RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4756
         (125 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 44.4 bits (104), Expect = 3e-07
 Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 8/82 (9%)

Query: 18  EISIKTVDGFILVEGKHEEKEDEHG------FISRQFKRRYLLPKDVEIEKVTSSLSSDG 71
           ++ ++  +  ++   + +EKED++         S +F RR+ L +D ++E+V + L  +G
Sbjct: 69  KVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLE-NG 127

Query: 72  VLTITAPKRTLQDKTTERPVPI 93
           VLT+T PK     K   + + I
Sbjct: 128 VLTVTVPKAE-VKKPEVKAIQI 148


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 41.2 bits (96), Expect = 3e-06
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 12/88 (13%)

Query: 14  LDKAEISIKTVDGFILVEGKHEEKEDE--------HGFISRQFKRRYLLPKDVEIEKVTS 65
           ++K +I +  V   + +  K                     +  R   LP  V+ E  ++
Sbjct: 31  VNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASA 90

Query: 66  SLSSDGVLTITAPKRTLQDKTTERPVPI 93
               +GVL++  PK    + + ++ + I
Sbjct: 91  KFE-NGVLSVILPKA---ESSIKKGINI 114


>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 194

 Score = 26.3 bits (58), Expect = 1.0
 Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 2   LRETGQRGTKYYLDKAEISIKTVD-----GFILVEGKHEEKEDEHGFISRQFKRRYLLPK 56
           + E  ++ +  YL +  + I          F++ + +   +E E         +  L P 
Sbjct: 115 IEELSEKYSIIYLKEDGVDISNAQLPPNPLFVIGDHEGLTEEQEKVVERYAALKLSLSPL 174


>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and
          beige-like anchor protein LRBA {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 110

 Score = 24.5 bits (53), Expect = 3.0
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 12 YYLDKAEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIE 61
          + +D+ + + K +D  IL   +    +     I   F RRYLL ++  +E
Sbjct: 31 FEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLL-QNTALE 79


>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID
           subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 97

 Score = 24.4 bits (53), Expect = 3.0
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 70  DGVLTITAPKRTLQDKTTERP----VPIVQTGVPALKPQAPSSNSSTQQSQ 116
           DG +        L  +    P    VP ++  +PAL+   P S +  QQSQ
Sbjct: 47  DGKIEAEDFTSRLYRELNSSPQPYLVPFLKRSLPALRQLTPDSAAFIQQSQ 97


>d2pp4a1 a.277.1.1 (A:119-225) ETO {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 107

 Score = 22.9 bits (49), Expect = 9.0
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 70  DGVLTITAPKRTLQDKTTERP----VPIVQTGVPALKPQAPSSNSSTQQSQP 117
           +  LTI      LQ+ T        +P ++  +P L+ +        +Q+  
Sbjct: 39  NSTLTIEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARLAKQNPA 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.128    0.349 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 419,503
Number of extensions: 17239
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 9
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (22.5 bits)