Query psy4758
Match_columns 318
No_of_seqs 513 out of 1114
Neff 11.4
Searched_HMMs 29240
Date Fri Aug 16 16:56:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 9.9E-31 3.4E-35 226.4 14.8 282 2-299 145-436 (451)
2 3o7q_A L-fucose-proton symport 99.9 1.7E-26 5.8E-31 199.1 16.3 256 2-291 143-427 (438)
3 2gfp_A EMRD, multidrug resista 99.9 1.1E-25 3.7E-30 190.2 4.5 245 2-283 114-363 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.9 6E-24 2.1E-28 185.9 15.5 288 2-301 134-476 (491)
5 2cfq_A Lactose permease; trans 99.9 3.1E-23 1E-27 177.6 10.7 263 8-298 134-401 (417)
6 4gc0_A D-xylose-proton symport 99.9 4.2E-22 1.5E-26 174.2 12.4 290 1-302 151-468 (491)
7 2xut_A Proton/peptide symporte 99.7 4.8E-18 1.6E-22 149.7 9.1 287 2-299 135-505 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.7 8.3E-17 2.8E-21 140.6 14.0 177 107-298 13-198 (491)
9 1pw4_A Glycerol-3-phosphate tr 99.7 3.1E-16 1.1E-20 135.4 13.7 176 106-298 27-208 (451)
10 3o7q_A L-fucose-proton symport 99.7 8.9E-16 3E-20 132.1 15.2 176 109-296 28-229 (438)
11 2xut_A Proton/peptide symporte 99.6 1.2E-15 4.2E-20 134.3 13.4 176 106-296 11-198 (524)
12 2gfp_A EMRD, multidrug resista 99.6 1.4E-15 4.9E-20 128.1 10.6 169 110-294 3-172 (375)
13 2cfq_A Lactose permease; trans 99.5 2.3E-15 8E-20 128.7 -2.4 171 102-288 2-179 (417)
14 4gc0_A D-xylose-proton symport 99.0 3.3E-09 1.1E-13 92.4 12.6 142 142-294 54-218 (491)
15 2jln_A MHP1; hydantoin, transp 52.6 1.1E+02 0.0038 26.3 12.2 55 4-59 19-75 (501)
16 2g9p_A Antimicrobial peptide l 43.9 13 0.00043 16.2 1.3 13 162-174 2-14 (26)
17 2knc_A Integrin alpha-IIB; tra 41.5 46 0.0016 18.6 4.6 12 280-291 18-29 (54)
18 2dw3_A Intrinsic membrane prot 41.4 34 0.0012 20.5 3.3 31 41-71 31-61 (77)
19 3mkt_A Multi antimicrobial ext 36.0 1.9E+02 0.0064 24.0 22.1 17 157-173 292-308 (460)
20 3rko_J NADH-quinone oxidoreduc 34.0 54 0.0018 23.9 4.2 29 274-302 136-164 (184)
21 2nrg_A Intrinsic membrane prot 33.8 57 0.002 19.8 3.5 32 40-71 31-62 (82)
22 2ks1_B Epidermal growth factor 29.5 68 0.0023 17.0 3.9 10 290-299 29-38 (44)
23 2l2t_A Receptor tyrosine-prote 29.4 68 0.0023 17.0 4.0 7 293-299 31-37 (44)
24 2i68_A Protein EMRE; transmemb 27.5 1.1E+02 0.0039 20.8 4.8 25 21-45 64-88 (137)
25 1ldf_A Glycerol uptake facilit 27.0 1.1E+02 0.0037 24.0 5.2 23 42-64 232-254 (281)
26 3arc_T Photosystem II reaction 26.4 64 0.0022 15.6 3.6 12 59-70 18-29 (32)
27 1v54_G Cytochrome C oxidase po 24.8 96 0.0033 19.2 3.5 22 42-63 16-37 (85)
28 2zz9_A Aquaporin-4; water tran 22.9 90 0.0031 24.8 4.0 25 40-64 205-229 (301)
29 4ev6_A Magnesium transport pro 21.5 75 0.0026 25.6 3.5 26 40-65 309-334 (339)
30 2b6o_A Aquaporin-0, lens fiber 21.3 68 0.0023 24.9 3.0 25 40-64 198-222 (263)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=9.9e-31 Score=226.42 Aligned_cols=282 Identities=16% Similarity=0.212 Sum_probs=208.9
Q ss_pred CccCCCCCchhHHHHHHhhHhhHHHhHHHHHHHHhCCCCC-chHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhHhh
Q psy4758 2 SKWAPPMERARLFSFAFSGTQFGNLVTLPVAGLLAGSPWG-WPSIFYVSGAVAIVWAAAWCYIGANSPAQHPFISLEERI 80 (318)
Q Consensus 2 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (318)
+|++|+++|++++++.+.+.++|.+++|.+++++.+. .| ||+.|++.++++++..++.++++||+|++.+..++++.+
T Consensus 145 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (451)
T 1pw4_A 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW-FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK 223 (451)
T ss_dssp HTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC
T ss_pred HHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc
Confidence 6899999999999999999999999999999998877 78 999999999998888777788888877653322111110
Q ss_pred hh-hhccC-ccccccccCCcchhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcceeechhhhchHHHHHHHH
Q psy4758 81 YI-ETSLV-HSSTVSSSMKVPWKAILTSLPVWAVLITHLCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWI 158 (318)
Q Consensus 81 ~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~ 158 (318)
.. +++.+ +++++...++...++++++|.++...+..++.....+.+..++|.|+++.+|+++.+++.+.+...++.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 303 (451)
T 1pw4_A 224 NDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 303 (451)
T ss_dssp CC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 00 00000 00000011111256788999999999999999999999999999999998999999999999999999999
Q ss_pred HHHHHHHhHHHH--hhhcCcchHHHHHHHHHHHHHHHH-HHHHHHHhcCc-hhH-HHHHHHHHHHHHhhhcccccccccc
Q psy4758 159 LILVFSWLADYI--VAKQILSPTVSRKMWNTIGLWGSA-AALVGLSFVGD-NLV-GAITCLTLAIAINAGTYTGFLSNHL 233 (318)
Q Consensus 159 ~~~~~g~l~dr~--g~~~~~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (318)
+.++.|++.||+ ++|+.+ ..+..+.. ++++++...++ +.. .....+..+.+.. ...+....+..
