BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4756
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KLR|A Chain A, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
In Alphab- Crystallin Oligomers
pdb|2KLR|B Chain B, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
In Alphab- Crystallin Oligomers
pdb|2YGD|A Chain A, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|B Chain B, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|C Chain C, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|D Chain D, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|E Chain E, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|F Chain F, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|G Chain G, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|H Chain H, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|I Chain I, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|J Chain J, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|K Chain K, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|L Chain L, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|M Chain M, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|N Chain N, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|O Chain O, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|P Chain P, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|Q Chain Q, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|R Chain R, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|S Chain S, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|T Chain T, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|U Chain U, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|V Chain V, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|W Chain W, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|X Chain X, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
Length = 175
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 13 YLDKAEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLPKDVEIEKVTSSLSSDGV 72
+ E+ +K + I V FISR+F R+Y +P DV+ +TSSLSSDGV
Sbjct: 83 HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGV 142
Query: 73 LTITAPKRTLQDKTTERPVPIVQTGVPAL 101
LT+ P++ Q ER +PI + PA+
Sbjct: 143 LTVNGPRK--QVSGPERTIPITREEKPAV 169
>pdb|3L1G|A Chain A, Human Alphab Crystallin
Length = 96
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 13 YLDKAEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLPKDVEIEKVTSSLSSDGV 72
+ E+ +K + I V FISR+F R+Y +P DV+ +TSSLSSDGV
Sbjct: 17 HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGV 76
Query: 73 LTITAPKRTLQDKTTERPVPI 93
LT+ P++ Q ER +PI
Sbjct: 77 LTVNGPRK--QVSGPERTIPI 95
>pdb|3N3E|A Chain A, Zebrafish Alphaa Crystallin
pdb|3N3E|B Chain B, Zebrafish Alphaa Crystallin
Length = 106
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 18 EISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 77
E+S+K D ++ + +ISR+F RRY LP +V+ +T +LS+DG+LT+
Sbjct: 25 ELSVKVTDDYVEIQGKHGERQDDHGYISREFHRRYRLPSNVDQSAITCTLSADGLLTLCG 84
Query: 78 PKRTLQDKT-TERPVPIVQ 95
PK + D +R +P+ +
Sbjct: 85 PKTSGIDAGRGDRTIPVTR 103
>pdb|2WJ7|A Chain A, Human Alphab Crystallin
pdb|2WJ7|B Chain B, Human Alphab Crystallin
pdb|2WJ7|C Chain C, Human Alphab Crystallin
pdb|2WJ7|D Chain D, Human Alphab Crystallin
pdb|2WJ7|E Chain E, Human Alphab Crystallin
Length = 94
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 13 YLDKAEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLPKDVEIEKVTSSLSSDGV 72
+ E+ +K + I V FISR+F R+Y +P DV+ +TSSLSSDGV
Sbjct: 20 HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGV 79
Query: 73 LTITAPKRTL 82
LT+ P++ +
Sbjct: 80 LTVNGPRKQV 89
>pdb|3L1E|A Chain A, Bovine Alphaa Crystallin Zinc Bound
Length = 106
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 13 YLDKAEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLPKDVEIEKVTSSLSSDGV 72
+ ++++K + F+ + +ISR+F RRY LP +V+ ++ SLS+DG+
Sbjct: 22 HFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGM 81
Query: 73 LTITAPK--RTLQDKTTERPVPI 93
LT + PK + +ER +P+
Sbjct: 82 LTFSGPKIPSGVDAGHSERAIPV 104
>pdb|3L1F|A Chain A, Bovine Alphaa Crystallin
Length = 103
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 13 YLDKAEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLPKDVEIEKVTSSLSSDGV 72
+ ++++K + F+ + +ISR+F RRY LP +V+ ++ SLS+DG+
Sbjct: 19 HFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGM 78
Query: 73 LTITAPK--RTLQDKTTERPVPI 93
LT + PK + +ER +P+
Sbjct: 79 LTFSGPKIPSGVDAGHSERAIPV 101
