RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4757
(169 letters)
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel
{California sea hare (Aplysia californica) [TaxId:
6500]}
Length = 103
Score = 126 bits (318), Expect = 4e-39
Identities = 89/103 (86%), Positives = 99/103 (96%)
Query: 4 EHRIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNY 63
E+R+I+NVGGIR+ETYKATLKKIPATRLSRLTE + NYDP+LNEYFFDRHPGVFAQI+NY
Sbjct: 1 ENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINY 60
Query: 64 YRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHR 106
YR+GKLHYPT+VCGPLFEEELEFWGLDSNQVEPCCW TY+ HR
Sbjct: 61 YRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTAHR 103
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 105
Score = 114 bits (288), Expect = 1e-34
Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 7 IILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYRT 66
I+LNV G R++T++ TL++ P T L E Y P +YFFDR P +F ILN+YRT
Sbjct: 2 IVLNVSGTRFQTWQDTLERYPDTLLGSS-ERDFFYHPETQQYFFDRDPDIFRHILNFYRT 60
Query: 67 GKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRD 107
GKLHYP + C ++EEL F+GL + CC+ Y R
Sbjct: 61 GKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRR 101
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea
hare (Aplysia californica) [TaxId: 6500]}
Length = 100
Score = 105 bits (264), Expect = 6e-31
Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 6 RIILNVGGIRYETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQILNYYR 65
R+++NV G+R+ET TL + P T L + YDP+ NEYFFDR+ F IL +Y+
Sbjct: 2 RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61
Query: 66 T-GKLHYPTNVCGPLFEEELEFWGLDSNQVE 95
+ G+L P NV +F EE++F+ L N E
Sbjct: 62 SGGRLRRPVNVPLDVFSEEIKFYELGENAFE 92
>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein
kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 28.8 bits (64), Expect = 0.29
Identities = 13/64 (20%), Positives = 20/64 (31%)
Query: 44 ILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYS 103
+ YF + L+Y + G+L G E F+ +
Sbjct: 70 FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGI 129
Query: 104 IHRD 107
IHRD
Sbjct: 130 IHRD 133
>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 350
Score = 26.7 bits (58), Expect = 1.7
Identities = 11/68 (16%), Positives = 21/68 (30%)
Query: 40 NYDPILNEYFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCW 99
N+ ++ F + ++ Y G++ G E F+
Sbjct: 99 NFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH 158
Query: 100 STYSIHRD 107
S I+RD
Sbjct: 159 SLDLIYRD 166
>d1y71a1 b.34.16.1 (A:4-127) Kinase-associated protein B {Bacillus
cereus [TaxId: 1396]}
Length = 124
Score = 24.8 bits (54), Expect = 4.4
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 59 QILNYYRTGKLHYPTNVCGPLFEE 82
+L + G LH P F E
Sbjct: 35 AVLKHPVQGDLHNVKQANVPFFHE 58
>d1v4aa1 a.24.16.4 (A:287-437) Glutamine synthase
adenylyltransferase GlnE, domain 2 {Escherichia coli
[TaxId: 562]}
Length = 151
Score = 24.7 bits (53), Expect = 5.0
Identities = 11/108 (10%), Positives = 27/108 (25%), Gaps = 5/108 (4%)
Query: 57 FAQILNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPC---CWSTYSIHRDTQTTLA 113
Q+ R G+ + + L S + + ++
Sbjct: 43 IVQVFQLIRGGREPSLQSRSLLPTLSAIAELHLLSENDAEQLRVAYLFLRRLENLLQSIN 102
Query: 114 ILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKVWSLFDE 161
+ +++ +A + D A V +F+E
Sbjct: 103 DEQTQTLPSDELNRARLAWAMDFADW--PQLTGALTAHMTNVRRVFNE 148
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT
{Thermus thermophilus [TaxId: 274]}
Length = 75
Score = 23.7 bits (51), Expect = 5.8
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 101 TYSIHRDTQTTLAILDKLDIDAEKPTEEEIARMFGYE 137
T +LD+ E+ EE+AR+ GYE
Sbjct: 35 RVEGEGPTYRVTPPSHRLDLRLEEDLVEEVARIQGYE 71
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA
{Staphylococcus aureus [TaxId: 1280]}
Length = 151
Score = 24.5 bits (52), Expect = 6.3
Identities = 5/36 (13%), Positives = 12/36 (33%)
Query: 48 YFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEE 83
D G ++N + ++ V + +E
Sbjct: 101 GADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEA 136
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 301
Score = 24.4 bits (52), Expect = 8.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 112 LAILDKLDIDAEKPTEEEIARMFGYEDAYLEDSLNAWQRLKPKVWS 157
I D L + E T+EEI +++G+ D+Y+E +L W+
Sbjct: 15 AVIGDALGMPTENLTKEEIKKLYGFVDSYVEPKNYLAGKLNKGEWT 60
>d1ucda_ d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Momordica
charantia) [TaxId: 3673]}
Length = 190
Score = 24.3 bits (52), Expect = 8.5
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 48 YFFDRHPGVFAQILNYYRTGKLHYPTNVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRD 107
P +I + +P + +FW + + C ST++
Sbjct: 46 TNCPGSPFDITKISHLQSQLNTLWPNVLRAN----NQQFWSHEWTKHGTCSESTFNQAAY 101
Query: 108 TQTTLAILDKLDI 120
+ + + + DI
Sbjct: 102 FKLAVDMRNNYDI 114
>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage
looper(Trichoplusia ni), L chain [TaxId: 7111]}
Length = 200
Score = 24.2 bits (52), Expect = 9.3
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 29 TRLSRLTEALANYDPILNEYFFDRH 53
+ L + A +D L Y FD +
Sbjct: 171 SDLKKFITANNGHDLSLALYVFDEY 195
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.430
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 691,428
Number of extensions: 31628
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 20
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)