T Consensus 304 ~~~~~g~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~ 372 (451)
T 1pw4_A 304 GTLLCGWMSDKVFRGNRGAT----------GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY-GPVMLIGLHAL 372 (451)
T ss_dssp HHHHHHHHHHHTSTTCHHHH----------HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchhH----------HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHh-chHHHHHHHHH
Confidence 999999999999 888754 34444443 55555555433 222 3333333443333 33444455666
Q ss_pred ccCccc-hhhHHHHHHHHHHH-HHhHhhhhhheeeccCCCccchHHHHHHHHHHHHHHHHHHHhhccc
Q psy4758 234 DLSPNF-AGTLMGFTNGCANI-ASILGPLFVGFIVTDNTSVSQWQTIFLIAAAIFFFGNLIFLIFGTS 299 (318)
Q Consensus 234 ~~~~~~-~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
+..|++ |+++.|+.+...++ |..++|.+.|.+.|. .+|...|++.+++.+++.++.....++
T Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 373 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF----FGWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----SCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667766 99999999999999 999999999999998 678899998888888887776665443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=1.7e-26 Score=199.12 Aligned_cols=256 Identities=12% Similarity=0.084 Sum_probs=191.2
Q ss_pred CccCCCCCchhHHHHHHhhHhhHHHhHHHHHHHHh-CCCCC-------------------------chHHHHHHHHHHHH
Q psy4758 2 SKWAPPMERARLFSFAFSGTQFGNLVTLPVAGLLA-GSPWG-------------------------WPSIFYVSGAVAIV 55 (318)
Q Consensus 2 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~-~~~~g-------------------------Wr~~f~~~~~~~~~ 55 (318)
+|++|+++|++++++.+.+.++|.++++.+++.+. +. .+ ||+.|++.+++.++
T Consensus 143 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 221 (438)
T 3o7q_A 143 TVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN-VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLL 221 (438)
T ss_dssp HHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS-SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999998 55 44 99999888877776
Q ss_pred HHHHHHHH-hcCCCCCCCCCChhHhhhhhhccCccccccccCCcchhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhh-
Q psy4758 56 WAAAWCYI-GANSPAQHPFISLEERIYIETSLVHSSTVSSSMKVPWKAILTSLPVWAVLITHLCQNWGYWTLLTEMPSY- 133 (318)
Q Consensus 56 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~- 133 (318)
..++.++. .||++++++ ++++ +++.+.++++++|+|.++...+..++..........++|.|
T Consensus 222 ~~~~~~~~~~p~~~~~~~---~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (438)
T 3o7q_A 222 VALLIMLTKFPALQSDNH---SDAK-------------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYA 285 (438)
T ss_dssp HHHHHHHCCCCCCTTTCC---CCSS-------------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccccccc---cccc-------------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 54443332 233222110 0000 02233567889999999999999999888899999999999
Q ss_pred hhhhhcceeechhhhchHHHHHHHHHHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q psy4758 134 INSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADYIVAKQILSPTVSRKMWNTIGLWGSAAALVGLSFVGDNLVGAITC 213 (318)
Q Consensus 134 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (318)
+++.+|+++.+++...+...++.+++.++.|+++||+++|+.+ ..+.++..++.+++...++.. .....
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~ 354 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL----------AAYALIAMALCLISAFAGGHV-GLIAL 354 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH----------HHHHHHHHHHHHHHHHCCHHH-HHHHH
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH----------HHHHHHHHHHHHHHHHcCCcH-HHHHH
Confidence 8887799999999999999999999999999999999999866 556666666666666655443 33333
Q ss_pred HHHHHHHhhhccccccccccccCccchhhHHHHHHHHHHHHHhHhhhhhheeeccCCCccc-hHHHHHHHHHHHHHHHH
Q psy4758 214 LTLAIAINAGTYTGFLSNHLDLSPNFAGTLMGFTNGCANIASILGPLFVGFIVTDNTSVSQ-WQTIFLIAAAIFFFGNL 291 (318)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 291 (318)
++.+.+.. ...+.......+..|++++++.++.. ...+++.++|.+.|.+.|. .+ ++..|++.+++.++..+
T Consensus 355 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~----~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 355 TLCSAFMS-IQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDA----AGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHT-THHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHH----HTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHH
Confidence 44444433 34455556655667777888888876 7789999999999999998 44 67777766555444433
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.91 E-value=1.1e-25 Score=190.24 Aligned_cols=245 Identities=13% Similarity=0.067 Sum_probs=185.3
Q ss_pred CccCCCCCchhHHHHHHhhHhhHHHhHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhHhhh
Q psy4758 2 SKWAPPMERARLFSFAFSGTQFGNLVTLPVAGLLAGSPWGWPSIFYVSGAVAIVWAAAWCYIGANSPAQHPFISLEERIY 81 (318)
Q Consensus 2 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~gWr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (318)
+|++|+++|++++++.+.+.++|..++|.+++++.+. .|||+.|++.+++.++..+...+.+||+++++++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 185 (375)
T 2gfp_A 114 RDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR------- 185 (375)
T ss_dssp HHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC-------
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc-------
Confidence 5788999999999999999999999999999999887 79999999998888776555566677765432110
Q ss_pred hhhccCccccccccCCcchhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcceeechhhhchHHHHHHHHHHH
Q psy4758 82 IETSLVHSSTVSSSMKVPWKAILTSLPVWAVLITHLCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILIL 161 (318)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 161 (318)
++.+.++++++|+|.++...+..++..........+.|.|+++.+|.++.+.+.......++.+++.+
T Consensus 186 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 253 (375)
T 2gfp_A 186 ------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAW 253 (375)
T ss_dssp ------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 12234567889999999999999999999999999999999998999999999999999999999999
Q ss_pred HHHHhHHHHhhhcCcchHHHHHHHHHHHHHH-HHHHHH--HHHhcC-chhH-HHHHHHHHHHHHhhhccccccccccccC
Q psy4758 162 VFSWLADYIVAKQILSPTVSRKMWNTIGLWG-SAAALV--GLSFVG-DNLV-GAITCLTLAIAINAGTYTGFLSNHLDLS 236 (318)
Q Consensus 162 ~~g~l~dr~g~~~~~~~~~~r~~~~~~~~~~-~~~~~~--~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (318)
+.+++.||.+++. ..+... ...+.. ...... ++.. .....++.+.+ .+...+.......|..
