RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4757
(169 letters)
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular
recogni zinc-binding; 2.00A {Aplysia californica} SCOP:
d.42.1.2
Length = 115
Score = 161 bits (408), Expect = 5e-52
Identities = 98/115 (85%), Positives = 109/115 (94%)
Query: 1 MDGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQI 60
MD E+R+I+NVGGIR+ETYKATLKKIPATRLSRLTE + NYDP+LNEYFFDRHPGVFAQI
Sbjct: 1 MDAENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQI 60
Query: 61 LNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAIL 115
+NYYR+GKLHYPT+VCGPLFEEELEFWGLDSNQVEPCCW TY+ HRDTQ TLA+L
Sbjct: 61 INYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTAHRDTQETLAVL 115
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1,
membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Length = 140
Score = 152 bits (385), Expect = 3e-48
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 2 DGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQIL 61
+ I+LNV G R++T++ TL++ P T L E ++ EYFFDR P VF +L
Sbjct: 32 RQDELIVLNVSGRRFQTWRTTLERYPDTLLGST-EKEFFFNEDTKEYFFDRDPEVFRCVL 90
Query: 62 NYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRD 107
N+YRTGKLHYP C +++EL F+G+ + CC+ Y +
Sbjct: 91 NFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKR 136
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels,
tetramerization domain, T1 domain, transport PR; 2.60A
{Homo sapiens} SCOP: d.42.1.2
Length = 124
Score = 149 bits (377), Expect = 3e-47
Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 2 DGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQIL 61
+ I+LNV G R++T++ TL++ P T L + ++ EYFFDR P VF +L
Sbjct: 10 RQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKE-FFFNEDTKEYFFDRDPEVFRCVL 68
Query: 62 NYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQ 109
N+YRTGKLHYP C +++EL F+G+ + CC+ Y +
Sbjct: 69 NFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKREN 116
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated
potassium channel SHAL, membrane protein; 2.10A {Rattus
norvegicus} SCOP: d.42.1.2
Length = 105
Score = 146 bits (371), Expect = 1e-46
Identities = 44/101 (43%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 7 IILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRT 66
I+LNV G R++T++ TL++ P T L Y P +YFFDR P +F ILN+YRT
Sbjct: 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERD-FFYHPETQQYFFDRDPDIFRHILNFYRT 60
Query: 67 GKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRD 107
GKLHYP + C ++EEL F+GL + CC+ Y R
Sbjct: 61 GKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRR 101
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 150 bits (379), Expect = 1e-43
Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 36/169 (21%)
Query: 2 DGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQIL 61
+ R+++N+ G+R+ET TL + P T L + + +DP+ NEYFFDR+ F IL
Sbjct: 49 ESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAIL 108
Query: 62 NYYRTG-KLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKLDI 120
YY++G +L P NV +F EE+ F+ L +E I
Sbjct: 109 YYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIK--------------- 153
Query: 121 DAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKVWSLFDEPYSSLGAK 169
+ E+P + +VW LF+ P SS A+
Sbjct: 154 EEERPL--------------------PENEFQRQVWLLFEYPESSGPAR 182
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain
T1, pentamer, unkno function; 1.90A {Homo sapiens}
Length = 107
Score = 120 bits (303), Expect = 4e-36
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 6 RIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPIL---NEYFFDRHPGVFAQILN 62
+ LNVGG + T + TL + P + L RL +A + D Y DR P F +LN
Sbjct: 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLN 66
Query: 63 YYRTGKLHYPTNVCGPLFEEELEFWGLDS 91
Y R GKL ++ EE EF+ + S
Sbjct: 67 YLRHGKLVINKDLAEEGVLEEAEFYNITS 95
>1t1d_A Protein (potassium channel KV1.1); potassium channels,
tetramerization domain, aplysia KV1.1, proton
transport, membrane protein; 1.51A {Aplysia
californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A
1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Length = 100
Score = 118 bits (298), Expect = 1e-35
Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 6 RIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYR 65
