RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4757
(169 letters)
>gnl|CDD|202161 pfam02214, K_tetra, K+ channel tetramerisation domain. The
N-terminal, cytoplasmic tetramerisation domain (T1) of
voltage-gated K+ channels encodes molecular
determinants for subfamily-specific assembly of
alpha-subunits into functional tetrameric channels. It
is distantly related to the BTB/POZ domain pfam00651.
Length = 92
Score = 139 bits (352), Expect = 1e-43
Identities = 50/92 (54%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 7 IILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRT 66
+ LNVGG R+ET K+TL + P T L RL + YD NEYFFDR P F ILN+YRT
Sbjct: 1 VRLNVGGKRFETSKSTLTRFPDTLLGRLLKRCDFYDDDTNEYFFDRSPKHFETILNFYRT 60
Query: 67 -GKLHYPTNVCGPLFEEELEFWGLDSNQVEPC 97
GKLH P VC F EELEF+GL +E C
Sbjct: 61 GGKLHRPEEVCLDSFLEELEFYGLGELAIELC 92
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac.
Domain in Broad-Complex, Tramtrack and Bric a brac.
Also known as POZ (poxvirus and zinc finger) domain.
Known to be a protein-protein interaction motif found
at the N-termini of several C2H2-type transcription
factors as well as Shaw-type potassium channels. Known
structure reveals a tightly intertwined dimer formed
via interactions between N-terminal strand and helix
structures. However in a subset of BTB/POZ domains,
these two secondary structures appear to be missing. Be
aware SMART predicts BTB/POZ domains without the beta1-
and alpha1-secondary structures.
Length = 97
Score = 63.9 bits (156), Expect = 4e-14
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 7 IILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRT 66
+ L VGG ++ +KA L + + Y D P F +LN+ T
Sbjct: 2 VTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFK-ESDKSEIYLDDVSPEDFRALLNFLYT 60
Query: 67 GKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCW 99
GKL P E ++ + VE C
Sbjct: 61 GKLDLPEE-NVEELLELADYLQIPG-LVELCEE 91
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 32.0 bits (73), Expect = 0.11
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 10/49 (20%)
Query: 129 EIARMFGYEDAYLED-SLNAWQR--------LKPKVWSLFDEPYSSLGA 168
E+ + G+ED Y++ S QR LKPKV LFDEP S+L A
Sbjct: 122 ELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVL-LFDEPLSNLDA 169
>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 28.9 bits (65), Expect = 1.2
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 110 TTLAILDKLDIDAEKPTEEEIARMFGYEDA 139
TT A+L D DAE+ TEE AR+F ++A
Sbjct: 215 TTAAVLAGFDRDAEELTEES-ARLFVSDEA 243
>gnl|CDD|213364 cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like
subfamily. This bacterial subfamily belongs to the
Thermotoga maritima CorA (TmCorA)-like family of the MIT
superfamily of essential membrane proteins involved in
transporting divalent cations (uptake or efflux) across
membranes. This subfamily includes the Mg2+ transporter
Mycobacterium tuberculosis CorA (which also transports
Co2+). Thermotoga maritima CorA forms funnel-shaped
homopentamers, the tip of the funnel is formed from two
C-terminal transmembrane (TM) helices from each monomer,
and the large opening of the funnel from the N-terminal
cytoplasmic domains. The GMN signature motif of the MIT
superfamily occurs just after TM1, mutation within this
motif is known to abolish Mg2+ transport by a related
protein, Saccharomyces cerevisiae Alr1p. Natural
variants in this signature sequence may be associated
with the transport of different divalent cations. The
functional diversity of the MIT superfamily may also be
due to minor structural differences regulating gating,
substrate selection, and transport.
Length = 292
Score = 28.6 bits (65), Expect = 1.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 125 PTEEEIARM---FGYEDAYLEDSLNAWQRLKPKV 155
P EE+A + FG + +ED+++A QR PK+
Sbjct: 10 PDAEELAAVAEEFGLHELAVEDAVHAHQR--PKL 41
>gnl|CDD|164914 PHA02417, PHA02417, hypothetical protein.