T Consensus 254 ~~~~l~~r~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~ 320 (375)
T 2gfp_A 254 FAGRPNKRFSTLM------------WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFG-AGMLFPLATSGAMEPF 320 (375)
T ss_dssp HHHTTTTHHHHHH------------HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHH-HHHTSSTTHHHHHTHH
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhC
Confidence 9999999998732 222222 222211 111111 1222 22333334433 3445566666677777
Q ss_pred ccchhhHHHHHHHHHHHHHhHhhhhhheeeccCCCccchHHHHHHHH
Q psy4758 237 PNFAGTLMGFTNGCANIASILGPLFVGFIVTDNTSVSQWQTIFLIAA 283 (318)
Q Consensus 237 ~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 283 (318)
|++|+++.|+.+...++|..++|.+.|.+.+. .+|...+.+.+
T Consensus 321 p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~----~~~~~~~~~~~ 363 (375)
T 2gfp_A 321 PFLAGTAGALVGGLQNIGSGVLASLSAMLPQT----GQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH----HHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHhcC----CcccHHHHHHH
Confidence 86699999999999999999999999999877 67776666543
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.91 E-value=6e-24 Score=185.91 Aligned_cols=288 Identities=14% Similarity=0.072 Sum_probs=179.3
Q ss_pred CccCCCCC--chhHHHHHHhhHhhHHHhHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CC
Q psy4758 2 SKWAPPME--RARLFSFAFSGTQFGNLVTLPVAGLLAGSPWGWPSIFYVSGAVAIVWAAAWCYIGANSPAQHP-----FI 74 (318)
Q Consensus 2 ~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~gWr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 74 (318)
+|++|+++ |++++++++.+.++|..++|.+++.+.+. .|||+.|++.++..++..++..+..|+..++++ ..
T Consensus 134 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4aps_A 134 GTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA-AGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPL 212 (491)
T ss_dssp HHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCC
T ss_pred HHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCcc
Confidence 58899988 77888889999999999999999999988 899999999887776665554444443222111 11
Q ss_pred ChhHhhhhhhc-----------------cCc-cccc--------------------cccCCcchhhhhcchhHHHHHHHH
Q psy4758 75 SLEERIYIETS-----------------LVH-SSTV--------------------SSSMKVPWKAILTSLPVWAVLITH 116 (318)
Q Consensus 75 ~~~~~~~~~~~-----------------~~~-~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~ 116 (318)
++++.+...+. .+. +.++ .+..+.+..+..+....+...+..
T Consensus 213 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (491)
T 4aps_A 213 APEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAA 292 (491)
T ss_dssp SHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 11111110000 000 0000 000000111111223345555555
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcceeechhhhchHHHHHHHHHHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHHHHHH
Q psy4758 117 LCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADYIVAKQILSPTVSRKMWNTIGLWGSAAA 196 (318)
Q Consensus 117 ~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~r~~~~~~~~~~~~~~ 196 (318)
+.....+.....++|.|.++..+.+..+.+.......+..+++.++.+++.||++||+.... ..+..+..+.+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~-----~~~~~~~~~~~~~ 367 (491)
T 4aps_A 293 VLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSP-----TKFAVGLMFAGLS 367 (491)
T ss_dssp HHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCch-----HHHHHHHHHHHHH
Confidence 56666666677888889988788887888999999999999999999999999999876421 1123555555555
Q ss_pred HHHHHhcC---------chhHHHHHHHHHHHHHhhhccccccccccccCccc-hhhHHHHHHHHHHHHHhHhhhhhheee
Q psy4758 197 LVGLSFVG---------DNLVGAITCLTLAIAINAGTYTGFLSNHLDLSPNF-AGTLMGFTNGCANIASILGPLFVGFIV 266 (318)
Q Consensus 197 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~ 266 (318)
+.++.... +........++.+.+. ....+....+..+..|++ |+++.|+.+...++|..++|.+.+.+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGE-MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHH-HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55544421 2222333333344433 333445555666777766 999999999999999999999999887
Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHHHHhhccccc
Q psy4758 267 TDNTSVSQWQTIFLIAAAIFFFGNLIFLIFGTSEV 301 (318)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (318)
+. ++...|...+++.+++.++.+...++.+
T Consensus 447 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 447 AK-----SEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp GS-----STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred cc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 4556777777777777666665554433
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.89 E-value=3.1e-23 Score=177.63 Aligned_cols=263 Identities=11% Similarity=0.096 Sum_probs=173.8
Q ss_pred CCchhHHHHHHhhHhhHHHhHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhHhhhhhhccC
Q psy4758 8 MERARLFSFAFSGTQFGNLVTLPVAGLLAGSPWGWPSIFYVSGAVAIVWAAAWCYIGANSPAQHPFISLEERIYIETSLV 87 (318)
Q Consensus 8 ~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~gWr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (318)
++|+...|....+..+|..++|.+++++.+ .+||+.|++.++..++..+. .+..+|++++..+ +++++
T Consensus 134 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~--~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~------- 201 (417)
T 2cfq_A 134 RRSNFEFGRARMFGCVGWALGASIVGIMFT--INNQFVFWLGSGCALILAVL-LFFAKTDAPSSAT--VANAV------- 201 (417)
T ss_dssp HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH--HCSHHHHTTTTTTTTTHHHH-SCSSCCCCSCSSC--SSSSS-------
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHH-HHHcCcccccccc--ccccc-------
Confidence 356777888888899999999999999887 58999999877765544333 3333332211110 00000
Q ss_pred ccccccccCCcchhhhhcchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc---ceeechhhhchHHHHHHHHHHHHHH
Q psy4758 88 HSSTVSSSMKVPWKAILTSLPVWAVLITHLCQNWGYWTLLTEMPSYINSVLQ---FDIKSNGFLSAAPYLAQWILILVFS 164 (318)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~g 164 (318)
++++++....++++++|+|+++...+..+.....+..+..++|.|+.+.++ .+....+.......++.+++.++.|
T Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 280 (417)
T 2cfq_A 202 -GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAP 280 (417)
T ss_dssp -SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 000001112345678899998887776666555666666778888876443 3344556777777788899999999
Q ss_pred HhHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhccccccccccccCccc-hhhH
Q psy4758 165 WLADYIVAKQILSPTVSRKMWNTIGLWGSAAALVGLSFVGDNLVGAITCLTLAIAINAGTYTGFLSNHLDLSPNF-AGTL 243 (318)
Q Consensus 165 ~l~dr~g~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 243 (318)
