLGAPSHEISIKTVD--GFILVEGKHEEKEDEHGFISRQFKRRYLLPK------DVEIEKVTSSL 87 (147)
Q Consensus 16 ~d~e~~~~l~~~lpDvpG~~~edI~V~v~~--~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~------~Vd~~~i~A~~ 87 (147)
-|+..+|+.++- ++| +..+-..|++++ +.++|+-.. ..|.++|.+|+ ..+.++++..+
T Consensus 92 ~dTk~~fqWRIR--NLP-YP~dvYsVtvd~~~r~ivvRTtN-----------KKYyKk~~IPDl~R~~l~l~~~~ls~~h 157 (194)
T PF14913_consen 92 RDTKTSFQWRIR--NLP-YPKDVYSVTVDEDERCIVVRTTN-----------KKYYKKFSIPDLDRCGLPLEQSALSFAH 157 (194)
T ss_pred EcCccceEEEEc--cCC-CCccceEEEEcCCCcEEEEECcC-----------ccceeEecCCcHHhhCCCcchhhceeee
Confidence 458888989887 333 788888888885 457776532 23566688875 35778899999
Q ss_pred CCCCEEEEEEeCcC
Q psy4755 88 SSDGVLTITAPKRT 101 (147)
Q Consensus 88 ~~dGvL~I~~PK~~ 101 (147)
.|..|.|+..|..
T Consensus 158 -~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 158 -QNNTLIISYKKPK 170 (194)
T ss_pred -ecCeEEEEecCcH
Confidence 4999999998764
No 45
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=70.29 E-value=11 Score=25.48 Aligned_cols=31 Identities=29% Similarity=0.507 Sum_probs=26.4
Q ss_pred eEEEEEEcCCCCCCCCCCeEEEE-ECCEEEEEEE
Q psy4755 21 ALTLPFCIPSFLGAPSHEISIKT-VDGFILVEGK 53 (147)
Q Consensus 21 ~~~l~~~lpDvpG~~~edI~V~v-~~~~L~I~g~ 53 (147)
.|.=++.|| .+++.+.|+=++ ++|.|+|+|+
T Consensus 51 ~F~R~~~LP--~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLP--DGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred EEEEEEECC--CCcchheEEEEEcCCCEEEEEec
Confidence 666778877 489999999998 7999999984
No 46
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=69.79 E-value=10 Score=24.34 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=29.1
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEG 52 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g 52 (147)
....|.-.+.|| .+++.+.++..+.+|.|+|..
T Consensus 54 ~~~~f~r~~~LP--~~vd~~~i~a~~~~G~L~I~~ 86 (88)
T cd06464 54 SYGSFSRSFRLP--EDVDPDKIKASLENGVLTITL 86 (88)
T ss_pred eCcEEEEEEECC--CCcCHHHcEEEEeCCEEEEEE
Confidence 467888899988 589999999999999999975
No 47
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=66.43 E-value=28 Score=25.21 Aligned_cols=59 Identities=27% Similarity=0.331 Sum_probs=35.5
Q ss_pred CeEEEEECCEEEEEEEEceeeCCcceEE----EEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy4755 38 EISIKTVDGFILVEGKHEEKEDEHGFIS----RQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 97 (147)
Q Consensus 38 dI~V~v~~~~L~I~g~~~~~~~~~~~~~----r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 97 (147)
.+++..++++|.|+.+.....-..++.. ..-.=.+.||.+...+++..... +|-+.|.-
T Consensus 86 ~~~~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~~-~G~i~i~~ 148 (166)
T PF13349_consen 86 KPEISVEGGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKTS-SGDITIED 148 (166)
T ss_pred EEEEEEcCCEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEec-cccEEEEc
Confidence 5677777777777776211100111111 12455678888887778888884 88888763
No 48
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=66.19 E-value=13 Score=25.74 Aligned_cols=31 Identities=13% Similarity=0.315 Sum_probs=27.2
Q ss_pred CeEEEEEEcCCCCCCCCCCeEEEEE-CCEEEEEE
Q psy4755 20 RALTLPFCIPSFLGAPSHEISIKTV-DGFILVEG 52 (147)
Q Consensus 20 ~~~~l~~~lpDvpG~~~edI~V~v~-~~~L~I~g 52 (147)
.+|.-.+.|| .+++.+.|+-.+. +|.|+|++
T Consensus 58 r~F~R~~~LP--~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLP--PEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECC--CCCCchhEEEEeCCCCeEEEEc
Confidence 5677788888 5999999999999 99999987
No 49
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=66.19 E-value=12 Score=25.22 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=28.1
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEG 52 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g 52 (147)
....|.-.+.|| .+++++.|+-.+.+|.|+|+-
T Consensus 58 ~~g~f~r~i~LP--~~v~~~~i~A~~~nGvL~I~l 90 (92)
T cd06472 58 SSGRFVRRFRLP--ENADADEVKAFLENGVLTVTV 90 (92)
T ss_pred eccEEEEEEECC--CCCCHHHCEEEEECCEEEEEe
Confidence 356788888988 379999999999999999974
No 50
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=65.98 E-value=37 Score=22.75 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=47.9
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcC-CCCEEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLS-SDGVLTIT 96 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~-~dGvL~I~ 96 (147)
+++.++|.+-.. .-+....++.+....+.|.|+-... + ..|...+.|=..|+++. +.++. .-|-+.|.