Length = 83
Score = 27.3 bits (60), Expect = 1.4
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 12/53 (22%)
Query: 127 EEEIARMFGYEDAYLEDSLNA------------WQRLKPKVWSLFDEPYSSLG 167
++ +A +F E AY D A RLKP+V LFD +LG
Sbjct: 30 QQRVAGLFWLEIAYCSDRTGAEAAIRAAVIARRRARLKPRVLGLFDRDGQALG 82
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 28.7 bits (65), Expect = 1.7
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 152 KPKVWSLFDEPYSSLGAK 169
+P V+ LFDEP S+L AK
Sbjct: 152 EPAVF-LFDEPLSNLDAK 168
>gnl|CDD|226179 COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 579
Score = 28.0 bits (62), Expect = 2.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 113 AILDKLDIDAEKPTEEEIARM 133
A+L + PTE E+A M
Sbjct: 164 AVLGLDRATDDPPTEAELAAM 184
>gnl|CDD|233341 TIGR01280, xseB, exodeoxyribonuclease VII, small subunit. This
protein is the small subunit for exodeoxyribonuclease
VII. Exodeoxyribonuclease VII is made of a complex of
four small subunits to one large subunit. The complex
degrades single-stranded DNA into large acid-insoluble
oligonucleotides. These nucleotides are then degraded
further into acid-soluble oligonucleotides [DNA
metabolism, Degradation of DNA].
Length = 67
Score = 26.2 bits (58), Expect = 2.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 128 EEIARMFGYEDAYLEDSLNAWQR 150
E+I + D LE++LN ++R
Sbjct: 11 EQIVQKLESGDLALEEALNLFER 33
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 27.8 bits (62), Expect = 3.0
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 32/78 (41%)
Query: 104 IHRDTQTTLAILDKLDIDAEKPTEE------------EIARMFGYEDAYLEDSLNAWQRL 151
++RDT+ AI D+LDID + P + EIA+ F Y NA
Sbjct: 111 MYRDTK---AIFDELDIDID-PRAKVATLSVSQMQMIEIAKAFSY---------NA---- 153
Query: 152 KPKVWSLFDEPYSSLGAK 169
K+ + DEP SSL K
Sbjct: 154 --KI-VIMDEPTSSLTEK 168
>gnl|CDD|223792 COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme
metabolism].
Length = 127
Score = 26.9 bits (60), Expect = 3.1
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 114 ILDKLDIDAEKPTEEEIARMFG-YEDAYLEDSLN 146
+ D + D E PT E IA+ L D
Sbjct: 71 LNDIEEFDKENPTAENIAKWIFDRLKVVLPDEAE 104
>gnl|CDD|217752 pfam03833, PolC_DP2, DNA polymerase II large subunit DP2.
Length = 852
Score = 27.8 bits (62), Expect = 3.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 117 KLDIDAEKPTEEEIARM 133
L ID KPTEEEI R
Sbjct: 158 ALGIDRYKPTEEEIERY 174
>gnl|CDD|185583 PTZ00375, PTZ00375, dihydroxyacetone kinase-like protein;
Provisional.
Length = 584
Score = 27.5 bits (61), Expect = 3.6
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 74 NVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDIDA 122
V L E E LD+ + S + R ++ L L L ++A
Sbjct: 384 RVFETLIESENYLNELDAEVGDGDLGSG--LERSSKAVLESLPYLPLEA 430
>gnl|CDD|213356 cd12822, TmCorA-like, Thermotoga maritima CorA-like family. This
family belongs to the MIT superfamily of essential
membrane proteins involved in transporting divalent
cations (uptake or efflux) across membranes. Members of
the Thermotoga maritima CorA_like family are found in
all three kingdoms of life. It is a functionally diverse
family, in addition to the CorA Co2+ transporter from
the hyperthermophilic Thermotoga maritima, it includes
three Saccharomyces cerevisiae members: two plasma
membrane proteins, the Mg2+ transporter Alr1p/Swc3p and
the putative Mg2+ transporter, Alr2p, and the vacuole
membrane protein Mnr2p, a putative Mg2+ transporter.
Thermotoga maritima CorA forms funnel-shaped
homopentamers, the tip of the funnel is formed from two
C-terminal transmembrane (TM) helices from each monomer,
and the large opening of the funnel from the N-terminal
cytoplasmic domains. The GMN signature motif of the MIT
superfamily occurs just after TM1, mutation within this
motif is known to abolish Mg2+ transport by Alr1p.
Natural variants in this signature sequence may be
associated with the transport of different divalent
cations. The functional diversity of the MIT superfamily
may also be due to minor structural differences
regulating gating, substrate selection, and transport.
Length = 289
Score = 27.5 bits (62), Expect = 3.6
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 120 IDAEKPTEEEIARM---FGYEDAYLEDSLNAWQRLKPKV 155
ID E PTEEE+ + FG+ +ED+LN QR PK+
Sbjct: 2 IDLEGPTEEELQLLAEEFGFHPLAIEDALNERQR--PKI 38
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 27.2 bits (61), Expect = 3.8
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 152 KPKVWSLFDEPYSSLGAK 169
+PKV+ L DEP S+L AK
Sbjct: 148 EPKVF-LMDEPLSNLDAK 164
>gnl|CDD|237798 PRK14714, PRK14714, DNA polymerase II large subunit; Provisional.
