RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4758
(318 letters)
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 232 bits (594), Expect = 4e-73
Identities = 117/308 (37%), Positives = 165/308 (53%), Gaps = 2/308 (0%)
Query: 3 KWAPPMERARLFSFAFSGTQFGNLVTLPVAGLLAGSPWGWPSIFYVSGAVAIVWAAAWCY 62
KWAPP ER+RL + SG Q G + LP++G L S GWP IFYV G V W+ W
Sbjct: 158 KWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFV 217
Query: 63 IGANSPAQHPFISLEERIYIETSLVHSSTVSSSMKVPWKAILTSLPVWAVLITHLCQNWG 122
A+ P+ HP IS E+ YI +SL S+ +P KAI SLPVWA+ W
Sbjct: 218 FPADDPSIHPCISKFEKKYINSSLQ-GQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWL 276
Query: 123 YWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADYIVAKQILSPTVSR 182
Y L T +P++I+ VL+ K NG LS+ PYL W+ + +LAD++ + + LS T +R
Sbjct: 277 YTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAAR 336
Query: 183 KMWNTIGLWGSAAALVGLSFVGDNLVGAITCLTLAIAINAGTYTGFLSNHLDLSPNFAGT 242
K++N IG G L ++ I LTLA A+++G G L N LDL+P F G
Sbjct: 337 KIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGF 396
Query: 243 LMGFTNGCANIASILGPLFVGFIVTDNTSVSQWQTIFLIAAAIFFFGNLIFLIFGTSEVQ 302
+ G T I ++ G I++ + S + W +FLI A + + +LIFG++E Q
Sbjct: 397 IKGITGLPGFIGGLIASTLAGNILSQD-SKNVWLIVFLIMAFVNILCVIFYLIFGSAERQ 455
Query: 303 PWNDSEYD 310
W E D
Sbjct: 456 DWAKEEKD 463
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 91.2 bits (227), Expect = 1e-20
Identities = 65/301 (21%), Positives = 109/301 (36%), Gaps = 16/301 (5%)
Query: 2 SKWAPPMERARLFSFAFSGTQFGNLVTLPVAGLLAGSPWGWPSIFYVSGAVAIVWAAAWC 61
+ W P ERA S S G ++ P+ G + + W F + G + I+W W
Sbjct: 108 ASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH-FSWQWAFIIEGVLGIIWGVLW- 165
Query: 62 YIGANSPAQHPFISLEERIYI------ETSLVHSSTVSSSMKVPWKAILTSLPVWAVLIT 115
P Q EE YI + ++ K +L VW + +
Sbjct: 166 LKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQI--KELLKDRRVWGLALG 223
Query: 116 HLCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADYIVAKQI 175
N G LT P+Y+ I GF+++ P + +I +++ L+D + ++
Sbjct: 224 QFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRG 282
Query: 176 LSPTVSRKMWNTIGLWGSAAALVGLSFVGDNLVGAITCLTLAIAINAGTYTGFLSNHLDL 235
S +RK GL S A+ L +S++
Sbjct: 283 KSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDN--A 340
Query: 236 SPNFAGTLMGFTNGCANIASILGPLFVGFIVTDNTSVSQWQTIFLIAAAIFFFGNLIFLI 295
N AG G N N+ I+GP+ +G I S + ++ AA+ G L +L+
Sbjct: 341 PGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGS---FAGALMVVAALALIGALSYLL 397
Query: 296 F 296
Sbjct: 398 L 398
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 67.3 bits (165), Expect = 1e-12
Identities = 59/296 (19%), Positives = 101/296 (34%), Gaps = 56/296 (18%)
Query: 1 MSKWAPPMERARLFSFAFSGTQFGNLVTLPVAGLLAGSPWGWPSIFYVSGAVAIVWAAAW 60
+++W PP ER R +G G L+ + GLLA S GW +F + + ++ A
Sbjct: 112 IAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES-LGWRWLFLILAILGLLLALLL 170