T Consensus 6 t~~~Vtitiy~K-~~~~~~~~v~v~~~~~~l~v~~~~~----~-----~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~ 74 (87)
T cd06490 6 TDSEVTIVVYTK-SKGNPADIVIVDDQQRELRVEIILG----D-----KSYLLHLDLSNEVQWPC-EVRISTETGKIELV 74 (87)
T ss_pred CCCEEEEEEEEc-ccCCCCccEEEECCCCEEEEEEECC----C-----ceEEEeeeccccCCCCc-EEEEcccCceEEEE
Confidence 466777777643 1145555666666777898876432 1 22556678888888774 44442 26899999
Q ss_pred EeCcCC
Q psy4755 97 APKRTL 102 (147)
Q Consensus 97 ~PK~~~ 102 (147)
+.|.++
T Consensus 75 L~K~e~ 80 (87)
T cd06490 75 LKKKEP 80 (87)
T ss_pred EEcCCC
Confidence 999764
No 51
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=65.21 E-value=11 Score=24.81 Aligned_cols=31 Identities=19% Similarity=0.430 Sum_probs=27.1
Q ss_pred CeEEEEEEcCCCCCCCCCCeEEEEEC-CEEEEEE
Q psy4755 20 RALTLPFCIPSFLGAPSHEISIKTVD-GFILVEG 52 (147)
Q Consensus 20 ~~~~l~~~lpDvpG~~~edI~V~v~~-~~L~I~g 52 (147)
..|.-.+.|| .+++++.|+-++.+ |.|+|++
T Consensus 50 ~~f~r~~~LP--~~vd~~~i~A~~~~~GvL~I~~ 81 (83)
T cd06526 50 REFTRRYQLP--EGVDPDSVTSSLSSDGVLTIEA 81 (83)
T ss_pred EEEEEEEECC--CCCChHHeEEEeCCCcEEEEEe
Confidence 5778888888 48999999999997 9999986
No 52
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=65.15 E-value=12 Score=25.20 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=28.3
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEcee
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEK 57 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~ 57 (147)
....|.-.+.||+ +++.+.|+-.+.+|.|+|..-+...
T Consensus 53 ~~~~f~r~~~lP~--~vd~~~i~a~~~~GvL~I~~pk~~~ 90 (102)
T PF00011_consen 53 RYGSFERSIRLPE--DVDPDKIKASYENGVLTITIPKKEE 90 (102)
T ss_dssp -SEEEEEEEE-ST--TB-GGG-EEEETTSEEEEEEEBSSS
T ss_pred ccceEEEEEcCCC--cCCcceEEEEecCCEEEEEEEcccc
Confidence 3457778899983 8999999999999999999965543
No 53
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=64.69 E-value=13 Score=24.90 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=28.1
Q ss_pred EEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcC
Q psy4755 67 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRT 101 (147)
Q Consensus 67 ~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~PK~~ 101 (147)
.|.=.+.|| +++++.|+-.+. +|.|+|+.-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~-~~~L~I~g~~~~ 40 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVL-GDFVEIHGKHEE 40 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEE-CCEEEEEEEEce
Confidence 477779998 899999999995 999999997543
No 54
>PRK10743 heat shock protein IbpA; Provisional
Probab=64.31 E-value=20 Score=26.52 Aligned_cols=33 Identities=6% Similarity=0.168 Sum_probs=27.1
Q ss_pred EEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcCC
Q psy4755 68 FKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTL 102 (147)
Q Consensus 68 F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~PK~~~ 102 (147)
|.=...|| +++.++|.-.+. +|+|+|..-+...
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~-~~~LtI~ge~~~~ 79 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQ-DNLLVVKGAHADE 79 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEE-CCEEEEEEEECcc
Confidence 55557888 899999999994 9999999976543
No 55
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=63.07 E-value=13 Score=25.11 Aligned_cols=35 Identities=11% Similarity=0.234 Sum_probs=29.3
Q ss_pred EEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcCCC
Q psy4755 67 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTLQ 103 (147)
Q Consensus 67 ~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~PK~~~~ 103 (147)
+|.=.+.|| ++..++|+-.+ .+|.|+|+..+....
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~-~~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEV-ENNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEcccc
Confidence 466679999 69999999999 599999999877653
No 56
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=61.69 E-value=13 Score=25.00 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=27.7
Q ss_pred EEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcC
Q psy4755 67 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRT 101 (147)
Q Consensus 67 ~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~PK~~ 101 (147)
.|.=.+.|| ++.++.|+..+. ||.|+|+.-+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~-~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTV-DNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEE-CCEEEEEEEEcc
Confidence 366678898 799999999995 999999997643
No 57
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=61.31 E-value=14 Score=24.87 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=27.0
Q ss_pred CeEEEEEEcCCCCCCCCCCeEEEE-ECCEEEEEEE
Q psy4755 20 RALTLPFCIPSFLGAPSHEISIKT-VDGFILVEGK 53 (147)
Q Consensus 20 ~~~~l~~~lpDvpG~~~edI~V~v-~~~~L~I~g~ 53 (147)
..|.=++.|| .+++++.|+=++ .+|.|+|++.
