Query psy4756
Match_columns 125
No_of_seqs 107 out of 1034
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 16:53:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06498 ACD_alphaB-crystallin_ 99.9 1.2E-22 2.7E-27 135.4 9.5 73 8-80 12-84 (84)
2 cd06476 ACD_HspB2_like Alpha c 99.9 1.5E-22 3.3E-27 134.7 9.9 72 8-79 12-83 (83)
3 KOG3591|consensus 99.9 3E-22 6.5E-27 149.6 12.2 94 8-102 77-170 (173)
4 cd06497 ACD_alphaA-crystallin_ 99.9 2.5E-22 5.5E-27 134.3 10.3 77 3-79 6-86 (86)
5 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 4.1E-22 9E-27 132.4 10.5 77 3-79 3-83 (83)
6 cd06477 ACD_HspB3_Like Alpha c 99.9 2.2E-21 4.8E-26 129.3 9.8 71 8-78 12-82 (83)
7 cd06480 ACD_HspB8_like Alpha-c 99.9 2.4E-21 5.1E-26 131.3 9.6 72 8-79 20-91 (91)
8 PF00011 HSP20: Hsp20/alpha cr 99.8 8.2E-20 1.8E-24 123.8 12.9 91 3-94 3-102 (102)
9 cd06475 ACD_HspB1_like Alpha c 99.8 2.3E-20 4.9E-25 124.9 9.8 78 2-79 5-86 (86)
10 PRK10743 heat shock protein Ib 99.8 2.7E-20 5.8E-25 134.4 10.8 86 5-94 43-137 (137)
11 cd06526 metazoan_ACD Alpha-cry 99.8 2.2E-20 4.8E-25 123.4 9.1 71 8-79 12-83 (83)
12 PRK11597 heat shock chaperone 99.8 4E-20 8.7E-25 134.3 11.3 84 8-95 48-136 (142)
13 cd06481 ACD_HspB9_like Alpha c 99.8 2.8E-20 6E-25 124.7 8.9 72 8-79 12-87 (87)
14 COG0071 IbpA Molecular chapero 99.8 1.4E-19 3E-24 131.1 11.6 91 2-94 45-146 (146)
15 cd06479 ACD_HspB7_like Alpha c 99.8 9.2E-20 2E-24 121.0 9.2 74 3-79 4-81 (81)
16 cd06482 ACD_HspB10 Alpha cryst 99.8 8.5E-19 1.8E-23 117.8 9.1 72 8-79 13-87 (87)
17 cd06472 ACD_ScHsp26_like Alpha 99.8 1.8E-18 4E-23 116.1 10.0 77 2-79 4-92 (92)
18 cd06471 ACD_LpsHSP_like Group 99.7 2.2E-17 4.7E-22 110.8 9.6 76 2-79 5-93 (93)
19 cd06470 ACD_IbpA-B_like Alpha- 99.7 1.1E-16 2.4E-21 107.4 10.3 75 2-79 5-90 (90)
20 cd06464 ACD_sHsps-like Alpha-c 99.7 1.2E-16 2.6E-21 104.2 8.1 76 3-79 3-88 (88)
21 cd00298 ACD_sHsps_p23-like Thi 99.4 3.7E-12 8E-17 79.7 8.2 69 9-79 12-80 (80)
22 KOG0710|consensus 99.3 2.2E-12 4.8E-17 98.0 5.5 85 8-93 99-194 (196)
23 cd06469 p23_DYX1C1_like p23_li 99.0 3.5E-09 7.6E-14 68.1 7.6 60 9-82 12-71 (78)
24 cd06463 p23_like Proteins cont 98.5 8.2E-07 1.8E-11 56.5 7.5 65 9-82 12-76 (84)
25 PF05455 GvpH: GvpH; InterPro 98.2 5.8E-06 1.3E-10 62.1 7.4 62 10-83 109-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 97.9 4.6E-05 9.9E-10 49.2 6.6 65 9-82 13-77 (84)
27 PF08190 PIH1: pre-RNA process 97.4 0.00095 2.1E-08 53.2 7.9 60 8-78 266-327 (328)
28 PF04969 CS: CS domain; Inter 97.2 0.0079 1.7E-07 37.6 9.2 67 4-79 7-79 (79)
29 cd06489 p23_CS_hSgt1_like p23_ 96.5 0.021 4.6E-07 37.0 7.2 64 9-81 13-76 (84)
30 cd06465 p23_hB-ind1_like p23_l 96.2 0.057 1.2E-06 36.7 8.3 62 10-81 17-78 (108)
31 cd06467 p23_NUDC_like p23_like 96.1 0.041 8.9E-07 35.4 6.8 67 4-82 5-77 (85)
32 cd06493 p23_NUDCD1_like p23_NU 95.3 0.23 5.1E-06 32.3 8.1 67 4-82 5-77 (85)
33 cd06468 p23_CacyBP p23_like do 95.1 0.25 5.4E-06 32.3 8.0 64 10-82 18-85 (92)
34 cd06488 p23_melusin_like p23_l 94.3 0.49 1.1E-05 31.0 7.9 64 10-82 17-80 (87)
35 cd06494 p23_NUDCD2_like p23-li 93.8 0.54 1.2E-05 31.6 7.4 66 4-82 12-83 (93)
36 cd00237 p23 p23 binds heat sho 86.8 7.9 0.00017 26.5 8.5 63 9-82 17-79 (106)
37 cd06492 p23_mNUDC_like p23-lik 86.2 7.4 0.00016 25.5 7.8 56 14-81 22-78 (87)
38 PLN03088 SGT1, suppressor of 83.7 5.7 0.00012 32.4 7.2 64 10-82 173-236 (356)
39 cd06482 ACD_HspB10 Alpha cryst 82.6 2.3 5.1E-05 28.2 3.7 34 47-82 9-42 (87)
40 cd06478 ACD_HspB4-5-6 Alpha-cr 78.3 4.7 0.0001 26.2 4.0 32 47-80 8-39 (83)
41 PRK10743 heat shock protein Ib 77.3 8.2 0.00018 27.7 5.4 34 47-82 46-79 (137)
42 cd06479 ACD_HspB7_like Alpha c 75.7 5.6 0.00012 25.9 3.9 33 47-81 9-41 (81)
43 cd06470 ACD_IbpA-B_like Alpha- 74.2 6.7 0.00014 25.6 4.0 35 47-83 12-46 (90)
44 cd06526 metazoan_ACD Alpha-cry 72.7 6.8 0.00015 25.1 3.7 34 47-82 8-41 (83)
45 cd06471 ACD_LpsHSP_like Group 72.6 6.9 0.00015 25.4 3.8 33 47-81 11-43 (93)
46 PRK11597 heat shock chaperone 70.4 14 0.00031 26.7 5.3 33 47-81 44-76 (142)
47 cd06495 p23_NUDCD3_like p23-li 70.0 32 0.00069 23.4 7.8 69 4-81 11-86 (102)
48 PF00011 HSP20: Hsp20/alpha cr 69.2 11 0.00024 24.6 4.2 32 47-80 8-39 (102)
49 PF13349 DUF4097: Domain of un 68.0 39 0.00084 23.6 7.3 59 18-77 86-148 (166)
50 PF14913 DPCD: DPCD protein fa 67.6 20 0.00043 27.5 5.7 33 48-81 132-170 (194)
51 PF04972 BON: BON domain; Int 67.5 13 0.00027 22.3 3.9 24 12-35 12-35 (64)
52 PF08845 SymE_toxin: Toxin Sym 65.5 6.2 0.00013 24.3 2.2 27 5-31 29-56 (57)
53 PF00347 Ribosomal_L6: Ribosom 55.5 23 0.00051 21.9 3.7 46 16-78 2-47 (77)
54 cd06476 ACD_HspB2_like Alpha c 54.6 23 0.0005 23.0 3.6 33 47-81 8-40 (83)
55 cd06477 ACD_HspB3_Like Alpha c 53.4 25 0.00054 22.9 3.6 33 47-81 8-40 (83)
56 PRK05518 rpl6p 50S ribosomal p 50.0 69 0.0015 24.1 6.0 19 16-34 13-31 (180)
57 TIGR03653 arch_L6P archaeal ri 48.4 91 0.002 23.1 6.4 45 16-78 7-51 (170)
58 PF07873 YabP: YabP family; I 47.8 17 0.00038 22.5 2.1 23 12-34 21-43 (66)
59 KOG1309|consensus 47.3 56 0.0012 25.0 5.1 65 8-81 18-82 (196)
60 PTZ00027 60S ribosomal protein 46.0 84 0.0018 23.8 5.9 47 16-78 13-59 (190)
61 CHL00140 rpl6 ribosomal protei 45.3 94 0.002 23.1 6.1 19 16-34 12-30 (178)
62 cd06467 p23_NUDC_like p23_like 42.6 73 0.0016 19.8 4.5 31 47-78 9-39 (85)
63 cd06494 p23_NUDCD2_like p23-li 40.0 48 0.001 22.1 3.4 30 47-77 16-45 (93)
64 TIGR02856 spore_yqfC sporulati 39.7 25 0.00054 23.2 2.0 23 12-34 39-61 (85)
65 PRK11198 LysM domain/BON super 39.7 47 0.001 23.8 3.6 25 12-36 38-62 (147)
66 TIGR02892 spore_yabP sporulati 36.8 32 0.0007 22.8 2.2 24 11-34 19-42 (85)
67 KOG3413|consensus 36.0 19 0.00042 26.6 1.1 23 56-79 67-89 (156)
68 cd06490 p23_NCB5OR p23_like do 33.6 1.3E+02 0.0029 19.3 9.1 69 4-82 5-80 (87)
69 cd00503 Frataxin Frataxin is a 33.2 48 0.001 22.6 2.6 17 61-78 28-44 (105)
70 KOG2265|consensus 32.1 1.9E+02 0.0041 22.0 5.8 59 12-82 38-97 (179)
71 PF05309 TraE: TraE protein; 31.8 2E+02 0.0044 21.1 6.1 54 12-77 126-179 (187)
72 PF01491 Frataxin_Cyay: Fratax 31.2 47 0.001 22.7 2.4 18 61-79 30-47 (109)
73 PTZ00179 60S ribosomal protein 30.4 51 0.0011 24.9 2.6 19 16-34 12-30 (189)
74 TIGR03654 L6_bact ribosomal pr 30.3 55 0.0012 24.3 2.7 18 16-33 11-28 (175)
75 TIGR03421 FeS_CyaY iron donor 30.0 57 0.0012 22.2 2.6 17 62-79 26-42 (102)
76 PRK05498 rplF 50S ribosomal pr 29.9 55 0.0012 24.3 2.7 18 16-33 12-29 (178)
77 PRK00446 cyaY frataxin-like pr 29.8 53 0.0011 22.5 2.4 16 63-79 29-44 (105)
78 cd02178 GH16_beta_agarase Beta 29.7 1.8E+02 0.0038 22.5 5.7 37 21-57 60-110 (258)
79 COG4004 Uncharacterized protei 29.3 94 0.002 21.2 3.5 30 2-33 28-59 (96)
80 PF01954 DUF104: Protein of un 28.7 41 0.00088 20.8 1.5 32 61-95 3-34 (60)
81 KOG3158|consensus 27.3 1.7E+02 0.0038 22.1 4.9 60 15-83 27-86 (180)
82 PF13285 DUF4073: Domain of un 26.8 2E+02 0.0043 21.3 5.0 86 16-102 51-147 (158)
83 KOG2702|consensus 26.0 22 0.00048 28.7 -0.0 55 5-59 208-270 (323)
84 cd02175 GH16_lichenase lichena 24.5 2.6E+02 0.0055 20.8 5.5 42 14-57 29-80 (212)
85 KOG1667|consensus 24.5 3.7E+02 0.0081 21.9 6.6 64 12-83 233-296 (320)
86 TIGR03422 mito_frataxin fratax 24.2 65 0.0014 21.8 2.0 15 64-79 30-44 (97)
87 PRK13605 endoribonuclease SymE 23.5 80 0.0017 22.2 2.4 30 6-35 44-74 (113)
88 PRK10568 periplasmic protein; 22.1 1.5E+02 0.0033 22.3 3.9 24 12-35 73-96 (203)
No 1
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.89 E-value=1.2e-22 Score=135.37 Aligned_cols=73 Identities=47% Similarity=0.808 Sum_probs=65.8
Q ss_pred eEEecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCc
Q psy4756 8 RGTKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKR 80 (125)
Q Consensus 8 ~ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~ 80 (125)
.+|+|||+|+||+|.++++.|+|+|++....+..+|+.++|.|+|.||.+||.++|+|+|++||+|+|++||+
T Consensus 12 ~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk~ 84 (84)
T cd06498 12 NLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPRK 84 (84)
T ss_pred EEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeCC
Confidence 3456999999999999999999999987655566788899999999999999999999994499999999985
No 2
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.89 E-value=1.5e-22 Score=134.75 Aligned_cols=72 Identities=42% Similarity=0.699 Sum_probs=65.8
Q ss_pred eEEecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeC
Q psy4756 8 RGTKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPK 79 (125)
Q Consensus 8 ~ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk 79 (125)
.+|+|||+|+||+|++.++.|+|+|++....+..+++.++|.|+|.||.+||.++|+|+|+.||+|+|++||
T Consensus 12 ~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 12 FLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred EEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 467899999999999999999999998766556678899999999999999999999999559999999997
No 3
>KOG3591|consensus
Probab=99.88 E-value=3e-22 Score=149.57 Aligned_cols=94 Identities=53% Similarity=0.775 Sum_probs=87.3
Q ss_pred eEEecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcCCCCCCC
Q psy4756 8 RGTKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTLQDKTT 87 (125)
Q Consensus 8 ~ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~~~~~~ 87 (125)
.|||..|+|++|+|++.++.|.|+|+|+++.++.|++.|+|.|+|.||.+||++.|+|+|+.||+|+|++|+...... .
