Query psy4757
Match_columns 169
No_of_seqs 234 out of 1154
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 16:54:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3713|consensus 100.0 9.6E-43 2.1E-47 300.4 8.9 154 4-169 30-192 (477)
2 KOG4390|consensus 100.0 3.5E-37 7.6E-42 260.3 4.1 146 3-168 38-184 (632)
3 PF02214 BTB_2: BTB/POZ domain 100.0 3.8E-30 8.1E-35 180.5 5.3 91 7-97 1-94 (94)
4 KOG1545|consensus 99.9 1.3E-28 2.8E-33 206.5 4.5 131 4-169 60-191 (507)
5 KOG2714|consensus 99.9 1.6E-23 3.5E-28 178.6 7.0 100 3-102 9-111 (465)
6 KOG2715|consensus 99.9 2.8E-23 6E-28 158.3 4.0 97 4-101 20-121 (210)
7 KOG2716|consensus 99.8 1.1E-21 2.4E-26 157.5 5.0 97 1-99 1-99 (230)
8 KOG1665|consensus 99.8 3.3E-21 7.1E-26 153.3 6.0 89 3-91 7-98 (302)
9 KOG2723|consensus 99.8 1.1E-19 2.3E-24 145.1 5.7 89 4-92 8-98 (221)
10 smart00225 BTB Broad-Complex, 98.8 5.4E-09 1.2E-13 69.8 4.4 83 7-92 2-85 (90)
11 KOG3840|consensus 98.7 1.6E-08 3.5E-13 84.3 4.7 96 4-99 95-194 (438)
12 PHA03098 kelch-like protein; P 96.3 0.0041 8.8E-08 55.5 3.6 80 6-91 13-92 (534)
13 PF00651 BTB: BTB/POZ domain; 95.5 0.026 5.7E-07 39.2 4.5 87 5-92 11-99 (111)
14 PHA02790 Kelch-like protein; P 93.4 0.062 1.3E-06 47.8 2.8 87 8-99 25-114 (480)
15 PHA02713 hypothetical protein; 92.8 0.09 2E-06 47.7 3.0 82 6-91 27-110 (557)
16 KOG4441|consensus 89.3 0.31 6.7E-06 44.6 2.8 83 6-91 38-121 (571)
17 KOG0783|consensus 82.1 1.2 2.7E-05 42.5 3.0 71 1-72 555-637 (1267)
18 PF02519 Auxin_inducible: Auxi 50.2 35 0.00075 24.0 4.2 57 4-64 38-99 (100)
19 PF12926 MOZART2: Mitotic-spin 49.0 9.1 0.0002 26.5 1.0 19 50-68 39-57 (88)
20 PF12761 End3: Actin cytoskele 39.5 18 0.00039 28.7 1.5 39 51-90 1-43 (195)
21 COG4680 Uncharacterized protei 37.3 30 0.00065 24.3 2.1 17 3-19 53-69 (98)
22 PF09907 DUF2136: Uncharacteri 30.3 45 0.00097 22.3 2.1 15 4-18 36-50 (76)
23 COG1825 RplY Ribosomal protein 30.1 62 0.0014 22.5 2.8 26 4-29 57-82 (93)
24 COG1911 RPL30 Ribosomal protei 30.0 65 0.0014 22.8 2.9 31 57-87 24-56 (100)
25 PF05164 ZapA: Cell division p 28.3 62 0.0013 21.3 2.6 14 6-19 1-14 (89)
26 PF12450 vWF_A: von Willebrand 27.0 83 0.0018 22.3 3.0 45 45-92 28-72 (99)
27 cd00495 Ribosomal_L25_TL5_CTC 25.1 77 0.0017 21.4 2.6 26 4-29 56-81 (91)
28 PF01386 Ribosomal_L25p: Ribos 24.8 42 0.0009 22.8 1.2 27 3-29 54-80 (88)
29 smart00512 Skp1 Found in Skp1 21.2 1.1E+02 0.0023 21.1 2.8 55 12-68 10-65 (104)
30 PLN00219 predicted protein; Pr 21.0 41 0.00088 21.1 0.5 18 51-68 3-22 (65)
31 PF08097 Toxin_26: Conotoxin T 21.0 35 0.00076 14.3 0.1 6 94-99 6-11 (11)
32 PHA01811 hypothetical protein 20.1 1.2E+02 0.0026 19.8 2.5 17 1-17 1-17 (78)
No 1
>KOG3713|consensus
Probab=100.00 E-value=9.6e-43 Score=300.42 Aligned_cols=154 Identities=49% Similarity=0.899 Sum_probs=130.7
Q ss_pred CCeEEEEECcEEEEecHHHHhcCCCcchhhhhhc---------CCCCCCCCceEEecCCCCcHHHHHHhhhcCcccCCCC
Q psy4757 4 EHRIILNVGGIRYETYKATLKKIPATRLSRLTEA---------LANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTN 74 (169)
Q Consensus 4 ~~~v~lNVGG~~f~t~~~tL~~~p~s~l~~l~~~---------~~~~~~~~~e~f~DRdp~~F~~IL~ylr~g~l~~p~~ 74 (169)
+++|+|||||++|++.++||.++|.|+|++|..+ |++||+.++||||||||.+|.+||||||||+||+|.+
T Consensus 30 ~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~P~~F~~Vl~fYrtGkLH~p~~ 109 (477)
T KOG3713|consen 30 DRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRHPGAFAYVLNFYRTGKLHVPAD 109 (477)
T ss_pred CcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeeccChHHHHHHHHHHhcCeeccccc
Confidence 4599999999999999999999999999999772 6899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhCCCCcCcCcccccccccccchHHHHHHhhhcccccCCCcHHHHHHhhCcchhhhccchhHHhhhHHH
Q psy4757 75 VCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPK 154 (169)
Q Consensus 75 ~~~~~~~~E~~f~~l~~~~l~~CC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 154 (169)
+|...|.+|++||||++.++++|||..|.+++++..+.... .+.++++..+++|.++ ..++|+++|+|
T Consensus 110 vC~~~F~eEL~yWgI~~~~le~CC~~~~~~~~ee~~e~~~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~r~r 177 (477)
T KOG3713|consen 110 VCPLSFEEELDYWGIDEAHLESCCWMRYRQRREELLEELDR-------PDPDEEELREREGPEF-----DGGRCGRLRRR 177 (477)
T ss_pred cchHHHHHHHHHhCCChhhhhHHhHHHHhhcHHHHhhhhcc-------cCchhhhHHhhccccc-----cCCChhhHHHH
Confidence 99999999999999999999999999999999654332211 0122333334444433 24677889999
Q ss_pred HHccccCCCCCCCCC
Q psy4757 155 VWSLFDEPYSSLGAK 169 (169)