T Consensus 48 g~F~R~~~LP--~~vd~e~v~A~l~~~GvL~I~~~ 80 (81)
T cd06479 48 NTFTHKCQLP--EDVDPTSVSSSLGEDGTLTIKAR 80 (81)
T ss_pred EEEEEEEECC--CCcCHHHeEEEecCCCEEEEEec
Confidence 4666678887 489999999998 8999999875
No 58
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=60.27 E-value=15 Score=24.76 Aligned_cols=32 Identities=6% Similarity=0.125 Sum_probs=27.4
Q ss_pred CCeEEEEEEcCCCCCCCCCCeEEEE-ECCEEEEEE
Q psy4755 19 PRALTLPFCIPSFLGAPSHEISIKT-VDGFILVEG 52 (147)
Q Consensus 19 e~~~~l~~~lpDvpG~~~edI~V~v-~~~~L~I~g 52 (147)
...|.=.+.|| .+++.+.|+-.+ .+|.|+|++
T Consensus 53 ~~~F~R~~~LP--~~Vd~~~i~A~~~~dGvL~I~~ 85 (87)
T cd06481 53 YQEFVREAQLP--EHVDPEAVTCSLSPSGHLHIRA 85 (87)
T ss_pred eeEEEEEEECC--CCcChHHeEEEeCCCceEEEEc
Confidence 35677788887 489999999999 899999986
No 59
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=59.86 E-value=17 Score=24.33 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEE
Q psy4755 20 RALTLPFCIPSFLGAPSHEISIKTVDGFILVEG 52 (147)
Q Consensus 20 ~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g 52 (147)
..|.-.+.|| .+..+.|+-++.+|.|+|+-
T Consensus 62 g~f~r~~~lp---~v~~~~i~A~~~dGvL~I~l 91 (93)
T cd06471 62 GSFSRSFYLP---NVDEEEIKAKYENGVLKITL 91 (93)
T ss_pred cEEEEEEECC---CCCHHHCEEEEECCEEEEEE
Confidence 4455566665 89999999999999999974
No 60
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=56.81 E-value=44 Score=25.94 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=17.2
Q ss_pred CCCeEEEEECCEEEEEEEE
Q psy4755 36 SHEISIKTVDGFILVEGKH 54 (147)
Q Consensus 36 ~edI~V~v~~~~L~I~g~~ 54 (147)
|++++|+++++.|+|+|..
T Consensus 13 P~~V~v~i~~~~v~VkGp~ 31 (180)
T PRK05518 13 PEGVTVEIEGLVVTVKGPK 31 (180)
T ss_pred CCCCEEEEECCEEEEECCC
Confidence 7899999999999999954
No 61
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=56.77 E-value=21 Score=24.08 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=25.0
Q ss_pred EEEEEEcCCCCCCCCCCeEEEE-ECCEEEEEE
Q psy4755 22 LTLPFCIPSFLGAPSHEISIKT-VDGFILVEG 52 (147)
Q Consensus 22 ~~l~~~lpDvpG~~~edI~V~v-~~~~L~I~g 52 (147)
|.=++.|| .+++++.|+-.+ .+|.|+|+.
T Consensus 55 f~R~~~LP--~~Vd~~~i~A~~~~dGvL~I~~ 84 (86)
T cd06497 55 FHRRYRLP--SNVDQSAITCSLSADGMLTFSG 84 (86)
T ss_pred EEEEEECC--CCCChHHeEEEeCCCCEEEEEe
Confidence 66678887 489999999999 799999986
No 62
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=56.48 E-value=35 Score=26.71 Aligned_cols=47 Identities=19% Similarity=0.336 Sum_probs=30.5
Q ss_pred CCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEEe
Q psy4755 36 SHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 98 (147)
Q Consensus 36 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 98 (147)
|++++|+++++.|+|+|.. |-+.+.|.. .| ..|.... +||.|.|+..
T Consensus 13 P~~V~V~i~~~~v~VkGp~-------G~L~~~~~~---~~-----~~i~i~~-~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKSRKVTVTGKY-------GELTRSFRH---LP-----VDIKLSK-DGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEECCEEEEECCC-------ceEEEEecC---CC-----ceEEEEe-CCCEEEEEeC
Confidence 7999999999999999944 222222221 11 2455566 4888777744
No 63
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=56.37 E-value=31 Score=25.71 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=27.0
Q ss_pred EEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcC
Q psy4755 68 FKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRT 101 (147)
Q Consensus 68 F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~PK~~ 101 (147)
|.=...|| +++.++|.-.+ .+|.|+|+.-+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v-~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQL-EGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 56668898 89999999999 5999999997654
No 64
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=54.47 E-value=62 Score=24.83 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=17.1
Q ss_pred CCCeEEEEECCEEEEEEEE
Q psy4755 36 SHEISIKTVDGFILVEGKH 54 (147)
Q Consensus 36 ~edI~V~v~~~~L~I~g~~ 54 (147)
|++++|+++++.|+|+|..