Query: 61 CYIGANSPAQHPFISLEERIYIETSLVHSSTVSSSMKVPWKAILTSLPVWAVLITHLCQN 120
+ + + + +
Sbjct: 171 ------------------------------------------LFLLRLLLLLALAFFLLS 188
Query: 121 WGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADYIVAKQILSPTV 180
+GY+ LLT +P Y+ VL G L + L + L+ L+D +
Sbjct: 189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL---------G 239
Query: 181 SRKMWNTIGLWGSAAALVGLSFVGDNLVGAITCLTLAIAINAGTYTGFLSNHLDLSPNFA 240
R++ IGL +A L+ L+ + + L L + P
Sbjct: 240 RRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEAR 299
Query: 241 GTLMGFTNGCANIASILGPLFVGFIVTDNTSVSQWQTIFLIAAAIFFFGNLIFLIF 296
GT G N ++ LGPL G ++ + +FLI AA+ L+ L+
Sbjct: 300 GTASGLFNTFGSLGGALGPLLAGLLLDTGG----YGGVFLILAALALLAALLLLLL 351
Score = 33.8 bits (78), Expect = 0.092
Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 17/189 (8%)
Query: 109 VWAVLITHLCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLAD 168
+ + + L +P L G + +A L + L+ +L+D
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSD 59
Query: 169 YIVAKQILSPTVSRKMWNTIGLWGSAAALVGLSFVGDNLVGAITCLTLAIAINAGTYTGF 228
R+ +GL A + L+F +L + L Y
Sbjct: 60 RF----------GRRRVLLLGLLLFALGSLLLAFA-SSLWLLLVGRFLLGLGGGALYPAA 108
Query: 229 LSNHLDLSPNFA-GTLMGFTNGCANIASILGPLFVGFIVTDNTSVSQWQTIFLIAAAIFF 287
+ + P G +G + + ++LGPL G + W+ +FLI A +
Sbjct: 109 AALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA----ESLGWRWLFLILAILGL 164
Query: 288 FGNLIFLIF 296
L+ L
Sbjct: 165 LLALLLLFL 173
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 65.9 bits (161), Expect = 4e-12
Identities = 56/259 (21%), Positives = 93/259 (35%), Gaps = 22/259 (8%)
Query: 1 MSKWAPPMERARLFSFAFSGTQFGNLVTLPVAGLLAGSPWGWPSIFYVSGAVAIVWAAAW 60
++ W PP ER R +G G + + GLLA +GW + F + +A++ A
Sbjct: 110 IADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASL-FGWRAAFLILAILALLAAVLA 168
Query: 61 CYIGANSPAQHPFISLEERIYIETSLVHSSTVSSSMKVPWKAILTSLPVWAVLITHLCQN 120
+ P + E + VP +L PV +L+ L
Sbjct: 169 ALLLPRPPPESKRPKPAEEA-------------PAPLVPAWKLLLRDPVLWLLLALLLFG 215
Query: 121 WGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADYIVAKQILSPTV 180
+ ++ LLT +P Y VL G L L I L+ L+D + ++ L +
Sbjct: 216 FAFFALLTYLPLYQE-VLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLAL 274
Query: 181 SRKMWNTIGLWGSAAALVGLSFVGDNLVGAITCLTLAIAINAGTYTGFLSNHLDLSPNFA 240
+ L AL+ L+ L+ A+ L + +S+
Sbjct: 275 L-----LLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDL--APKEER 327
Query: 241 GTLMGFTNGCANIASILGP 259
GT G N ++ LGP
Sbjct: 328 GTASGLYNTAGSLGGALGP 346
Score = 43.6 bits (103), Expect = 8e-05
Identities = 35/187 (18%), Positives = 61/187 (32%), Gaps = 18/187 (9%)
Query: 112 VLITHLCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADYIV 171
+ + G L +P Y+ L G L A L + + L+D
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 172 AKQILSPTVSRKMWNTIGLWGSAAALVGLSFVGDN--LVGAITCLTLAIAINAGTYTGFL 229
+++L IGL A L+ L F L+ L +