T Consensus 77 ~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~-~ 155 (173)
T KOG3591|consen 77 NLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQD-N 155 (173)
T ss_pred EEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCCCcCc-c
Confidence 478899999999999999999999999999889999999999999999999999999999999999999999987642 5
Q ss_pred CeEEeeeeCCCCCCC
Q psy4756 88 ERPVPIVQTGVPALK 102 (125)
Q Consensus 88 ~r~I~I~~~~~~a~~ 102 (125)
.|.|+|.+.+..+.+
T Consensus 156 er~ipI~~~~~~~~~ 170 (173)
T KOG3591|consen 156 ERSIPIEQVGPSALS 170 (173)
T ss_pred ceEEeEeecCccccc
Confidence 899999999987664
No 4
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.88 E-value=2.5e-22 Score=134.34 Aligned_cols=77 Identities=39% Similarity=0.772 Sum_probs=68.2
Q ss_pred eecCce----EEecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEe
Q psy4756 3 RETGQR----GTKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 78 (125)
Q Consensus 3 ~e~~~~----ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lP 78 (125)
.|+++. +++|||+++||+|+++++.|+|+|++....++.+|+.++|.|+|.||.+||.++|+|+|++||+|+|++|
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 85 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence 455554 4569999999999999999999999866555667988999999999999999999999967999999999
Q ss_pred C
Q psy4756 79 K 79 (125)
Q Consensus 79 k 79 (125)
|
T Consensus 86 K 86 (86)
T cd06497 86 K 86 (86)
T ss_pred C
Confidence 7
No 5
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.88 E-value=4.1e-22 Score=132.38 Aligned_cols=77 Identities=49% Similarity=0.801 Sum_probs=67.6
Q ss_pred eecCce----EEecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEe
Q psy4756 3 RETGQR----GTKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 78 (125)
Q Consensus 3 ~e~~~~----ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lP 78 (125)
.++++. +|+|||+++||+|+++++.|+|+|++....++.+|+.|.|.|+|.||.+||.++|+|+|++||+|+|++|
T Consensus 3 ~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 3 RLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred eecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence 445554 4569999999999999999999999876555567888999999999999999999999956999999999
Q ss_pred C
Q psy4756 79 K 79 (125)
Q Consensus 79 k 79 (125)
|
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 7
No 6
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.86 E-value=2.2e-21 Score=129.34 Aligned_cols=71 Identities=35% Similarity=0.667 Sum_probs=64.1
Q ss_pred eEEecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEe
Q psy4756 8 RGTKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 78 (125)
Q Consensus 8 ~ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lP 78 (125)
.+++|||+|+||+|.++++.|+|+|++....++.++++|+|.|+|.||.+|+.++|+|.|++||+|+|+++
T Consensus 12 ~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 12 LLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred EEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 35679999999999999999999999876545567888999999999999999999999867999999986
No 7
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.86 E-value=2.4e-21 Score=131.26 Aligned_cols=72 Identities=39% Similarity=0.649 Sum_probs=67.1
Q ss_pred eEEecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeC
Q psy4756 8 RGTKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPK 79 (125)
Q Consensus 8 ~ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk 79 (125)
.+||.||+||||+|++.++.|+|+|+++.+.++.|++.|+|.|+|.||.+||.+.|+|.|++||+|+|++|.
T Consensus 20 ~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP~ 91 (91)
T cd06480 20 CVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAPQ 91 (91)
T ss_pred EEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEcCC
Confidence 478999999999999999999999999876666689999999999999999999999999779999999984
No 8
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.84 E-value=8.2e-20 Score=123.78 Aligned_cols=91 Identities=32% Similarity=0.554 Sum_probs=70.1
Q ss_pred eecCceEE----ecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEE-----EEEEEEEECCCCCccCCcEEEeCCCCEE
Q psy4756 3 RETGQRGT----KYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFIS-----RQFKRRYLLPKDVEIEKVTSSLSSDGVL 73 (125)
Q Consensus 3 ~e~~~~ld----vpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~-----r~f~R~~~LP~~vd~d~i~A~~~~nGvL 73 (125)
.|+++.+. +|||.++||+|+++++.|+|+|++........++. +.|.|+|.||.++|.++|+|.| +||+|
T Consensus 3 ~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~-~~GvL 81 (102)
T PF00011_consen 3 KEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASY-ENGVL 81 (102)
T ss_dssp EESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEE-TTSEE
T ss_pred EECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEe-cCCEE
Confidence 45666554 59999999999999999999999883333333433 4899999999999999999999 89999
Q ss_pred EEEEeCcCCCCCCCCeEEeee
Q psy4756 74 TITAPKRTLQDKTTERPVPIV 94 (125)
Q Consensus 74 ~I~lPk~~~~~~~~~r~I~I~ 94 (125)
+|++||........+++|+|+
T Consensus 82 ~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 82 TITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEEEEBSSSCTTSSSCEE-ET
T ss_pred EEEEEccccccCCCCeEEEeC
Confidence 999999998853468999984
No 9
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.84 E-value=2.3e-20 Score=124.88 Aligned_cols=78 Identities=50% Similarity=0.786 Sum_probs=67.4
Q ss_pred ceecCceE----EecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEE
Q psy4756 2 LRETGQRG----TKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 77 (125)
Q Consensus 2 ~~e~~~~l----dvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~l 77 (125)
++|+.+.+ ++|||+++||+|.++++.|+|+|++....+..++..++|.|+|.||.+||.++|+|.|.+||+|+|++
T Consensus 5 i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~l 84 (86)
T cd06475 5 IRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVEA 84 (86)
T ss_pred EEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEEe
Confidence 35566554 45999999999999999999999987655556788899999999999999999999993399999999
Q ss_pred eC
Q psy4756 78 PK 79 (125)
Q Consensus 78 Pk 79 (125)
|-
T Consensus 85 P~ 86 (86)
T cd06475 85 PI 86 (86)
T ss_pred cC
Confidence 83
No 10
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.84 E-value=2.7e-20 Score=134.38 Aligned_cols=86 Identities=20% Similarity=0.435 Sum_probs=69.7
Q ss_pred cCceE----EecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEE-----EEEEEEEECCCCCccCCcEEEeCCCCEEEE
Q psy4756 5 TGQRG----TKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFIS-----RQFKRRYLLPKDVEIEKVTSSLSSDGVLTI 75 (125)
Q Consensus 5 ~~~~l----dvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~-----r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I 75 (125)
+++.+ ++|||+++||+|.++++.|+|+|++....++.+|.+ ++|.|+|.||.+||.+ +|+| +||||+|
T Consensus 43 ~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A~~-~dGVL~I 119 (137)
T PRK10743 43 DENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR--GANL-VNGLLYI 119 (137)
T ss_pred CCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC--cCEE-eCCEEEE
Confidence 55544 459999999999999999999998765443444543 3899999999999999 4999 8999999
Q ss_pred EEeCcCCCCCCCCeEEeee
Q psy4756 76 TAPKRTLQDKTTERPVPIV 94 (125)
Q Consensus 76 ~lPk~~~~~~~~~r~I~I~ 94 (125)
++||..++. ..+|+|+|+
T Consensus 120 ~lPK~~~~~-~~~r~I~I~ 137 (137)
T PRK10743 120 DLERVIPEA-KKPRRIEIN 137 (137)
T ss_pred EEeCCCccc-cCCeEEeeC
Confidence 999974432 368999984
No 11
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.84 E-value=2.2e-20 Score=123.43 Aligned_cols=71 Identities=54% Similarity=0.818 Sum_probs=64.1
Q ss_pred eEEecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCC-CEEEEEEeC
Q psy4756 8 RGTKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSD-GVLTITAPK 79 (125)
Q Consensus 8 ~ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~n-GvL~I~lPk 79 (125)
.+|+|||+++||+|.++++.|+|+|++....+..++.+++|.|+|.||.+||.++++|+| .| |+|+|++||
T Consensus 12 ~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~-~~~GvL~I~~Pk 83 (83)
T cd06526 12 TLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSL-SSDGVLTIEAPK 83 (83)
T ss_pred EEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEe-CCCcEEEEEecC
Confidence 467899999999999999999999998765444567889999999999999999999999 56 999999997
No 12
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.84 E-value=4e-20 Score=134.26 Aligned_cols=84 Identities=15% Similarity=0.301 Sum_probs=69.1
Q ss_pred eEEecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEE-----EEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcCC
Q psy4756 8 RGTKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISR-----QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTL 82 (125)
Q Consensus 8 ~ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r-----~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~ 82 (125)
++++|||+++||+|.++++.|+|+|++.....+.+|+++ +|.|+|.||.+||.+ +|+| +||||+|++||..+
T Consensus 48 ~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~-~nGVL~I~lPK~~~ 124 (142)
T PRK11597 48 TLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATF-VNGLLHIDLIRNEP 124 (142)
T ss_pred EEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEE-cCCEEEEEEeccCc
Confidence 355699999999999999999999987544334445543 799999999999998 7999 89999999999743
Q ss_pred CCCCCCeEEeeee
Q psy4756 83 QDKTTERPVPIVQ 95 (125)
Q Consensus 83 ~~~~~~r~I~I~~ 95 (125)
+. .++|+|+|+.