T Consensus 7 P~~V~v~i~~~~i~vkGp~ 25 (170)
T TIGR03653 7 PEGVSVTIEGNIVTVKGPK 25 (170)
T ss_pred CCCCEEEEeCCEEEEECCC
Confidence 6899999999999999954
No 65
>KOG3158|consensus
Probab=54.41 E-value=71 Score=25.01 Aligned_cols=72 Identities=8% Similarity=0.198 Sum_probs=52.4
Q ss_pred ccCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEE
Q psy4755 17 RKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 96 (147)
Q Consensus 17 d~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 96 (147)
.+.+-+.|++++. +..+.+|.++...|+++|+... +. -.+.-.|.|=..||+++.+-+-+ +.+.+.
T Consensus 14 qr~~~vyltv~Ve-----d~~d~~v~~e~~~l~fs~k~~~--d~-----~~~~~~ief~~eIdpe~sk~k~~--~r~if~ 79 (180)
T KOG3158|consen 14 QRRDLVYLTVCVE-----DAKDVHVNLEPSKLTFSCKSGA--DN-----HKYENEIEFFDEIDPEKSKHKRT--SRSIFC 79 (180)
T ss_pred hhcCeEEEEEEec-----cCccceeeccccEEEEEeccCC--Cc-----eeeEEeeehhhhcCHhhcccccc--ceEEEE
Confidence 3577788888875 6788999999999999997642 12 12445577778899999888774 666666
Q ss_pred EeCcCC
Q psy4755 97 APKRTL 102 (147)
Q Consensus 97 ~PK~~~ 102 (147)
++++..
T Consensus 80 i~~K~e 85 (180)
T KOG3158|consen 80 ILRKKE 85 (180)
T ss_pred EEEccc
Confidence 666544
No 66
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=53.83 E-value=36 Score=21.63 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=27.5
Q ss_pred CeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEc
Q psy4755 20 RALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHE 55 (147)
Q Consensus 20 ~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~ 55 (147)
..|.+.++|+ ..+++++.+.++.++.|.|.=.+.
T Consensus 36 ~~~~~~~~l~--~~I~~e~~~~~~~~~~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLA--APIDDEKSSAKIGNGVLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCc--ccccccccEEEEeCCEEEEEEEeC
Confidence 4577788876 368999999999999999987554
No 67
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=52.39 E-value=32 Score=25.25 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=30.5
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEECCEEEEEEEEce
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEE 56 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~~~~L~I~g~~~~ 56 (147)
....|.-++.||+ +++++.++-++.+|.|+|.-.+..
T Consensus 98 ~~~~f~r~~~Lp~--~v~~~~~~A~~~nGvL~I~lpk~~ 134 (146)
T COG0071 98 AYGEFERTFRLPE--KVDPEVIKAKYKNGLLTVTLPKAE 134 (146)
T ss_pred EeeeEEEEEECcc--cccccceeeEeeCcEEEEEEeccc
Confidence 3567888888883 788889999999999999986644
No 68
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=51.78 E-value=27 Score=23.51 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=28.5
Q ss_pred EEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcC
Q psy4755 67 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRT 101 (147)
Q Consensus 67 ~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~PK~~ 101 (147)
.|.=.+.|| ++++++|.-.+. ++.|+|+.-+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~-~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTK-DGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEE-CCEEEEEEEECc
Confidence 477789998 799999999994 999999997754
No 69
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=51.59 E-value=53 Score=25.30 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=16.9
Q ss_pred CCCeEEEEECCEEEEEEEE
Q psy4755 36 SHEISIKTVDGFILVEGKH 54 (147)
Q Consensus 36 ~edI~V~v~~~~L~I~g~~ 54 (147)
|++++|+++++.|+|+|..
T Consensus 12 P~~V~v~i~~~~v~vkGp~ 30 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPK 30 (178)
T ss_pred CCCCEEEEECCEEEEECCC
Confidence 6899999999999999943
No 70
>KOG3591|consensus
Probab=49.08 E-value=24 Score=27.22 Aligned_cols=35 Identities=14% Similarity=0.341 Sum_probs=28.6
Q ss_pred CeEEEEEEcCCCCCCCCCCeEEEEE-CCEEEEEEEEce
Q psy4755 20 RALTLPFCIPSFLGAPSHEISIKTV-DGFILVEGKHEE 56 (147)
Q Consensus 20 ~~~~l~~~lpDvpG~~~edI~V~v~-~~~L~I~g~~~~ 56 (147)
.+|.=++-|| .|++++.|.=.+. +|.|+|+|....