Q Consensus 155 iW~~~E~P~sS~~Ak 169 (169)
||++||+|+||.+||
T Consensus 178 lW~~~E~P~SS~~Ak 192 (477)
T KOG3713|consen 178 LWALLENPGSSLAAK 192 (477)
T ss_pred HHHHhcCCCcchHHH
Confidence 999999999999986
No 2
>KOG4390|consensus
Probab=100.00 E-value=3.5e-37 Score=260.27 Aligned_cols=146 Identities=38% Similarity=0.720 Sum_probs=119.6
Q ss_pred CCCeEEEEECcEEEEecHHHHhcCCCcchhhhhhcCCCCCCCCceEEecCCCCcHHHHHHhhhcCcccCCCCCChhHHHH
Q psy4757 3 GEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEE 82 (169)
Q Consensus 3 ~~~~v~lNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~~e~f~DRdp~~F~~IL~ylr~g~l~~p~~~~~~~~~~ 82 (169)
.++.|.|||+|++|+|++.||.+||+|+||+-. ...+|+.+++||||||||++|+|||||||||+||.|...|+.++-+
T Consensus 38 ~De~lvlNvSGrRFeTWknTLeryPdTLLGSsE-keFFy~~dt~eYFFDRDPdiFRhvLnFYRTGkLHyPR~ECi~AyDe 116 (632)
T KOG4390|consen 38 QDELLVLNVSGRRFETWKNTLERYPDTLLGSSE-KEFFYDEDTGEYFFDRDPDIFRHVLNFYRTGKLHYPRHECISAYDE 116 (632)
T ss_pred cCcEEEEeccccchhHHHhHHHhCchhhhCCcc-hheeecCCcccccccCChHHHHHHHHHhhcCcccCchHHHHHHhhh
Confidence 467899999999999999999999999999843 3567999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcCcCcccccccccccchHHH-HHHhhhcccccCCCcHHHHHHhhCcchhhhccchhHHhhhHHHHHccccC
Q psy4757 83 ELEFWGLDSNQVEPCCWSTYSIHRDTQTT-LAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKVWSLFDE 161 (169)
Q Consensus 83 E~~f~~l~~~~l~~CC~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~iW~~~E~ 161 (169)
|+.||||-++.+.+||++.|.++|.+..+ +...+. .+ .+ |- +. .+.+ -.+|.+||..|||
T Consensus 117 ELaF~Gl~PeligDCCyEeYkDrkrENaERL~dd~~---------~e-~a---g~-~~-~p~~----ls~rq~mWrAFEN 177 (632)
T KOG4390|consen 117 ELAFYGLVPELIGDCCYEEYKDRKRENAERLQDDED---------AE-NA---GG-PA-LPAG----LSLRQRMWRAFEN 177 (632)
T ss_pred hhhHhcccHHHHhhhhhHHHhhhhhhhHHHhhchhh---------hh-hc---CC-CC-Cccc----chHHHHHHHHhcC
Confidence 99999999999999999999998866432 221110 00 00 00 00 0111 3679999999999
Q ss_pred CCCCCCC
Q psy4757 162 PYSSLGA 168 (169)
Q Consensus 162 P~sS~~A 168 (169)
|++|.+|
T Consensus 178 PHTst~A 184 (632)
T KOG4390|consen 178 PHTSTAA 184 (632)
T ss_pred CCcchhh
Confidence 9999877
No 3
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=99.96 E-value=3.8e-30 Score=180.54 Aligned_cols=91 Identities=46% Similarity=0.772 Sum_probs=79.3
Q ss_pred EEEEECcEEEEecHHHHhcCCCcchhhhhhcC--CCCCCCCceEEecCCCCcHHHHHHhhhc-CcccCCCCCChhHHHHH
Q psy4757 7 IILNVGGIRYETYKATLKKIPATRLSRLTEAL--ANYDPILNEYFFDRHPGVFAQILNYYRT-GKLHYPTNVCGPLFEEE 83 (169)
Q Consensus 7 v~lNVGG~~f~t~~~tL~~~p~s~l~~l~~~~--~~~~~~~~e~f~DRdp~~F~~IL~ylr~-g~l~~p~~~~~~~~~~E 83 (169)
|+|||||++|+|+++||.++|+|+|+.+++.. ..+++++++|||||||.+|++||+|||+ |+++.|.+.+...|.+|
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~E 80 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIPDEICLEELLEE 80 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB---TTS-HHHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCCCCchhHHHHHHH
Confidence 79999999999999999999999999999853 5677889999999999999999999999 88999888999999999
Q ss_pred HHHhCCCCcCcCcc
Q psy4757 84 LEFWGLDSNQVEPC 97 (169)
Q Consensus 84 ~~f~~l~~~~l~~C 97 (169)
|+||+|....|+.|
T Consensus 81 a~fy~l~~l~i~~c 94 (94)
T PF02214_consen 81 AEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHT-HHHHBHHC
T ss_pred HHHcCCCccccCCC
Confidence 99999999888877
No 4
>KOG1545|consensus
Probab=99.95 E-value=1.3e-28 Score=206.50 Aligned_cols=131 Identities=35% Similarity=0.617 Sum_probs=109.7
Q ss_pred CCeEEEEECcEEEEecHHHHhcCCCcchhhhhhcCCCCCCCCceEEecCCCCcHHHHHHhhhc-CcccCCCCCChhHHHH
Q psy4757 4 EHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRT-GKLHYPTNVCGPLFEE 82 (169)
Q Consensus 4 ~~~v~lNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~~e~f~DRdp~~F~~IL~ylr~-g~l~~p~~~~~~~~~~ 82 (169)
+++|+|||+|.+|+|..+||.++|+|+||...++..++|+.++|||||||...|..||.||++ |+|..|.+|+.+.|.+
T Consensus 60 ~ervvINisGlRFeTql~TL~qfP~TLLGDp~kR~rfFdplrNEyFFDRnRpSFdaILYyYQSGGRlrRPvnVPlDiF~e 139 (507)
T KOG1545|consen 60 CERVVINISGLRFETQLKTLAQFPNTLLGDPAKRMRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFLE 139 (507)
T ss_pred ccEEEEEeccceehHHHHHHhhCchhhcCCHHHhcccccccchhhcccCCCCccceEEEEeecCceecCCccccHHHHHH
Confidence 489999999999999999999999999999988888999999999999999999999999998 5899999999999999
Q ss_pred HHHHhCCCCcCcCcccccccccccchHHHHHHhhhcccccCCCcHHHHHHhhCcchhhhccchhHHhhhHHHHHccccCC
