BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4757
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KVT|A Chain A, Tetramerization Domain From Akv3.1 (shaw-subfamily)
Voltage-gated Potassium Channel
Length = 115
Score = 220 bits (561), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 98/115 (85%), Positives = 109/115 (94%)
Query: 1 MDGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQI 60
MD E+R+I+NVGGIR+ETYKATLKKIPATRLSRLTE + NYDP+LNEYFFDRHPGVFAQI
Sbjct: 1 MDAENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQI 60
Query: 61 LNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAIL 115
+NYYR+GKLHYPT+VCGPLFEEELEFWGLDSNQVEPCCW TY+ HRDTQ TLA+L
Sbjct: 61 INYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTAHRDTQETLAVL 115
>pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shal Voltage- Gated Potassium Channel
Length = 105
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 62/100 (62%), Gaps = 1/100 (1%)
Query: 7 IILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRT 66
I+LNV G R++T++ TL++ P T L +E Y P +YFFDR P +F ILN+YRT
Sbjct: 2 IVLNVSGTRFQTWQDTLERYPDTLLGS-SERDFFYHPETQQYFFDRDPDIFRHILNFYRT 60
Query: 67 GKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHR 106
GKLHYP + C ++EEL F+GL + CC+ Y R
Sbjct: 61 GKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRR 100
>pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain
pdb|1S1G|B Chain B, Crystal Structure Of Kv4.3 T1 Domain
Length = 124
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 7 IILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRT 66
I+LNV G R++T++ TL++ P T L TE ++ EYFFDR P VF +LN+YRT
Sbjct: 15 IVLNVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 73
Query: 67 GKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYS 103
GKLHYP C +++EL F+G+ + CC+ Y
Sbjct: 74 GKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYK 110
>pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|D Chain D, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 140
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 7 IILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRT 66
I+LNV G R++T++ TL++ P T L TE ++ EYFFDR P VF +LN+YRT
Sbjct: 37 IVLNVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 95
Query: 67 GKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYS 103
GKLHYP C +++EL F+G+ + CC+ Y
Sbjct: 96 GKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYK 132
>pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|B Chain B, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|C Chain C, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|D Chain D, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|I Chain I, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|J Chain J, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|K Chain K, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|L Chain L, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 144
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 7 IILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRT 66
I+LNV G R++T++ TL++ P T L TE ++ EYFFDR P VF +LN+YRT
Sbjct: 43 IVLNVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 101
Query: 67 GKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYS 103
GKLHYP C +++EL F+G+ + CC+ Y
Sbjct: 102 GKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYK 138
>pdb|1EXB|E Chain E, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of
Voltage-Dependent K Channels
Length = 103
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 6 RIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYR 65
R+++N+ G+R+ET TL + P T L + + +DP+ NEYFFDR+ F IL YY+
Sbjct: 12 RVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQ 71
Query: 66 T-GKLHYPTNVCGPLFEEELEFWGLDSNQVE 95
+ G+L P NV +F EE++F+ L +E
Sbjct: 72 SGGRLRRPVNVPLDMFSEEIKFYELGEEAME 102
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 2 DGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQIL 61
+ R+++N+ G+R+ET TL + P T L + + +DP+ NEYFFDR+ F IL
Sbjct: 49 ESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAIL 108
Query: 62 NYYRT-GKLHYPTNVCGPLFEEELEFWGLDSNQVE 95
YY++ G+L P NV +F EE+ F+ L +E
Sbjct: 109 YYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAME 143
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 2 DGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQIL 61
+ R+++N+ G+R+ET TL + P T L + + +DP+ NEYFFDR+ F IL
Sbjct: 49 ESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAIL 108
Query: 62 NYYRT-GKLHYPTNVCGPLFEEELEFWGLDSNQVE 95
YY++ G+L P NV +F EE+ F+ L +E
Sbjct: 109 YYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAME 143