T Consensus 115 R~F~R~y~LP--~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 115 RSFVRKYLLP--EDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred EEEEEEecCC--CCCChhheEEeeCCCceEEEEccCCC
Confidence 3555667788 5999999999999 799999996544
No 71
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=48.35 E-value=34 Score=22.90 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=26.0
Q ss_pred eEEEEEEcCCCCCCCCCCeEEEEE-CCEEEEEEE
Q psy4755 21 ALTLPFCIPSFLGAPSHEISIKTV-DGFILVEGK 53 (147)
Q Consensus 21 ~~~l~~~lpDvpG~~~edI~V~v~-~~~L~I~g~ 53 (147)
.|.=.+.|| .+++++.|+-++. +|.|+|+.-
T Consensus 51 eF~R~~~LP--~~vd~~~i~A~~~~dGvL~I~lP 82 (84)
T cd06498 51 EFQRKYRIP--ADVDPLTITSSLSPDGVLTVCGP 82 (84)
T ss_pred EEEEEEECC--CCCChHHcEEEeCCCCEEEEEEe
Confidence 366678887 4899999999996 999999874
No 72
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=43.26 E-value=18 Score=23.15 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.8
Q ss_pred CCCCCCeEEEEECCEEEEEEEE
Q psy4755 33 GAPSHEISIKTVDGFILVEGKH 54 (147)
Q Consensus 33 G~~~edI~V~v~~~~L~I~g~~ 54 (147)
-|+.+.|.|....+.|.|.|+.
T Consensus 22 ~f~~~~I~l~t~~g~l~I~G~~ 43 (66)
T PF07873_consen 22 SFDDEEIRLNTKKGKLTIKGEG 43 (66)
T ss_dssp EEETTEEEEEETTEEEEEEEEE
T ss_pred EECCCEEEEEeCCEEEEEECce
Confidence 4789999999999999999964
No 73
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=43.20 E-value=33 Score=25.44 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.0
Q ss_pred CCCCCCCeEEEEECCEEEEEEEEc
Q psy4755 32 LGAPSHEISIKTVDGFILVEGKHE 55 (147)
Q Consensus 32 pG~~~edI~V~v~~~~L~I~g~~~ 55 (147)
.|....+|+|.+++|.++++|.-.
T Consensus 38 ~~~~~~~i~V~v~~G~v~l~G~v~ 61 (147)
T PRK11198 38 QGLGDADVNVQVEDGKATVSGDAA 61 (147)
T ss_pred cCCCcCCceEEEeCCEEEEEEEeC
Confidence 488888999999999999999644
No 74
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=42.57 E-value=43 Score=26.20 Aligned_cols=19 Identities=21% Similarity=0.546 Sum_probs=17.2
Q ss_pred CCCeEEEEECCEEEEEEEE
Q psy4755 36 SHEISIKTVDGFILVEGKH 54 (147)
Q Consensus 36 ~edI~V~v~~~~L~I~g~~ 54 (147)
|++++|+++++.|+|+|..
T Consensus 12 P~~V~V~i~~~~ItVkGpk 30 (189)
T PTZ00179 12 PEDVTVSVKDRIVTVKGKR 30 (189)
T ss_pred CCCCEEEEeCCEEEEECCC
Confidence 6999999999999999954
No 75
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=38.12 E-value=25 Score=23.93 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.8
Q ss_pred CCCCCCeEEEEECCEEEEEEEE
Q psy4755 33 GAPSHEISIKTVDGFILVEGKH 54 (147)
Q Consensus 33 G~~~edI~V~v~~~~L~I~g~~ 54 (147)
-|+.+.|.+....+.|.|+|+.
T Consensus 40 ~y~~~~I~l~t~~G~l~I~G~~ 61 (85)
T TIGR02856 40 VFSPEEVKLNSTNGKITIEGKN 61 (85)
T ss_pred EECCCEEEEEcCceEEEEEccc
Confidence 5789999999999999999964
No 76
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=35.04 E-value=33 Score=23.49 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.7
Q ss_pred CCCCCCeEEEEECCEEEEEEEE
Q psy4755 33 GAPSHEISIKTVDGFILVEGKH 54 (147)
Q Consensus 33 G~~~edI~V~v~~~~L~I~g~~ 54 (147)
-|+.+.|.+....+.|+|+|+.
T Consensus 21 sfd~~~I~l~T~~G~L~I~G~~ 42 (85)
T TIGR02892 21 SFDDEEILLETVMGFLTIKGQE 42 (85)
T ss_pred EECCCEEEEEeCcEEEEEEcce
Confidence 5889999999999999999963
No 77
>KOG3413|consensus
Probab=33.82 E-value=21 Score=27.14 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=18.0
Q ss_pred CCCCcccCCcEEEcCCCCEEEEEEe
Q psy4755 74 LPKDVEIEKVTSSLSSDGVLTITAP 98 (147)
Q Consensus 74 LP~~Vd~~~i~A~~~~dGvL~I~~P 98 (147)
|-+.++.+.--+.|. ||||+|.++
T Consensus 65 l~e~~~~~~~Dv~y~-~GVLTl~lg 88 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDYA-DGVLTLKLG 88 (156)
T ss_pred HHhhcCccccccccc-cceEEEEec
Confidence 334555566678995 999999998
No 78
>PF14913 DPCD: DPCD protein family
Probab=32.90 E-value=43 Score=26.52 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=27.2
Q ss_pred CCeEEEEEEcCCCC--CC--CCCCeEEEEECCEEEEEEEEc
Q psy4755 19 PRALTLPFCIPSFL--GA--PSHEISIKTVDGFILVEGKHE 55 (147)
Q Consensus 19 e~~~~l~~~lpDvp--G~--~~edI~V~v~~~~L~I~g~~~ 55 (147)
...|.=++.+||+- |+ ..+.|++...+|+|+|+-+..