Length = 1337
Score = 27.7 bits (62), Expect = 4.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 117 KLDIDAEKPTEEEIARM 133
KL ID KP EEEI R
Sbjct: 166 KLGIDRYKPREEEIERY 182
>gnl|CDD|233849 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase. This
enzyme, formally named (1->4)-alpha-D-glucan
1-alpha-D-glucosylmutase, is the TreY enzyme of the
TreYZ pathway of trehalose biosynthesis, an alternative
to the OtsAB pathway. Trehalose may be incorporated into
more complex compounds but is best known as compatible
solute. It is one of the most effective osmoprotectants,
and unlike the various betaines does not require
nitrogen for its synthesis [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 825
Score = 27.4 bits (61), Expect = 4.5
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 29 TRLSRLTEALANYDPILNEYFFDRHPGVFAQILNY---YRT 66
RL+RL LA DP ++ + ++L YRT
Sbjct: 357 RRLARLLARLAELDPAARDFTPEALRQALRELLACFPVYRT 397
>gnl|CDD|232874 TIGR00207, fliG, flagellar motor switch protein FliG. The fliG
protein along with fliM and fliN interact to form the
switch complex of the bacterial flagellar motor located
at the base of the basal body. This complex interacts
with chemotaxis proteins (eg CHEY). In addition the
complex interacts with other components of the motor
that determine the direction of flagellar rotation. The
model contains putative members of the fliG family at
scores of less than 100 from Agrobacterium radiobacter
and Sinorhizobium meliloti as well as fliG-like genes
from treponema pallidum and Borrelia burgdorferi. That
is why the suggested cutoff is set at 20 but was set at
100 to construct the family [Cellular processes,
Chemotaxis and motility].
Length = 338
Score = 27.1 bits (60), Expect = 5.1
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 107 DTQTTLAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRL 151
D +T I+ L+ + EE MF +ED D + QR+
Sbjct: 212 DRKTEKTIITSLEEFDPELAEEIKKEMFVFEDIVDLDD-RSIQRV 255
>gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid
amidohydrolases) catalyze the hydrolysis of
N-acyl-D-amino acids to produce the corresponding
D-amino acids, which are used as intermediates in the
synthesis of pesticides, bioactive peptides, and
antibiotics.
Length = 415
Score = 27.3 bits (61), Expect = 5.2
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 118 LDIDAEKPTEEEIARMFGYEDAYLEDSLNA 147
+ +DA + TEEE+A+M L ++L A
Sbjct: 154 MGLDAREATEEELAKM----RELLREALEA 179
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 27.3 bits (60), Expect = 5.3
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 5 HRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPI-LNEYFFDR 52
HR++ + G +RY T A PA + LA Y + + EYF +R
Sbjct: 244 HRLLRSYGALRYTTVMAATAAEPAG-----LQYLAPYSGVTMGEYFMNR 287
>gnl|CDD|236579 PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed.
Length = 365
Score = 27.0 bits (61), Expect = 5.8
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 3 GEHRIILNVGGI 14
E R +LN+GGI
Sbjct: 158 DETRAVLNIGGI 169
>gnl|CDD|132588 TIGR03549, TIGR03549, YcaO domain protein. This family consists of
remarkably well-conserved proteins from gamma and beta
Proteobacteria, heavily skewed towards organisms of
marine environments. Its gene neighborhood is not
conserved. This family has an OsmC-like N-terminal
domain. It shares a YcaO domain, frequently associated
with ATP-dependent cyclodehydration for peptide
modification. The function is unknown. Fifteen of the
first sixteen members of this family are from
selenouridine-positive genomes, but this correlation may
not be meaningful.
Length = 718
Score = 26.7 bits (59), Expect = 6.6
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 125 PTEEEIARMFG-YEDAYLEDSLNAWQRLKPKVWSL 158
P E+ IA M D ++ + +W+ + P VWSL
Sbjct: 157 PLEQTIANMTAILADLGMKIEIASWRNIVPNVWSL 191
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 26.7 bits (59), Expect = 7.8
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 9 LNVGGIRYETYKATLKKIPATRLS-RLTEALANYDPILNEY 48
LN G RY K T K+I R S + A DP+L++Y
Sbjct: 221 LNRGCTRYFANKETDKQILQNRKSPEHLKKGALKDPLLDDY 261
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional.