R+++NV G+R+ET TL + P T L + YDP+ NEYFFDR+ F IL +Y+
Sbjct: 2 RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61
Query: 66 T-GKLHYPTNVCGPLFEEELEFWGLDSNQVE 95
+ G+L P NV +F EE++F+ L N E
Sbjct: 62 SGGRLRRPVNVPLDVFSEEIKFYELGENAFE 92
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium
channel domain T1, pentameric assembly, HOST-virus
interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Length = 202
Score = 117 bits (294), Expect = 7e-34
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 7/138 (5%)
Query: 2 DGEHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNE---YFFDRHPGVFA 58
+ LNVGG + T + TL + P + L RL +A + D +E Y DR P F
Sbjct: 9 SVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFG 68
Query: 59 QILNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTLAILDKL 118
+LNY R GKL ++ EE EF+ + S + + + +
Sbjct: 69 PVLNYLRHGKLVINKDLAEEGVLEEAEFYNITS--LIKLVKDKIRERDSKTSQVPVKHVY 126
Query: 119 DIDAEKPTEEEIARMFGY 136
+ + EEE+ +M
Sbjct: 127 RV--LQCQEEELTQMVST 142
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 1e-07
Identities = 47/286 (16%), Positives = 79/286 (27%), Gaps = 126/286 (44%)
Query: 2 DGEHRIILNVGG----------IR--YETYK---ATLKKIPATRLSRLTEA--------- 37
+G +++ GG +R Y+TY L K A LS L
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 38 --------LANYDPILNEYFFDRHP------GVFAQILNYYRTGKLH--YPTNVCGPL-- 79
L N ++ + P GV Q+ +Y T KL P + L
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGV-IQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 80 ----------------------FEE------ELEFW-GLDSNQVEPCCWSTYSIHRDTQT 110
F + F+ G+ + P SI D+
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 111 T--------LAI----LDKLD--ID---AEKPTEEEI-------ARMF---GY-EDAYLE 142
L+I +++ ++ + P +++ A+ G + Y
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY-- 387
Query: 143 DSLNAW------------------QRLKPKVWSLFD---EPY-SSL 166
LN +R K K + F P+ S L
Sbjct: 388 -GLNLTLRKAKAPSGLDQSRIPFSER-KLKFSNRFLPVASPFHSHL 431
Score = 26.2 bits (57), Expect = 6.9
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 40/136 (29%)
Query: 21 ATLKKIPATRLSRLTEALANY--------DPILNEY---FF----DRHPGVFAQ------ 59
A L + T L + E + NY P + F + + + A
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 60 ILNY-------YRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTTL 112
+Y Y+T Y V G L + + + +T + L
Sbjct: 166 TDDYFEELRDLYQT----YHVLV-GDLIKFS-------AETLSELIRTTLDAEKVFTQGL 213
Query: 113 AILDKLDIDAEKPTEE 128
IL+ L+ + P ++
Sbjct: 214 NILEWLENPSNTPDKD 229
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.26
Identities = 27/183 (14%), Positives = 47/183 (25%), Gaps = 67/183 (36%)
Query: 15 RYETYKATL-------KKIPATR---LSRLTEALANYDPILNEYFFDRHPGVF------- 57
Y + L K +R +L +AL P V
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP---------AKNVLIDGVLGS 161
Query: 58 ------AQILNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQTT 111
+ Y+ + + FW L+ C S ++ Q
Sbjct: 162 GKTWVALDVCLSYKV-QCKMDFKI----------FW-LNLKN----CNSPETVLEMLQKL 205
Query: 112 LAILDK-----LDIDAEKP-----TEEEIARMFGYEDAYLEDSL----NAWQRLKPKVWS 157
L +D D + + E+ R+ + E+ L N K W+
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--YENCLLVLLNVQN---AKAWN 260
Query: 158 LFD 160
F+
Sbjct: 261 AFN 263
Score = 27.9 bits (61), Expect = 1.8
Identities = 10/91 (10%), Positives = 27/91 (29%), Gaps = 29/91 (31%)
Query: 25 KIPATRLSRLTEALANYDP--ILNE----------------YFFDRH----------PGV 56
IP LS + + D ++N+ + +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 57 FAQILNYYRTGKLHYPTNVCGPLFEEELEFW 87
I+++Y K + ++ P + ++ +
Sbjct: 446 HRSIVDHYNIPK-TFDSDDLIPPYLDQYFYS 475
Score = 26.4 bits (57), Expect = 7.4
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 12/50 (24%)
Query: 111 TLAILDK-LDIDAEK-PTEEE------IARMFGYEDAYLEDSLNAWQRLK 152
++L K LD + P E ++ + + D L W K
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLS-IIA---ESIRDGLATWDNWK 348
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold,
structural genomics, PSI-2; HET: PG5; 1.49A
{Burkholderia thailandensis}
Length = 142
Score = 29.4 bits (67), Expect = 0.30
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 128 EEIARMFGYEDAYLEDSLNAWQRL 151
++ GYED L D + +
Sbjct: 36 PHFKKIMGYEDHELPDEITGHRES 59
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.38
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 17/43 (39%)