Sbjct: 61 RRRVLL----------IGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALI 110
Query: 230 SNHLDLSPNFAGTLMGFTNGCANIASILGPLFVGFIVTDNTSVSQWQTIFLIAAAIFFFG 289
++ P G +G + + + LGPL G + S+ W+ FLI A +
Sbjct: 111 ADW--FPPEERGRALGLLSAGFGLGAALGPLLGGLLA----SLFGWRAAFLILAILALLA 164
Query: 290 NLIFLIF 296
++ +
Sbjct: 165 AVLAALL 171
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 52.0 bits (125), Expect = 2e-07
Identities = 50/274 (18%), Positives = 94/274 (34%), Gaps = 19/274 (6%)
Query: 1 MSKWAPPMERARLFSFAFSGTQFGNLVTLPVAGLLAGSPWGWPSIFYVSGAVAIVWAAAW 60
++KW ER SF G + P+ + W +F V G +AI+ +
Sbjct: 108 VTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLIC 167
Query: 61 CYIGANSPAQHPFISLEERIYIETSLVHSSTVSSSMKVPWKA----ILTSLPVWAVLITH 116
+ +SP EE + E + + + +L + +W + + +
Sbjct: 168 FLLLRDSPQSCGLPPAEE-MPNEEPDGDAEKKEEELT-KKQIFLQYVLLNKVLWYISLGY 225
Query: 117 LCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADYIVAKQIL 176
+ +L P Y+ F + + L + L+ WL+D + +
Sbjct: 226 VFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG 285
Query: 177 SPTVSRK---MWNTIGLWGSAAALVGLSFVGDNLVGAITCLTLAIAINAGTYTGFLSNHL 233
V + + + W + AA + L+ I L + G
Sbjct: 286 PLAVFFMALIIVSLLVYWLNPAA--------NPLMDLICLFALGFLVY-GPQMLIGVIAS 336
Query: 234 DLSPNFA-GTLMGFTNGCANIASILGPLFVGFIV 266
+L+P A GT GF A + IL L +G++
Sbjct: 337 ELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLA 370
Score = 32.7 bits (75), Expect = 0.23
Identities = 38/181 (20%), Positives = 60/181 (33%), Gaps = 21/181 (11%)
Query: 146 GFLSAAPYLAQWILILVFSWLADYIVAKQILSPTVSRKMWNTIGLWGSAAALVGLSFVGD 205
G L ++ +A I V ++D + L IGL A + F
Sbjct: 33 GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLP----------IGLILCAIVNLFFGFSTS 82
Query: 206 NLVGAITCLTLAIAINAGTYTGFLSNHLDLSPNFAGTLMGFTNGCANIASILGPLFVGFI 265
V A I G + S + GT + F N N+ L P V F
Sbjct: 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFG 142
Query: 266 VTDNTSVSQWQTIFLIAAAIFFFGNLIFLIF--------GTSEVQPWNDSEYDGDKKKSR 317
+ + S W +F++ I +LI + G + + E DGD +K
Sbjct: 143 IAELYS---WHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKE 199
Query: 318 K 318
+
Sbjct: 200 E 200
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 44.1 bits (105), Expect = 5e-05
Identities = 53/297 (17%), Positives = 103/297 (34%), Gaps = 38/297 (12%)
Query: 5 APPMERARLFSFAFSGTQFGNLVTLPVAGLLAGSPWGWPSIFYVSGAVA-IVWAAAWCYI 63
PP +R R + F+G ++ +P+ L +GW + F +A + W +
Sbjct: 130 VPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL-FGWRATFLAIAVLALLALLLLWKLL 188
Query: 64 GANSPAQHPFISLEERIYIETSLVHSSTVSSSMKVPWKAILTSLPVWAVLITHLCQNWGY 123
+ + L + +L V L+ G+
Sbjct: 189 PPSEISGSLPGPLRTLL---------------------RLLRRPGVLLGLLATFLFMTGH 227
Query: 124 WTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADYIVAKQILSPTVSRK 183
+ L T + ++ SV F + + + A +A +I L+ LAD + +++ +
Sbjct: 228 FALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALL--- 284