Q psy4757 83 ELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKVWSLFDEP 162 (169)
Q Consensus 83 E~~f~~l~~~~l~~CC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~iW~~~E~P 162 (169)
|+.||+|.++.++ .....+....+++.+ .+. +.++|++|.+||+|
T Consensus 140 EirFyqlG~eame---------------~FredEG~~~~eE~p----------------lP~----n~fqRqvWlLfEYP 184 (507)
T KOG1545|consen 140 EIRFYQLGDEAME---------------RFREDEGFIKPEERP----------------LPR----NEFQRQVWLLFEYP 184 (507)
T ss_pred HHHHHHhhHHHHH---------------HHHhhcCCCCccccc----------------CCc----chHHhhhhheeecc
Confidence 9999999885552 222222111111111 111 68899999999999
Q ss_pred CCCCCCC
Q psy4757 163 YSSLGAK 169 (169)
Q Consensus 163 ~sS~~Ak 169 (169)
.||.+||
T Consensus 185 eSS~~AR 191 (507)
T KOG1545|consen 185 ESSGPAR 191 (507)
T ss_pred cccCCee
Confidence 9999986
No 5
>KOG2714|consensus
Probab=99.89 E-value=1.6e-23 Score=178.63 Aligned_cols=100 Identities=33% Similarity=0.450 Sum_probs=83.2
Q ss_pred CCCeEEEEECcEEEEecHHHHhcCC-CcchhhhhhcC-CCCCCCCceEEecCCCCcHHHHHHhhhcCcccCCCCCChhHH
Q psy4757 3 GEHRIILNVGGIRYETYKATLKKIP-ATRLSRLTEAL-ANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLF 80 (169)
Q Consensus 3 ~~~~v~lNVGG~~f~t~~~tL~~~p-~s~l~~l~~~~-~~~~~~~~e~f~DRdp~~F~~IL~ylr~g~l~~p~~~~~~~~ 80 (169)
++++|+|||||++|+|+++||+..| +|+|+.|+++. ....++.+.+||||||++|..||||||||.|..+.......+
T Consensus 9 ~~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~ll 88 (465)
T KOG2714|consen 9 SGDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLL 88 (465)
T ss_pred CCceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhh
Confidence 4789999999999999999999999 99999999753 234568899999999999999999999999998665545566
Q ss_pred HHHHHHhCCCCcCc-Cccccccc
Q psy4757 81 EEELEFWGLDSNQV-EPCCWSTY 102 (169)
Q Consensus 81 ~~E~~f~~l~~~~l-~~CC~~~~ 102 (169)
.+||.||||.+... -.-|++.|
T Consensus 89 hdEA~fYGl~~llrrl~~~~~~F 111 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLRRLTLCEELF 111 (465)
T ss_pred hhhhhhcCcHHHHHHhhcCcccc
Confidence 66999999998643 23455444
No 6
>KOG2715|consensus
Probab=99.87 E-value=2.8e-23 Score=158.31 Aligned_cols=97 Identities=31% Similarity=0.368 Sum_probs=83.8
Q ss_pred CCeEEEEECcEEEEecHHHHhcCCCcchhhhhhcCC---CCCCCCceEEecCCCCcHHHHHHhhhcCcccCCCCCChhHH
Q psy4757 4 EHRIILNVGGIRYETYKATLKKIPATRLSRLTEALA---NYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLF 80 (169)
Q Consensus 4 ~~~v~lNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~---~~~~~~~e~f~DRdp~~F~~IL~ylr~g~l~~p~~~~~~~~ 80 (169)
+.+|+|||||+.|.|+++||.+.|.|+|.+++++.. .-.+++|.|||||||..|..||||+|.|+|.+.. +.....
T Consensus 20 s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~-l~eeGv 98 (210)
T KOG2715|consen 20 SLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK-LSEEGV 98 (210)
T ss_pred eEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh-hhhhcc
Confidence 369999999999999999999999999999988642 3356899999999999999999999999998866 778889
Q ss_pred HHHHHHhCCCCc--CcCcccccc
Q psy4757 81 EEELEFWGLDSN--QVEPCCWST 101 (169)
Q Consensus 81 ~~E~~f~~l~~~--~l~~CC~~~ 101 (169)
++||+||+++++ .+..|.+.+
T Consensus 99 L~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 99 LEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred chhhhccCChHHHHHHHHHHHHH
Confidence 999999999964 455565543
No 7
>KOG2716|consensus
Probab=99.84 E-value=1.1e-21 Score=157.51 Aligned_cols=97 Identities=31% Similarity=0.404 Sum_probs=81.8
Q ss_pred CCCCCeEEEEECcEEEEecHHHHhcCCCcchhhhhhcCC-CCCCCCceEEecCCCCcHHHHHHhhhcCcccCCCCCCh-h
Q psy4757 1 MDGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALA-NYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCG-P 78 (169)
Q Consensus 1 ~~~~~~v~lNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~-~~~~~~~e~f~DRdp~~F~~IL~ylr~g~l~~p~~~~~-~ 78 (169)
|..++.|+|||||+.|.|+++||+++ +++|..|++... .-.+.+|.|||||+|.+|..||||+|+|.+.+|.+... .
T Consensus 1 ~~~~~~vkLnvGG~~F~Tsk~TLtk~-dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~ 79 (230)
T KOG2716|consen 1 LSMSETVKLNVGGTIFKTSKSTLTKF-DGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELK 79 (230)
T ss_pred CCccceEEEecCCeEEEeehhhhhhh-hhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHH
Confidence 45678999999999999999999994 788898887642 23456789999999999999999999999999987653 6
Q ss_pred HHHHHHHHhCCCCcCcCcccc
Q psy4757 79 LFEEELEFWGLDSNQVEPCCW 99 (169)
Q Consensus 79 ~~~~E~~f~~l~~~~l~~CC~ 99 (169)
.++.||+||.|+.+ ++.|..
