BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4761
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTH 118
Q+SGGQQ+R+++A + ++P +++ DEPT LD + I Q L+ L+ G T ++ TH
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH 204
Query: 119 YIEEARHAHKV 129
I AR ++
Sbjct: 205 DINVARFGERI 215
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+S+A + P +L+ DEPT+ LDP + + + ++ L+ G T ++ TH +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 121 EEARH 125
ARH
Sbjct: 214 GFARH 218
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTH 118
Q+SGGQQ+R+++A + ++P +++ D+PT LD + I Q L+ L+ G T ++ TH
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 119 YIEEARHAHKV 129
I AR ++
Sbjct: 205 DINVARFGERI 215
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117
G++SGGQ + + + +M +P ++++DEP AG+ P ++ I+ H+ L A G+T +I
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIE 210
Query: 118 HYIE 121
H ++
Sbjct: 211 HRLD 214
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117
G++SGGQ + + + +M +P ++++DEP AG+ P ++ I+ H+ L A G+T +I
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIE 210
Query: 118 HYIE 121
H ++
Sbjct: 211 HRLD 214
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%)
Query: 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117
G++SGGQ + + + +M +P ++++D+P AG+ P ++ I+ H+ L A G+T +I
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIE 210
Query: 118 HYIE 121
H ++
Sbjct: 211 HRLD 214
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTH 118
Q+SGGQQ+R+++A + ++P +++ D+PT LD + I Q L+ L+ G T ++ TH
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 119 YIEEARHAHKV 129
I AR ++
Sbjct: 205 DINVARFGERI 215
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 51 LPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPL-ISDTIWQHLRTLSAT 109
L D + C +S GQ++R+++A ++ P +LILDEPTAGLDP+ +S+ + +
Sbjct: 136 LKDKPTHC--LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL 193
Query: 110 GVTCIITTHYIE 121
G+T II TH I+
Sbjct: 194 GITIIIATHDID 205
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 50 GLPD-----PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLR 104
GL D P+SL SGGQ +R+++A + P +++ DEPT+ LDP + + ++
Sbjct: 127 GLKDKAHAYPDSL----SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 182
Query: 105 TLSATGVTCIITTHYIEEARH 125
L+ G+T ++ TH + AR
Sbjct: 183 QLANEGMTMVVVTHEMGFARE 203
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 50 GLPD-----PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLR 104
GL D P+SL SGGQ +R+++A + P +++ DEPT+ LDP + + ++
Sbjct: 148 GLKDKAHAYPDSL----SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 203
Query: 105 TLSATGVTCIITTHYIEEARH 125
L+ G+T ++ TH + AR
Sbjct: 204 QLANEGMTMVVVTHEMGFARE 224
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
Q+SGGQQ+R+++A ++ P +L+LDEP + LD L+ + L+ L G+T + TH
Sbjct: 133 QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTH 192
Query: 119 YIEEA 123
EA
Sbjct: 193 DQAEA 197
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 29 FHPTTVPIPSVYFPW-YISLLNGLPDPNSLCGQV----SGGQQRRISVAVTMMHSPLLLI 83
F+P P+P V ++ L D +S +V SGG++RR+++A ++H P +LI
Sbjct: 109 FYPDRDPVPLVKKAMEFVGL-----DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILI 163
Query: 84 LDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
LDEP GLD + + + G T I+ +H IE
Sbjct: 164 LDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE 201
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 29 FHPTTVPIPSVYFPWYISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPT 88
F+P P+P V L+ + + +SGG++RR+++A ++H P +LILDEP
Sbjct: 107 FYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 89 AGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
GLD + + + G T I+ +H IE
Sbjct: 167 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIE 199
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 55 NSLCG----QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG 110
N+L G Q+SGGQ++RI++A ++ +P +L+LDE T+ LD S+ I Q +A G
Sbjct: 545 NTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE-SEGIVQQALDKAAKG 603
Query: 111 VTCIITTHYIEEARHA 126
T II H + R+A
Sbjct: 604 RTTIIIAHRLSTIRNA 619
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
Q+SGGQ++RI++A ++ +P +L+LDE T+ LD S+ + Q + G TCI+ H
Sbjct: 1217 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTE-SEKVVQEALDRAREGRTCIVIAHR 1275
Query: 120 IEEARHAHKVPI 131
+ +A + +
Sbjct: 1276 LNTVMNADCIAV 1287
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++SGG+Q+R+++A + + P+LL DEPT LD + + ++ G + ++ TH