Query: 184 MWNTIGLWGSAAALVGLSFVGDNLVGAITCLTLAIAINAGTYTGFLSNHLDLSPNFAGTL 243
A AL+ L+F G + A+ L L + G + L+P+ A
Sbjct: 285 --------LLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLA 336
Query: 244 MGFTNGCANIASILGPLFVGFIVTDNTSVSQWQTIFLIAAAIFFFGNLIFLIFGTSE 300
N+ LG +G +V D + + AA+ L+ L+ +
Sbjct: 337 GSLNVAAFNLGIALGA-ALGGLVLDALG---YAATGWVGAALLLLALLLALLSARKD 389
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 39.6 bits (93), Expect = 0.002
Identities = 58/309 (18%), Positives = 110/309 (35%), Gaps = 30/309 (9%)
Query: 1 MSKWAPPMERARLFSFAFSGTQFGNLVTLPVAGL-LAGSPWGWPSIFYVSGAVAIVWAAA 59
++ W ER +S + G + VA L GW + FY G +AI+ A
Sbjct: 142 ITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALI 201
Query: 60 WCYIGANSPAQHPFISLEE------RIYIETSLVHSSTVSSSMKVPWKAILTSLPVWAVL 113
++ + P +EE IY E + ++ ++ K +L + +W +
Sbjct: 202 LLFLLRDRPQSEGLPPIEEYRGDPLEIYEEE---KENEGLTAWQIFVKYVLKNKLIWLLA 258
Query: 114 ITHLCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILI---LVFSWLADYI 170
+ ++ + + P Y++ V F + + A L + + L+ WL+D +
Sbjct: 259 LANVFVYVVRYGINDWGPLYLSEVKGFSLVKANW---AISLFEVAGLPGTLLAGWLSDKL 315
Query: 171 VAKQILSPTVSRKMWNTIGLWGSAAALVGLSFVGD-NLVGAITCLTLAIAINAGTYTGFL 229
+ R I + A+LV + + + L + + G
Sbjct: 316 FKGR-------RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIG 368
Query: 230 SNHLDLSPNFA-GTLMGFTNGCANIA-SILGPLFVGFIVTDNTSVSQWQTIFLIAAAIFF 287
+ P A GT GF A + + L L +G+I D W F++ +
Sbjct: 369 LAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIA-DTWG---WDGGFIVLSIAAL 424
Query: 288 FGNLIFLIF 296
L+ L
Sbjct: 425 LAILLLLPV 433
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 37.6 bits (88), Expect = 0.007
Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 35/227 (15%)
Query: 9 ERARLFSFAFSGTQFGNL----VTLPVAGLLAGSPW--GWPSIFYVSGAVAIVWAAAWCY 62
ER L S+ G G L + P+ LL G G+ + +A+V +
Sbjct: 134 ERTSLASYRRIGATIGGLLVAVIAPPLVALLGGGNGAKGYFLAALIIAILAVV-----GF 188
Query: 63 IGANSPAQHPFISLEERIYIETSLVHSSTVSSSMKVPWKAILTSLPVWAVLITHLCQNWG 122
+ F +ER+ + S++ +KA+ + P+ +L+ +L
Sbjct: 189 LIC-------FAGTKERVSVPP----EQKEKVSLRDMFKALFKNRPLLILLLLYLLNALA 237
Query: 123 YWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADYIVAKQILSPTVSR 182
+ Y VL + L +A + ++ WLA K+
Sbjct: 238 MAVRNGLLLYYFTYVLGNAGLFSVLLLIGT-IAAILGAPLWPWLAKRFGKKRTFL----- 291
Query: 183 KMWNTIGLWGSAAALVGLSFVGDNLVGAITCLTLAIAINAGTYTGFL 229
+G+ +A LV L F+ + L L + G L
Sbjct: 292 -----LGMLLAAIGLVLLFFLPPGSL--WLFLVLVVLAGIGLGLATL 331
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 36.2 bits (84), Expect = 0.018
Identities = 48/285 (16%), Positives = 94/285 (32%), Gaps = 35/285 (12%)
Query: 1 MSKWAPPMERARLFSFAFSGTQFGNLVTLPVAGLLAG---SPWGWPSIFYVSGAVAIVWA 57
+S++AP R F G G V G LAG +GW S+FYV G ++
Sbjct: 130 VSEYAPKRFRGTAVGLMFCGYPIGAAV----GGFLAGWLIPVFGWRSLFYVGGIAPLLLL 185
Query: 58 A--------AWCYIGANSPAQHPFISLEERIYIETSLVHSSTVSSSMKVPWKAIL----- 104