>pdb|1T1D|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shaker Potassium Channel
Length = 100
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 5 HRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYY 64
R+++NV G+R+ET TL + P T L + YDP+ NEYFFDR+ F IL +Y
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 65 RT-GKLHYPTNVCGPLFEEELEFWGLDSNQVE 95
++ G+L P NV +F EE++F+ L N E
Sbjct: 61 QSGGRLRRPVNVPLDVFSEEIKFYELGENAFE 92
>pdb|1QDV|A Chain A, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-131
pdb|1QDV|B Chain B, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-131
pdb|1QDV|C Chain C, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-131
pdb|1QDV|D Chain D, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-131
Length = 99
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 5 HRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYY 64
R+++N+ G+R+ET TL + P T L + + +DP+ NEYFFDR+ F IL YY
Sbjct: 1 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 65 RT-GKLHYPTNVCGPLFEEELEFWGLDSNQVE 95
++ G+L P NV +F EE+ F+ L +E
Sbjct: 61 QSGGRLRRPVNVPLDIFSEEIRFYELGEEAME 92
>pdb|1A68|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shaker Potassium Channel
Length = 95
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 5 HRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYY 64
R+++NV G+R+ET TL + P T L + YDP+ NEYFFDR+ F IL +Y
Sbjct: 2 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 61
Query: 65 RT-GKLHYPTNVCGPLFEEELEFWGLDSNQVE 95
++ G+L P NV +F EE++F+ L N E
Sbjct: 62 QSGGRLRRPVNVPLDVFSEEIKFYELGENAFE 93
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 5 HRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYY 64
R+++N+ G+R+ET TL + P T L + + +DP+ NEYFFDR+ F IL YY
Sbjct: 33 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 92
Query: 65 RT-GKLHYPTNVCGPLFEEELEFWGLDSNQVE 95
++ G+L P NV +F EE+ F+ L +E
Sbjct: 93 QSGGRLRRPVNVPLDIFSEEIRFYELGEEAME 124
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 5 HRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYY 64
R+++N+ G+R+ET TL + P T L + + +DP+ NEYFFDR+ F IL YY
Sbjct: 33 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 92
Query: 65 RT-GKLHYPTNVCGPLFEEELEFWGLDSNQVE 95
++ G+L P NV +F EE+ F+ L +E
Sbjct: 93 QSGGRLRRPVNVPLDIFSEEIRFYELGEEAME 124
>pdb|1EOE|A Chain A, Crystal Structure Of The V135r Mutant Of A Shaker T1
Domain
Length = 100
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 5 HRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYY 64
R+++NV G+R+ET TL + P T L + YDP+ NEYFFDR+ F IL +Y
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 65 RT-GKLHYPTNVCGPLFEEELEFWGLDSNQVE 95
++ G+L P NV +F EE++F+ L N E
Sbjct: 61 QSGGRLRRPRNVPLDVFSEEIKFYELGENAFE 92
>pdb|1EOD|A Chain A, Crystal Structure Of The N136d Mutant Of A Shaker T1
Domain
Length = 100
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 5 HRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYY 64
R+++NV G+R+ET TL + P T L + YDP+ NEYFFDR+ F IL +Y
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 65 RT-GKLHYPTNVCGPLFEEELEFWGLDSNQVE 95
++ G+L P +V +F EE++F+ L N E
Sbjct: 61 QSGGRLRRPVDVPLDVFSEEIKFYELGENAFE 92
>pdb|1QDW|A Chain A, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|B Chain B, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|C Chain C, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|D Chain D, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|E Chain E, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|F Chain F, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|G Chain G, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|H Chain H, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
Length = 87
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 5 HRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYY 64
R+++N+ G+R+ET TL + P T L + + +DP+ NEYFFDR+ F IL YY
Sbjct: 1 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 65 RT-GKLHYPTNVCGPLFEEELEFWGL 89
++ G+L P NV +F EE+ F+ L
Sbjct: 61 QSGGRLRRPVNVPLDIFSEEIRFYEL 86
>pdb|1EOF|A Chain A, Crystal Structure Of The N136a Mutant Of A Shaker T1
Domain
Length = 100
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 5 HRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYY 64
R+++NV G+R+ET TL + P T L + YDP+ NEYFFDR+ F IL +Y
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 65 RT-GKLHYPTNVCGPLFEEELEFWGLDSNQVE 95
++ G+L P V +F EE++F+ L N E
Sbjct: 61 QSGGRLRRPVAVPLDVFSEEIKFYELGENAFE 92
