RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4755
         (147 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 44.8 bits (105), Expect = 3e-07
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 10/89 (11%)

Query: 33  GAPSHEISIKTVDGFILVEGKHEEKEDEH--------GFISRQFKRRYLLPKDVEIEKVT 84
           G    E+ ++  DG +LV      KE E            S +F RR+ L +D ++E+V 
Sbjct: 62  GVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVK 121

Query: 85  SSLSSDGVLTITAPKRTLQDKTTERPVPI 113
           + L  +GVLT+T PK     K   + + I
Sbjct: 122 AGLE-NGVLTVTVPKAE-VKKPEVKAIQI 148


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 41.2 bits (96), Expect = 5e-06
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 12/89 (13%)

Query: 33  GAPSHEISIKTVDGFILVEGKHEEKEDE--------HGFISRQFKRRYLLPKDVEIEKVT 84
           G    +I +  V   + +  K                     +  R   LP  V+ E  +
Sbjct: 30  GVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENAS 89

Query: 85  SSLSSDGVLTITAPKRTLQDKTTERPVPI 113
           +    +GVL++  PK    + + ++ + I
Sbjct: 90  AKFE-NGVLSVILPKA---ESSIKKGINI 114


>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
          [TaxId: 9615]}
          Length = 377

 Score = 25.8 bits (55), Expect = 2.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 28 IPSFLGAPSHEISIKTVDGFIL 49
          + ++ G P+ E  + T DG+IL
Sbjct: 19 MITYWGYPAEEYEVVTEDGYIL 40


>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID
           subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 97

 Score = 23.6 bits (51), Expect = 5.7
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 90  DGVLTITAPKRTLQDKTTERP----VPIVQTGVPALKPQAPSSNSSTQQSQ 136
           DG +        L  +    P    VP ++  +PAL+   P S +  QQSQ
Sbjct: 47  DGKIEAEDFTSRLYRELNSSPQPYLVPFLKRSLPALRQLTPDSAAFIQQSQ 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 507,678
Number of extensions: 21667
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 8
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (22.9 bits)