T Consensus 129 NKKYyKk~~IPDl~R~~l~l~~~~ls~~h~nNTLIIsYkKP 169 (194)
T PF14913_consen 129 NKKYYKKFSIPDLDRCGLPLEQSALSFAHQNNTLIISYKKP 169 (194)
T ss_pred CccceeEecCCcHHhhCCCcchhhceeeeecCeEEEEecCc
Confidence 44555578888776 44 466788888899999998654
No 79
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=32.90 E-value=65 Score=20.34 Aligned_cols=21 Identities=10% Similarity=0.401 Sum_probs=17.7
Q ss_pred CCCC-CCCeEEEEECCEEEEEE
Q psy4755 32 LGAP-SHEISIKTVDGFILVEG 52 (147)
Q Consensus 32 pG~~-~edI~V~v~~~~L~I~g 52 (147)
.||. -+.|+|++..+.|+|+.
T Consensus 36 aGF~~G~~v~V~v~~g~lvIt~ 57 (57)
T PF08845_consen 36 AGFTIGDPVKVRVMPGCLVITP 57 (57)
T ss_pred hCCCCCCEEEEEEECCEEEEeC
Confidence 3996 56899999999999973
No 80
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=32.78 E-value=47 Score=23.44 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=14.6
Q ss_pred CCcEEEcCCCCEEEEEEe
Q psy4755 81 EKVTSSLSSDGVLTITAP 98 (147)
Q Consensus 81 ~~i~A~~~~dGvL~I~~P 98 (147)
..+.+.+. +|||+|+++
T Consensus 28 ~d~D~e~~-~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQ-GGVLTLTFG 44 (105)
T ss_pred cCEeeecc-CCEEEEEEC
Confidence 56778895 999999998
No 81
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=32.22 E-value=47 Score=25.46 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=16.0
Q ss_pred CCCeEEEEECCEEEEEEE
Q psy4755 36 SHEISIKTVDGFILVEGK 53 (147)
Q Consensus 36 ~edI~V~v~~~~L~I~g~ 53 (147)
|++|+|+++++.|+|+|.
T Consensus 11 P~~V~v~~~~~~v~v~Gp 28 (175)
T TIGR03654 11 PAGVEVTIDGNVVTVKGP 28 (175)
T ss_pred CCCcEEEEeCCEEEEEcC
Confidence 689999999999999994
No 82
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=31.00 E-value=50 Score=25.35 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=16.1
Q ss_pred CCCeEEEEECCEEEEEEE
Q psy4755 36 SHEISIKTVDGFILVEGK 53 (147)
Q Consensus 36 ~edI~V~v~~~~L~I~g~ 53 (147)
|++++|+++++.|+|+|.
T Consensus 12 P~~V~v~~~~~~v~vkGp 29 (178)
T PRK05498 12 PAGVEVTINGNVVTVKGP 29 (178)
T ss_pred CCCCEEEEECCEEEEECC
Confidence 689999999999999994
No 83
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=28.46 E-value=61 Score=22.80 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.2
Q ss_pred CcEEEcCCCCEEEEEEeC
Q psy4755 82 KVTSSLSSDGVLTITAPK 99 (147)
Q Consensus 82 ~i~A~~~~dGvL~I~~PK 99 (147)
.+.+.+. +|||+|+++.
T Consensus 26 d~D~e~~-~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERA-GGVLTLTFEN 42 (102)
T ss_pred CeeeecC-CCEEEEEECC
Confidence 4778895 9999999973
No 84
>PRK10568 periplasmic protein; Provisional
Probab=27.91 E-value=97 Score=24.14 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.9
Q ss_pred CCCCCCCeEEEEECCEEEEEEEEc
Q psy4755 32 LGAPSHEISIKTVDGFILVEGKHE 55 (147)
Q Consensus 32 pG~~~edI~V~v~~~~L~I~g~~~ 55 (147)
++++..+|+|.+.+|.+++.|.-.
T Consensus 73 ~~i~~~~I~V~v~~G~V~L~G~V~ 96 (203)
T PRK10568 73 DNIKSTDISVKTHQKVVTLSGFVE 96 (203)
T ss_pred CCCCCCceEEEEECCEEEEEEEeC
Confidence 477888999999999999999644
No 85
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=27.55 E-value=38 Score=21.62 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=15.7
Q ss_pred CCcEEEcCCCCEEEEEEeCcCCCCCCCCeEEeeee
Q psy4755 81 EKVTSSLSSDGVLTITAPKRTLQDKTTERPVPIVQ 115 (147)
Q Consensus 81 ~~i~A~~~~dGvL~I~~PK~~~~~~~~~r~I~I~~ 115 (147)
..|.|.| +||+|.--=|..-+. ...-+|.|..