Query: 20 KATLKKIPATRLSRLTEALANYDPILNEYFFDRHP--GVFAQI 60
K LKK L +L Y D P + A +
Sbjct: 19 KQALKK--------LQASLKLYAD-------DSAPALAIKATM 46
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2-
keto-3-deoxygluconate kinase; 2.00A {Sulfolobus
solfataricus} PDB: 2var_A*
Length = 313
Score = 29.8 bits (68), Expect = 0.40
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 108 TQTTLAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKV 155
+T L+IL K DI+ ++ + D +++ ++ L KV
Sbjct: 177 KETILSILKKYDIEVLITDPDDTKILLDVTDP--DEAYRKYKELGVKV 222
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 29.5 bits (67), Expect = 0.51
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 152 KPKVWSLFDEPYSSLGAK 169
+PKV LFDEP S+L A
Sbjct: 151 QPKVL-LFDEPLSNLDAN 167
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 29.1 bits (66), Expect = 0.62
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 152 KPKVWSLFDEPYSSLGAK 169
+P+V L DEP S+L A
Sbjct: 151 EPEVL-LLDEPLSNLDAL 167
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 29.1 bits (66), Expect = 0.68
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 152 KPKVWSLFDEPYSSLGAK 169
+P V L DEP S+L AK
Sbjct: 159 EPDVL-LMDEPLSNLDAK 175
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 29.2 bits (66), Expect = 0.69
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 152 KPKVWSLFDEPYSSLGAK 169
P + L DEP+S+L A+
Sbjct: 158 DPSLL-LLDEPFSNLDAR 174
>2iub_A CORA, divalent cation transport-related protein; membrane protein,
ION transporter; 2.9A {Thermotoga maritima} SCOP:
d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Length = 363
Score = 28.5 bits (64), Expect = 1.1
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 120 IDAEKPTEEE----IARMFGYEDAYLEDSLNAWQRLKPKV 155
I+ + + FG LED LN QR PKV
Sbjct: 74 INITGIHRTDVVQRVGEFFGIHPLVLEDILNVHQR--PKV 111
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 28.4 bits (64), Expect = 1.4
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 152 KPKVWSLFDEPYSSLGAK 169
KP+V+ L DEP S+L AK
Sbjct: 157 KPQVF-LMDEPLSNLDAK 173
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto
reductase; rossmann fold, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Cavia
porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A*
2dm6_A* 1zsv_A 2y05_A*
Length = 333
Score = 27.9 bits (63), Expect = 1.5
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 44 ILNEYFFDRHPGVFAQILNYYRTGKLHY 71
I+ + D ++ + GK+ Y
Sbjct: 275 IVYRWQGDVREKALRDLMKWVLEGKIQY 302
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 27.5 bits (62), Expect = 2.2
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 152 KPKVWSLFDEPYSSLGAK 169
+P V+ L DEP S+L A
Sbjct: 151 EPSVF-LLDEPLSNLDAA 167
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A*
1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A*
3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Length = 492
Score = 27.5 bits (61), Expect = 2.5
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 106 RDTQTTL-AILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPK 154
T +L AI K D +K EE IA+ +A + RL+ K
Sbjct: 303 TKTIESLRAIAAKFDESIQKKCEEVIAKYKPEWEAVVAK---YRPRLEGK 349
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto-
gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus
tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Length = 311
Score = 27.1 bits (61), Expect = 2.5
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 108 TQTTLAILDKLDIDAEKPTEEEIARMFGYEDA 139
+ L +L K + ++ + G D
Sbjct: 176 KREILKLLSKFHLKFLITDTDDSKIILGESDP 207
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; 2.37A {Chromobacterium violaceum}
Length = 125
Score = 26.3 bits (59), Expect = 3.1
Identities = 4/24 (16%), Positives = 13/24 (54%)
Query: 128 EEIARMFGYEDAYLEDSLNAWQRL 151
+ + +FG + A + + +A+ +
Sbjct: 34 QAVHDIFGTDSATFDATEDAYFQR 57
>1pqx_A Conserved hypothetical protein; ZR18,structure,
autostructure,spins,autoassign, northeast structural
genomics consortium; NMR {Staphylococcus aureus subsp}
SCOP: d.267.1.1 PDB: 2ffm_A
Length = 91
Score = 25.8 bits (57), Expect = 3.3
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 148 WQRLKPKVWSLFDEPYSS 165
W+ + PKV ++F+ +
Sbjct: 71 WETVLPKVEAVFELEHHH 88
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A
