RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4756
(125 letters)
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 111 bits (279), Expect = 2e-32
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 14 LDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVL 73
E+ +K + I V GKHEE++DEHGFISR+F R+Y +P DV+ +TSSLSSDGVL
Sbjct: 84 FSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVL 143
Query: 74 TITAPKRTLQDKTTERPVPIVQTGVPALKPQ 104
T+ P++ + ER +PI + PA+
Sbjct: 144 TVNGPRKQVSGP--ERTIPITREEKPAVTAA 172
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 99.0 bits (247), Expect = 9e-29
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 15 DKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLT 74
E+++KT DG + + GKH ++DEHG+ISR F R+Y LP V+ +V+SSLS +G LT
Sbjct: 19 APDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLT 78
Query: 75 ITAPK 79
+ AP
Sbjct: 79 VEAPM 83
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 98.8 bits (246), Expect = 2e-28
Identities = 31/84 (36%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 14 LDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVL 73
++++K + F+ + GKH E++D+HG+ISR+F RRY LP +V+ ++ SLS+DG+L
Sbjct: 23 FSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGML 82
Query: 74 TITAPK--RTLQDKTTERPVPIVQ 95
T + PK + +ER +P+ +
Sbjct: 83 TFSGPKIPSGVDAGHSERAIPVSR 106
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 96.0 bits (239), Expect = 3e-27
Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 14 LDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVL 73
EIS+K V + V +HEE+ DEHGFI+R+F RRY LP V+ VTS+LS +GVL
Sbjct: 22 FSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVL 81
Query: 74 TITAPKRTLQDKTTERPVPIVQ 95
+I A + Q P P
Sbjct: 82 SIQATPASAQ---ASLPSPPAA 100
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 95.2 bits (237), Expect = 4e-27
Identities = 34/70 (48%), Positives = 49/70 (70%)
Query: 14 LDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVL 73
E+ +K + I V GKHEE++DEHGFISR+F R+Y +P DV+ +TSS+SSDGVL
Sbjct: 17 FSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVL 76
Query: 74 TITAPKRTLQ 83
T+ P++ +
Sbjct: 77 TVNGPRKQVS 86
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 85.3 bits (210), Expect = 3e-21
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 14 LDKAEISIKTVDGFILVEG---KHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSD 70
++ + + V G K E+ E+ R+F + ++ P+ V+ K + + D
Sbjct: 245 FAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEI-VD 303
Query: 71 GVLTITAPK 79
G++ + AP
Sbjct: 304 GLMVVEAPL 312
Score = 84.5 bits (208), Expect = 7e-21
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 1/104 (0%)
Query: 15 DKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLT 74
EI+IK ++V + +S R LP V+ + +++++D VL
Sbjct: 124 KAEEITIKADKNKLVVRAQKSVA-CGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLV 182
Query: 75 ITAPKRTLQDKTTERPVPIVQTGVPALKPQAPSSNSSTQQSQPI 118
I AP K + P+ + + + + + +
Sbjct: 183 IEAPVNEPNYKAIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIV 226
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 57.7 bits (140), Expect = 6e-12
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 14 LDKAEISIKTVDGFILV---EGKHEEKEDEHGFISR-----QFKRRYLLPKDVEIEKVTS 65
+ K E+ ++ DG +LV E E+++ + +F RR+ L +D ++E+V +
Sbjct: 64 VKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKA 123
Query: 66 SLSSDGVLTITAPKRTLQDKTTERPVPI 93
L +GVLT+T PK K + + I
Sbjct: 124 GLE-NGVLTVTVPKAE-VKKPEVKAIQI 149
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 53.3 bits (129), Expect = 1e-10
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 14 LDKAEISIKTVDGFILVEG--KHEEKEDEHGFISR-----QFKRRYLLPKDVEIEKVTSS 66
+D ++I ++ G + + G K E + F F RR+ LP + + +T++
Sbjct: 25 IDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAA 84
Query: 67 LSSDGVLTITAPKR 80
+GVL I PKR
Sbjct: 85 GR-NGVLEIRIPKR 97
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 50.9 bits (122), Expect = 3e-09
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 14 LDKAEISIKTVDGFILVEG--KHEEKEDEHGFISR------QFKRRYLLPKDVEIEKVTS 65
++K +I + V + + + I + R LP V+ E ++
Sbjct: 77 VNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASA 136
Query: 66 SLSSDGVLTITAPKR 80
+GVL++ PK
Sbjct: 137 KFE-NGVLSVILPKA 150
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 43.8 bits (104), Expect = 9e-07
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 14 LDKAEISIK-TVDGFILVEGKHEEKEDEHGFISR---QFKRRYLLPKDVEIEKVTSSLSS 69
+K +I + + +++E + E E ++++ ++ LP +V + S
Sbjct: 45 FNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYE 104
Query: 70 DGVLTITAPKR 80
+GVLTI P
Sbjct: 105 NGVLTIRIPIA 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.001
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 16/96 (16%)
Query: 26 GFI--LVEGKHEEKEDE---HGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKR 80
G++ LVE + D+ +F+ YL D I + + L + T+ K
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCL--TEFENCYLEGND--IHALAAKLLQENDTTLVKTKE 121
Query: 81 TLQ-----DKTTERPVPIVQTGVPALKPQAPSSNSS 111
++ +RP + AL N+
Sbjct: 122 LIKNYITARIMAKRPFD--KKSNSALFRAVGEGNAQ 155
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.20
Identities = 12/93 (12%), Positives = 33/93 (35%), Gaps = 17/93 (18%)
Query: 1 MLRETGQRGTKY-YLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVE 59
+R+ + +++ +++ ++ + V E ++ F R + P
Sbjct: 336 SIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRK--------MFDRLSVFPPSAH 386
Query: 60 I-EKVTSSL----SSDGVLTITAP--KRTLQDK 85
I + S + V+ + K +L +K
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.24
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 9/33 (27%)
Query: 59 EIEKVTSSL---SSDGVLTITAPKRTLQDKTTE 88
++K+ +SL + D +AP ++ T E
Sbjct: 21 ALKKLQASLKLYADD-----SAPALAIK-ATME 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.128 0.349
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,735,552
Number of extensions: 91142
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 24
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.5 bits)