+++||+++|+.+ ..+..+.++....+...++.........+.+.+... ..+....+..|..|++ |+++
T Consensus 281 ~l~dr~g~~~~l----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~ 349 (417)
T 2cfq_A 281 LIINRIGGKNAL----------LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATI 349 (417)
T ss_dssp HHHHHHCHHHHH----------HHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHhcHHHHH----------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHH
Confidence 999999999865 455566666655555554433232222222322222 2223345666777777 9999
Q ss_pred HHHH-HHHHHHHHhHhhhhhheeeccCCCccchHHHHHHHHHHHHHHHHHHHhhcc
Q psy4758 244 MGFT-NGCANIASILGPLFVGFIVTDNTSVSQWQTIFLIAAAIFFFGNLIFLIFGT 298 (318)
Q Consensus 244 ~g~~-~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (318)
.++. +...++|+.++|.+.|.+.|. .++...|.+.+++.+++.++.+...+
T Consensus 350 ~g~~~~~~~~lg~~~gp~l~G~l~~~----~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 350 YLVCFCFFKQLAMIFMSVLAGNMYES----IGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHTTTHHHHHHHHTHHHHTHHHH----SHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhHHHHHhhhhHHHHHHh----cCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9994 888899999999999999987 67888898888888887776655444
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.87 E-value=4.2e-22 Score=174.17 Aligned_cols=290 Identities=15% Similarity=0.100 Sum_probs=179.9
Q ss_pred CCccCCCCCchhHHHHHHhhHhhHHHhHHHHHHHHhCC-------CCCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-
Q psy4758 1 MSKWAPPMERARLFSFAFSGTQFGNLVTLPVAGLLAGS-------PWGWPSIFYVSGAVAIVWAAAWCYIGANSPAQHP- 72 (318)
Q Consensus 1 i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~-------~~gWr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~- 72 (318)
++|+.|+++|++..++.+.+..+|.++++.++..+... ..+||+.+.+..+..++. ++..+++||+|+...
T Consensus 151 i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peSp~~L~~ 229 (491)
T 4gc0_A 151 IAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPESPRWLMS 229 (491)
T ss_dssp HHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCCHHHHHH
T ss_pred HHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCChHHHHH
Confidence 36899999999999999999999999999998877653 135788877777666654 556677899886211
Q ss_pred CCChhHhhhhhhccCc---------cc---cccccCCcchhhhhcchhHHH-HHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q psy4758 73 FISLEERIYIETSLVH---------SS---TVSSSMKVPWKAILTSLPVWA-VLITHLCQNWGYWTLLTEMPSYINSVLQ 139 (318)
Q Consensus 73 ~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~l~~~~g 139 (318)
+.++++.....++... +. ....++.......++.+.... .....+....+.+.+..|.|.+.++ .+
T Consensus 230 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 308 (491)
T 4gc0_A 230 RGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LG 308 (491)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SS
T ss_pred cCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cC
Confidence 0111111110000000 00 000111112222333344333 3333444455556666777777666 67
Q ss_pred ceeechhhhchHHHHHHHHHHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHH---hcCchhH-HHHHHHH
Q psy4758 140 FDIKSNGFLSAAPYLAQWILILVFSWLADYIVAKQILSPTVSRKMWNTIGLWGSAAALVGLS---FVGDNLV-GAITCLT 215 (318)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~ 215 (318)
.+...........++..+++.++++++.||+|||+.+ ..+.....++++.+. ....... .....+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 378 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ----------IIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF 378 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH----------HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh----------ccchHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 7777777777778889999999999999999999866 334444443333322 2222222 2222333
Q ss_pred HHHHHhhhccccccccccccCccc-hhhHHHHHHHHHHHHHhHhhhhhheeeccCCC--ccchHHHHHHHHHHHHHHHHH
Q psy4758 216 LAIAINAGTYTGFLSNHLDLSPNF-AGTLMGFTNGCANIASILGPLFVGFIVTDNTS--VSQWQTIFLIAAAIFFFGNLI 292 (318)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 292 (318)
...++.....+....+..|++|++ |+++.|+.+..+++++.+++.+.+.+.+.... ..++...|++.+++++++.+.
T Consensus 379 ~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 458 (491)
T 4gc0_A 379 YVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALF 458 (491)
T ss_dssp HHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 333334444456667888999998 99999999999999999999988877653110 023445677778888887777
Q ss_pred HHhhcccccC
Q psy4758 293 FLIFGTSEVQ 302 (318)
Q Consensus 293 ~~~~~~~~~~ 302 (318)
.+++.++++.
T Consensus 459 ~~~~~PETkg 468 (491)
T 4gc0_A 459 MWKFVPETKG 468 (491)
T ss_dssp HHHHCCCCTT
T ss_pred HHheecCCCC
Confidence 6555444433
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.73 E-value=4.8e-18 Score=149.69 Aligned_cols=287 Identities=11% Similarity=0.064 Sum_probs=139.9
Q ss_pred CccCCCCCchhHHHH---HHhhHhhHHHhHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCh-h
Q psy4758 2 SKWAPPMERARLFSF---AFSGTQFGNLVTLPVAGLLAGSPWGWPSIFYVSGAVAIVWAAAWCYIGANSPAQHPFISL-E 77 (318)
Q Consensus 2 ~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~l~~~~~gWr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 77 (318)
+|++|+++|+++.+. .+.+.++|.+++|.+++.+.+. .|||+.|++.+++.++..++..+..|+.++++++.++ .
T Consensus 135 ~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (524)
T 2xut_A 135 GDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-FGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPH 213 (524)
T ss_dssp HHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-SCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccch
Confidence 588999999877666 9999999999999999999887 8999999998887766544443322322111110000 0
Q ss_pred H-hhhhhhccCcccc---c-------------------------------------cccCCcchh------------hhh
Q psy4758 78 E-RIYIETSLVHSST---V-------------------------------------SSSMKVPWK------------AIL 104 (318)
Q Consensus 78 ~-~~~~~~~~~~~~~---~-------------------------------------~~~~~~~~~------------~~~ 104 (318)
+ .+......++.+. . ++..+.+++ +..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (524)
T 2xut_A 214 GFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVD 293 (524)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSST
T ss_pred hHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHH
Confidence 0 0000000000000 0 000000110 001
Q ss_pred cchhHHHHHHHHHHHHHHHHH-HHhhhhhhhhhhhccee---echhhhchHHHHHHHHHHHHHHHhH----HHHhhhcCc
Q psy4758 105 TSLPVWAVLITHLCQNWGYWT-LLTEMPSYINSVLQFDI---KSNGFLSAAPYLAQWILILVFSWLA----DYIVAKQIL 176 (318)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~g~l~----dr~g~~~~~ 176 (318)
+.++.+........ ...++. ...+.+.+.....+.+. ...+.+.....++.+++.++.+++. ||.++|...