Sbjct: 140 ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199
Query: 120 IEEARHAHK 128
E A H+
Sbjct: 200 RELAELTHR 208
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++SGGQ++R+S+A +++P +LILDE T+ LD L S++I Q + + T +I H
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALD-LESESIIQEALDVLSKDRTTLIVAHR 535
Query: 120 IEEARHAHKVPI 131
+ HA K+ +
Sbjct: 536 LSTITHADKIVV 547
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 47 LLNGLPDP-NSLCG----QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQ 101
++ LPD N+ G Q+SGGQ++RI++A ++ P +L+LDE T+ LD S+ + Q
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE-SEKVVQ 1211
Query: 102 HLRTLSATGVTCIITTHYIEEARHA 126
+ G TCI+ H + ++A
Sbjct: 1212 EALDKAREGRTCIVIAHRLSTIQNA 1236
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
Q+SGGQ++RI++A ++ +P +L+LDE T+ LD S+ + Q + G T I+ H
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE-SEAVVQAALDKAREGRTTIVIAH 583
Query: 119 YIEEARHA 126
+ R+A
Sbjct: 584 RLSTVRNA 591
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 47 LLNGLPDP-NSLCG----QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQ 101
++ LPD N+ G Q+SGGQ++RI++A ++ P +L+LDE T+ LD S+ + Q
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE-SEKVVQ 1211
Query: 102 HLRTLSATGVTCIITTHYIEEARHA 126
+ G TCI+ H + ++A
Sbjct: 1212 EALDKAREGRTCIVIAHRLSTIQNA 1236
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
Q+SGGQ++RI++A ++ +P +L+LDE T+ LD S+ + Q + G T I+ H
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE-SEAVVQAALDKAREGRTTIVIAH 583
Query: 119 YIEEARHA 126
+ R+A
Sbjct: 584 RLSTVRNA 591
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
++SGGQQ+R+++A ++ P LL+LDEP + LD + D+ ++ + S GVT ++ +H
Sbjct: 140 ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 48 LNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS 107
L+GL + L +SGGQ++R+++A + L LDEP + LDP I+Q L +L
Sbjct: 130 LSGLAAADPL--NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLK 187
Query: 108 ATGVTCIITTHYIE 121
G I+ TH +E
Sbjct: 188 NEGKGIILVTHELE 201
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTC 113
N ++SGGQQ+R+++A + P +L+ DEP A +D I + +R + GVT
Sbjct: 140 NRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTS 199
Query: 114 IITTHYIEEA 123
+ TH EEA
Sbjct: 200 VFVTHDQEEA 209
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
S G R++ +A +M +P L ILDEPT+GLD L + + + L+ S G+T ++++H
Sbjct: 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 55 NSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG 110
N++ G+ +SGGQ++RI++A ++++P +LI DE T+ LD I +++ + G
Sbjct: 130 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKG 188
Query: 111 VTCIITTHYIEEARHAHKVPI 131
T II H + ++A ++ +
Sbjct: 189 RTVIIIAHRLSTVKNADRIIV 209
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 55 NSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG 110
N++ G+ +SGGQ++RI++A ++++P +LI DE T+ LD I +++ + G
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKG 194
Query: 111 VTCIITTHYIEEARHAHKVPI 131
T II H + ++A ++ +
Sbjct: 195 RTVIIIAHRLSTVKNADRIIV 215
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 46 SLLNGLPDP-NSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIW 100
S + +PD N+ G+ +SGGQ++R+++A + +P +L+LDE TA LD +
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 101 QHLRTLSATGVTCIITTHYIEEARHAHKV 129
+ L +L G T ++ H + A K+
Sbjct: 180 KALDSL-MKGRTTLVIAHRLSTIVDADKI 207
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 55 NSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG 110
N++ G+ +SGGQ++RI++A ++++P +LI DE T+ LD I +++ + G
Sbjct: 132 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKG 190
Query: 111 VTCIITTHYIEEARHAHKVPI 131
T II H + ++A ++ +
Sbjct: 191 RTVIIIAHRLSTVKNADRIIV 211
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 55 NSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG 110
N++ G+ +SGGQ++RI++A ++++P +LI DE T+ LD I +++ + G
Sbjct: 132 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKG 190
Query: 111 VTCIITTHYIEEARHAHKVPI 131
T II H + ++A ++ +
Sbjct: 191 RTVIIIAHRLSTVKNADRIIV 211
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 48 LNGLPDP-NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106
L GL D +S +SGGQ++R+++A + +P +L+ DE T+ LDP + +I + L+ +
Sbjct: 127 LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI 186
Query: 107 SAT-GVTCIITTHYIE 121
+ G+T ++ TH ++
Sbjct: 187 NRRLGLTILLITHEMD 202
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
++SG QQ+R+++A ++ P LL+LDEP + LD + D+ ++ + S GVT ++ +H