T Consensus 80 El~~EA~fYlL~~L-v~~C~~ 99 (230)
T KOG2716|consen 80 ELLREAEFYLLDGL-VELCQS 99 (230)
T ss_pred HHHHHHHHhhHHHH-HHHHHH
Confidence 89999999999984 555544
No 8
>KOG1665|consensus
Probab=99.83 E-value=3.3e-21 Score=153.34 Aligned_cols=89 Identities=26% Similarity=0.348 Sum_probs=80.3
Q ss_pred CCCeEEEEECcEEEEecHHHHh-cCCCcchhhhhhcCC--CCCCCCceEEecCCCCcHHHHHHhhhcCcccCCCCCChhH
Q psy4757 3 GEHRIILNVGGIRYETYKATLK-KIPATRLSRLTEALA--NYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPL 79 (169)
Q Consensus 3 ~~~~v~lNVGG~~f~t~~~tL~-~~p~s~l~~l~~~~~--~~~~~~~e~f~DRdp~~F~~IL~ylr~g~l~~p~~~~~~~ 79 (169)
.+.+|+|||||++|.|+.+||. |.|+|+|+.||+... ...+.+|.|||||+|.+|++||||||.|.+....++....
T Consensus 7 ~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lg 86 (302)
T KOG1665|consen 7 LSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLG 86 (302)
T ss_pred hhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHH
Confidence 4578999999999999999997 889999999998743 2356789999999999999999999999998888888889
Q ss_pred HHHHHHHhCCCC
Q psy4757 80 FEEELEFWGLDS 91 (169)
Q Consensus 80 ~~~E~~f~~l~~ 91 (169)
+++||.||+|-.
T Consensus 87 vLeeArff~i~s 98 (302)
T KOG1665|consen 87 VLEEARFFQILS 98 (302)
T ss_pred HHHHhhHHhhHh
Confidence 999999999976
No 9
>KOG2723|consensus
Probab=99.79 E-value=1.1e-19 Score=145.14 Aligned_cols=89 Identities=31% Similarity=0.462 Sum_probs=79.9
Q ss_pred CCeEEEEECcEEEEecHHHHhcCCCcchhhhhhcC-CCCCCCCceEEecCCCCcHHHHHHhhhcCcccCCCCCC-hhHHH
Q psy4757 4 EHRIILNVGGIRYETYKATLKKIPATRLSRLTEAL-ANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVC-GPLFE 81 (169)
Q Consensus 4 ~~~v~lNVGG~~f~t~~~tL~~~p~s~l~~l~~~~-~~~~~~~~e~f~DRdp~~F~~IL~ylr~g~l~~p~~~~-~~~~~ 81 (169)
..+|.|||||+.|+|+..||.++|+|+|++|+... .-.++..+.||||||+.+|++||+|||+..+.+|.+.. ...+.
T Consensus 8 ~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~ 87 (221)
T KOG2723|consen 8 PDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFIDRDGFLFRYVLDYLRTKALLLPEDFAEVERLV 87 (221)
T ss_pred CCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEcCCcchHHHHHHHhcccccccchhhhhHHHHH
Confidence 57999999999999999999999999999999853 23456789999999999999999999998888998876 57899
Q ss_pred HHHHHhCCCCc
Q psy4757 82 EELEFWGLDSN 92 (169)
Q Consensus 82 ~E~~f~~l~~~ 92 (169)
+||+||+|...
T Consensus 88 rEA~f~~l~~~ 98 (221)
T KOG2723|consen 88 REAEFFQLEAP 98 (221)
T ss_pred HHHHHHccccH
Confidence 99999999953
No 10
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=98.82 E-value=5.4e-09 Score=69.77 Aligned_cols=83 Identities=23% Similarity=0.307 Sum_probs=64.9
Q ss_pred EEEEECcEEEEecHHHHhcCCCcchhhhhhcCCCCCCCCceE-EecCCCCcHHHHHHhhhcCcccCCCCCChhHHHHHHH
Q psy4757 7 IILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEY-FFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEELE 85 (169)
Q Consensus 7 v~lNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~~e~-f~DRdp~~F~~IL~ylr~g~l~~p~~~~~~~~~~E~~ 85 (169)
|+|+|||+.|.+.+..|...+. ++..++..... ......+ +.|.++..|..||+|+.+|++.++.. ....+...|.
T Consensus 2 v~i~v~~~~~~~h~~iL~~~s~-~f~~~~~~~~~-~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~-~~~~l~~~a~ 78 (90)
T smart00225 2 VTLVVGGKKFKAHKAVLAACSP-YFKALFSGDFK-ESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEE-NVEELLELAD 78 (90)
T ss_pred eEEEECCEEEehHHHHHhhcCH-HHHHHHcCCCc-cCCCCEEEecCCCHHHHHHHHHeecCceeecCHH-HHHHHHHHHH
Confidence 6799999999999999998864 45666653221 1133444 55899999999999999999888765 5678999999
Q ss_pred HhCCCCc
Q psy4757 86 FWGLDSN 92 (169)
Q Consensus 86 f~~l~~~ 92 (169)
||+++..
T Consensus 79 ~~~~~~l 85 (90)
T smart00225 79 YLQIPGL 85 (90)
T ss_pred HHCcHHH
Confidence 9999763
No 11
>KOG3840|consensus
Probab=98.70 E-value=1.6e-08 Score=84.32 Aligned_cols=96 Identities=22% Similarity=0.330 Sum_probs=82.1
Q ss_pred CCeEEEEECcEEEEecHHHHhcCCCcchhhhhhcCCCC--CCCCceEEec--CCCCcHHHHHHhhhcCcccCCCCCChhH
Q psy4757 4 EHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANY--DPILNEYFFD--RHPGVFAQILNYYRTGKLHYPTNVCGPL 79 (169)
Q Consensus 4 ~~~v~lNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~--~~~~~e~f~D--Rdp~~F~~IL~ylr~g~l~~p~~~~~~~ 79 (169)
.++|.+-|.|++|.+++..|+..|.|+|+.|+.....+ ..++|||=+- -...+|+.||+||++|.+.+|..+.+..