+ ++ + P I ++ + + + +++
Sbjct: 186 LLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQ 245
Query: 105 --TSLPVWAVLITHLCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILV 162
T+ + + + G + L +P + L F + A I ++
Sbjct: 246 GKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSII 304
Query: 163 FSWLADYIVAKQILSPTVSRKMWNTIGLWGSAAALVGLSFVGDNLVGAITCLTLAIAINA 222
F WLAD + + L A V + + + +A
Sbjct: 305 FGWLADRLGPRVTAL-----------LLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVN 353
Query: 223 GTYTGFLSNHLDLSPNFA-GTLMGFTNGCANIASILGPLFVGFIV 266
G +G + P T +G+ G + +I+GP+ G+++
Sbjct: 354 GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYLL 398
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 34.9 bits (81), Expect = 0.044
Identities = 40/227 (17%), Positives = 75/227 (33%), Gaps = 31/227 (13%)
Query: 7 PMERARLFSFAFSGTQFGNLVT----LPVAGLLAGSP--WGWPSIFYVSGAVAIVWAAAW 60
P ERA L S+ G L+ P+ L G G+ V G + ++ +
Sbjct: 144 PQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVI-LLLF 202
Query: 61 CYIGANSPAQHPFISLEERIYIETSLVHSSTVSSSMKVPWKAILTSLPVWAVLITHLCQN 120
C F +++ER+ + V +K + I + P+ +L+ +L
Sbjct: 203 C-----------FFNVKERVVETQ--PTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLF 249
Query: 121 WGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADYIVAKQILSPTV 180
+ + M Y+ VL L A I ++++ L K++
Sbjct: 250 IAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKL----- 304
Query: 181 SRKMWNTIGLWGSAAALVGLSFVG-DNLVGAITCLTLAIAINAGTYT 226
+ L A + L F ++V + L +A
Sbjct: 305 ---FLIGLLLL--AVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346
>gnl|CDD|178712 PLN03168, PLN03168, chalcone synthase; Provisional.
Length = 389
Score = 34.6 bits (79), Expect = 0.063
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 167 ADYIVAKQI-LSPTVSRKMWNTIGLWGSAAALVGLSFVGDNLVGAITCLTLAIAINAGTY 225
AD+ +AK + L PTV R M G +G A+ L + +N GA L +A + A TY
Sbjct: 139 ADHALAKLLGLKPTVKRVMMYQTGCFGGASVLRVAKDLAENNKGA-RVLAVASEVTAVTY 197
Query: 226 TGFLSNHLD 234
NHLD
Sbjct: 198 RAPSENHLD 206
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 34.2 bits (79), Expect = 0.085
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 2 SKWAPPMERARLFSFAFSGTQFGNLVTLPVAGLLAGSPWGWPSIFYVSGAVAIV 55
S+ P R S + G FG + V G+LA W IFYV G ++
Sbjct: 129 SEAVGPRLRGTAVSLMYCGVPFGGALA-SVIGVLAAGDAAWRHIFYVGGVGPLL 181
>gnl|CDD|132512 TIGR03472, HpnI, hopanoid biosynthesis associated glycosyl
transferase protein HpnI. This family of genes include
a glycosyl transferase, group 2 domain (pfam00535) which
are responsible, generally for the transfer of
nucleotide-diphosphate sugars to substrates such as
polysaccharides and lipids. The member of this clade
from Acidithiobacillus ferrooxidans ATCC 23270
(AFE_0974) is found in the same locus as squalene-hopene
cyclase (SHC, TIGR01507) and other genes associated with
the biosynthesis of hopanoid natural products.