Length = 693
Score = 26.5 bits (58), Expect = 8.1
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 66 TGKLHY-PTNVCGPLFEEELEFWGLDSNQVEPCCWSTYS 103
T +HY PT CG +++L DSN C + Y+
Sbjct: 148 TAFMHYEPTGKCGEAKDDDLT----DSNGETDCYTTNYN 182
>gnl|CDD|213352 cd12792, RasGAP_plexin_B2, Ras-GTPase Activating Domain of
plexin-B2. Plexins form a conserved family of
transmembrane receptors for semaphorins and may be the
ancestors of semaphorins. Plexins are divided into four
types (A-D) according to sequence similarity. Plexin-B2
serves as the receptor of Sema4C and Sema4G. By
signaling the effect of Sema4C and Sema4G, the plexin-B2
receptor is critically involved in neural tube closure
and cerebellar granule cell development. Mice lacking
Plexin-B2 demonstrated defects in closure of the neural
tube and disorganization of the embryonic brain. In
developing kidney, Sema4C and Plexin-B2 signaling
modulates ureteric branching. Plexin-B2 is expressed
both in the pretubular aggregates and the ureteric
epithelium in the developing kidney. Deletion of
Plexin-B2 results in renal hypoplasia and occasional
double ureters. Plexins contain a C-terminal RasGAP
domain, which functions as an enhancer of the hydrolysis
of GTP that is bound to Ras-GTPases. Plexins display GAP
activity towards the Ras homolog Rap. Although the Rho
(Ras homolog) GTPases are most closely related to
members of the Ras family, RhoGAP and RasGAP show no
sequence homology at their amino acid level. RasGTPases
function as molecular switches in a large number of of
signaling pathways. When bound to GTP they are in the on
state and when bound to GDP they are in the off state.
The RasGAP domain speeds up the hydrolysis of GTP in
Ras-like proteins acting as a negative regulator.
Length = 400
Score = 26.5 bits (58), Expect = 8.3
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
Query: 26 IPATRLSRLTEALANYDPILNEYFF---------------DRHPGVFAQILNYYRTGKLH 70
IP R + + +AL + +LN F R FA +L GKL
Sbjct: 34 IPEARRATVEQALNQFSNLLNSKTFLINFIHTLENQRDFNARAKVYFASLLTVALHGKLE 93
Query: 71 YPTNVCGPLFEEELE 85
Y T++ L E +E
Sbjct: 94 YYTDIMRTLLLELME 108
>gnl|CDD|232940 TIGR00361, ComEC_Rec2, DNA internalization-related competence
protein ComEC/Rec2. Apparant orthologs are found in 5
species so far (Haemophilus influenzae, Escherichia
coli, Bacillus subtilis, Neisseria gonorrhoeae,
Streptococcus pneumoniae), of which all but E. coli are
model systems for the study of competence for natural
transformation. This protein is a predicted multiple
membrane-spanning protein likely to be involved in DNA
internalization. In a large number of bacterial species
not known to exhibit competence, this protein is
replaced by a half-length N-terminal homolog of unknown
function, modelled by the related model ComEC_N-term.
The role for this protein in species that are not
naturally transformable is unknown [Cellular processes,
DNA transformation].
Length = 662
Score = 26.4 bits (58), Expect = 8.7
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 10/45 (22%)
Query: 121 DAEKPTEEEIARMFGYEDAYL----------EDSLNAWQRLKPKV 155
D E E+E+ R+F A + S Q+++PKV
Sbjct: 582 DLEAEGEQEVMRVFPNIKADVLQVGHHGSKTSTSEELIQQVQPKV 626
>gnl|CDD|236753 PRK10757, PRK10757, inositol monophosphatase; Provisional.
Length = 267
Score = 26.3 bits (58), Expect = 8.9
Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 30/92 (32%)
Query: 23 LKKIP------ATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYR----------- 65
+K++P A R+ TE YDP+ NE F G AQ LN YR
Sbjct: 93 IKRLPHFAVSIAVRIKGRTEVAVVYDPMRNE-LFTATRGQGAQ-LNGYRLRGSTARDLDG 150
Query: 66 ----TG-----KLHYPT--NVCGPLFEEELEF 86
TG K H T N+ G LF E +F
Sbjct: 151 TILATGFPFKAKQHATTYINIVGKLFTECADF 182
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.430
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,036,749
Number of extensions: 828109
Number of successful extensions: 972
Number of sequences better than 10.0: 1
Number of HSP's gapped: 970
Number of HSP's successfully gapped: 39
Length of query: 169
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 79
Effective length of database: 6,945,742
Effective search space: 548713618
Effective search space used: 548713618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)