RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4755
(147 letters)
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 107 bits (269), Expect = 1e-30
Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 37 HEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 96
E+ +K + I V GKHEE++DEHGFISR+F R+Y +P DV+ +TSSLSSDGVLT+
Sbjct: 87 EELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVN 146
Query: 97 APKRTLQDKTTERPVPIVQTGVPALKPQ 124
P++ + ER +PI + PA+
Sbjct: 147 GPRKQVSGP--ERTIPITREEKPAVTAA 172
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 101 bits (253), Expect = 3e-29
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 37 HEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 96
E+++KT DG + + GKH ++DEHG+ISR F R+Y LP V+ +V+SSLS +G LT+
Sbjct: 21 DELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVE 80
Query: 97 APK 99
AP
Sbjct: 81 APM 83
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 99.6 bits (248), Expect = 3e-28
Identities = 31/81 (38%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Query: 37 HEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 96
++++K + F+ + GKH E++D+HG+ISR+F RRY LP +V+ ++ SLS+DG+LT +
Sbjct: 26 EDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFS 85
Query: 97 APK--RTLQDKTTERPVPIVQ 115
PK + +ER +P+ +
Sbjct: 86 GPKIPSGVDAGHSERAIPVSR 106
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 96.4 bits (240), Expect = 3e-27
Identities = 34/67 (50%), Positives = 49/67 (73%)
Query: 37 HEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 96
E+ +K + I V GKHEE++DEHGFISR+F R+Y +P DV+ +TSS+SSDGVLT+
Sbjct: 20 EELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVN 79
Query: 97 APKRTLQ 103
P++ +
Sbjct: 80 GPRKQVS 86
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 96.0 bits (239), Expect = 5e-27
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 38 EISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 97
EIS+K V + V +HEE+ DEHGFI+R+F RRY LP V+ VTS+LS +GVL+I A
Sbjct: 26 EISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQA 85
Query: 98 PKRTLQDKTTERPVPIVQ 115
+ Q P P
Sbjct: 86 TPASAQ---ASLPSPPAA 100
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 86.4 bits (213), Expect = 3e-21
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 26 FCIPSFLGAPSHEISIKTVDGFILVEG---KHEEKEDEHGFISRQFKRRYLLPKDVEIEK 82
+ ++ + + V G K E+ E+ R+F + ++ P+ V+ K
Sbjct: 237 LELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASK 296
Query: 83 VTSSLSSDGVLTITAPK 99
+ + DG++ + AP
Sbjct: 297 TQAEI-VDGLMVVEAPL 312
Score = 84.5 bits (208), Expect = 1e-20
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 1/101 (0%)
Query: 38 EISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 97
EI+IK ++V + +S R LP V+ + +++++D VL I A
Sbjct: 127 EITIKADKNKLVVRAQKSVA-CGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEA 185
Query: 98 PKRTLQDKTTERPVPIVQTGVPALKPQAPSSNSSTQQSQPI 138
P K + P+ + + + + + +
Sbjct: 186 PVNEPNYKAIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIV 226
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 55.4 bits (134), Expect = 1e-10
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 38 EISIKTVDGFILV---EGKHEEKEDEHGFISR-----QFKRRYLLPKDVEIEKVTSSLSS 89
E+ ++ DG +LV E E+++ + +F RR+ L +D ++E+V + L
Sbjct: 68 EVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLE- 126
Query: 90 DGVLTITAPKRTLQDKTTERPVPI 113
+GVLT+T PK K + + I
Sbjct: 127 NGVLTVTVPKAE-VKKPEVKAIQI 149
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 51.3 bits (124), Expect = 1e-09
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 38 EISIKTVDGFILVEG--KHEEKEDEHGFISR-----QFKRRYLLPKDVEIEKVTSSLSSD 90
+I ++ G + + G K E + F F RR+ LP + + +T++ +