T Consensus 125 ~~-~~~rkI~I~~ 136 (142)
T PRK11597 125 EA-IAPQRIAISE 136 (142)
T ss_pred cc-cCCcEEEECC
Confidence 32 3689999973
No 13
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.83 E-value=2.8e-20 Score=124.70 Aligned_cols=72 Identities=33% Similarity=0.480 Sum_probs=62.0
Q ss_pred eEEecCcCCCCeEEEEECCEEEEEEEEceee-C-CCce--EEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeC
Q psy4756 8 RGTKYYLDKAEISIKTVDGFILVEGKHEEKE-D-EHGF--ISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPK 79 (125)
Q Consensus 8 ~ldvpGf~~edI~V~v~~~~L~I~g~~~~~~-~-~~~~--~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk 79 (125)
.+|+|||+++||+|.++++.|+|+|++.... + ...| .+++|.|+|.||.+||.++|+|.|++||+|+|++|+
T Consensus 12 ~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P~ 87 (87)
T cd06481 12 KLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRAPR 87 (87)
T ss_pred EEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEEcCC
Confidence 4678999999999999999999999876542 1 1233 346999999999999999999999889999999996
No 14
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.4e-19 Score=131.11 Aligned_cols=91 Identities=27% Similarity=0.514 Sum_probs=75.8
Q ss_pred ceecCceEE----ecCcCCCCeEEEEECCEEEEEEEEcee--eCCCceEE-----EEEEEEEECCCCCccCCcEEEeCCC
Q psy4756 2 LRETGQRGT----KYYLDKAEISIKTVDGFILVEGKHEEK--EDEHGFIS-----RQFKRRYLLPKDVEIEKVTSSLSSD 70 (125)
Q Consensus 2 ~~e~~~~ld----vpGf~~edI~V~v~~~~L~I~g~~~~~--~~~~~~~~-----r~f~R~~~LP~~vd~d~i~A~~~~n 70 (125)
+.|+|+++. +|||+++||+|.++++.|+|+|++... .+..++++ +.|+|+|.||..|+.+.++|+| +|
T Consensus 45 i~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~-~n 123 (146)
T COG0071 45 IEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKY-KN 123 (146)
T ss_pred EEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEe-eC
Confidence 467777765 499999999999999999999998752 23444543 4899999999999999999999 89
Q ss_pred CEEEEEEeCcCCCCCCCCeEEeee
Q psy4756 71 GVLTITAPKRTLQDKTTERPVPIV 94 (125)
Q Consensus 71 GvL~I~lPk~~~~~~~~~r~I~I~ 94 (125)
|+|+|++||..+.. .+.++|.|+
T Consensus 124 GvL~I~lpk~~~~~-~~~~~i~I~ 146 (146)
T COG0071 124 GLLTVTLPKAEPEE-KKPKRIEIE 146 (146)
T ss_pred cEEEEEEecccccc-ccCceeecC
Confidence 99999999998763 357778774
No 15
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.82 E-value=9.2e-20 Score=120.99 Aligned_cols=74 Identities=28% Similarity=0.419 Sum_probs=63.5
Q ss_pred eecCceE----EecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEe
Q psy4756 3 RETGQRG----TKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 78 (125)
Q Consensus 3 ~e~~~~l----dvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lP 78 (125)
+|+++.+ |+|||+|+||+|+++++.|+|+|++.... +..+++|.|+|.||.+||.++|+|+|++||+|+|+++
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~---~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~ 80 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASD---GTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKAR 80 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccC---CCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEec
Confidence 5566654 56999999999999999999999875422 3456899999999999999999999768999999998
Q ss_pred C
Q psy4756 79 K 79 (125)
Q Consensus 79 k 79 (125)
+
T Consensus 81 ~ 81 (81)
T cd06479 81 R 81 (81)
T ss_pred C
Confidence 6
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.79 E-value=8.5e-19 Score=117.82 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=61.1
Q ss_pred eEEecCcCCCCeEEEEECCEEEEEEEEceeeCC---CceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeC
Q psy4756 8 RGTKYYLDKAEISIKTVDGFILVEGKHEEKEDE---HGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPK 79 (125)
Q Consensus 8 ~ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~---~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk 79 (125)
.+++|||+++||+|+++++.|+|+|+++...+. ..+.+.+|.|+|.||.+||.++|+|+|.++|+|+|..|.
T Consensus 13 ~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~~~~ 87 (87)
T cd06482 13 SVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIETPC 87 (87)
T ss_pred EEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEeeCC
Confidence 467899999999999999999999998653221 235566899999999999999999999766699999883
No 17
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.78 E-value=1.8e-18 Score=116.14 Aligned_cols=77 Identities=27% Similarity=0.536 Sum_probs=63.3
Q ss_pred ceecCceEE----ecCcCCCCeEEEEECC-EEEEEEEEcee--eCCCceE-----EEEEEEEEECCCCCccCCcEEEeCC
Q psy4756 2 LRETGQRGT----KYYLDKAEISIKTVDG-FILVEGKHEEK--EDEHGFI-----SRQFKRRYLLPKDVEIEKVTSSLSS 69 (125)
Q Consensus 2 ~~e~~~~ld----vpGf~~edI~V~v~~~-~L~I~g~~~~~--~~~~~~~-----~r~f~R~~~LP~~vd~d~i~A~~~~ 69 (125)
++|+++.+. +|||+++||+|.++++ .|+|+|++... .....+. +++|.|+|.||.+|+.++|+|.| +
T Consensus 4 v~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~-~ 82 (92)
T cd06472 4 WKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFL-E 82 (92)
T ss_pred EEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEE-E
Confidence 467777665 5999999999999964 89999987543 1222343 23899999999999999999999 8
Q ss_pred CCEEEEEEeC
Q psy4756 70 DGVLTITAPK 79 (125)
Q Consensus 70 nGvL~I~lPk 79 (125)
||+|+|++||
T Consensus 83 nGvL~I~lPK 92 (92)
T cd06472 83 NGVLTVTVPK 92 (92)
T ss_pred CCEEEEEecC
Confidence 9999999997
No 18
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.74 E-value=2.2e-17 Score=110.77 Aligned_cols=76 Identities=30% Similarity=0.585 Sum_probs=62.5
Q ss_pred ceecCceEE----ecCcCCCCeEEEEECCEEEEEEEEceee---C-CCceEE-----EEEEEEEECCCCCccCCcEEEeC
Q psy4756 2 LRETGQRGT----KYYLDKAEISIKTVDGFILVEGKHEEKE---D-EHGFIS-----RQFKRRYLLPKDVEIEKVTSSLS 68 (125)
Q Consensus 2 ~~e~~~~ld----vpGf~~edI~V~v~~~~L~I~g~~~~~~---~-~~~~~~-----r~f~R~~~LP~~vd~d~i~A~~~ 68 (125)
++|+++.+. +|||+++||+|.++++.|+|+|++.... + ...|+. .+|.|+|.|| +++.+.++|+|
T Consensus 5 i~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~~- 82 (93)
T cd06471 5 IKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAKY- 82 (93)
T ss_pred EEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEEE-
Confidence 467777655 5999999999999999999999986431 1 123433 2799999999 79999999999
Q ss_pred CCCEEEEEEeC
Q psy4756 69 SDGVLTITAPK 79 (125)
Q Consensus 69 ~nGvL~I~lPk 79 (125)
+||+|+|++||
T Consensus 83 ~dGvL~I~lPK 93 (93)
T cd06471 83 ENGVLKITLPK 93 (93)
T ss_pred ECCEEEEEEcC
Confidence 89999999997
No 19
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.71 E-value=1.1e-16 Score=107.42 Aligned_cols=75 Identities=24% Similarity=0.497 Sum_probs=61.0
Q ss_pred ceecC-ce----EEecCcCCCCeEEEEECCEEEEEEEEceee-CCCceEE-----EEEEEEEECCCCCccCCcEEEeCCC
Q psy4756 2 LRETG-QR----GTKYYLDKAEISIKTVDGFILVEGKHEEKE-DEHGFIS-----RQFKRRYLLPKDVEIEKVTSSLSSD 70 (125)
Q Consensus 2 ~~e~~-~~----ldvpGf~~edI~V~v~~~~L~I~g~~~~~~-~~~~~~~-----r~f~R~~~LP~~vd~d~i~A~~~~n 70 (125)
++|++ +. +++|||+++||+|.++++.|+|+|++.... +..+|+. ++|.|+|.||.++|.+ +|.| +|
T Consensus 5 i~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~-~~ 81 (90)
T cd06470 5 IEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAEL-EN 81 (90)
T ss_pred eEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEE-eC
Confidence 45554 43 446999999999999999999999987653 2334543 3899999999999974 8999 89
Q ss_pred CEEEEEEeC
Q psy4756 71 GVLTITAPK 79 (125)
Q Consensus 71 GvL~I~lPk 79 (125)
|+|+|++|+
T Consensus 82 GvL~I~l~~ 90 (90)
T cd06470 82 GLLTIDLER 90 (90)
T ss_pred CEEEEEEEC
Confidence 999999985
No 20
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.69 E-value=1.2e-16 Score=104.23 Aligned_cols=76 Identities=37% Similarity=0.583 Sum_probs=62.9
Q ss_pred eecCce----EEecCcCCCCeEEEEECCEEEEEEEEceeeCC------CceEEEEEEEEEECCCCCccCCcEEEeCCCCE
Q psy4756 3 RETGQR----GTKYYLDKAEISIKTVDGFILVEGKHEEKEDE------HGFISRQFKRRYLLPKDVEIEKVTSSLSSDGV 72 (125)
Q Consensus 3 ~e~~~~----ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~------~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGv 72 (125)
.|+++. +++|||++++|+|.++++.|.|+|++...... .++..+.|.|+|.||.++|.+.++|.| .||+
T Consensus 3 ~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~-~~G~ 81 (88)
T cd06464 3 YETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASL-ENGV 81 (88)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEE-eCCE
Confidence 455544 45699999999999999999999998764321 123345899999999999999999999 7999
Q ss_pred EEEEEeC
Q psy4756 73 LTITAPK 79 (125)
Q Consensus 73 L~I~lPk 79 (125)
|+|++||
T Consensus 82 L~I~~pk 88 (88)
T cd06464 82 LTITLPK 88 (88)
T ss_pred EEEEEcC
Confidence 9999997
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.38 E-value=3.7e-12 Score=79.75 Aligned_cols=69 Identities=36% Similarity=0.544 Sum_probs=60.3
Q ss_pred EEecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeC
Q psy4756 9 GTKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPK 79 (125)
Q Consensus 9 ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk 79 (125)
+++||+.+++|.|.++++.|.|+|++..... .....+.|.+.+.||..++.+.++|.| .+|+|+|.+||
T Consensus 12 i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~-~~~~~~~~~~~~~L~~~i~~~~~~~~~-~~~~l~i~l~K 80 (80)
T cd00298 12 VDLPGVKKEDIKVEVEDNVLTISGKREEEEE-RERSYGEFERSFELPEDVDPEKSKASL-ENGVLEITLPK 80 (80)
T ss_pred EECCCCCHHHeEEEEECCEEEEEEEEcCCCc-ceEeeeeEEEEEECCCCcCHHHCEEEE-ECCEEEEEEcC
Confidence 4569999999999999999999998775432 334457899999999999999999999 79999999987
No 22
>KOG0710|consensus
Probab=99.32 E-value=2.2e-12 Score=97.97 Aligned_cols=85 Identities=28% Similarity=0.533 Sum_probs=66.7
Q ss_pred eEEecCcCCCCeEEEEECC-EEEEEEEEceeeCC------CceEEE---EEEEEEECCCCCccCCcEEEeCCCCEEEEEE
Q psy4756 8 RGTKYYLDKAEISIKTVDG-FILVEGKHEEKEDE------HGFISR---QFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 77 (125)
Q Consensus 8 ~ldvpGf~~edI~V~v~~~-~L~I~g~~~~~~~~------~~~~~r---~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~l 77 (125)
.+++||...++|+|.+++. .|+|+|++....+. +.+..+ .|.|+|.||++++.+.|+|.| .||+|+|.+
T Consensus 99 ~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~~-~nGVL~Vvv 177 (196)
T KOG0710|consen 99 KVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEIKAEM-ENGVLTVVV 177 (196)
T ss_pred EeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHHHHHh-hCCeEEEEE
Confidence 4678999999999999977 69999988654321 112222 799999999999999999999 899999999
Q ss_pred eCcCCCC-CCCCeEEee
Q psy4756 78 PKRTLQD-KTTERPVPI 93 (125)
Q Consensus 78 Pk~~~~~-~~~~r~I~I 93 (125)
||..... ....+.|.|
T Consensus 178 pK~~~~~~~~~v~~i~i 194 (196)
T KOG0710|consen 178 PKLEPLLKKPKVRQIAI 194 (196)
T ss_pred ecccccccCCccceeec
Confidence 9998831 123444554
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=98.98 E-value=3.5e-09 Score=68.14 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=53.8
Q ss_pred EEecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcCC
Q psy4756 9 GTKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTL 82 (125)
Q Consensus 9 ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~ 82 (125)
+++||+++++++|.++++.|.|.+ ..|.+.+.||..|+++..++++ .+|.|.|+++|...