Similarly, in Ralstonia eutropha JMP134 (Reut_B4902)
this gene is adjacent to HpnAB, IspH and HpnH
(TIGR03470), although SHC itself is elsewhere in the
genome. Notably, this gene (here named HpnI) and three
others form a conserved set (HpnIJKL) which occur in a
subset of all genomes containing the SHC enzyme. This
relationship was discerned using the method of partial
phylogenetic profiling. This group includes Zymomonas
mobilis, the organism where the initial hopanoid
biosynthesis locus was described consisting of the genes
HpnA-E and SHC (HpnF). Continuing past SHC are found a
phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and
another radical SAM enzyme (ZMO0874), HpnH. Although
discontinuous in Z. mobilis, we continue the gene symbol
sequence with HpnIJKL. Hopanoids are known to feature
polar glycosyl head groups in many organisms.
Length = 373
Score = 33.5 bits (77), Expect = 0.11
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 3 KWAPPMERARLFSFAFSGTQFGNLVTLPVAGLLAGSPWGWPSIFYVSGAVAIVWAAAWCY 62
+W+ + +A S V L V LL G+ W WP V+ A+A
Sbjct: 267 RWSRTIRAVNPVGYAGSFITQP--VPLAVLALLLGAAWAWPL---VAAALAARALLRLVM 321
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 33.5 bits (76), Expect = 0.14
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 105 TSLPVWAVLITHLCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFS 164
SL W + + C+ WG W+ L S++ + +S + + L W LI + S
Sbjct: 404 NSLAEWTL---NDCEGWGMWSKL--------SIMWKNRRSAFLRAKSRALGHWALISICS 452
Query: 165 WLADYIV 171
A I
Sbjct: 453 AAAGSIA 459
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 31.9 bits (73), Expect = 0.18
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 5 APPMERARLFSFAFSGTQFGNLVTLPVAGLLAGSPWGWPSIFYVSGAVAIVWAAAWCYI 63
PP ER +G G L+ P+ G+LA GW + F +A+ ++
Sbjct: 80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF-LGWRAPFLFLAILALAAFILLAFL 137
>gnl|CDD|183131 PRK11427, PRK11427, multidrug efflux system protein MdtO;
Provisional.
Length = 683
Score = 33.3 bits (76), Expect = 0.19
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 170 IVAKQILSPTVSRKMWNTIG--LWGSAAALVGLSFVG---DNLVGAITCLTLAIAINAGT 224
IVA + + +KM G G+ AL+ V DN+V + L + A
Sbjct: 385 IVANPNVGSSY-QKMVLRFGGAFCGAILALLFTLLVMPWLDNIVELLFVLAPIFLLGAWI 443
Query: 225 YTGFLSNHLDLSPNFAGTLMGFTNGCANIASILGPLF 261
T S ++ GT M T A + ++ GP++
Sbjct: 444 ATS--SERS----SYIGTQMVVTFALATLENVFGPVY 474
>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ;
Validated.
Length = 392
Score = 31.6 bits (72), Expect = 0.53
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 32 AGLLAGSPWGWPSIFYVSGAVAIVWAAAWCYIGAN 66
A +LAG P+ W SI+ G ++ W A +G N
Sbjct: 152 AAVLAGKPYVWGSIYRFEGQASVFWEDAPDGLGLN 186
>gnl|CDD|217536 pfam03403, PAF-AH_p_II, Platelet-activating factor acetylhydrolase,
isoform II. Platelet-activating factor acetylhydrolase
(PAF-AH) is a subfamily of phospholipases A2,
responsible for inactivation of platelet-activating
factor through cleavage of an acetyl group. Three known
PAF-AHs are the brain heterotrimeric PAF-AH Ib, whose
catalytic beta and gamma subunits are aligned in
pfam02266, the extracellular, plasma PAF-AH (pPAF-AH),
and the intracellular PAF-AH isoform II (PAF-AH II).