T Consensus 3 ~~I~aiY-e~GvlkPl~~~~L~E--g~~V~i~I~~ 34 (60)
T PF01954_consen 3 KVIEAIY-ENGVLKPLEPVDLPE--GEEVKITIEE 34 (60)
T ss_dssp --EEEEE-ETTEEEECS-----T--TEEEEEEE--
T ss_pred ceEEEEE-ECCEEEECCCCCCCC--CCEEEEEEec
Confidence 4589999 699998765544331 2334455543
No 86
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=27.00 E-value=60 Score=22.96 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.1
Q ss_pred cEEEcCCCCEEEEEEeCc
Q psy4755 83 VTSSLSSDGVLTITAPKR 100 (147)
Q Consensus 83 i~A~~~~dGvL~I~~PK~ 100 (147)
+.+.+. +|||+|+++..
T Consensus 29 ~D~e~~-~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERN-GGVLTLTFENG 45 (105)
T ss_pred eeeecc-CCEEEEEECCC
Confidence 778895 99999999743
No 87
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=26.56 E-value=74 Score=20.23 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=29.2
Q ss_pred CCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEEe
Q psy4755 36 SHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 98 (147)
Q Consensus 36 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 98 (147)
|+.++|++.++.+++.|... .+ ++.||..|. +.... +|+.+.+...
T Consensus 2 P~gV~v~~~~~~i~v~G~~g-------~l------~~~~~~~v~---v~~~~-~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVKGPKG-------EL------SRPIPPGVK---VEIKV-EDNKITVSVL 47 (77)
T ss_dssp STTCEEEEETTEEEEESSSS-------EE------EEEETTTEE---EEEEE-ETTSEEEEEE
T ss_pred CCcEEEEEeCcEEEEECCCE-------eE------EEECCCCee---EEEEc-CCCceEEEEC
Confidence 57899999999999999432 22 256665543 22234 3666666554
No 88
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=26.32 E-value=2.5e+02 Score=26.57 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=39.5
Q ss_pred CCCCeEEEEECCEEEEEEEEceeeCCcceEEEEEEEEEECCCCcccCCcEEEcCCCCEEE-----EEEeCcCC
Q psy4755 35 PSHEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLT-----ITAPKRTL 102 (147)
Q Consensus 35 ~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~~~dGvL~-----I~~PK~~~ 102 (147)
...+|+|.++++.-..+-+..-.......+..+| +|+||++.-... -.++.||+|. +.++|...
T Consensus 417 ~Sh~VtVeIeg~iA~TEIEqTF~NPN~r~LEGEl--sFPLPEgAtVTG--yALdvdGkL~Daw~~VVVEKEKA 485 (952)
T TIGR02921 417 ANMAITVEEHGDNADIEIVETLENQTPENHEVFF--HFSLPEEAAITG--LWLGDDAKDDDKFAFALAPRGAA 485 (952)
T ss_pred eeeeEEEEEECCeEEEEEEEEEECCCCCceeEEE--EecCCCCCeeee--eeecCCccccccccceeccHHHH
Confidence 3456677777776655554333322223333333 499999887777 4555689998 88887654
No 89
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=25.25 E-value=1.8e+02 Score=18.10 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=21.3
Q ss_pred cCCeEEEEEEcCCCCCCCCCCeEEEEE-CCEEEEEE
Q psy4755 18 KPRALTLPFCIPSFLGAPSHEISIKTV-DGFILVEG 52 (147)
Q Consensus 18 ~e~~~~l~~~lpDvpG~~~edI~V~v~-~~~L~I~g 52 (147)
....+.|++..+ ||....-.|.+. +....|..
T Consensus 33 ~~G~~~v~v~~~---Gy~~~~~~v~v~~~~~~~v~~ 65 (71)
T PF08308_consen 33 PPGEHTVTVEKP---GYEPYTKTVTVKPGETTTVNV 65 (71)
T ss_pred CCccEEEEEEEC---CCeeEEEEEEECCCCEEEEEE
Confidence 466677777766 777777777777 44555554
No 90
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=24.61 E-value=1.3e+02 Score=23.39 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=17.7
Q ss_pred CCCCeEEEEECCEEEEEEEE
Q psy4755 35 PSHEISIKTVDGFILVEGKH 54 (147)
Q Consensus 35 ~~edI~V~v~~~~L~I~g~~ 54 (147)
.|++++|+++++.++|.|-+
T Consensus 11 ~P~gV~V~i~~~~v~vkGpk 30 (178)
T COG0097 11 IPAGVTVSIEGQVVTVKGPK 30 (178)
T ss_pred cCCCeEEEEeccEEEEECCC
Confidence 38999999999999999943
No 91
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=24.60 E-value=2.4e+02 Score=22.44 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=23.9
Q ss_pred EEEECCEEEEEEEEceee---CCcce-----------EEEEEEEEEECCCC
Q psy4755 41 IKTVDGFILVEGKHEEKE---DEHGF-----------ISRQFKRRYLLPKD 77 (147)
Q Consensus 41 V~v~~~~L~I~g~~~~~~---~~~~~-----------~~r~F~R~~~LP~~ 77 (147)
|.++++.|+|+++++... ....| .+..|+=+++||..