T Consensus 12 i~~p~v~~~~v~v~~~~~~l~i~~-------------~~~~~~~~l~~~I~~e~~~~~~-~~~~l~i~L~K~~~ 71 (78)
T cd06469 12 VPLKGVKTSKVDIFCSDLYLKVNF-------------PPYLFELDLAAPIDDEKSSAKI-GNGVLVFTLVKKEP 71 (78)
T ss_pred EEeCCCccccceEEEecCEEEEcC-------------CCEEEEEeCcccccccccEEEE-eCCEEEEEEEeCCC
Confidence 345999999999999999999987 1378899999999999999999 79999999999864
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.50 E-value=8.2e-07 Score=56.55 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=55.5
Q ss_pred EEecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcCC
Q psy4756 9 GTKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTL 82 (125)
Q Consensus 9 ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~ 82 (125)
+.+||..++++.|.+.++.|.|++.... . ..|...+.|+..|+++...+++ .+|.|.|.|+|...
T Consensus 12 v~~~~~~~~~~~v~~~~~~l~i~~~~~~---~-----~~~~~~~~L~~~I~~~~s~~~~-~~~~l~i~L~K~~~ 76 (84)
T cd06463 12 IPLKDVTKKDVKVEFTPKSLTVSVKGGG---G-----KEYLLEGELFGPIDPEESKWTV-EDRKIEITLKKKEP 76 (84)
T ss_pred EEcCCCCccceEEEEecCEEEEEeeCCC---C-----CceEEeeEccCccchhhcEEEE-eCCEEEEEEEECCC
Confidence 3459999999999999999999987541 1 2367788899999999999999 79999999999875
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.22 E-value=5.8e-06 Score=62.11 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=47.3
Q ss_pred EecCcCCCC-eEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcCCC
Q psy4756 10 TKYYLDKAE-ISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTLQ 83 (125)
Q Consensus 10 dvpGf~~ed-I~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~~ 83 (125)
++||+..++ |+|.++.+.+.|...... .|.+++.||.. +.+.++++| +||||+|++-+....
T Consensus 109 dLPGVs~dd~idV~l~~d~~~L~i~~~~----------~~~krv~L~~~-~~e~~~~t~-nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 109 DLPGVSDDDAIDVTLDDDEGALTIRVGE----------KYLKRVALPWP-DPEITSATF-NNGILEIRIRRTEES 171 (177)
T ss_pred eCCCCCcccceeeEeecCCceEEEecCC----------ceEeeEecCCC-ccceeeEEE-eCceEEEEEeecCCC
Confidence 349999998 999999555444433221 14678999966 688899999 899999999887765
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=97.94 E-value=4.6e-05 Score=49.22 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=54.6
Q ss_pred EEecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcCC
Q psy4756 9 GTKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTL 82 (125)
Q Consensus 9 ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~ 82 (125)
+.+||+.++++.|.+.++.|.|++.... . ..|...+.|+..|+++..++.+ .+|.|.|.|.|...
T Consensus 13 v~~~~~~~~~v~v~~~~~~l~i~~~~~~---~-----~~~~~~~~L~~~I~~~~s~~~~-~~~~vei~L~K~~~ 77 (84)
T cd06466 13 IYAKNVDKEDVKVEFNEQSLSVSIILPG---G-----SEYQLELDLFGPIDPEQSKVSV-LPTKVEITLKKAEP 77 (84)
T ss_pred EEECCCCHHHCEEEEecCEEEEEEECCC---C-----CeEEEecccccccCchhcEEEE-eCeEEEEEEEcCCC
Confidence 3459999999999999999999877430 1 2366788999999999999999 79999999999864
No 27
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.37 E-value=0.00095 Score=53.17 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=50.2
Q ss_pred eEEecCc-CCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeC-CCCEEEEEEe
Q psy4756 8 RGTKYYL-DKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLS-SDGVLTITAP 78 (125)
Q Consensus 8 ~ldvpGf-~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~-~nGvL~I~lP 78 (125)
++.+||+ +..+|.|.|..+.|.|..... .|.=.+.||..||.+..+|.|. +.++|+|++|
T Consensus 266 ~i~LP~~~s~~~i~LdV~~~~l~l~~~~~-----------~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 266 EIELPGVESASDIDLDVSEDRLSLSSPKP-----------KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred EEECCCcCccceeEEEEeCCEEEEEeCCC-----------ceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 3556998 888999999999999886532 2455699999999999999996 5699999998
No 28
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=97.19 E-value=0.0079 Score=37.58 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=51.6
Q ss_pred ecCceEEe----cC--cCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEE
Q psy4756 4 ETGQRGTK----YY--LDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 77 (125)
Q Consensus 4 e~~~~ldv----pG--f~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~l 77 (125)
++.+.+.+ ++ ++++|+.|.+.++.|.|+..... + ..|.-.+.|...|+++.....+ .++.|.|+|
T Consensus 7 Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~-----~---~~~~~~~~L~~~I~~~~s~~~~-~~~~i~i~L 77 (79)
T PF04969_consen 7 QTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGD-----G---KEYLLEGELFGEIDPDESTWKV-KDNKIEITL 77 (79)
T ss_dssp EESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETT-----S---CEEEEEEEBSS-BECCCEEEEE-ETTEEEEEE
T ss_pred ECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccC-----C---ceEEEEEEEeeeEcchhcEEEE-ECCEEEEEE
Confidence 45555554 45 45999999999999999966432 1 3456677899999999999999 799999999
Q ss_pred eC
Q psy4756 78 PK 79 (125)
Q Consensus 78 Pk 79 (125)
.|
T Consensus 78 ~K 79 (79)
T PF04969_consen 78 KK 79 (79)
T ss_dssp EB
T ss_pred EC
Confidence 76
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=96.50 E-value=0.021 Score=37.04 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=51.7
Q ss_pred EEecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcC
Q psy4756 9 GTKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRT 81 (125)
Q Consensus 9 ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~ 81 (125)
+.++|+.++++.|.+.++.|.+++.... + ..|.-.+.|...|+++..+..+ ..+.+.|.|.|..
T Consensus 13 i~~k~~~~~~~~v~~~~~~l~~~~~~~~---~-----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~L~K~~ 76 (84)
T cd06489 13 ILIKNVKPEDVSVEFEKRELSATVKLPS---G-----NDYSLKLHLLHPIVPEQSSYKI-LSTKIEIKLKKTE 76 (84)
T ss_pred EEECCCCHHHCEEEEeCCEEEEEEECCC---C-----CcEEEeeecCceecchhcEEEE-eCcEEEEEEEcCC
Confidence 4569999999999999999999986521 1 1245567899999999888888 5888999999975
No 30
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=96.20 E-value=0.057 Score=36.71 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=50.3
Q ss_pred EecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcC
Q psy4756 10 TKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRT 81 (125)
Q Consensus 10 dvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~ 81 (125)
.++|. +++.|.+..+.|.|++.... ++ +.|.-.+.|...|+++..+..+ .++.|.|+|.|..