{Halothermothrix orenii}
Length = 327
Score = 26.8 bits (60), Expect = 4.4
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 124 KPTEEEIARMFGYEDAYLEDSLNAWQRLKPKV 155
KP+ ++ +FG + E+ + + L K
Sbjct: 210 KPSLDDARHLFGPDS--PENYVKRYLELGVKA 239
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_B*
Length = 795
Score = 26.7 bits (60), Expect = 5.0
Identities = 6/10 (60%), Positives = 10/10 (100%)
Query: 128 EEIARMFGYE 137
EE+AR++GY+
Sbjct: 466 EEVARIYGYD 475
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1
d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B
2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Length = 785
Score = 26.3 bits (59), Expect = 5.5
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 128 EEIARMFGYE 137
EE+AR+ GYE
Sbjct: 461 EEVARIQGYE 470
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics,
protein structure initiative; 1.97A {Xylella fastidiosa
TEMECULA1} PDB: 3lki_A*
Length = 338
Score = 26.1 bits (58), Expect = 5.9
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 124 KPTEEEIARMFGYEDAYLEDSLNAWQRLKPKV 155
K + EE+ + A + + + ++
Sbjct: 195 KLSSEELDYLANTLAADANAVIQQLWQGRAQL 226
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI,
protein structure initiative; 2.10A {Bacillus
halodurans} SCOP: c.72.1.1
Length = 306
Score = 26.0 bits (58), Expect = 6.3
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 124 KPTEEEIARMFGYEDAYLEDSLNAWQRL 151
KP E++ + A +ED++ QRL
Sbjct: 179 KPNHHELSELVSKPIASIEDAIPHVQRL 206
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase;
2.3A {Staphylococcus aureus}
Length = 306
Score = 25.9 bits (58), Expect = 6.6
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 124 KPTEEEIARMFGYEDAYLEDSLNAWQRL 151
KP ++E+ MF D + + L
Sbjct: 179 KPNKDELEVMFNTTVNSDADVIKYGRLL 206
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 26.2 bits (58), Expect = 6.7
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 106 RDTQTTLAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKVWSL 158
D + T +KL P ++A MF + + + RL PK +L
Sbjct: 238 HDAKMTPEDYEKLGF----PGARDLANMFRFYALRPDRDIELTLRLNPKALTL 286
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol
phosphate metabolism, ribokinase-L structural genomics;
HET: MSE CIT; 1.89A {Corynebacterium glutamicum}
Length = 319
Score = 26.0 bits (58), Expect = 7.9
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 108 TQTTLAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKV 155
T+ L + +EE G + E + A ++
Sbjct: 186 TKQAEWALQHSTVA--VGNKEECEIAVGETE--PERAGRALLERGVEL 229
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural
genomics, PSI-2, shewanella one MR-1, protein structure
initiative; 2.30A {Shewanella oneidensis}
Length = 370
Score = 25.6 bits (57), Expect = 8.3
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 3 GEHRIILNVGGI 14
G+ R+ILN+GGI
Sbjct: 161 GKKRVILNIGGI 172
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 795
Score = 25.9 bits (58), Expect = 8.5
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 128 EEIARMFGYE 137
EE+AR++GY
Sbjct: 463 EEVARVYGYN 472
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2,
glycolysis, transferase; HET: ATP; 1.98A {Escherichia
coli} PDB: 3n1c_A*
Length = 309
Score = 25.6 bits (57), Expect = 8.8
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 124 KPTEEEIARMFGYEDAYLEDSLNAWQRL 151
KP ++E++ + E +D A Q +
Sbjct: 185 KPNQKELSALVNRELTQPDDVRKAAQEI 212
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases,
HSP70, actin superfamily, anhydro-N-actetylmuramic acid
binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB:
3qbw_A*
Length = 371
Score = 25.6 bits (57), Expect = 9.5
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 3 GEHRIILNVGGI 14
R +LN+GG
Sbjct: 155 DTSRAVLNIGGF 166
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.430
Gapped
Lambda K H
0.267 0.0852 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,759,389
Number of extensions: 156920
Number of successful extensions: 571
Number of sequences better than 10.0: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 51
Length of query: 169
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 82
Effective length of database: 4,272,666
Effective search space: 350358612
Effective search space used: 350358612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.4 bits)