Sbjct: 29 QIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAGR-N 87
Query: 91 GVLTITAPKR 100
GVL I PKR
Sbjct: 88 GVLEIRIPKR 97
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 47.8 bits (114), Expect = 8e-08
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 38 EISIKTVDGFILVEG--KHEEKEDEHGFISR------QFKRRYLLPKDVEIEKVTSSLSS 89
+I + V + + + I + R LP V+ E ++
Sbjct: 81 DIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFE- 139
Query: 90 DGVLTITAPKR 100
+GVL++ PK
Sbjct: 140 NGVLSVILPKA 150
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 41.4 bits (98), Expect = 1e-05
Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 38 EISIK-TVDGFILVEGKHEEKEDEHGFISR---QFKRRYLLPKDVEIE-KVTSSLSSDGV 92
+I + + +++E + E E ++++ ++ LP +V + +++ +GV
Sbjct: 49 KIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYE-NGV 107
Query: 93 LTITAPKR 100
LTI P
Sbjct: 108 LTIRIPIA 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.003
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 12/94 (12%)
Query: 46 GFI--LVEGKHEEKEDEH-GFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTL 102
G++ LVE + D+ +F+ YL D I + + L + T+ K +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND--IHALAAKLLQENDTTLVKTKELI 123
Query: 103 Q-----DKTTERPVPIVQTGVPALKPQAPSSNSS 131
+ +RP + AL N+
Sbjct: 124 KNYITARIMAKRPFD--KKSNSALFRAVGEGNAQ 155
Score = 30.4 bits (68), Expect = 0.19
Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 36/131 (27%)
Query: 1 MLGVIF----KKQQRNPPKIRKPRALTLPFCIPSFLGAPSHEISIK-----TVDGFILVE 51
+ V+F + + P P L + + G PS +SI V ++
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILED--SLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 52 GKHEEKEDEHGFIS-----RQF---------------KRRYLLPKDVEIEKVTSS----L 87
H + IS + R+ P ++ ++ S
Sbjct: 357 NSHL-PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 88 SSDGVLTITAP 98
S+ L + +P
Sbjct: 416 FSNRFLPVASP 426
Score = 26.9 bits (59), Expect = 2.8
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 8/31 (25%)
Query: 9 QQRNPPKIRKPRALTLPFCIPSFL--GAPSH 37
Q R P RK + FL +P H
Sbjct: 404 QSRIPFSERKLKFSN------RFLPVASPFH 428
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.010
Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 30/112 (26%)
Query: 13 PPKIRKPRALTLPFCIPSFLGAPSHEISIKTVDGFILVEGKHEEKEDEHGFISR------ 66
P ++ T P + S + + + T D + KH + I
Sbjct: 319 PREVLT----TNPRRL-SIIAESIRD-GLATWDNW-----KHVNCDKLTTIIESSLNVLE 367
Query: 67 --QFKRRY----LLPKDVEI-EKVTSSL----SSDGVLTITAP--KRTLQDK 105
++++ + + P I + S + V+ + K +L +K
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Score = 29.1 bits (64), Expect = 0.61
Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 45/156 (28%)
Query: 1 MLG---------VI--FKKQQRNPPKI--------RKPRALTLP---FCI---PSFLGAP 35
+LG V +K Q + KI P + P++
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 36 SHEISIKTVDGFILVEGKHEEK-EDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDG--- 91
H +IK H + E S+ ++ L+ +V+ K ++ +
Sbjct: 218 DHSSNIK--------LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSCK 267
Query: 92 VLTITAPKRTLQDKTTERPVPIVQTGVPALKPQAPS 127
+L T + K + T +L + +
Sbjct: 268 ILLTT------RFKQVTDFLSAATTTHISLDHHSMT 297
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.77
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 9/33 (27%)
Query: 79 EIEKVTSSL---SSDGVLTITAPKRTLQDKTTE 108
++K+ +SL + D +AP ++ T E
Sbjct: 21 ALKKLQASLKLYADD-----SAPALAIK-ATME 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.375
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,067,197
Number of extensions: 110679
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 22
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.3 bits)