T Consensus 17 ~~~~~--~~~~V~~~~~~l~v~~~~~~--~~-----~~y~~~~~L~~~I~pe~s~~~v-~~~kveI~L~K~~ 78 (108)
T cd06465 17 ELPDA--KDPKIKLEPTSLSFKAKGGG--GG-----KKYEFDLEFYKEIDPEESKYKV-TGRQIEFVLRKKE 78 (108)
T ss_pred EeCCC--CCcEEEEECCEEEEEEEcCC--CC-----eeEEEEeEhhhhccccccEEEe-cCCeEEEEEEECC
Confidence 44887 89999999999999985321 11 2356677999999999999999 6899999999987
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=96.07 E-value=0.041 Score=35.36 Aligned_cols=67 Identities=21% Similarity=0.149 Sum_probs=50.5
Q ss_pred ecCceEEe-----cCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCC-CEEEEEE
Q psy4756 4 ETGQRGTK-----YYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSD-GVLTITA 77 (125)
Q Consensus 4 e~~~~ldv-----pGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~n-GvL~I~l 77 (125)
++++.+.+ .++.++|+.|.+..+.|.|+... + .++ +. ..|...|+++...-.+ .+ ..|.|+|
T Consensus 5 Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~-----~-~~~---l~--~~L~~~I~~~~s~w~~-~~~~~v~i~L 72 (85)
T cd06467 5 QTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG-----G-EPL---LD--GELYAKVKVDESTWTL-EDGKLLEITL 72 (85)
T ss_pred eeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC-----C-Cce---Ec--CcccCceeEcCCEEEE-eCCCEEEEEE
Confidence 45555554 47999999999999999998642 1 111 12 3588899999888888 67 9999999
Q ss_pred eCcCC
Q psy4756 78 PKRTL 82 (125)
Q Consensus 78 Pk~~~ 82 (125)
+|..+
T Consensus 73 ~K~~~ 77 (85)
T cd06467 73 EKRNE 77 (85)
T ss_pred EECCC
Confidence 99864
No 32
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=95.27 E-value=0.23 Score=32.28 Aligned_cols=67 Identities=19% Similarity=0.128 Sum_probs=48.8
Q ss_pred ecCceEEe-----cCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCC-EEEEEE
Q psy4756 4 ETGQRGTK-----YYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDG-VLTITA 77 (125)
Q Consensus 4 e~~~~ldv-----pGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nG-vL~I~l 77 (125)
+|.+++.+ +|..++|++|.+..+.|.|..+. +.-+ -.-.|...|+++.-.=++ .+| .|.|.|
T Consensus 5 Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~-----~~~~------~~g~L~~~I~~d~Stw~i-~~~~~l~i~L 72 (85)
T cd06493 5 QTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKD-----QAPL------LEGKLYSSIDHESSTWII-KENKSLEVSL 72 (85)
T ss_pred EeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCC-----CCeE------EeCcccCcccccCcEEEE-eCCCEEEEEE
Confidence 45566654 59999999999999999997521 1111 133788889998876666 466 699999
Q ss_pred eCcCC
Q psy4756 78 PKRTL 82 (125)
Q Consensus 78 Pk~~~ 82 (125)
.|...
T Consensus 73 ~K~~~ 77 (85)
T cd06493 73 IKKDE 77 (85)
T ss_pred EECCC
Confidence 99864
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=95.14 E-value=0.25 Score=32.25 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=48.6
Q ss_pred EecCcCC---CCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEE-ECCCCCccCCcEEEeCCCCEEEEEEeCcCC
Q psy4756 10 TKYYLDK---AEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRY-LLPKDVEIEKVTSSLSSDGVLTITAPKRTL 82 (125)
Q Consensus 10 dvpGf~~---edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~-~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~ 82 (125)
.+++..+ +++.|.+..+.|.|++.... + ..|.-.+ .|-..|+++..+..+ ..+.+.|.|.|...
T Consensus 18 ~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~-----~---~~~~~~~~~L~~~I~~e~s~~~~-~~~ki~i~L~K~~~ 85 (92)
T cd06468 18 TLKGVHQLPKENIQVEFTERSFELKVHDLN-----G---KNYRFTINRLLKKIDPEKSSFKV-KTDRIVITLAKKKE 85 (92)
T ss_pred EccCCCcCCcccEEEEecCCEEEEEEECCC-----C---cEEEEEehHhhCccCccccEEEE-eCCEEEEEEEeCCC
Confidence 3478776 99999999999999875321 1 1133344 488899999999999 68999999999864
No 34
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=94.34 E-value=0.49 Score=30.97 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=51.2
Q ss_pred EecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcCC
Q psy4756 10 TKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTL 82 (125)
Q Consensus 10 dvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~ 82 (125)
.+.|..++++.|.++.+.|.|+..... + ..|.-.+.|-..|+++..+-.. ..+.+.|.|.|...
T Consensus 17 ~~k~~~~~~~~v~~~~~~l~v~~~~~~-----~---~~y~~~l~L~~~I~~~~s~~~v-~~~kvei~L~K~~~ 80 (87)
T cd06488 17 YAKNSNPELSVVEANSTVLTIHIVFEG-----N---KEFQLDIELWGVIDVEKSSVNM-LPTKVEIKLRKAEP 80 (87)
T ss_pred EECcCCccceEEEecCCEEEEEEECCC-----C---ceEEEEeeccceEChhHcEEEe-cCcEEEEEEEeCCC
Confidence 348999999999999999988765331 1 2356677898999999988888 69999999999864
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=93.81 E-value=0.54 Score=31.61 Aligned_cols=66 Identities=17% Similarity=0.032 Sum_probs=48.6
Q ss_pred ecCceEEe-----cCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCE-EEEEE
Q psy4756 4 ETGQRGTK-----YYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGV-LTITA 77 (125)
Q Consensus 4 e~~~~ldv-----pGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGv-L~I~l 77 (125)
+|.+++.+ +|.++.|+.|.+..+.|.|.-+.. -++.. .|...|+.+.-.=++ .+|. |.|.|
T Consensus 12 QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~------~~l~G------~L~~~I~~destWtl-ed~k~l~I~L 78 (93)
T cd06494 12 QTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ------EVLKG------KLFDSVVADECTWTL-EDRKLIRIVL 78 (93)
T ss_pred eEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCE------EEEcC------cccCccCcccCEEEE-ECCcEEEEEE
Confidence 56666665 699999999999999999875211 12222 577888888877778 5665 89999
Q ss_pred eCcCC
Q psy4756 78 PKRTL 82 (125)
Q Consensus 78 Pk~~~ 82 (125)
.|...
T Consensus 79 ~K~~~ 83 (93)
T cd06494 79 TKSNR 83 (93)
T ss_pred EeCCC
Confidence 99853
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=86.81 E-value=7.9 Score=26.48 Aligned_cols=63 Identities=8% Similarity=-0.024 Sum_probs=45.1
Q ss_pred EEecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcCC
Q psy4756 9 GTKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTL 82 (125)
Q Consensus 9 ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~ 82 (125)
+.+++ ..|++|.++.+.|.++|... + |. .+.-.+.|=..|+++..+... ..-.+.|.|.|...
T Consensus 17 I~v~d--~~d~~v~l~~~~l~f~~~~~---~--g~---~y~~~l~l~~~I~pe~Sk~~v-~~r~ve~~L~K~~~ 79 (106)
T cd00237 17 FCVED--SKDVKVDFEKSKLTFSCLNG---D--NV---KIYNEIELYDRVDPNDSKHKR-TDRSILCCLRKGKE 79 (106)
T ss_pred EEeCC--CCCcEEEEecCEEEEEEECC---C--Cc---EEEEEEEeecccCcccCeEEe-CCceEEEEEEeCCC
Confidence 44577 68999999999999998432 1 11 134466777888888777777 46667788888763
No 37
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=86.16 E-value=7.4 Score=25.52 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=41.1
Q ss_pred cCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCC-EEEEEEeCcC
Q psy4756 14 LDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDG-VLTITAPKRT 81 (125)
Q Consensus 14 f~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nG-vL~I~lPk~~ 81 (125)
+++.||+|.+..+.|.|.-+... -.+.. .|...|+.|.-.=++ .+| .|.|+|-|..
T Consensus 22 ~~~kdv~v~i~~~~l~v~~~g~~-----~~i~G------~L~~~V~~des~Wtl-ed~~~l~i~L~K~~ 78 (87)
T cd06492 22 LKGKDVVVDIQRKHLKVGLKGQP-----PIIDG------ELYNEVKVEESSWLI-EDGKVVTVNLEKIN 78 (87)
T ss_pred ccceEEEEEEecCEEEEEECCCc-----eEEeC------cccCcccccccEEEE-eCCCEEEEEEEECC
Confidence 89999999999999998643110 12222 466778887766777 676 8999999875
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=83.66 E-value=5.7 Score=32.39 Aligned_cols=64 Identities=8% Similarity=-0.015 Sum_probs=49.8
Q ss_pred EecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcCC
Q psy4756 10 TKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTL 82 (125)
Q Consensus 10 dvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~ 82 (125)
.+.|+.++++.|.+..+.|.|+..... + ..|.-.+.|-..|+++..+..+ ..-.+.|+|.|...
T Consensus 173 ~~k~~~~~~~~v~~~~~~l~v~~~~~~-----~---~~y~~~~~L~~~I~p~~s~~~v-~~~Kiei~l~K~~~ 236 (356)
T PLN03088 173 FAKGVPAENVNVDFGEQILSVVIEVPG-----E---DAYHLQPRLFGKIIPDKCKYEV-LSTKIEIRLAKAEP 236 (356)
T ss_pred EecCCChHHcEEEeecCEEEEEEecCC-----C---cceeecccccccccccccEEEE-ecceEEEEEecCCC
Confidence 349999999999999999998865421 1 1234457888899999988888 57799999988764
No 39
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=82.60 E-value=2.3 Score=28.20 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=29.3
Q ss_pred EEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcCC
Q psy4756 47 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTL 82 (125)
Q Consensus 47 ~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~ 82 (125)
.|.-...|| +++.+.|+-++ .+|.|+|+.-+...
T Consensus 9 ~~~v~adlP-G~~kedI~V~v-~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKV-KDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEecc
Confidence 567788998 88999999999 79999999987653
No 40
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=78.35 E-value=4.7 Score=26.16 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=28.0
Q ss_pred EEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCc
Q psy4756 47 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKR 80 (125)
Q Consensus 47 ~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~ 80 (125)
.|.-.+.|| +++++.|+-.+ .+|.|+|++-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v-~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKV-LGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEc
Confidence 577789998 89999999999 799999999654
No 41
>PRK10743 heat shock protein IbpA; Provisional
Probab=77.27 E-value=8.2 Score=27.66 Aligned_cols=34 Identities=6% Similarity=0.174 Sum_probs=28.6
Q ss_pred EEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcCC
Q psy4756 47 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTL 82 (125)
Q Consensus 47 ~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~ 82 (125)
.|.-...|| +++.++|+-.+ .+|+|+|+.-+...
T Consensus 46 ~~~v~aelP-Gv~kedi~V~v-~~~~LtI~ge~~~~ 79 (137)
T PRK10743 46 HYRIAIAVA-GFAESELEITA-QDNLLVVKGAHADE 79 (137)
T ss_pred EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEECcc
Confidence 467788898 89999999999 79999999976543
No 42
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=75.73 E-value=5.6 Score=25.94 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=28.3
Q ss_pred EEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcC
Q psy4756 47 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRT 81 (125)
Q Consensus 47 ~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~ 81 (125)
.|.-.+.|| +++++.|+-++ .+|.|+|+.-+..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v-~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTT-SNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEec
Confidence 577788998 89999999999 7999999987643
No 43
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=74.17 E-value=6.7 Score=25.65 Aligned_cols=35 Identities=11% Similarity=0.234 Sum_probs=29.6
Q ss_pred EEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcCCC
Q psy4756 47 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTLQ 83 (125)
Q Consensus 47 ~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~~ 83 (125)
.|.=.+.|| ++..+.|+-.+ .+|.|+|+..+....
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~-~~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEV-ENNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEcccc
Confidence 467789998 58999999999 799999998776554
No 44
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=72.70 E-value=6.8 Score=25.06 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=29.8
Q ss_pred EEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcCC
Q psy4756 47 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTL 82 (125)
Q Consensus 47 ~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~ 82 (125)
.|.-.+.|| ++..+.|+-.+ .++.|+|++-+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v-~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKV-SDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEE-ECCEEEEEEEEeee
Confidence 578899998 59999999999 79999999987654
No 45
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=72.56 E-value=6.9 Score=25.41 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=28.7
Q ss_pred EEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcC
Q psy4756 47 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRT 81 (125)
Q Consensus 47 ~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~ 81 (125)
.|.=.+.|| +++.++|+-.+ .+|.|+|++-+..