This family aligns pPAF-AH and PAF-AH II, whose
similarity was previously noted.
Length = 372
Score = 30.8 bits (70), Expect = 0.94
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 147 FLSAAPYLAQWILILVFSWLADYIVAKQILSPTVSRKMWNTIGLWGSA-AALVGLSFVGD 205
S A +I F W + K+I SP RKM I + GS FV
Sbjct: 262 QYSQARQPLLFINSEKFQWNENIFKMKKIYSPDKERKM---ITIKGSVHQNFSDFPFVTG 318
Query: 206 NLVGAITCL------TLAIAINAGTYTGFLSNHLDLSPNF 239
++G + L A+ + FL HLDL +F
Sbjct: 319 KIIGKMLKLKGEIDPYEAMDLANKASLAFLQKHLDLHKDF 358
>gnl|CDD|234121 TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD
subunit. Members of this protein family are NrfD, a
highly hydrophobic protein encoded in the nrf operon,
which encodes cytochrome c nitrite reductase. This
multiple heme-containing enzyme can reduce nitrite to
ammonia. Members belong to a broader PFAM protein
family, pfam03916, which also contains an NrfD-related
subunit of polysulphide reductase [Energy metabolism,
Electron transport].
Length = 316
Score = 30.4 bits (69), Expect = 1.1
Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 24/131 (18%)
Query: 102 AILTSLPVWA---VLITHLCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWI 158
AIL + +LI HL + W +W L+ F +S L Q
Sbjct: 53 AILAPFGIIIGLTILIFHLTKPWTFWKLM------------FFYNFTSVMSMGVMLFQVY 100
Query: 159 LILVFSWLADYIVAKQILSPTVSRKMWNTIGLWGSAAALVGLSFVGDNLVGAITCLTLAI 218
+ ++ WLA I+ K+ ++ ++R ++ L + + +I L +
Sbjct: 101 MAVLLLWLA--IIFKKEVAALLNRY-------LPILDFVLKLIAIAERFENSIEIFLLVL 151
Query: 219 AINAGTYTGFL 229
A+ G YTGFL
Sbjct: 152 AVLLGAYTGFL 162
>gnl|CDD|112629 pfam03825, Nuc_H_symport, Nucleoside H+ symporter.
Length = 400
Score = 30.1 bits (68), Expect = 1.6
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 241 GTLMGFTNGCANI-ASILGPLFVGFIVTDNTSVSQWQTIFLIAAAIFFFGNLIFLIF 296
G NG N+ SIL + VG TD + WQT++L+ A + ++F++F
Sbjct: 340 GLFNLMINGVGNVLGSILSGMLVGMFTTDGSV--DWQTLWLVFAGMALALAVLFMLF 394
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 29.2 bits (66), Expect = 3.0
Identities = 39/181 (21%), Positives = 63/181 (34%), Gaps = 30/181 (16%)
Query: 1 MSKWAPPMERARLFSFAFSGTQFGNLVTLPVAGLL-------AGSPWGWPSIFYVSGAVA 53
++++APP +R SF G G L+ LL A WGW I ++ AV
Sbjct: 121 LAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW-RIPFLVSAVL 179
Query: 54 IVWAAAWCYIGANSPAQHPFISLEERIYIETSLVHSSTVSSSMK--VPWKAILTS--LPV 109
++ I L R +E + V K P LT P
Sbjct: 180 VL------------------IGLYLRRNLEETPVFEKAQEKHKKKRGPIAETLTKHRKPF 221
Query: 110 WAVLITHLCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADY 169
L + ++ + T +P+Y+ L S + + +I I + L+D
Sbjct: 222 LLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR 281
Query: 170 I 170
I
Sbjct: 282 I 282
>gnl|CDD|224201 COG1282, PntB, NAD/NADP transhydrogenase beta subunit [Energy
production and conversion].