>pdb|2Y22|A Chain A, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|B Chain B, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|C Chain C, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|D Chain D, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|E Chain E, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|F Chain F, Human Alphab-Crystallin Domain (Residues 67-157)
Length = 94
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 13 YLDKAEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLPKDVEIEKVTSSLSSDGV 72
+ E+ +K + I V FISR+F R+Y +P DV+ +TSS SSDGV
Sbjct: 20 HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSXSSDGV 79
Query: 73 LTITAPKRTL 82
LT+ P++ +
Sbjct: 80 LTVNGPRKQV 89
>pdb|2Y1Y|A Chain A, Human Alphab Crystallin Acd(Residues 71-157)
Length = 90
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 13 YLDKAEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLPKDVEIEKVTSSLSSDGV 72
+ E+ +K + I V FISR+F R+Y +P DV+ +TSS SSDGV
Sbjct: 16 HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSXSSDGV 75
Query: 73 LTITAPKRTL 82
LT+ P++ +
Sbjct: 76 LTVNGPRKQV 85
>pdb|2WJ5|A Chain A, Rat Alpha Crystallin Domain
Length = 101
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%)
Query: 13 YLDKAEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLPKDVEIEKVTSSLSSDGV 72
+ EIS+K V + V FI+R+F RRY LP V+ VTS+LS +GV
Sbjct: 21 HFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGV 80
Query: 73 LTITAPKRTLQDKTTERPV 91
L+I A + Q P
Sbjct: 81 LSIQATPASAQASLPSPPA 99
>pdb|2Y1Z|A Chain A, Human Alphab Crystallin Acd R120g
pdb|2Y1Z|B Chain B, Human Alphab Crystallin Acd R120g
Length = 94
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 13 YLDKAEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLPKDVEIEKVTSSLSSDGV 72
+ E+ +K + I V FISR+F +Y +P DV+ +TSS+SSDGV
Sbjct: 20 HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHGKYRIPADVDPLTITSSMSSDGV 79
Query: 73 LTITAPKRTL 82
LT+ P++ +
Sbjct: 80 LTVNGPRKQV 89
>pdb|3Q9P|A Chain A, Hspb1 Fragment
pdb|3Q9Q|A Chain A, Hspb1 Fragment Second Crystal Form
pdb|3Q9Q|B Chain B, Hspb1 Fragment Second Crystal Form
Length = 85
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 18 EISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 77
E+++KT DG + + +ISR F R+Y LP V+ +V+SSLS +G LT+ A
Sbjct: 22 ELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEA 81
Query: 78 P 78
P
Sbjct: 82 P 82
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
Length = 101
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 45 SRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTLQ 83
S +F RR+ L +D ++E+V + L +GVLT+T PK +Q
Sbjct: 61 SGKFVRRFRLLEDAKVEEVKAGLE-NGVLTVTVPKAAIQ 98
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 48 FKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTLQDKTTER 89
+ R L KD++ + + SDG LTI+ ++ + T ++
Sbjct: 16 LQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQ 57
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 48 FKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTLQDKTTER 89
+ R L KD++ + + SDG LTI+ ++ + T ++
Sbjct: 10 LQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQ 51
>pdb|2P1H|A Chain A, Rapid Folding And Unfolding Of Apaf-1 Card
Length = 94
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 48 FKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTLQDKTTERPVPIV 94
+ R L KD++ + + SDG LTI+ ++ + T ++ ++
Sbjct: 12 LQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAML 58
>pdb|2YGS|A Chain A, Card Domain From Apaf-1
Length = 92
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 48 FKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTLQDKTTERPVPIV 94
+ R L KD++ + + SDG LTI+ ++ + T ++ ++
Sbjct: 10 LQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAML 56
>pdb|3YGS|C Chain C, Apaf-1 Card In Complex With Prodomain Of Procaspase-9
Length = 95
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 48 FKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTLQDKTTERPVPIV 94
+ R L KD++ + + SDG LTI+ ++ + T ++ ++
Sbjct: 10 LQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAML 56
>pdb|1CY5|A Chain A, Crystal Structure Of The Apaf-1 Card
pdb|1C15|A Chain A, Solution Structure Of Apaf-1 Card
Length = 97
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 48 FKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTLQDKTTERPVPIV 94
+ R L KD++ + + SDG LTI+ ++ + T ++ ++
Sbjct: 10 LQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAML 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,289,675
Number of Sequences: 62578
Number of extensions: 61120
Number of successful extensions: 131
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 19
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)