T Consensus 11 ~~~i~~~lP-Gv~~edi~v~~-~~~~L~I~g~~~~ 43 (93)
T cd06471 11 EYIVEADLP-GFKKEDIKLDY-KDGYLTISAKRDE 43 (93)
T ss_pred EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 567789999 69999999999 7999999987764
No 46
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=70.36 E-value=14 Score=26.66 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=28.4
Q ss_pred EEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcC
Q psy4756 47 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRT 81 (125)
Q Consensus 47 ~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~ 81 (125)
.|.-.+.|| +++.++|.-.+ .+|+|+|+.-+..
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v-~~~~LtI~ge~~~ 76 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQL-EGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 477788998 88999999999 7999999997654
No 47
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=69.96 E-value=32 Score=23.41 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=45.3
Q ss_pred ecCceEEe----c-C-cCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCE-EEEE
Q psy4756 4 ETGQRGTK----Y-Y-LDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGV-LTIT 76 (125)
Q Consensus 4 e~~~~ldv----p-G-f~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGv-L~I~ 76 (125)
+|.++++| | | .+..||.|.+..+.|.|.-+.... ..-++.. .|+..|+.+.-.=++ .||. |.|+
T Consensus 11 QTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~--~~~~i~G------~L~~~V~~des~Wtl-ed~~~l~I~ 81 (102)
T cd06495 11 QDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGG--EKVLMEG------EFTHKINTENSLWSL-EPGKCVLLS 81 (102)
T ss_pred eECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCC--CceEEeC------cccCcccCccceEEE-eCCCEEEEE
Confidence 34455554 4 6 468999999999999987642110 0013333 466778887766677 6765 7999
Q ss_pred EeCcC
Q psy4756 77 APKRT 81 (125)
Q Consensus 77 lPk~~ 81 (125)
|-|..
T Consensus 82 L~K~~ 86 (102)
T cd06495 82 LSKCS 86 (102)
T ss_pred EEECC
Confidence 98874
No 48
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=69.18 E-value=11 Score=24.57 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=26.4
Q ss_pred EEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCc
Q psy4756 47 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKR 80 (125)
Q Consensus 47 ~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~ 80 (125)
.|.=.+.|| +++.++|+-.+ .+|.|+|+.-+.
T Consensus 8 ~~~i~~~lp-G~~~edi~I~~-~~~~L~I~g~~~ 39 (102)
T PF00011_consen 8 EYIIKVDLP-GFDKEDIKIKV-DDNKLVISGKRK 39 (102)
T ss_dssp EEEEEEE-T-TS-GGGEEEEE-ETTEEEEEEEEE
T ss_pred EEEEEEECC-CCChHHEEEEE-ecCccceeceee
Confidence 467788998 88999999999 799999999877
No 49
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=68.03 E-value=39 Score=23.65 Aligned_cols=59 Identities=27% Similarity=0.349 Sum_probs=37.5
Q ss_pred CeEEEEECCEEEEEEEEceeeCCCce--E--EEEEEEEEECCCCCccCCcEEEeCCCCEEEEEE
Q psy4756 18 EISIKTVDGFILVEGKHEEKEDEHGF--I--SRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 77 (125)
Q Consensus 18 dI~V~v~~~~L~I~g~~~~~~~~~~~--~--~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~l 77 (125)
.+++..+++.|.|..+....--..++ . .....=.+.||.++..++++... .+|-+.|.-
T Consensus 86 ~~~~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~-~~G~i~i~~ 148 (166)
T PF13349_consen 86 KPEISVEGGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKT-SSGDITIED 148 (166)
T ss_pred EEEEEEcCCEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEe-ccccEEEEc
Confidence 57777778888887762211001111 1 11346678889988778888888 688888763
No 50
>PF14913 DPCD: DPCD protein family
Probab=67.65 E-value=20 Score=27.50 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=25.4
Q ss_pred EEEEEECCCC------CccCCcEEEeCCCCEEEEEEeCcC
Q psy4756 48 FKRRYLLPKD------VEIEKVTSSLSSDGVLTITAPKRT 81 (125)
Q Consensus 48 f~R~~~LP~~------vd~d~i~A~~~~nGvL~I~lPk~~ 81 (125)
|.++|.+|+- .+.+.++-.. .|..|.|+..|..
T Consensus 132 YyKk~~IPDl~R~~l~l~~~~ls~~h-~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 132 YYKKFSIPDLDRCGLPLEQSALSFAH-QNNTLIISYKKPK 170 (194)
T ss_pred ceeEecCCcHHhhCCCcchhhceeee-ecCeEEEEecCcH
Confidence 5667777762 3777888989 8999999987753
No 51
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=67.51 E-value=13 Score=22.26 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=19.7
Q ss_pred cCcCCCCeEEEEECCEEEEEEEEc
Q psy4756 12 YYLDKAEISIKTVDGFILVEGKHE 35 (125)
Q Consensus 12 pGf~~edI~V~v~~~~L~I~g~~~ 35 (125)
++|+..+|.|.+.++.+.++|.-.
T Consensus 12 ~~~~~~~i~v~v~~g~v~L~G~v~ 35 (64)
T PF04972_consen 12 PWLPDSNISVSVENGVVTLSGEVP 35 (64)
T ss_dssp -CTT-TTEEEEEECTEEEEEEEES
T ss_pred cccCCCeEEEEEECCEEEEEeeCc
Confidence 467778999999999999999864
No 52
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=65.50 E-value=6.2 Score=24.30 Aligned_cols=27 Identities=7% Similarity=0.252 Sum_probs=21.7
Q ss_pred cCceEEecCcCCC-CeEEEEECCEEEEE
Q psy4756 5 TGQRGTKYYLDKA-EISIKTVDGFILVE 31 (125)
Q Consensus 5 ~~~~ldvpGf~~e-dI~V~v~~~~L~I~ 31 (125)
.|+-|.-.||... .|+|++..++|+|+
T Consensus 29 ~G~WL~~aGF~~G~~v~V~v~~g~lvIt 56 (57)
T PF08845_consen 29 KGKWLEEAGFTIGDPVKVRVMPGCLVIT 56 (57)
T ss_pred chhhhHHhCCCCCCEEEEEEECCEEEEe
Confidence 3555566899776 79999999999996
No 53
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=55.52 E-value=23 Score=21.91 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=28.7
Q ss_pred CCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEe
Q psy4756 16 KAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 78 (125)
Q Consensus 16 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lP 78 (125)
|+.++|.+.++.+.|.|..- ..++.||..+. +.... +|+.+.+...
T Consensus 2 P~gV~v~~~~~~i~v~G~~g-------------~l~~~~~~~v~---v~~~~-~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVKGPKG-------------ELSRPIPPGVK---VEIKV-EDNKITVSVL 47 (77)
T ss_dssp STTCEEEEETTEEEEESSSS-------------EEEEEETTTEE---EEEEE-ETTSEEEEEE
T ss_pred CCcEEEEEeCcEEEEECCCE-------------eEEEECCCCee---EEEEc-CCCceEEEEC
Confidence 57889999998888887532 23456666543 23335 4666665543
No 54
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=54.55 E-value=23 Score=23.01 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=26.9
Q ss_pred EEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcC
Q psy4756 47 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRT 81 (125)
Q Consensus 47 ~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~ 81 (125)
.|.-.+.|| ++.++.|+..+ .||.|+|+.-+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v-~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRT-VDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 466778885 68889999999 7999999997643
No 55
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=53.36 E-value=25 Score=22.95 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=27.8
Q ss_pred EEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcC
Q psy4756 47 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRT 81 (125)
Q Consensus 47 ~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~ 81 (125)
.|.-.+.|| +++++.|+-.+ .+|.|+|+.-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v-~~~~L~I~ge~~~ 40 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQV-FEGWLLIKGQHGV 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 467778885 68899999999 8999999997654
No 56
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=50.00 E-value=69 Score=24.06 Aligned_cols=19 Identities=11% Similarity=0.244 Sum_probs=17.0
Q ss_pred CCCeEEEEECCEEEEEEEE
Q psy4756 16 KAEISIKTVDGFILVEGKH 34 (125)
Q Consensus 16 ~edI~V~v~~~~L~I~g~~ 34 (125)
|++++|+++++.++|+|.+
T Consensus 13 P~~V~v~i~~~~v~VkGp~ 31 (180)
T PRK05518 13 PEGVTVEIEGLVVTVKGPK 31 (180)
T ss_pred CCCCEEEEECCEEEEECCC
Confidence 7899999999999999864
No 57
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=48.40 E-value=91 Score=23.13 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=29.4
Q ss_pred CCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEe
Q psy4756 16 KAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 78 (125)
Q Consensus 16 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lP 78 (125)
|++++|+++++.|+|+|.+- .+ .+.|. |. .|.... ++|.|.|...
T Consensus 7 P~~V~v~i~~~~i~vkGp~G-------~L----~~~~~-~~-----~v~i~~-~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGNIVTVKGPKG-------EV----TRELW-YP-----GIEISV-EDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeCCEEEEECCCe-------EE----EEEEe-CC-----cEEEEE-eCCEEEEEeC
Confidence 78999999999999998643 22 22221 22 344556 6777777743
No 58
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=47.82 E-value=17 Score=22.53 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.6
Q ss_pred cCcCCCCeEEEEECCEEEEEEEE
Q psy4756 12 YYLDKAEISIKTVDGFILVEGKH 34 (125)
Q Consensus 12 pGf~~edI~V~v~~~~L~I~g~~ 34 (125)
--|+.+.|.|....+.|.|.|+.
T Consensus 21 ~~f~~~~I~l~t~~g~l~I~G~~ 43 (66)
T PF07873_consen 21 LSFDDEEIRLNTKKGKLTIKGEG 43 (66)
T ss_dssp EEEETTEEEEEETTEEEEEEEEE
T ss_pred EEECCCEEEEEeCCEEEEEECce
Confidence 45889999999999999999985
No 59
>KOG1309|consensus
Probab=47.35 E-value=56 Score=25.03 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=40.6
Q ss_pred eEEecCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcC
Q psy4756 8 RGTKYYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRT 81 (125)
Q Consensus 8 ~ldvpGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~ 81 (125)
++..+++..+|+.|.+..+.|.|..+-.. .+.+ .-...|-..|.++...-.+ -.--++|+|+|..