T Consensus 294 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (524)
T 2xut_A 294 GVRSVLRILVLFAL-VTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTA 372 (524)
T ss_dssp TTTTHHHHHHHHTT-SHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CC
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCCh
Confidence 11222222111111 111111 12222223222122222 1344554444455555555555553 444332211
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcC---------chhHHHHHHHHHHHHHhhhccccccccccccCccc-hhhHHHH
Q psy4758 177 SPTVSRKMWNTIGLWGSAAALVGLSFVG---------DNLVGAITCLTLAIAINAGTYTGFLSNHLDLSPNF-AGTLMGF 246 (318)
Q Consensus 177 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~ 246 (318)
+.....+.++.+++++++.... +........++.+.+... ..+....+..+..|++ ||+++|+
T Consensus 373 ------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~ 445 (524)
T 2xut_A 373 ------LRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVL-VSATGLEFAYSQAPKAMKGTIMSF 445 (524)
T ss_dssp ------HHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHH-HHHHHTTTHHHHCCTTCCTTTHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcHHHHhHHHHH
Confidence 0112455666666666555432 222233333444444333 3455555566666655 9999999
Q ss_pred HHHHHHHHHhHhhhhhheeeccCCCccch---------HHHHHHHHHHHHHHHHHHHhhccc
Q psy4758 247 TNGCANIASILGPLFVGFIVTDNTSVSQW---------QTIFLIAAAIFFFGNLIFLIFGTS 299 (318)
Q Consensus 247 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
.+...++|+.++|.+.+.+.+..+ .+| ...|++.+++.+++.++.+...++
T Consensus 446 ~~~~~~~g~~~g~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 446 WTLSVTVGNLWVLLANVSVKSPTV--TEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARS 505 (524)
T ss_dssp HGGGHHHHHHHHHHHHHHTTSCHH--HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHhccccc--ccccccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887421 112 233666666666666665554443
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.71 E-value=8.3e-17 Score=140.64 Aligned_cols=177 Identities=15% Similarity=0.119 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-----hcceeechhhhchHHHHHHHHHHHHHHHhHHH-HhhhcCcchHH
Q psy4758 107 LPVWAVLITHLCQNWGYWTLLTEMPSYINSV-----LQFDIKSNGFLSAAPYLAQWILILVFSWLADY-IVAKQILSPTV 180 (318)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~ 180 (318)
|.++...+..++....++.+..+++.|+++. +|.+..+.+++.+...++..++.++.|+++|| +|||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~---- 88 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV---- 88 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH----
Confidence 4567777888888889999999999999987 89999999999999999999999999999999 8999976
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhccccccccccccCc-cc--hhhHHHHHHHHHHHHHhH
Q psy4758 181 SRKMWNTIGLWGSAAALVGLSFVGDNLVGAITCLTLAIAINAGTYTGFLSNHLDLSP-NF--AGTLMGFTNGCANIASIL 257 (318)
Q Consensus 181 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~g~~~~~~~~g~~~ 257 (318)
..+.++..++.++....++...+.+..++.+.+.+. ..+....+..|..| ++ |+.+.++.+...++|..+
T Consensus 89 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 161 (491)
T 4aps_A 89 ------FWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGF-LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI 161 (491)
T ss_dssp ------HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH
Confidence 677778888888877776666555555555555444 34455555556554 44 777888899999999999
Q ss_pred hhhhhheeeccCCCccchHHHHHHHHHHHHHHHHHHHhhcc
Q psy4758 258 GPLFVGFIVTDNTSVSQWQTIFLIAAAIFFFGNLIFLIFGT 298 (318)
Q Consensus 258 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (318)
+|.+.+.+.+. .+|+..|++.++..+++.+......+
T Consensus 162 ~~~~~~~l~~~----~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 162 APLIVGAAQEA----AGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999988 68999999988777777666554433
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.68 E-value=3.1e-16 Score=135.39 Aligned_cols=176 Identities=13% Similarity=0.072 Sum_probs=136.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcceeechhhhchHHHHHHHHHHHHHHHhHHHHhhhcCcchHHHHHHH
Q psy4758 106 SLPVWAVLITHLCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADYIVAKQILSPTVSRKMW 185 (318)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~r~~~ 185 (318)
.+.++...+..+........+...+|.+.++ + .++.+.+++.+...++..++.++.|+++||+|||+.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l--------- 95 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL--------- 95 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH---------
Confidence 3455666666666666666677888888877 6 9999999999999999999999999999999999976
Q ss_pred HHHHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHhhhccccccccccccCccc-hhhHHHHHHHHHHHHHhHhhh
Q psy4758 186 NTIGLWGSAAALVGLSF----VGDNLVGAITCLTLAIAINAGTYTGFLSNHLDLSPNF-AGTLMGFTNGCANIASILGPL 260 (318)
Q Consensus 186 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~~~~~ 260 (318)
..+.++.+++.++..+ .++...+.+..++.+.+.+ ...+....+..|..|++ |++++++.+....+|..++|.