T Consensus 95 ~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpE 174 (438)
T KOG3840|consen 95 GDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSE 174 (438)
T ss_pred CcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHH
Confidence 47899999999999999999999999999999875433 2467888763 3456899999999999999999999999
Q ss_pred HHHHHHHhCCCCcCcCcccc
Q psy4757 80 FEEELEFWGLDSNQVEPCCW 99 (169)
Q Consensus 80 ~~~E~~f~~l~~~~l~~CC~ 99 (169)
|.+-.+|.-|+-....--|+
T Consensus 175 LrEACDYLlipF~a~TvkCq 194 (438)
T KOG3840|consen 175 LREACDYLLVPFNAQTVKCQ 194 (438)
T ss_pred HHhhcceEEeecccceeeeh
Confidence 99999999999877666666
No 12
>PHA03098 kelch-like protein; Provisional
Probab=96.25 E-value=0.0041 Score=55.51 Aligned_cols=80 Identities=19% Similarity=0.191 Sum_probs=61.0
Q ss_pred eEEEEECcEEEEecHHHHhcCCCcchhhhhhcCCCCCCCCceEEecCCCCcHHHHHHhhhcCcccCCCCCChhHHHHHHH
Q psy4757 6 RIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEELE 85 (169)
Q Consensus 6 ~v~lNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~~e~f~DRdp~~F~~IL~ylr~g~l~~p~~~~~~~~~~E~~ 85 (169)
.|+++|+|+.|...+..|...... |..|+.... . .+++-+.=++..|+.||+|+-+|++.+..+- ...++.=|.
T Consensus 13 ~l~~~~~~~~~~~Hk~vLaa~S~y-F~~mf~~~~--~--~~~i~l~~~~~~~~~~l~y~Ytg~~~i~~~~-~~~ll~~A~ 86 (534)
T PHA03098 13 SIIIVNGGGIIKVHKIILSSSSEY-FKKMFKNNF--K--ENEINLNIDYDSFNEVIKYIYTGKINITSNN-VKDILSIAN 86 (534)
T ss_pred EEEEEcCCEEEEeHHHHHHhhhHH-HHHHHhCCC--C--CceEEecCCHHHHHHHHHHhcCCceEEcHHH-HHHHHHHHH
Confidence 455566999999999999987544 566776432 2 4555553399999999999999999875543 667888999
Q ss_pred HhCCCC
Q psy4757 86 FWGLDS 91 (169)
Q Consensus 86 f~~l~~ 91 (169)
+|+|+.
T Consensus 87 ~l~~~~ 92 (534)
T PHA03098 87 YLIIDF 92 (534)
T ss_pred HhCcHH
Confidence 999986
No 13
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=95.52 E-value=0.026 Score=39.16 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=61.3
Q ss_pred CeEEEEEC-cEEEEecHHHHhcCCCcchhhhhhcCCCCCCCCceEE-ecCCCCcHHHHHHhhhcCcccCCCCCChhHHHH
Q psy4757 5 HRIILNVG-GIRYETYKATLKKIPATRLSRLTEALANYDPILNEYF-FDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEE 82 (169)
Q Consensus 5 ~~v~lNVG-G~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~~e~f-~DRdp~~F~~IL~ylr~g~l~~p~~~~~~~~~~ 82 (169)
.-|+|.|| |..|.+.+..|.... .+|..++...........++- -|-++..|..||+|+-+|.+..+..-....+..
T Consensus 11 ~D~~i~v~d~~~~~vhk~iL~~~S-~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~ 89 (111)
T PF00651_consen 11 SDVTIRVGDGKTFYVHKNILAARS-PYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSDENVEELLE 89 (111)
T ss_dssp --EEEEETTTEEEEE-HHHHHHHB-HHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHHH
T ss_pred CCEEEEECCCEEEeechhhhhccc-hhhhhcccccccccccccccccccccccccccccccccCCcccCCHHHHHHHHHH
Confidence 45889999 999999999997653 456777765411111222443 357789999999999999987762334678888
Q ss_pred HHHHhCCCCc
Q psy4757 83 ELEFWGLDSN 92 (169)
Q Consensus 83 E~~f~~l~~~ 92 (169)
=|.+|+++..
T Consensus 90 lA~~~~~~~L 99 (111)
T PF00651_consen 90 LADKLQIPEL 99 (111)
T ss_dssp HHHHTTBHHH
T ss_pred HHHHhCcHHH
Confidence 9999999863
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=93.42 E-value=0.062 Score=47.80 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=62.3
Q ss_pred EEEECcEEEEecHHHHhcCCCcchhhhhhcCCCCCCCCceEE---ecCCCCcHHHHHHhhhcCcccCCCCCChhHHHHHH
Q psy4757 8 ILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYF---FDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEEL 84 (169)
Q Consensus 8 ~lNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~~e~f---~DRdp~~F~~IL~ylr~g~l~~p~~~~~~~~~~E~ 84 (169)
.|-|.|..|...|..|..... .|..||... +...+.++. ++=++..++.||+|.-||++.+..+ .+..+++-|
T Consensus 25 ~~~~~~~~~~~HR~VLAa~S~-YFraMF~~~--~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~-nV~~ll~aA 100 (480)
T PHA02790 25 IIEAIGGNIIVNSTILKKLSP-YFRTHLRQK--YTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSH-NVVNLLRAS 100 (480)
T ss_pred EEEEcCcEEeeehhhhhhcCH-HHHHHhcCC--ccccccceEEEecCcCHHHHHHHHHhheeeeEEEecc-cHHHHHHHH
Confidence 355677799999999988754 356677642 222233343 2789999999999999999988554 577888899
Q ss_pred HHhCCCCcCcCcccc
Q psy4757 85 EFWGLDSNQVEPCCW 99 (169)
Q Consensus 85 ~f~~l~~~~l~~CC~ 99 (169)
.+++|+.. ++.||.