Length = 463
Score = 28.9 bits (65), Expect = 4.3
Identities = 31/131 (23%), Positives = 46/131 (35%), Gaps = 29/131 (22%)
Query: 189 GLWGSAAALVGLSFVGDNL------------VGAITCLTLAIAINAGTYTGFLSNHLDLS 236
+ G AA + ++ VG+ G L L AI A T++G + LS
Sbjct: 98 SMIGLAAVFIAMAAVGEPYAFGIAAKGAPIPTGNRLELFLGAAIGAITFSGSVIAFGKLS 157
Query: 237 PNFAGTLMGFT----------NGCANIASILGPLFVGFIVTDNTSVSQWQTIFLIAAAIF 286
+ L N +A+I L + FI T+N W + A F
Sbjct: 158 GRYKFRLFQGAPVRFAGQHLLNLVLGLATIG--LGIAFIATEN-----WPAFGAMLALAF 210
Query: 287 FFGNLIFLIFG 297
G LI + G
Sbjct: 211 LMGVLIIIPIG 221
>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter. This model
represents a subgroup of the more broadly defined model
TIGR00890, which in turn belongs to the Major
Facilitator transporter family. Seed members for this
family include the known oxalate/formate antiporter of
Oxalobacter formigenes, as well as transporter subunits
co-clustered with the two genes of a system that
decarboxylates oxalate into formate. In many of these
cassettes, two subunits are found rather than one,
suggesting the antiporter is sometimes homodimeric,
sometimes heterodimeric.
Length = 405
Score = 28.6 bits (64), Expect = 4.3
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 192 GSAAALVGLSFVGDNLVGAITCLTLAIAINAGTYTGFLSNHLD-LSPNFAGTLMGFTNGC 250
+ L G N V + L Y+ F + D +A T G
Sbjct: 291 IEGVGIYLLPTFGHNPVAFVILSALVFFAWGEIYSLFPATCADTFGSKYAATNAGLLYTA 350
Query: 251 ANIASILGPLFVGFIVTDNTSVSQWQTIFLIAAAIFF 287
A++L PL I++ +T W +FLIAAA+
Sbjct: 351 KGTAALLVPL--ASILSTSTG---WNAVFLIAAALNI 382
>gnl|CDD|107017 PHA01076, PHA01076, putative encapsidation protein.
Length = 378
Score = 28.4 bits (63), Expect = 4.9
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 123 YWTLLTEMPSYINSVLQ----FDIKSNGFLSAAPYLA 155
++TL +I ++ F K F SA YLA
Sbjct: 43 HYTLRDAYRDFIEEIIDENPLFKSKRVTFRSARDYLA 79
>gnl|CDD|183487 PRK12382, PRK12382, putative transporter; Provisional.
Length = 392
Score = 28.1 bits (63), Expect = 5.8
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 27 VTLPVAGLLAGSPWGWPSIFYVSGAVAIV 55
V+ P+AG+LA S +G+PS+F A++
Sbjct: 353 VSGPLAGMLATS-FGYPSVFLAGAISAVL 380
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 28.5 bits (64), Expect = 6.8
Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 23/155 (14%)
Query: 30 PVAGLLAGSPWGWPSIF--YVSGAVAI-VWAAAWCYIGANSPAQHPFISLEERIYIETSL 86
P GL + + +S + I + AN+ F +L + +
Sbjct: 769 PEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAFTVLV 828
Query: 87 VHS---STVSSSMKVPW--KAILTSLPVWAVLITHLCQNWGYWTLLTEMPSYINSVLQFD 141
+ + S P+ + ++ +W L+ + +L + ++ L
Sbjct: 829 LIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVII--------ILQLLIIFL-PPLNLK 879
Query: 142 IKSNGFLSAAPY-LAQWILILVFSWLADYIVAKQI 175
I P L +W++ + + L YIV ++
Sbjct: 880 I-----FQPTPLSLFEWLIAIAVALLLLYIVVSEL 909
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.136 0.443
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,542,079
Number of extensions: 1617998
Number of successful extensions: 3029
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2946
Number of HSP's successfully gapped: 189
Length of query: 318
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 221
Effective length of database: 6,635,264
Effective search space: 1466393344
Effective search space used: 1466393344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (26.4 bits)