T Consensus 96 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 173 (451)
T 1pw4_A 96 -PAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPL 173 (451)
T ss_dssp -HHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHH-HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHH
T ss_pred -HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhh-hccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777 6555544555555555543 34555566667777755 999999999999999999999
Q ss_pred hhheeeccCCCccc-hHHHHHHHHHHHHHHHHHHHhhcc
Q psy4758 261 FVGFIVTDNTSVSQ-WQTIFLIAAAIFFFGNLIFLIFGT 298 (318)
Q Consensus 261 ~~g~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 298 (318)
+.+.+.+. .+ |+..|++.+++.++..++.....+
T Consensus 174 ~~~~l~~~----~g~w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 174 LFLLGMAW----FNDWHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp HHHHHHHH----TCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHH----hccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99998877 56 999999888877776655544433
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.67 E-value=8.9e-16 Score=132.08 Aligned_cols=176 Identities=13% Similarity=0.110 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcceeechhhhchHHHHHHHHHHHHHHHhHHHHhhhcCcchHHHHHHHHHH
Q psy4758 109 VWAVLITHLCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADYIVAKQILSPTVSRKMWNTI 188 (318)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~r~~~~~~ 188 (318)
+....+..+.............|.+.++ +|.+..+.+++.+...++..++.++.|+++||+|||+.+ ..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l----------~~ 96 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI----------IT 96 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH----------HH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH----------HH
Confidence 4445555556666666677778876655 999999999999999999999999999999999999976 66
Q ss_pred HHHHHHHHHHHH---HhcCchhHHHHHHHHHHHHHhhhccccccccccccCccc-hhhHHHHHHHHHHHHHhHhhhhhhe
Q psy4758 189 GLWGSAAALVGL---SFVGDNLVGAITCLTLAIAINAGTYTGFLSNHLDLSPNF-AGTLMGFTNGCANIASILGPLFVGF 264 (318)
Q Consensus 189 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~~~~~~~g~ 264 (318)
+.++.+++.++. ...++.+.+.+..++.+.+.+. ..+....+..|..|++ |++++++.+...++|..++|.+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGC-LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHH-hhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666 5556655455555555555444 4455566666776655 9999999999999999999999999
Q ss_pred ee-ccCCCc---------------------cchHHHHHHHHHHHHHHHHHHHhh
Q psy4758 265 IV-TDNTSV---------------------SQWQTIFLIAAAIFFFGNLIFLIF 296 (318)
Q Consensus 265 l~-~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~ 296 (318)
+. +..+.. .+|+..|++.++..++..++....
T Consensus 176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 176 LILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp HHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 542110 018888887777666655555443
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.65 E-value=1.2e-15 Score=134.32 Aligned_cols=176 Identities=10% Similarity=0.066 Sum_probs=137.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc------ceeechhhhchHHHHHHHHHHHHHHHhHHHH-hhhcCcch
Q psy4758 106 SLPVWAVLITHLCQNWGYWTLLTEMPSYINSVLQ------FDIKSNGFLSAAPYLAQWILILVFSWLADYI-VAKQILSP 178 (318)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~ 178 (318)
+|.++...+..++...+++....++|.|+++.+| +++.+.+++.+...++..++.+++|+++||+ |+|+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~-- 88 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI-- 88 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH--
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--
Confidence 3566777788888888999999999999988889 9999999999999999999999999999999 999876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHhhhccccccccccccCccc-hhhHHHH---HHHHHHH
Q psy4758 179 TVSRKMWNTIGLWGSAAALVGLSFVG-DNLVGAITCLTLAIAINAGTYTGFLSNHLDLSPNF-AGTLMGF---TNGCANI 253 (318)
Q Consensus 179 ~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~---~~~~~~~ 253 (318)
..+.++..++.++....+ +...+....++.+.+.+ ...+....+..+..|++ |+++.+. .+...++
T Consensus 89 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 159 (524)
T 2xut_A 89 --------LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSG-GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF 159 (524)
T ss_dssp --------HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc-ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 667777777777777766 54434444455554443 34455556666766655 8766666 8899999
Q ss_pred HHhHhhhhhheeeccCCCccchHHHHHHHHHHHHHHHHHHHhh
Q psy4758 254 ASILGPLFVGFIVTDNTSVSQWQTIFLIAAAIFFFGNLIFLIF 296 (318)
Q Consensus 254 g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (318)
|..++|.+.+.+.+. .+|+..|++.+++.+++.+.....
T Consensus 160 g~~~g~~~~~~l~~~----~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 160 GSFFASLSMPLLLKN----FGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHHHHTSTHHHHT----SCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999887 689999998888777666555443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.62 E-value=1.4e-15 Score=128.12 Aligned_cols=169 Identities=11% Similarity=0.034 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhcceeechhhhchHHHHHHHHHHHHHHHhHHHHhhhcCcchHHHHHHHHHHH
Q psy4758 110 WAVLITHLCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADYIVAKQILSPTVSRKMWNTIG 189 (318)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~r~~~~~~~ 189 (318)
+.+.+..++...........+|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+.+ ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~----------~~~ 71 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI----------LVG 71 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC----------HHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH----------HHH
Confidence 344556666667777777788887666 899999999999999999999999999999999999988 667
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhccccccccccccCcc-chhhHHHHHHHHHHHHHhHhhhhhheeecc
Q psy4758 190 LWGSAAALVGLSFVGDNLVGAITCLTLAIAINAGTYTGFLSNHLDLSPN-FAGTLMGFTNGCANIASILGPLFVGFIVTD 268 (318)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 268 (318)
..+..++.......++........++.+.+.. ...+....+..|..|+ +|++++++.+....+|..++|.+.+.+.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 72 MSIFMLATLVAVTTSSLTVLIAASAMQGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 77777777776666544434444444444433 3455555666666664 599999999999999999999999999887
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHH
Q psy4758 269 NTSVSQWQTIFLIAAAIFFFGNLIFL 294 (318)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (318)
.+|+..+.+.++..++..+...