T Consensus 101 ~~Lqi~~v-~~~C~~ 114 (480)
T PHA02790 101 ILTSVEFI-IYTCIN 114 (480)
T ss_pred HHhChHHH-HHHHHH
Confidence 99998752 444543
No 15
>PHA02713 hypothetical protein; Provisional
Probab=92.82 E-value=0.09 Score=47.74 Aligned_cols=82 Identities=11% Similarity=0.120 Sum_probs=59.4
Q ss_pred eEEEEEC-cEEEEecHHHHhcCCCcchhhhhhcCCCCCCCCceEEe-cCCCCcHHHHHHhhhcCcccCCCCCChhHHHHH
Q psy4757 6 RIILNVG-GIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFF-DRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEE 83 (169)
Q Consensus 6 ~v~lNVG-G~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~~e~f~-DRdp~~F~~IL~ylr~g~l~~p~~~~~~~~~~E 83 (169)
-|+|.|+ |+.|...+..|...... |..||...-.-....+++-+ +=++..|+.||+|+-||++ .. .....++.-
T Consensus 27 DV~L~v~~~~~f~~Hr~vLaa~S~Y-F~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~i--~~-~nv~~ll~a 102 (557)
T PHA02713 27 DVIITIGDGEEIKAHKTILAAGSKY-FRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRHI--SS-MNVIDVLKC 102 (557)
T ss_pred CEEEEeCCCCEEeehHHHHhhcCHH-HHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCCC--CH-HHHHHHHHH
Confidence 4789998 89999999999976544 56677642110112355644 6799999999999999985 22 235677788
Q ss_pred HHHhCCCC
Q psy4757 84 LEFWGLDS 91 (169)
Q Consensus 84 ~~f~~l~~ 91 (169)
|.+++|+.
T Consensus 103 A~~lqi~~ 110 (557)
T PHA02713 103 ADYLLIDD 110 (557)
T ss_pred HHHHCHHH
Confidence 89998875
No 16
>KOG4441|consensus
Probab=89.29 E-value=0.31 Score=44.57 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=63.3
Q ss_pred eEEEEECcEEEEecHHHHhcCCCcchhhhhhcCCCCCCCCceE-EecCCCCcHHHHHHhhhcCcccCCCCCChhHHHHHH
Q psy4757 6 RIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEY-FFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEEL 84 (169)
Q Consensus 6 ~v~lNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~~e~-f~DRdp~~F~~IL~ylr~g~l~~p~~~~~~~~~~E~ 84 (169)
-|.|-|||+.|...|-.|+.... .+..||.... -.....++ +.+=+|..+..|++|.-||++.+-. -++..|++-|
T Consensus 38 Dv~L~v~~~~~~aHR~VLAa~S~-YFraMFt~~l-~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~-~nVq~ll~aA 114 (571)
T KOG4441|consen 38 DVTLLVGDREFPAHRVVLAACSP-YFRAMFTSGL-KESKQKEINLEGVDPETLELLLDYAYTGKLEISE-DNVQELLEAA 114 (571)
T ss_pred eEEEEECCeeechHHHHHHhccH-HHHHHhcCCc-ccccceEEEEecCCHHHHHHHHHHhhcceEEech-HhHHHHHHHH
Confidence 48899999999999999987754 3566676421 12233444 3468999999999999999998743 3578889999
Q ss_pred HHhCCCC
Q psy4757 85 EFWGLDS 91 (169)
Q Consensus 85 ~f~~l~~ 91 (169)
.+++|..
T Consensus 115 ~~lQi~~ 121 (571)
T KOG4441|consen 115 SLLQIPE 121 (571)
T ss_pred HHhhhHH
Confidence 9999986
No 17
>KOG0783|consensus
Probab=82.15 E-value=1.2 Score=42.53 Aligned_cols=71 Identities=24% Similarity=0.246 Sum_probs=49.7
Q ss_pred CCCCCeEEEEECcEEEEecHHHHhcCCCcchhhhhhcCC-------CC----CCCCceEEe-cCCCCcHHHHHHhhhcCc
Q psy4757 1 MDGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALA-------NY----DPILNEYFF-DRHPGVFAQILNYYRTGK 68 (169)
Q Consensus 1 ~~~~~~v~lNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~-------~~----~~~~~e~f~-DRdp~~F~~IL~ylr~g~ 68 (169)
||.=.-|++.|||..|...+-.|.... ++|..|+.... -| +.....+|+ |-+|.+|++||+|+-+..
T Consensus 555 ~ds~hDVtf~vg~~~F~aHKfIl~~rs-~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 555 KDSFHDVTFYVGTSMFHAHKFILCARS-SFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDT 633 (1267)
T ss_pred ccccceEEEEecCeecccceEEEEecc-HHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhccc
Confidence 455567999999999999888776553 45666654311 11 222345666 478999999999999987
Q ss_pred ccCC
Q psy4757 69 LHYP 72 (169)
Q Consensus 69 l~~p 72 (169)
+--|
T Consensus 634 ~~~P 637 (1267)
T KOG0783|consen 634 LLSP 637 (1267)
T ss_pred ccCC
Confidence 6556
No 18
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=50.24 E-value=35 Score=24.03 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=41.1
Q ss_pred CCeEEEEECc--EEEEecHHHHhcCCCcchhhhhhcC---CCCCCCCceEEecCCCCcHHHHHHhh
Q psy4757 4 EHRIILNVGG--IRYETYKATLKKIPATRLSRLTEAL---ANYDPILNEYFFDRHPGVFAQILNYY 64 (169)
Q Consensus 4 ~~~v~lNVGG--~~f~t~~~tL~~~p~s~l~~l~~~~---~~~~~~~~e~f~DRdp~~F~~IL~yl 64 (169)
...+.+-||. ++|.+..+.|.. | +|..|+... ..|+. .|.+.|--|..+|++||..+
T Consensus 38 ~G~~~VyVG~~~~Rfvvp~~~L~h-p--~f~~LL~~aeeEfG~~~-~G~l~iPC~~~~Fe~~l~~l 99 (100)
T PF02519_consen 38 KGHFAVYVGEERRRFVVPVSYLNH-P--LFQELLEQAEEEFGFDQ-DGPLTIPCDVVLFEHLLWLL 99 (100)
T ss_pred CCeEEEEeCccceEEEechHHcCc-h--hHHHHHHHHhhhcCcCC-CCcEEeeCCHHHHHHHHHHh
Confidence 3467788885 889999888754 3 455655432 22333 78899999999999999865
No 19
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=49.05 E-value=9.1 Score=26.53 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=16.1
Q ss_pred ecCCCCcHHHHHHhhhcCc
Q psy4757 50 FDRHPGVFAQILNYYRTGK 68 (169)
Q Consensus 50 ~DRdp~~F~~IL~ylr~g~ 68 (169)
+.=||++|++||+.++.+.
