RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4758
         (318 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 57.8 bits (138), Expect = 5e-10
 Identities = 44/298 (14%), Positives = 94/298 (31%), Gaps = 10/298 (3%)

Query: 1   MSKWAPPMERARLFSFAFSGTQFGNLVTLPVAGLLAGSPWGWPSIFYVSGAVAIVWAAAW 60
           M  W    ER  + S        G  +   +  L       W +  Y+    AI+ A   
Sbjct: 141 MVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA 200

Query: 61  CYIGANSPAQHPFISLEER--IYIETSLVHSSTVSSSMKVPWKAILTSLPVWAVLITHLC 118
             +  ++P       +EE    Y +     +    ++ ++  + +L +  +W + I ++ 
Sbjct: 201 FAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVF 260

Query: 119 QNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVFSWLADYIVAKQILSP 178
                + +L   P+Y+  V  F +  + +       A     L+  W++D +        
Sbjct: 261 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-- 318

Query: 179 TVSRKMWNTIGLWGSAAALVGLSFVGDNLVGAITCLTLAIAINAGTYTGFLSNHLDLSPN 238
                    + L   A  +  ++  G+  V  I  + +   I        L         
Sbjct: 319 ---ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK 375

Query: 239 FAGTLMGFTNGCANIASILGPLFVGFIVTDNTSVSQWQTIFLIAAAIFFFGNLIFLIF 296
            AGT  GFT     +   +    +     D      W   F++         ++ ++ 
Sbjct: 376 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG---WDGGFMVMIGGSILAVILLIVV 430


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 29.0 bits (63), Expect = 0.74
 Identities = 26/215 (12%), Positives = 58/215 (26%), Gaps = 8/215 (3%)

Query: 104 LTSLPVWAVLITHLCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWILILVF 163
           L +   W   +      +         P +++ +        G + AA  L   +   +F
Sbjct: 4   LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLF 63

Query: 164 SWLADYIVAKQILSPTVSRKMWNTIGLWGSAAALVGLSFVGDNLVGAITCLTLAIAINAG 223
             L+D +  +        + +   I       A   +   G  L   I   ++   I  G
Sbjct: 64  GLLSDKLGLR--------KYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLG 115

Query: 224 TYTGFLSNHLDLSPNFAGTLMGFTNGCANIASILGPLFVGFIVTDNTSVSQWQTIFLIAA 283
                 +  ++           F  G A +   +G      IV    +++     +L + 
Sbjct: 116 FCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSG 175

Query: 284 AIFFFGNLIFLIFGTSEVQPWNDSEYDGDKKKSRK 318
                  L+F     +       +    +      
Sbjct: 176 CALILAVLLFFAKTDAPSSATVANAVGANHSAFSL 210



 Score = 27.8 bits (60), Expect = 2.0
 Identities = 22/258 (8%), Positives = 62/258 (24%), Gaps = 5/258 (1%)

Query: 40  WGWPSIFYVSGAVAIVWAAAWCYIGANSPAQHPFISLEERIYIETSLVHSSTVSSSMKVP 99
           +G       +  V I++     ++          +++        +   ++  ++     
Sbjct: 146 FGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANH 205

Query: 100 WKAILTSLPVWAVLITHLCQNWGYWTLLTEMPSYINSVLQFDIKSNGFLSAAPYLAQWIL 159
               L               +     +      +      F             +  ++ 
Sbjct: 206 SAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVT 265

Query: 160 ILVFSWLADYIVAKQILSPTVSRKMWNTIGLWGSAAALVGLSFVGDNLVGAITCLTLAIA 219
            +     A  +    ++   +  K    +     +  ++G SF    L   I        
Sbjct: 266 TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFE 325

Query: 220 INAGTYTGFLSNHLDLSPNFAGTLMGFTNGCAN-IASILGPLFVGFIVTDNTSVSQWQTI 278
           +       F          F+ T+          +A I   +  G +         +Q  
Sbjct: 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY----ESIGFQGA 381

Query: 279 FLIAAAIFFFGNLIFLIF 296
           +L+   +     LI +  
Sbjct: 382 YLVLGLVALGFTLISVFT 399


>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus
           haemolyticus [TaxId: 726]}
          Length = 327

 Score = 25.7 bits (55), Expect = 7.7
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 10/40 (25%)

Query: 7   PMERARLFSF----AFSGT------QFGNLVTLPVAGLLA 36
           P E AR+  +        +      QFGN V + V   +A
Sbjct: 276 PRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIA 315


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.443 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,207,808
Number of extensions: 53359
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 16
Length of query: 318
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,240,546
Effective search space: 289047218
Effective search space used: 289047218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.4 bits)