T Consensus 60 v~v~~G~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDGNLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECCEEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 577899999999776431 11112 23467888888853
No 92
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=23.52 E-value=69 Score=22.63 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=14.8
Q ss_pred CCcEEEcCCCCEEEEEEeC
Q psy4755 81 EKVTSSLSSDGVLTITAPK 99 (147)
Q Consensus 81 ~~i~A~~~~dGvL~I~~PK 99 (147)
..+.+.+. +|||+|+++.
T Consensus 30 ~d~d~e~~-~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERS-GGVLTIEFPD 47 (109)
T ss_dssp STEEEEEE-TTEEEEEETT
T ss_pred CceEEEcc-CCEEEEEECC
Confidence 36889995 9999999953
No 93
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=23.07 E-value=2.6e+02 Score=21.49 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=29.5
Q ss_pred CCCCCeEEEEECCEEEEEEEEceee----------CCcceEEEEEEEEEECCCCcccCCcEEEc
Q psy4755 34 APSHEISIKTVDGFILVEGKHEEKE----------DEHGFISRQFKRRYLLPKDVEIEKVTSSL 87 (147)
Q Consensus 34 ~~~edI~V~v~~~~L~I~g~~~~~~----------~~~~~~~r~F~R~~~LP~~Vd~~~i~A~~ 87 (147)
+.+++++| +++.|.|++.++... ....+.+..|+=++.+|.. .-.+.|-+
T Consensus 29 ~~~~nv~v--~~g~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afw 88 (212)
T cd02175 29 WSADNVEF--SDGGLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFF 88 (212)
T ss_pred EccccEEE--ECCeEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEE
Confidence 34677655 589999998765321 0112344578888888853 33344444
No 94
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=22.75 E-value=70 Score=22.31 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=12.3
Q ss_pred EEEcCCCCEEEEEEeC
Q psy4755 84 TSSLSSDGVLTITAPK 99 (147)
Q Consensus 84 ~A~~~~dGvL~I~~PK 99 (147)
.+.+. +|||+|+++.
T Consensus 30 D~e~~-~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEYS-SGVLTLELPS 44 (97)
T ss_pred ccccC-CCEEEEEECC
Confidence 67885 9999999953
No 95
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=22.13 E-value=1e+02 Score=22.34 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=17.1
Q ss_pred CCCCCCCCCeEEEEECCEEEEEEE
Q psy4755 30 SFLGAPSHEISIKTVDGFILVEGK 53 (147)
Q Consensus 30 DvpG~~~edI~V~v~~~~L~I~g~ 53 (147)
|+..+++++|.+.=++++|+|.--
T Consensus 53 DLs~i~~~~i~~d~~~~~i~I~LP 76 (157)
T PF14014_consen 53 DLSKIKEEDIEVDEDGKTITITLP 76 (157)
T ss_pred EhHHCCcceEEEcCCCCEEEEECC
Confidence 455666777666668889999863
No 96
>PRK10568 periplasmic protein; Provisional
Probab=22.05 E-value=1.4e+02 Score=23.31 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.1
Q ss_pred CCCCCCCeEEEEECCEEEEEEEE
Q psy4755 32 LGAPSHEISIKTVDGFILVEGKH 54 (147)
Q Consensus 32 pG~~~edI~V~v~~~~L~I~g~~ 54 (147)
+.+...+|+|.+++|.+++.|.-
T Consensus 152 ~~v~~~~I~V~v~~G~V~L~G~V 174 (203)
T PRK10568 152 DIVPSRKVKVETTDGVVQLSGTV 174 (203)
T ss_pred CCCCcceeEEEEeCcEEEEEEEE
Confidence 35778899999999999999965
No 97
>PRK11023 outer membrane lipoprotein; Provisional
Probab=20.76 E-value=1.5e+02 Score=22.84 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.5
Q ss_pred CCCCCCCCeEEEEECCEEEEEEEEc
Q psy4755 31 FLGAPSHEISIKTVDGFILVEGKHE 55 (147)
Q Consensus 31 vpG~~~edI~V~v~~~~L~I~g~~~ 55 (147)
-++++..+|+|.+.+|.+++.|.-.
T Consensus 139 ~~~v~~~~I~V~t~~G~V~L~G~v~ 163 (191)
T PRK11023 139 SDSVKSSNVKVTTENGEVFLLGLVT 163 (191)
T ss_pred CCCCCcceEEEEEECcEEEEEEEeC
Confidence 3578889999999999999999653
No 98
>PRK02913 hypothetical protein; Provisional
Probab=20.49 E-value=74 Score=24.21 Aligned_cols=14 Identities=43% Similarity=0.703 Sum_probs=11.4
Q ss_pred EcCCCCEEEEEEeC
Q psy4755 86 SLSSDGVLTITAPK 99 (147)
Q Consensus 86 ~~~~dGvL~I~~PK 99 (147)
.++|||+|.|.+-+
T Consensus 113 NLSEDgiLVi~Le~ 126 (150)
T PRK02913 113 NLSEDGILVIDLEQ 126 (150)
T ss_pred ccccCCEEEEEecC
Confidence 45689999999865
Done!