T Consensus 39 v~~dp~VFriildLL~~nV 57 (88)
T PF12926_consen 39 VPMDPEVFRIILDLLRLNV 57 (88)
T ss_pred CCcChHHHHHHHHHHHcCC
Confidence 5569999999999999743
No 20
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.49 E-value=18 Score=28.74 Aligned_cols=39 Identities=31% Similarity=0.418 Sum_probs=29.5
Q ss_pred cCCCC-cHHHHHHhhhcCcccCCCCCCh---hHHHHHHHHhCCC
Q psy4757 51 DRHPG-VFAQILNYYRTGKLHYPTNVCG---PLFEEELEFWGLD 90 (169)
Q Consensus 51 DRdp~-~F~~IL~ylr~g~l~~p~~~~~---~~~~~E~~f~~l~ 90 (169)
|+||. +|-||||+--.|. .+|..|+. ..|..|--=|.|.
T Consensus 1 dKD~~L~FLHiLnqR~~G~-rIPr~vPasLrasf~k~~i~Ydl~ 43 (195)
T PF12761_consen 1 DKDQCLYFLHILNQRNDGY-RIPREVPASLRASFEKEQIDYDLN 43 (195)
T ss_pred CCcchhhHHHHHhccccCC-cCCccCCHHHHHHHhcCCcCcccc
Confidence 56665 4999999877764 56888876 4687887778887
No 21
>COG4680 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.34 E-value=30 Score=24.27 Aligned_cols=17 Identities=24% Similarity=0.725 Sum_probs=13.7
Q ss_pred CCCeEEEEECcEEEEec
Q psy4757 3 GEHRIILNVGGIRYETY 19 (169)
Q Consensus 3 ~~~~v~lNVGG~~f~t~ 19 (169)
.++++++||||-.+..-
T Consensus 53 ~Dnr~Vfdi~GN~yRLI 69 (98)
T COG4680 53 LDNRVVFDIGGNKYRLI 69 (98)
T ss_pred ccceEEEEcCCCEEEEE
Confidence 46899999999877654
No 22
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=30.32 E-value=45 Score=22.32 Aligned_cols=15 Identities=33% Similarity=0.930 Sum_probs=12.4
Q ss_pred CCeEEEEECcEEEEe
Q psy4757 4 EHRIILNVGGIRYET 18 (169)
Q Consensus 4 ~~~v~lNVGG~~f~t 18 (169)
+.++++||||-.|.+
T Consensus 36 ~~~~vFnI~GN~yRl 50 (76)
T PF09907_consen 36 NNRVVFNIGGNKYRL 50 (76)
T ss_pred CCEEEEEcCCCcEEE
Confidence 678999999977765
No 23
>COG1825 RplY Ribosomal protein L25 (general stress protein Ctc) [Translation, ribosomal structure and biogenesis]
Probab=30.13 E-value=62 Score=22.48 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.3
Q ss_pred CCeEEEEECcEEEEecHHHHhcCCCc
Q psy4757 4 EHRIILNVGGIRYETYKATLKKIPAT 29 (169)
Q Consensus 4 ~~~v~lNVGG~~f~t~~~tL~~~p~s 29 (169)
+..+.|.|+|+.+.+-...+..+|-+
T Consensus 57 ~~v~~l~v~g~~~~Vlvkd~Q~~p~~ 82 (93)
T COG1825 57 STVITLEVDGKEIKVLVKDVQRHPLT 82 (93)
T ss_pred ceEEEEEECCeEEEEEehhhhhCccc
Confidence 57899999999999999999999855
No 24
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=30.01 E-value=65 Score=22.79 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=23.8
Q ss_pred HHHHHHhhhcCc--ccCCCCCChhHHHHHHHHh
Q psy4757 57 FAQILNYYRTGK--LHYPTNVCGPLFEEELEFW 87 (169)
Q Consensus 57 F~~IL~ylr~g~--l~~p~~~~~~~~~~E~~f~ 87 (169)
|..-+.+++.|+ +.+-..-|+..+.++++||
T Consensus 24 ~k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyY 56 (100)
T COG1911 24 SKRTIKSLKLGKAKLIIIASNCPKELKEDIEYY 56 (100)
T ss_pred hHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHH
Confidence 455678888875 5555666788999999999
No 25
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=28.34 E-value=62 Score=21.34 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=11.1
Q ss_pred eEEEEECcEEEEec
Q psy4757 6 RIILNVGGIRYETY 19 (169)
Q Consensus 6 ~v~lNVGG~~f~t~ 19 (169)
.|.|+|+|+.|...
T Consensus 1 ~V~v~I~G~~y~i~ 14 (89)
T PF05164_consen 1 QVKVTILGREYRIK 14 (89)
T ss_dssp -EEEEETTEEEEEC
T ss_pred CeEEEECCEEEEee
Confidence 47899999988876
No 26
>PF12450 vWF_A: von Willebrand factor ; InterPro: IPR022156 This domain family is found in bacteria, and is approximately 100 amino acids in length. The family is found in association with PF00092 from PFAM. There are two conserved sequence motifs: STF and DVD. There are two completely conserved residues (E and N) that may be functionally important. In hemostasis, platelet adhesion to the damaged vessel wall is mediated by several proteins, including von Willebrand factor. In solution vWF becomes immobilized via its A3 domain on the fibrillar collagen of the vessel wall and acts as an intermediary between collagen and the platelet receptor glycoprotein Ibalpha (GPIbalpha), which is the only platelet receptor that does not require prior activation for bond formation.
Probab=27.04 E-value=83 Score=22.25 Aligned_cols=45 Identities=20% Similarity=0.455 Sum_probs=34.3
Q ss_pred CceEEecCCCCcHHHHHHhhhcCcccCCCCCChhHHHHHHHHhCCCCc
Q psy4757 45 LNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEELEFWGLDSN 92 (169)
Q Consensus 45 ~~e~f~DRdp~~F~~IL~ylr~g~l~~p~~~~~~~~~~E~~f~~l~~~ 92 (169)
-..|=||-|-..+..|-.||..|.+.-|..|- ..|=++||.-+..