T Consensus 151 ----~~~~~~~~~~~~~~~~~~~~~~ 172 (375)
T 2gfp_A 151 ----WNWRACYLFLLVLCAGVTFSMA 172 (375)
T ss_dssp ----HHHHHHHHHHHHHHHHHHCCCC
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHH
Confidence 6899999888877766655333
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.45 E-value=2.3e-15 Score=128.69 Aligned_cols=171 Identities=13% Similarity=0.091 Sum_probs=111.1
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcceeechhhhchHHHHHHHHHHHHHHHhHHHHhhhcCcchHHH
Q psy4758 102 AILTSLPVWAVLITHLCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADYIVAKQILSPTVS 181 (318)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 181 (318)
..+|||+++......+.....+.....++|.|+++++|+++.+.|.+.+...++..++++++|+++||+|||+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l----- 76 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL----- 76 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH-----
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-----
Confidence 468899999998888888888888889999999988999999999999999999999999999999999999976
Q ss_pred HHHHHHHHHHHHHHH---HHHHHhcCch-hHHHHHHHHHHHHHhhhccccccccccccCc---cchhhHHHHHHHHHHHH
Q psy4758 182 RKMWNTIGLWGSAAA---LVGLSFVGDN-LVGAITCLTLAIAINAGTYTGFLSNHLDLSP---NFAGTLMGFTNGCANIA 254 (318)
Q Consensus 182 r~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~g 254 (318)
..+..+..+. .......+.. ..........+.. .+...+.......+..+ ++++.+.|..+...++|
T Consensus 77 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 150 (417)
T 2cfq_A 77 -----LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY-LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVG 150 (417)
T ss_dssp -----HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSS-TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHH
Confidence 3333332221 1110111000 0000000110000 01111111111222222 34677788888888999
Q ss_pred HhHhhhhhheeeccCCCccchHHHHHHHHHHHHH
Q psy4758 255 SILGPLFVGFIVTDNTSVSQWQTIFLIAAAIFFF 288 (318)
Q Consensus 255 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 288 (318)
..++|.+.+++.+. +|+..|++.++..++
T Consensus 151 ~~~~~~l~~~l~~~-----~~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 151 WALGASIVGIMFTI-----NNQFVFWLGSGCALI 179 (417)
T ss_dssp HHHHHHHHHHHHHH-----CSHHHHTTTTTTTTT
T ss_pred HHHHHHHHHHHHHh-----chhHHHHHHHHHHHH
Confidence 99999999998764 467777766555433
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.01 E-value=3.3e-09 Score=92.43 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=96.8
Q ss_pred eechhhhchHHHHHHHHHHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHh------------------c
Q psy4758 142 IKSNGFLSAAPYLAQWILILVFSWLADYIVAKQILSPTVSRKMWNTIGLWGSAAALVGLSF------------------V 203 (318)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~------------------~ 203 (318)
..+.|++.+...++.++|++++|+++||+|||+.+ .++.++..++.++..+ .
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l----------~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a 123 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL----------KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLA 123 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH----------HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH----------HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHh
Confidence 34567788888899999999999999999999977 6666666666666553 2
Q ss_pred CchhHHHHHHHHHHHHHhhhccccccccccccCccc-hhhHHHHHHHHHHHHHhHhhhhhheeeccCC----CccchHHH
Q psy4758 204 GDNLVGAITCLTLAIAINAGTYTGFLSNHLDLSPNF-AGTLMGFTNGCANIASILGPLFVGFIVTDNT----SVSQWQTI 278 (318)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~~----~~~~~~~~ 278 (318)
++...+.+.-++.|.+.+. ..+....+..|..|.+ |+...++.+.....|..+++.+...+.+... ....|+..
T Consensus 124 ~~~~~l~~~R~l~G~g~G~-~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGL-ASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYM 202 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHH
Confidence 3333355556666666544 4555666777777766 9999999999888888888777665544321 11356655
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4758 279 FLIAAAIFFFGNLIFL 294 (318)
Q Consensus 279 ~~~~~~~~~~~~~~~~ 294 (318)
+.......++..+...
T Consensus 203 ~~~~~~~~~~~~~~~~ 218 (491)
T 4gc0_A 203 FASECIPALLFLMLLY 218 (491)
T ss_dssp HHTTHHHHHHHHHHGG
T ss_pred hhhhhhhhhhhhhhhh
Confidence 5555554444444333
No 15
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=52.63 E-value=1.1e+02 Score=26.27 Aligned_cols=55 Identities=16% Similarity=0.033 Sum_probs=30.2
Q ss_pred cCCCCCc-hhHHHHHHhhHhhHHHhHHH-HHHHHhCCCCCchHHHHHHHHHHHHHHHH
Q psy4758 4 WAPPMER-ARLFSFAFSGTQFGNLVTLP-VAGLLAGSPWGWPSIFYVSGAVAIVWAAA 59 (318)
Q Consensus 4 ~~~~~~r-~~~~~~~~~~~~~G~~~~~~-~~~~l~~~~~gWr~~f~~~~~~~~~~~~~ 59 (318)
-.|+++| .....+.....+....++.. +++.+.. ..+|+..++...+-.++..++
T Consensus 19 pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~-GLs~~~a~lai~lG~li~~~~ 75 (501)
T 2jln_A 19 PTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTS-SFQVWQVIVAIAAGCTIAVIL 75 (501)
T ss_dssp CCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHH
Confidence 3566666 45555555555555444444 4444444 378888876655444443333
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=43.90 E-value=13 Score=16.24 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=10.3
Q ss_pred HHHHhHHHHhhhc
Q psy4758 162 VFSWLADYIVAKQ 174 (318)
Q Consensus 162 ~~g~l~dr~g~~~ 174 (318)
+.|.++.++||+.
T Consensus 2 lfgklikkfgrka 14 (26)
T 2g9p_A 2 LFGKLIKKFGRKA 14 (26)
T ss_dssp HHHHHHHHHTSHH
T ss_pred cHHHHHHHHhHHH
Confidence 3578899999884
No 17
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=41.49 E-value=46 Score=18.56 Aligned_cols=12 Identities=8% Similarity=0.207 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy4758 280 LIAAAIFFFGNL 291 (318)
Q Consensus 280 ~~~~~~~~~~~~ 291 (318)
.+.+++.++.++
T Consensus 18 svl~GLllL~li 29 (54)
T 2knc_A 18 GVLGGLLLLTIL 29 (54)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 18
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=41.39 E-value=34 Score=20.54 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=16.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy4758 41 GWPSIFYVSGAVAIVWAAAWCYIGANSPAQH 71 (318)
Q Consensus 41 gWr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (318)
||-.+|.+...+.++..-.+-..+||..++.
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~a 61 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQA 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccC
Confidence 4555555544444444444556778865543
No 19
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=35.96 E-value=1.9e+02 Score=24.01 Aligned_cols=17 Identities=12% Similarity=-0.132 Sum_probs=8.6
Q ss_pred HHHHHHHHHhHHHHhhh
Q psy4758 157 WILILVFSWLADYIVAK 173 (318)
Q Consensus 157 ~~~~~~~g~l~dr~g~~ 173 (318)
.++......+++.+|++
T Consensus 292 ~~~~a~~p~i~~~~g~~ 308 (460)
T 3mkt_A 292 SIGAAVSIRVGHKLGEQ 308 (460)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 33444445566666544
No 20
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=33.99 E-value=54 Score=23.85 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhcccccC
Q psy4758 274 QWQTIFLIAAAIFFFGNLIFLIFGTSEVQ 302 (318)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
.|-.+|-+.+++.+++.+-...+.|++++
T Consensus 136 ~Y~lpFElaSvlLLvAmIGAIvLarr~~~ 164 (184)
T 3rko_J 136 PYVLAVELASMLLLAGLVVAFHVGREERA 164 (184)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 35678888888877777777666555443
No 21
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=33.78 E-value=57 Score=19.76 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=18.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy4758 40 WGWPSIFYVSGAVAIVWAAAWCYIGANSPAQH 71 (318)
Q Consensus 40 ~gWr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (318)
.||-..|.+...+.++..-..-..+||..++.