>pdb|1DSX|A Chain A, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|B Chain B, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|C Chain C, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|D Chain D, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|E Chain E, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|F Chain F, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|G Chain G, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|H Chain H, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
Length = 87
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 5 HRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYY 64
R+++N+ G+R+E TL + P T L + + +DP+ NEYFFDR+ F IL YY
Sbjct: 1 ERVVINISGLRFEVQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 65 RT-GKLHYPTNVCGPLFEEELEFWGL 89
++ G+L P NV +F EE+ F+ L
Sbjct: 61 QSGGRLRRPVNVPLDIFSEEIRFYEL 86
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|B Chain B, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|C Chain C, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|D Chain D, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|E Chain E, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRY|A Chain A, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|B Chain B, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|C Chain C, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|D Chain D, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|E Chain E, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
Length = 202
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 7 IILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNE---YFFDRHPGVFAQILNY 63
+ LNVGG + T + TL + P + L RL +A + D +E Y DR P F +LNY
Sbjct: 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNY 73
Query: 64 YRTGKLHYPTNVCGPLFEEELEFWGLDS 91
R GKL ++ EE EF+ + S
Sbjct: 74 LRHGKLVINKDLAEEGVLEEAEFYNITS 101
>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|B Chain B, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|C Chain C, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|D Chain D, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|E Chain E, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
Length = 107
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 7 IILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNE---YFFDRHPGVFAQILNY 63
+ LNVGG + T + TL + P + L RL +A + D +E Y DR P F +LNY
Sbjct: 8 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNY 67
Query: 64 YRTGKLHYPTNVCGPLFEEELEFWGLDS 91
R GKL ++ EE EF+ + S
Sbjct: 68 LRHGKLVINKDLAEEGVLEEAEFYNITS 95
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 86 FWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDIDAEKPTEEEIARMFGYED 138
W + + W+TY + +T+ + ++D +D + T+EE+ RM +ED
Sbjct: 64 MWDIGGQESLRSSWNTY--YSNTEFIILVVDSIDRERLAITKEELYRMLAHED 114
>pdb|1T5J|A Chain A, Crystal Structure Of Ribosylglycohydrolase Mj1187 From
Methanococcus Jannaschii
Length = 313
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 113 AILDKLDIDAEKPTEEEIARMFGYEDAYLE 142
I D L + E T+EEI +++G+ D+Y+E
Sbjct: 18 VIGDALGMPTENLTKEEIKKLYGFVDSYVE 47
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 86 FWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDIDAEKPTEEEIARMFGYED 138
W + + W+TY + +T+ + ++D D + T EE+ +M +ED
Sbjct: 64 MWDIGGQESLRSSWNTY--YTNTEFVIVVVDSTDRERISVTREELYKMLAHED 114
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 86 FWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDIDAEKPTEEEIARMFGYED 138
W + + W+TY + +T+ + ++D D + T EE+ +M +ED
Sbjct: 64 MWDIGGQESLRSSWNTY--YTNTEFVIVVVDSTDRERISVTREELYKMLAHED 114
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 86 FWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDIDAEKPTEEEIARMFGYED 138
W + + W+TY + +T+ + ++D D + T EE+ +M +ED
Sbjct: 69 MWDIGGQESLRSSWNTY--YTNTEFVIVVVDSTDRERISVTREELYKMLAHED 119
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 86 FWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDIDAEKPTEEEIARMFGYED 138
W + + W+TY + +T+ + ++D D + T EE+ +M +ED
Sbjct: 70 MWDIGGQESLRSSWNTY--YTNTEFVIVVVDSTDRERISVTREELYKMLAHED 120
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 112 LAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKV 155
L IL++ D+D EKP +++R ++ + D + ++++K K+
Sbjct: 219 LRILERFDVDPEKPIITQVSRFDPWKGIF--DVIEIYRKVKEKI 260
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 112 LAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKV 155
L IL++ D+D EKP +++R ++ + D + ++++K K+
Sbjct: 219 LRILERFDVDPEKPIITQVSRFDPWKGIF--DVIEIYRKVKEKI 260
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 112 LAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKV 155
L IL++ D+D EKP +++R ++ + D + ++++K K+