T Consensus 28 lSTFSiDVDtaSYs~vRr~L~~G~lPp~~aVR---~EE~iNyF~YdY~ 72 (99)
T PF12450_consen 28 LSTFSIDVDTASYSNVRRFLNQGQLPPPDAVR---IEEMINYFDYDYP 72 (99)
T ss_pred ccceeEEcCcccHHHHHHHHHCCCCCCcCcee---HHHHhhcccCCCC
Confidence 34577999999999999999999986555443 3344688887754
No 27
>cd00495 Ribosomal_L25_TL5_CTC Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain. L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC, which each contain two domains. CTC is a known stress protein, and proteins of this family are believed to have two functions, acting as both ribosomal and stress proteins. In Escherichia coli, cells deleted for L25 were found to be viable; however, these cells grew slowly and had impaired protein synthesis capability. In Bacillus subtilis, CTC is induced under stress conditions and located in the ribosome; it has been proposed that CTC may be necessary for accurate translation under stress conditions. Ribosomal_L25_TL5_CTC is found only in bacteria and some plastids. Due to its limited taxonomic diversity and the viability of cells deleted for L25, this protein is not believed to be necessary for ribosomal assembly. Eukaryotes contain a protein called L25, which is not homologous to bacterial L
Probab=25.14 E-value=77 Score=21.45 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=21.6
Q ss_pred CCeEEEEECcEEEEecHHHHhcCCCc
Q psy4757 4 EHRIILNVGGIRYETYKATLKKIPAT 29 (169)
Q Consensus 4 ~~~v~lNVGG~~f~t~~~tL~~~p~s 29 (169)
+..+.|+|+|..+.+-...+.++|-+
T Consensus 56 ~~~~~L~i~g~~~~~~ikevQ~~pv~ 81 (91)
T cd00495 56 STLIELNIDGKKENVLIKDVQRHPVK 81 (91)
T ss_pred ceEEEEEECCEEEEEEEehhhhccCC
Confidence 56889999999998888888888754
No 28
>PF01386 Ribosomal_L25p: Ribosomal L25p family; InterPro: IPR020055 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry models the short-form of the ribosomal L25 protein. The long-form has homology to the general stress protein Ctc of Bacillus subtilis, a mesophile, and ribosomal protein TL5 of Thermus thermophilus, a thermophile. Ribosomal protein L25 of Escherichia coli and Haemophilus influenzae appear to be orthologous but consist only of the N-terminal half of Ctc and TL5. Both short (L25-like) and full-length (CTC-like) members of this family bind the E-loop of bacterial 5S rRNA.; GO: 0003735 structural constituent of ribosome, 0008097 5S rRNA binding, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2HGQ_Y 2HGJ_Y 2Y19_Z 2WRL_Z 3KIT_Z 2WH2_Z 2WDN_Z 3V25_Z 3HUZ_Z 3KIY_Z ....
Probab=24.79 E-value=42 Score=22.80 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=21.3
Q ss_pred CCCeEEEEECcEEEEecHHHHhcCCCc
Q psy4757 3 GEHRIILNVGGIRYETYKATLKKIPAT 29 (169)
Q Consensus 3 ~~~~v~lNVGG~~f~t~~~tL~~~p~s 29 (169)
.+..+.|||+|..+.+-..-+.++|-+
T Consensus 54 ~~~~i~L~i~g~~~~vlikevQ~~p~~ 80 (88)
T PF01386_consen 54 ENSVIELNIDGKKYNVLIKEVQRDPVT 80 (88)
T ss_dssp TTSEEEEEETTEEEEEEEEEEEEESSS
T ss_pred ceEEEEEEECCEEEEEEEEeeeeCCCC
Confidence 457899999998888887777777643
No 29
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=21.18 E-value=1.1e+02 Score=21.07 Aligned_cols=55 Identities=13% Similarity=0.204 Sum_probs=36.3
Q ss_pred CcEEEEecHHHHhcCCCcchhhhhhcCCCCCCCCceEEec-CCCCcHHHHHHhhhcCc
Q psy4757 12 GGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFD-RHPGVFAQILNYYRTGK 68 (169)
Q Consensus 12 GG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~~e~f~D-Rdp~~F~~IL~ylr~g~ 68 (169)
.|+.|.+.+.....- .++..++......+...+.+-+. -++..+..|+.|+..-+
T Consensus 10 Dg~~f~v~~~~a~~S--~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~ 65 (104)
T smart00512 10 DGEVFEVEREVARQS--KTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHV 65 (104)
T ss_pred CCCEEEecHHHHHHH--HHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcc
Confidence 489999999987542 23455555322112222467775 78899999999998643
No 30
>PLN00219 predicted protein; Provisional
Probab=21.05 E-value=41 Score=21.09 Aligned_cols=18 Identities=39% Similarity=1.012 Sum_probs=13.3
Q ss_pred cCCCCc--HHHHHHhhhcCc
Q psy4757 51 DRHPGV--FAQILNYYRTGK 68 (169)
Q Consensus 51 DRdp~~--F~~IL~ylr~g~ 68 (169)
||+|.. +..|+|||+..+
T Consensus 3 drhpschpyspvfnfyqekk 22 (65)
T PLN00219 3 DRHPSCHPYSPVFNFYQEKK 22 (65)
T ss_pred CCCCCCCCCchhHHHHHHHH
Confidence 677754 677889998754
No 31
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=20.97 E-value=35 Score=14.25 Aligned_cols=6 Identities=50% Similarity=2.084 Sum_probs=3.5
Q ss_pred cCcccc
Q psy4757 94 VEPCCW 99 (169)
Q Consensus 94 l~~CC~ 99 (169)
+..|||
T Consensus 6 iryccw 11 (11)
T PF08097_consen 6 IRYCCW 11 (11)
T ss_pred hheecC
Confidence 445665
No 32
>PHA01811 hypothetical protein
Probab=20.09 E-value=1.2e+02 Score=19.78 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.2
Q ss_pred CCCCCeEEEEECcEEEE
Q psy4757 1 MDGEHRIILNVGGIRYE 17 (169)
Q Consensus 1 ~~~~~~v~lNVGG~~f~ 17 (169)
|-.+++|+|.|-|..|.
T Consensus 1 mk~ddivtlrvkgyi~h 17 (78)
T PHA01811 1 MKVDDIVTLRVKGYILH 17 (78)
T ss_pred CCcccEEEEEEeeEEEE
Confidence 67789999999997765
Done!