T Consensus 31 AG~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~a 62 (82)
T 2nrg_A 31 AGWAGGVFFGTLLLIGFFRVVGRMLPIQENQA 62 (82)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHSSTTTTTCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCchhcccC
Confidence 35666666655555554444556788865543
No 22
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=29.48 E-value=68 Score=16.96 Aligned_cols=10 Identities=20% Similarity=-0.111 Sum_probs=4.0
Q ss_pred HHHHHhhccc
Q psy4758 290 NLIFLIFGTS 299 (318)
Q Consensus 290 ~~~~~~~~~~ 299 (318)
+..+++++++
T Consensus 29 ~~~~~~~RRr 38 (44)
T 2ks1_B 29 LGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3333444443
No 23
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=29.38 E-value=68 Score=16.96 Aligned_cols=7 Identities=0% Similarity=-0.102 Sum_probs=2.8
Q ss_pred HHhhccc
Q psy4758 293 FLIFGTS 299 (318)
Q Consensus 293 ~~~~~~~ 299 (318)
+++++++
T Consensus 31 ~~~~RRR 37 (44)
T 2l2t_A 31 AVYVRRK 37 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3344443
No 24
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=27.52 E-value=1.1e+02 Score=20.84 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=12.2
Q ss_pred HhhHHHhHHHHHHHHhCCCCCchHH
Q psy4758 21 TQFGNLVTLPVAGLLAGSPWGWPSI 45 (318)
Q Consensus 21 ~~~G~~~~~~~~~~l~~~~~gWr~~ 45 (318)
.++++++..+++..+.....+|+-.
T Consensus 64 ~~l~pv~~~l~g~l~lgE~ls~~~~ 88 (137)
T 2i68_A 64 SGVGIVLISLLSWGFFGQRLDLPAI 88 (137)
T ss_dssp HHHHHHHHHHHHHHHHC------CH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4667777777776665543555543
No 25
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=26.98 E-value=1.1e+02 Score=24.03 Aligned_cols=23 Identities=9% Similarity=-0.180 Sum_probs=15.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHh
Q psy4758 42 WPSIFYVSGAVAIVWAAAWCYIG 64 (318)
Q Consensus 42 Wr~~f~~~~~~~~~~~~~~~~~~ 64 (318)
|.|++++.=+++.+++.+.+.++
T Consensus 232 ~~WVy~vgPi~Ga~la~~~y~~l 254 (281)
T 1ldf_A 232 YFLVPLFGPIVGAIVGAFAYRKL 254 (281)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHhHHHHHHHHHHHHHHHHH
Confidence 57888887777776666555444
No 26
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=26.39 E-value=64 Score=15.65 Aligned_cols=12 Identities=8% Similarity=0.077 Sum_probs=7.4
Q ss_pred HHHHHhcCCCCC
Q psy4758 59 AWCYIGANSPAQ 70 (318)
Q Consensus 59 ~~~~~~~~~~~~ 70 (318)
....+++|+|+-
T Consensus 18 FFAI~FRePPri 29 (32)
T 3arc_T 18 FFAIFFREPPRI 29 (32)
T ss_dssp HHHHHTSCCCCC
T ss_pred HHhhhhcCCCCC
Confidence 444566787754
No 27
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=24.75 E-value=96 Score=19.19 Aligned_cols=22 Identities=5% Similarity=0.232 Sum_probs=15.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q psy4758 42 WPSIFYVSGAVAIVWAAAWCYI 63 (318)
Q Consensus 42 Wr~~f~~~~~~~~~~~~~~~~~ 63 (318)
||-+-++.++.+++++.+..+.
T Consensus 16 Wkkis~~va~P~v~l~~~n~y~ 37 (85)
T 1v54_G 16 WRFLTFGLALPSVALCTLNSWL 37 (85)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877787777765554443
No 28
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=22.94 E-value=90 Score=24.81 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=16.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHh
Q psy4758 40 WGWPSIFYVSGAVAIVWAAAWCYIG 64 (318)
Q Consensus 40 ~gWr~~f~~~~~~~~~~~~~~~~~~ 64 (318)
++..|.|++.=+++.+++.+.+.++
T Consensus 205 w~~~WVy~vgPiiGailaa~ly~~l 229 (301)
T 2zz9_A 205 WENHWIYWVGPIIGAVLAGALYEYV 229 (301)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred CcceeeeeeHHHHHHHHHHHHHHHH
Confidence 6778888887777766655555444
No 29
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=21.53 E-value=75 Score=25.65 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=17.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhc
Q psy4758 40 WGWPSIFYVSGAVAIVWAAAWCYIGA 65 (318)
Q Consensus 40 ~gWr~~f~~~~~~~~~~~~~~~~~~~ 65 (318)
..|++.|++..+++++.+++.+++++
T Consensus 309 l~~~~gy~~~l~~m~~~~~~~~~~fk 334 (339)
T 4ev6_A 309 ANNPQGFWLVMALMVVIIMIFVYIFR 334 (339)
T ss_dssp SSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888776666666565555554
No 30
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=21.32 E-value=68 Score=24.90 Aligned_cols=25 Identities=4% Similarity=0.015 Sum_probs=17.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHh
Q psy4758 40 WGWPSIFYVSGAVAIVWAAAWCYIG 64 (318)
Q Consensus 40 ~gWr~~f~~~~~~~~~~~~~~~~~~ 64 (318)
+.+.|+|++.=+++.+++.+.+.++
T Consensus 198 ~~~~Wvy~vgP~~Ga~la~~~y~~l 222 (263)
T 2b6o_A 198 FTNHWVYWVGPVIGAGLGSLLYDFL 222 (263)
T ss_dssp CTTCTHHHHHHHHHHHHHHHHHHTT
T ss_pred ccceeHHHHHHHHHHHHHHHHHHHH
Confidence 6778899987777776666655544
Done!