T Consensus 18 ti~~k~v~~~~v~v~~s~~~l~~~~~~~~-g~~~-------~l~~~L~~~I~pe~~s~k~-~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 18 TIFAKNVPKEDVNVEISENTLSIVIQLPS-GSEY-------NLQLKLYHEIIPEKSSFKV-FSTKVEITLAKAE 82 (196)
T ss_pred EEEecCCCccceeEEeecceEEEEEecCC-chhh-------hhhHHhcccccccceeeEe-eeeeEEEEecccc
Confidence 34459999999999999999988755431 1111 1122244555666544444 3456788888843
No 60
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=45.98 E-value=84 Score=23.77 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=30.5
Q ss_pred CCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEe
Q psy4756 16 KAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 78 (125)
Q Consensus 16 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lP 78 (125)
|++++|+++++.|+|+|..- .+.+.|.. .| ..|.... +||.|.|+.+
T Consensus 13 P~~V~V~i~~~~v~VkGp~G-------~L~~~~~~---~~-----~~i~i~~-~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKSRKVTVTGKYG-------ELTRSFRH---LP-----VDIKLSK-DGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEECCEEEEECCCc-------eEEEEecC---CC-----ceEEEEe-CCCEEEEEeC
Confidence 79999999999999998643 33222211 11 2355667 6787777744
No 61
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=45.34 E-value=94 Score=23.10 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=16.8
Q ss_pred CCCeEEEEECCEEEEEEEE
Q psy4756 16 KAEISIKTVDGFILVEGKH 34 (125)
Q Consensus 16 ~edI~V~v~~~~L~I~g~~ 34 (125)
|++++|.++++.|+|+|..
T Consensus 12 P~~V~v~i~~~~v~vkGp~ 30 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPK 30 (178)
T ss_pred CCCCEEEEECCEEEEECCC
Confidence 7899999999999999863
No 62
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=42.64 E-value=73 Score=19.82 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=25.6
Q ss_pred EEEEEEECCCCCccCCcEEEeCCCCEEEEEEe
Q psy4756 47 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 78 (125)
Q Consensus 47 ~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lP 78 (125)
...=.|.||..+..++++..+ .+.-|.|.+.
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~-~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEI-TPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEE-EcCEEEEEEC
Confidence 456678899999999999999 5788888875
No 63
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=40.01 E-value=48 Score=22.05 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=26.6
Q ss_pred EEEEEEECCCCCccCCcEEEeCCCCEEEEEE
Q psy4756 47 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 77 (125)
Q Consensus 47 ~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~l 77 (125)
...-+|.||.++....+...+ ...-|.|.+
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i-~~~~l~V~~ 45 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKL-GSRDISLAV 45 (93)
T ss_pred EEEEEEECCCCCceeeEEEEE-EcCEEEEEE
Confidence 567788999999999999999 688888887
No 64
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=39.66 E-value=25 Score=23.19 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=19.9
Q ss_pred cCcCCCCeEEEEECCEEEEEEEE
Q psy4756 12 YYLDKAEISIKTVDGFILVEGKH 34 (125)
Q Consensus 12 pGf~~edI~V~v~~~~L~I~g~~ 34 (125)
--|+.+.|.+....+.|.|+|+.
T Consensus 39 ~~y~~~~I~l~t~~G~l~I~G~~ 61 (85)
T TIGR02856 39 VVFSPEEVKLNSTNGKITIEGKN 61 (85)
T ss_pred EEECCCEEEEEcCceEEEEEccc
Confidence 45889999999999999999974
No 65
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=39.66 E-value=47 Score=23.79 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.0
Q ss_pred cCcCCCCeEEEEECCEEEEEEEEce
Q psy4756 12 YYLDKAEISIKTVDGFILVEGKHEE 36 (125)
Q Consensus 12 pGf~~edI~V~v~~~~L~I~g~~~~ 36 (125)
.|+...+|.|.++++.++++|.-..
T Consensus 38 ~~~~~~~i~V~v~~G~v~l~G~v~s 62 (147)
T PRK11198 38 QGLGDADVNVQVEDGKATVSGDAAS 62 (147)
T ss_pred cCCCcCCceEEEeCCEEEEEEEeCC
Confidence 6888899999999999999998653
No 66
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=36.84 E-value=32 Score=22.79 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=21.2
Q ss_pred ecCcCCCCeEEEEECCEEEEEEEE
Q psy4756 11 KYYLDKAEISIKTVDGFILVEGKH 34 (125)
Q Consensus 11 vpGf~~edI~V~v~~~~L~I~g~~ 34 (125)
|--|+++.|.+....+.|.|+|+.
T Consensus 19 V~sfd~~~I~l~T~~G~L~I~G~~ 42 (85)
T TIGR02892 19 VISFDDEEILLETVMGFLTIKGQE 42 (85)
T ss_pred EEEECCCEEEEEeCcEEEEEEcce
Confidence 455899999999999999999975
No 67
>KOG3413|consensus
Probab=36.03 E-value=19 Score=26.57 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=16.7
Q ss_pred CCCccCCcEEEeCCCCEEEEEEeC
Q psy4756 56 KDVEIEKVTSSLSSDGVLTITAPK 79 (125)
Q Consensus 56 ~~vd~d~i~A~~~~nGvL~I~lPk 79 (125)
+.+..+.--+.| .||||+|.++-
T Consensus 67 e~~~~~~~Dv~y-~~GVLTl~lg~ 89 (156)
T KOG3413|consen 67 EEVPGEGFDVDY-ADGVLTLKLGS 89 (156)
T ss_pred hhcCcccccccc-ccceEEEEecC
Confidence 344444556789 79999999984
No 68
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=33.60 E-value=1.3e+02 Score=19.32 Aligned_cols=69 Identities=14% Similarity=0.077 Sum_probs=42.1
Q ss_pred ecCceEEe----c--CcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeC-CCCEEEEE
Q psy4756 4 ETGQRGTK----Y--YLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLS-SDGVLTIT 76 (125)
Q Consensus 4 e~~~~ldv----p--Gf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~-~nGvL~I~ 76 (125)
+|+..+.+ . +....++.+....+.|.|+-... + ..|...+.|=..|+.+. ...+. .-|.++|.
T Consensus 5 Qt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~---~------~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~ 74 (87)
T cd06490 5 QTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG---D------KSYLLHLDLSNEVQWPC-EVRISTETGKIELV 74 (87)
T ss_pred ECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC---C------ceEEEeeeccccCCCCc-EEEEcccCceEEEE
Confidence 45555544 4 34445555666677888865432 1 12456667877787764 44441 27899999
Q ss_pred EeCcCC
Q psy4756 77 APKRTL 82 (125)
Q Consensus 77 lPk~~~ 82 (125)
|.|...
T Consensus 75 L~K~e~ 80 (87)
T cd06490 75 LKKKEP 80 (87)
T ss_pred EEcCCC
Confidence 999764
No 69
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=33.22 E-value=48 Score=22.65 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=14.6
Q ss_pred CCcEEEeCCCCEEEEEEe
Q psy4756 61 EKVTSSLSSDGVLTITAP 78 (125)
Q Consensus 61 d~i~A~~~~nGvL~I~lP 78 (125)
..+.+.+ .+|||+|+++
T Consensus 28 ~d~D~e~-~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVET-QGGVLTLTFG 44 (105)
T ss_pred cCEeeec-cCCEEEEEEC
Confidence 4577889 6999999997
No 70
>KOG2265|consensus
Probab=32.14 E-value=1.9e+02 Score=21.97 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=42.4
Q ss_pred cCc-CCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcCC
Q psy4756 12 YYL-DKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTL 82 (125)
Q Consensus 12 pGf-~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~ 82 (125)
||+ +..+|.+.+...+|.|.-+... -++.. .|...|+.+...=++ ++|.+.|.+-++..
T Consensus 38 ~~~~ksk~v~~~Iq~~hI~V~~kg~~-----~ildG------~L~~~vk~des~Wti-Ed~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 38 PGTAKSKDVHCSIQSKHIKVGLKGQP-----PILDG------ELSHSVKVDESTWTI-EDGKMIVILLKKSN 97 (179)
T ss_pred CCCcccceEEEEeeeeEEEEecCCCC-----ceecC------ccccccccccceEEe-cCCEEEEEEeeccc
Confidence 788 8999999999999988755332 13322 244566777777788 89998888777665
No 71
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=31.84 E-value=2e+02 Score=21.13 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=32.3
Q ss_pred cCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEE
Q psy4756 12 YYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 77 (125)
Q Consensus 12 pGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~l 77 (125)
.-|.++++.+....+.+.|.|....--.+ +-.. .=.|.|. +.-.| .+|.|.|.-
T Consensus 126 s~F~~~~i~~d~~~~~V~V~G~l~t~~g~-~~~~-~~~~~y~---------~~~~~-~~g~~~L~~ 179 (187)
T PF05309_consen 126 SVFYPKSIEVDPETLTVFVTGTLKTWIGD-KKVS-SEDKTYR---------LQFKY-RNGRLWLKS 179 (187)
T ss_pred EEEEEeEEEEecCCCEEEEEEEEEEEECC-cccc-ceeEEEE---------EEEEE-eCCEEEEee
Confidence 34778888888889999999986542211 1111 1122332 34567 688888764
No 72
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=31.17 E-value=47 Score=22.69 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=14.8
Q ss_pred CCcEEEeCCCCEEEEEEeC
Q psy4756 61 EKVTSSLSSDGVLTITAPK 79 (125)
Q Consensus 61 d~i~A~~~~nGvL~I~lPk 79 (125)
..+.+.+ .+|||+|+++.
T Consensus 30 ~d~d~e~-~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVER-SGGVLTIEFPD 47 (109)
T ss_dssp STEEEEE-ETTEEEEEETT
T ss_pred CceEEEc-cCCEEEEEECC
Confidence 3588999 79999999943
No 73
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=30.35 E-value=51 Score=24.91 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=15.6
Q ss_pred CCCeEEEEECCEEEEEEEE
Q psy4756 16 KAEISIKTVDGFILVEGKH 34 (125)
Q Consensus 16 ~edI~V~v~~~~L~I~g~~ 34 (125)
|++++|+++++.|+|+|.+
T Consensus 12 P~~V~V~i~~~~ItVkGpk 30 (189)
T PTZ00179 12 PEDVTVSVKDRIVTVKGKR 30 (189)
T ss_pred CCCCEEEEeCCEEEEECCC
Confidence 6888899988888888853
No 74
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=30.25 E-value=55 Score=24.27 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=15.1
Q ss_pred CCCeEEEEECCEEEEEEE
Q psy4756 16 KAEISIKTVDGFILVEGK 33 (125)
Q Consensus 16 ~edI~V~v~~~~L~I~g~ 33 (125)
|++++|.++++.|+|+|.
T Consensus 11 P~~V~v~~~~~~v~v~Gp 28 (175)
T TIGR03654 11 PAGVEVTIDGNVVTVKGP 28 (175)
T ss_pred CCCcEEEEeCCEEEEEcC
Confidence 688888888888888885
No 75
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=30.02 E-value=57 Score=22.19 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.2
Q ss_pred CcEEEeCCCCEEEEEEeC
Q psy4756 62 KVTSSLSSDGVLTITAPK 79 (125)
Q Consensus 62 ~i~A~~~~nGvL~I~lPk 79 (125)
.+.+.+ .+|||+|+++.
T Consensus 26 d~D~e~-~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCER-AGGVLTLTFEN 42 (102)
T ss_pred Ceeeec-CCCEEEEEECC
Confidence 377889 69999999973
No 76
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=29.86 E-value=55 Score=24.29 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=15.4
Q ss_pred CCCeEEEEECCEEEEEEE
Q psy4756 16 KAEISIKTVDGFILVEGK 33 (125)
Q Consensus 16 ~edI~V~v~~~~L~I~g~ 33 (125)
|++++|.++++.|+|+|.