Sbjct: 219 LRILERFDVDPEKPIITQVSRFDPWKGIF--DVIEIYRKVKEKI 260
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 41 YDPILNEYFFDRHPGVFAQI 60
YD L E F D+HPG F+Q+
Sbjct: 221 YDRTLREIFPDQHPGGFSQL 240
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 41 YDPILNEYFFDRHPGVFAQI 60
YD L E F D+HPG F+Q+
Sbjct: 221 YDRTLREIFPDQHPGGFSQL 240
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 41 YDPILNEYFFDRHPGVFAQI 60
YD L E F D+HPG F+Q+
Sbjct: 221 YDRTLREIFPDQHPGGFSQL 240
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 41 YDPILNEYFFDRHPGVFAQI 60
YD L E F D+HPG F+Q+
Sbjct: 225 YDRTLREIFPDQHPGGFSQL 244
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 41 YDPILNEYFFDRHPGVFAQI 60
YD L E F D+HPG F+Q+
Sbjct: 221 YDRTLREIFPDQHPGGFSQL 240
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 41 YDPILNEYFFDRHPGVFAQI 60
YD L E F D+HPG F+Q+
Sbjct: 221 YDRTLREIFPDQHPGGFSQL 240
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 41 YDPILNEYFFDRHPGVFAQI 60
YD L E F D+HPG F+Q+
Sbjct: 221 YDRTLREIFPDQHPGGFSQL 240
>pdb|2C9K|A Chain A, Structure Of The Functional Form Of The
Mosquito-Larvicidal Cry4aa Toxin From Bacillus
Thuringiensis At 2.8 A Resolution
Length = 612
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 22/94 (23%)
Query: 73 TNVCGPLFEEELEFWGL--DSNQVEPCCWSTYSIHRDTQTTLAILD-----------KLD 119
TN C +++ L DSN W+TY+ +R T+ T A+LD K
Sbjct: 194 TNYCVTTYKKGLNLIKTTPDSNLDGNINWNTYNTYR-TKMTTAVLDLVALFPNYDVGKYP 252
Query: 120 IDAEKPTEEEIARMFGYEDA--------YLEDSL 145
I + EI ++ +E++ Y EDSL
Sbjct: 253 IGVQSELTREIYQVLNFEESPYKYYDFQYQEDSL 286
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 41 YDPILNEYFFDRHPGVFAQI 60
YD L E F D+HPG F+Q+
Sbjct: 221 YDRTLREIFPDQHPGGFSQL 240
>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From
Mycobacterium Avium
Length = 267
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 110 TTLAILDKLDIDAEKPTEEEIARMFGYEDA 139
TT A+L++ D DAE+ EE AR+F ++A
Sbjct: 222 TTAAVLERFDRDAERLAEES-ARLFVSDEA 250
>pdb|1RJD|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJG|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
Length = 334
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 16 YETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNV 75
+ +Y TLKK ++ +A+ + P++N + R G+ A IL + + N+
Sbjct: 45 HRSYLITLKKFSRRAFGKVDKAMRSSFPVMNYGTYLRTVGIDAAILEFLVANEKVQVVNL 104
Query: 76 -CG 77
CG
Sbjct: 105 GCG 107
>pdb|3PT1|A Chain A, Structure Of Duf89 From Saccharomyces Cerevisiae
Co-Crystallized With F6p
Length = 471
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 63 YYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDIDA 122
+ +GK+ + + + EL++W LD+N+ + + +H+D Q + ++ K D++
Sbjct: 335 FVSSGKIEFRED---SFWTTELDYWNLDANETK---YHGSILHKDLQKSNLVIFKGDLNY 388
Query: 123 EKPT 126
K T
Sbjct: 389 RKLT 392
>pdb|2OB2|A Chain A, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|B Chain B, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|C Chain C, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
Length = 327
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 16 YETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNV 75
+ +Y TLKK ++ +A+ + P++N + R G+ A IL + + N+
Sbjct: 44 HRSYLITLKKFSRRAFGKVDKAMRSSFPVMNYGTYLRTVGIDAAILEFLVANEKVQVVNL 103
Query: 76 -CG 77
CG
Sbjct: 104 GCG 106
>pdb|2OB1|A Chain A, Ppm1 With 1,8-Ans
pdb|2OB1|B Chain B, Ppm1 With 1,8-Ans
pdb|2OB1|C Chain C, Ppm1 With 1,8-Ans
Length = 319
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 16 YETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNV 75
+ +Y TLKK ++ +A+ + P++N + R G+ A IL + + N+
Sbjct: 36 HRSYLITLKKFSRRAFGKVDKAMRSSFPVMNYGTYLRTVGIDAAILEFLVANEKVQVVNL 95
Query: 76 -CG 77
CG
Sbjct: 96 GCG 98
>pdb|2YKM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Difluoromethylbenzoxazole (Dfmb)
Pyrimidine Thioether Derivative, A Non-Nucleoside Rt
Inhibitor (Nnrti)
Length = 562
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 22/115 (19%)
Query: 13 GIRYE--TYKATLKKIPATRLSRLTEAL-----ANYDPILNEYFFDRHPGVFAQILNYYR 65
GIRY+ K PA S +T+ L N D ++ +Y D + G +I +R
Sbjct: 141 GIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEI-GQHR 199
Query: 66 TGKLHYPTNVCGPLFEEELEFWGLDS----NQVEP-CCWSTYSIHRDTQTTLAIL 115
T K+ + L WGL + +Q EP C W Y +H D T I+
Sbjct: 200 T-KIEE--------LRQHLLRWGLTTPDKKHQKEPPCLWMGYELHPDKWTVQPIV 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,610,945
Number of Sequences: 62578
Number of extensions: 234823
Number of successful extensions: 599
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 551
Number of HSP's gapped (non-prelim): 46
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)