T Consensus 12 P~~V~v~~~~~~v~vkGp 29 (178)
T PRK05498 12 PAGVEVTINGNVVTVKGP 29 (178)
T ss_pred CCCCEEEEECCEEEEECC
Confidence 688889999988888885
No 77
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=29.78 E-value=53 Score=22.50 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.9
Q ss_pred cEEEeCCCCEEEEEEeC
Q psy4756 63 VTSSLSSDGVLTITAPK 79 (125)
Q Consensus 63 i~A~~~~nGvL~I~lPk 79 (125)
+.+.+ .+|||+|+++.
T Consensus 29 ~D~e~-~~gVLti~f~~ 44 (105)
T PRK00446 29 IDCER-NGGVLTLTFEN 44 (105)
T ss_pred eeeec-cCCEEEEEECC
Confidence 77889 79999999874
No 78
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=29.74 E-value=1.8e+02 Score=22.47 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=24.0
Q ss_pred EEEECCEEEEEEEEceee---CCCce-----------EEEEEEEEEECCCC
Q psy4756 21 IKTVDGFILVEGKHEEKE---DEHGF-----------ISRQFKRRYLLPKD 57 (125)
Q Consensus 21 V~v~~~~L~I~g~~~~~~---~~~~~-----------~~r~f~R~~~LP~~ 57 (125)
|.++++.|+|.+.++... ....| .+..|+-+++||..
T Consensus 60 v~v~~G~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDGNLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECCEEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 567899999999876521 11111 22368889999863
No 79
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.28 E-value=94 Score=21.16 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=22.6
Q ss_pred ceecCceEEe--cCcCCCCeEEEEECCEEEEEEE
Q psy4756 2 LRETGQRGTK--YYLDKAEISIKTVDGFILVEGK 33 (125)
Q Consensus 2 ~~e~~~~ldv--pGf~~edI~V~v~~~~L~I~g~ 33 (125)
+++.||.+.. ||. +.|++..+++.|.|.+.
T Consensus 28 v~~eGD~ivas~pgi--s~ieik~E~kkL~v~t~ 59 (96)
T COG4004 28 VSEEGDRIVASSPGI--SRIEIKPENKKLLVNTT 59 (96)
T ss_pred EeecccEEEEecCCc--eEEEEecccceEEEecc
Confidence 4678887776 554 56888888999998873
No 80
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=28.67 E-value=41 Score=20.83 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=15.4
Q ss_pred CCcEEEeCCCCEEEEEEeCcCCCCCCCCeEEeeee
Q psy4756 61 EKVTSSLSSDGVLTITAPKRTLQDKTTERPVPIVQ 95 (125)
Q Consensus 61 d~i~A~~~~nGvL~I~lPk~~~~~~~~~r~I~I~~ 95 (125)
..|+|.| .||+|.--=|..-++ ...-+|.|..
T Consensus 3 ~~I~aiY-e~GvlkPl~~~~L~E--g~~V~i~I~~ 34 (60)
T PF01954_consen 3 KVIEAIY-ENGVLKPLEPVDLPE--GEEVKITIEE 34 (60)
T ss_dssp --EEEEE-ETTEEEECS-----T--TEEEEEEE--
T ss_pred ceEEEEE-ECCEEEECCCCCCCC--CCEEEEEEec
Confidence 3589999 899998654443322 1233455544
No 81
>KOG3158|consensus
Probab=27.31 E-value=1.7e+02 Score=22.14 Aligned_cols=60 Identities=7% Similarity=0.104 Sum_probs=41.8
Q ss_pred CCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcCCC
Q psy4756 15 DKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTLQ 83 (125)
Q Consensus 15 ~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~~ 83 (125)
...+.+|.++..+|+++|+.... ++ .+.-.|.|=..||+++++..-+ +.+.+.++++...
T Consensus 27 d~~d~~v~~e~~~l~fs~k~~~d----~~---~~~~~ief~~eIdpe~sk~k~~--~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 27 DAKDVHVNLEPSKLTFSCKSGAD----NH---KYENEIEFFDEIDPEKSKHKRT--SRSIFCILRKKEL 86 (180)
T ss_pred cCccceeeccccEEEEEeccCCC----ce---eeEEeeehhhhcCHhhcccccc--ceEEEEEEEcccc
Confidence 35577888888899999986521 11 2456678888899998888773 6666666665443
No 82
>PF13285 DUF4073: Domain of unknown function (DUF4073)
Probab=26.75 E-value=2e+02 Score=21.28 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=46.0
Q ss_pred CCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEE---------EeCCCCE-EEEEE-eCcCCCC
Q psy4756 16 KAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTS---------SLSSDGV-LTITA-PKRTLQD 84 (125)
Q Consensus 16 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A---------~~~~nGv-L~I~l-Pk~~~~~ 84 (125)
..-|.|++..++++|+|.--....-...+.-+....-++|.+|..|..+- .|+-||- =.++. |...+.
T Consensus 51 ~qGL~V~vy~drV~v~A~Df~~~~~IkklsI~~~~~~Q~~P~V~ADD~~NilVG~~~~MEYsv~g~~~W~~y~p~npP~- 129 (158)
T PF13285_consen 51 KQGLQVEVYGDRVVVEARDFKRGKWIKKLSIHDGKIAQMAPDVTADDEKNILVGATEYMEYSVDGGNNWHTYDPANPPD- 129 (158)
T ss_pred ccceEEEEeCCeEEEEEEeccCCcchheeeeehhhhhhcCCccccccccceEeccccEEEEeecCccccEeCCcCCCCC-
Confidence 36799999999999998754432111122123455556777776654221 1222333 45555 233322
Q ss_pred CCCCeEEeeeeCCCCCCC
Q psy4756 85 KTTERPVPIVQTGVPALK 102 (125)
Q Consensus 85 ~~~~r~I~I~~~~~~a~~ 102 (125)
-.....+-|++-++....
T Consensus 130 ~~G~~~V~VR~K~~mn~~ 147 (158)
T PF13285_consen 130 FSGDQTVYVRHKGEMNLE 147 (158)
T ss_pred CCCceEEEEEecccccCC
Confidence 234566777766554433
No 83
>KOG2702|consensus
Probab=26.01 E-value=22 Score=28.70 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=37.0
Q ss_pred cCceEEecCcC-------CCCeEEEEECCEEEEEEEEcee-eCCCceEEEEEEEEEECCCCCc
Q psy4756 5 TGQRGTKYYLD-------KAEISIKTVDGFILVEGKHEEK-EDEHGFISRQFKRRYLLPKDVE 59 (125)
Q Consensus 5 ~~~~ldvpGf~-------~edI~V~v~~~~L~I~g~~~~~-~~~~~~~~r~f~R~~~LP~~vd 59 (125)
|...++||+|+ ++||.|+...+.|+++|..-.- +..|.-++..|.-++.||-+.+
T Consensus 208 t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~ 270 (323)
T KOG2702|consen 208 TIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYE 270 (323)
T ss_pred CCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHH
Confidence 56678899996 7899999999999999975332 2223323345555666665443
No 84
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=24.46 E-value=2.6e+02 Score=20.79 Aligned_cols=42 Identities=10% Similarity=0.084 Sum_probs=25.9
Q ss_pred cCCCCeEEEEECCEEEEEEEEceee----------CCCceEEEEEEEEEECCCC
Q psy4756 14 LDKAEISIKTVDGFILVEGKHEEKE----------DEHGFISRQFKRRYLLPKD 57 (125)
Q Consensus 14 f~~edI~V~v~~~~L~I~g~~~~~~----------~~~~~~~r~f~R~~~LP~~ 57 (125)
+.++++.| +++.|+|++.++... ....+.+..|+-++++|..
T Consensus 29 ~~~~nv~v--~~g~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 29 WSADNVEF--SDGGLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred EccccEEE--ECCeEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 35666554 589999998765321 0111233478888998864
No 85
>KOG1667|consensus
Probab=24.46 E-value=3.7e+02 Score=21.87 Aligned_cols=64 Identities=14% Similarity=0.008 Sum_probs=44.7
Q ss_pred cCcCCCCeEEEEECCEEEEEEEEceeeCCCceEEEEEEEEEECCCCCccCCcEEEeCCCCEEEEEEeCcCCC
Q psy4756 12 YYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRTLQ 83 (125)
Q Consensus 12 pGf~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~r~f~R~~~LP~~vd~d~i~A~~~~nGvL~I~lPk~~~~ 83 (125)
.|..|+.-.|..++-.|.|+-.... =.++|.-.+.|=.-|+.+...+.| -.-..+|+|+|+++.
T Consensus 233 k~~lpe~s~iean~~~l~V~ivf~~-------gna~fd~d~kLwgvvnve~s~v~m-~~tkVEIsl~k~ep~ 296 (320)
T KOG1667|consen 233 KGALPETSNIEANGTTLHVSIVFGF-------GNASFDLDYKLWGVVNVEESSVVM-GETKVEISLKKAEPG 296 (320)
T ss_pred ccCCcccceeeeCCeEEEEEEEecC-------CCceeeccceeeeeechhhceEEe-ecceEEEEEeccCCC
Confidence 5666666666666666665544321 013577777777778999999999 588899999999865
No 86
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=24.16 E-value=65 Score=21.75 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=12.4
Q ss_pred EEEeCCCCEEEEEEeC
Q psy4756 64 TSSLSSDGVLTITAPK 79 (125)
Q Consensus 64 ~A~~~~nGvL~I~lPk 79 (125)
.+.+ .+|||+|+++.
T Consensus 30 D~e~-~~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEY-SSGVLTLELPS 44 (97)
T ss_pred cccc-CCCEEEEEECC
Confidence 6778 79999999853
No 87
>PRK13605 endoribonuclease SymE; Provisional
Probab=23.52 E-value=80 Score=22.22 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=23.7
Q ss_pred CceEEecCcCCC-CeEEEEECCEEEEEEEEc
Q psy4756 6 GQRGTKYYLDKA-EISIKTVDGFILVEGKHE 35 (125)
Q Consensus 6 ~~~ldvpGf~~e-dI~V~v~~~~L~I~g~~~ 35 (125)
|.=|.-.||.-. .|.|.+.+++|+|.++..
T Consensus 44 G~WLeeAGF~tG~~V~V~V~~G~LVIt~~~~ 74 (113)
T PRK13605 44 GQWLEAAGFATGTAVDVRVMEGCIVLTAQPP 74 (113)
T ss_pred chhHHhhCCCCCCeEEEEEeCCEEEEEeCCC
Confidence 333444788887 799999999999998875
No 88
>PRK10568 periplasmic protein; Provisional
Probab=22.08 E-value=1.5e+02 Score=22.28 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.4
Q ss_pred cCcCCCCeEEEEECCEEEEEEEEc
Q psy4756 12 YYLDKAEISIKTVDGFILVEGKHE 35 (125)
Q Consensus 12 pGf~~edI~V~v~~~~L~I~g~~~ 35 (125)
++++..+|+|.+.++.+.+.|.-.
T Consensus 73 ~~i~~~~I~V~v~~G~V~L~G~V~ 96 (203)
T PRK10568 73 DNIKSTDISVKTHQKVVTLSGFVE 96 (203)
T ss_pred CCCCCCceEEEEECCEEEEEEEeC
Confidence 678888999999999999999864
Done!