Sbjct: 140 ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 51 LPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SAT 109
L D N L +SGG+Q+R+++A ++ +P +L+LDEP + LDP + + L L
Sbjct: 120 LLDRNPLT--LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN 177
Query: 110 GVTCIITTHYIEEAR 124
+T + TH EAR
Sbjct: 178 KLTVLHITHDQTEAR 192
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 55 NSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG 110
N++ G+ +SGGQ++RI++A ++++P +LI D+ T+ LD I +++ + G
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKI-CKG 194
Query: 111 VTCIITTHYIEEARHAHKVPI 131
T II H + ++A ++ +
Sbjct: 195 RTVIIIAHRLSTVKNADRIIV 215
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGGQ++R+S+A ++ P +LILD+ T+ +DP+ I L+ + G T I T I
Sbjct: 481 SGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP 539
Query: 122 EARHAHKV 129
A A K+
Sbjct: 540 TALLADKI 547
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 48 LNGLPDP-NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106
L GL D +S +SGGQ++R+++A + +P +L+ D+ T+ LDP + +I + L+ +
Sbjct: 150 LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI 209
Query: 107 SAT-GVTCIITTHYIE 121
+ G+T ++ TH ++
Sbjct: 210 NRRLGLTILLITHEMD 225
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
Q+SGGQQ+R+++A ++ P +L+ DEP + LD + + ++ L G+T + TH
Sbjct: 133 QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTH 192
Query: 119 YIEEA 123
EA
Sbjct: 193 DQAEA 197
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQ-HLRTLSATGVTC 113
NS Q+SGG ++R+ +A+ ++ P++LILDEPT+ LD L I Q +T
Sbjct: 149 NSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITL 208
Query: 114 IITTHYIE-EARHAHKVPI 131
I TH I A A KV +
Sbjct: 209 IFVTHDIAVAAELADKVAV 227
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 48 LNGLPDP-NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106
L GL D +S +SGGQ++R+++A + +P +L+ D+ T+ LDP + +I + L+ +
Sbjct: 150 LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI 209
Query: 107 SAT-GVTCIITTH 118
+ G+T ++ TH
Sbjct: 210 NRRLGLTILLITH 222
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 41 FPWYISLLNGLPDP-NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTI 99
W SL L + L G +SGG+Q+ +++ + P LL DEP+ GL P++ +
Sbjct: 119 LEWIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEV 178
Query: 100 WQHLRTLSATGVTCIITTH 118
++ ++ ++ G T ++
Sbjct: 179 FEVIQKINQEGTTILLVEQ 197
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 55 NSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG 110
N++ G+ +SGGQ++RI++A ++ +P +L+LDE T+ LD + + L L G
Sbjct: 505 NTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDG 563
Query: 111 VTCIITTHYIEEARHAHKVPI 131
T ++ H++ ++A+ V +
Sbjct: 564 RTVLVIAHHLSTIKNANMVAV 584
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 55 NSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG 110
N++ G+ +SGGQ++RI++A ++++P +LI DE T+ LD I +++ + G
Sbjct: 130 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKG 188
Query: 111 VTCIITTHYIEEARHAHKVPI 131
T II + ++A ++ +
Sbjct: 189 RTVIIIAARLSTVKNADRIIV 209
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 55 NSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG 110
N++ G+ +SGGQ++RI++A ++++P +LI DE T+ LD I +++ + G
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKG 194
Query: 111 VTCIITTHYIEEARHAHKVPI 131
T II + ++A ++ +
Sbjct: 195 RTVIIIAARLSTVKNADRIIV 215
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 43 WYISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH 102
W LL N Q+SGGQ++R++VA ++ P +L++DEP + LD + +
Sbjct: 125 WAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE 184
Query: 103 LRTLSAT-GVTCIITTHYIEEA 123
++ L VT I TH EA
Sbjct: 185 IKKLQQKLKVTTIYVTHDQVEA 206
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 43 WYISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH 102
W LL N Q+SGGQ++R++VA ++ P +L++DEP + LD + +
Sbjct: 124 WAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE 183
Query: 103 LRTLSAT-GVTCIITTHYIEEA 123
++ L VT I TH EA
Sbjct: 184 IKKLQQKLKVTTIYVTHDQVEA 205
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 55 NSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG 110
N++ G+ +SGGQ++RI++A ++ +P +L+LDE T+ LD + + L L G
Sbjct: 474 NTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDG 532
Query: 111 VTCIITTHYIEEARHAHKVPI 131
T ++ H + ++A+ V +
Sbjct: 533 RTVLVIAHRLSTIKNANMVAV 553
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
++SGGQ++R+++ ++ P + ++DEP + LD + + L+ L GVT I TH
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 119 YIEEA 123
EA
Sbjct: 199 DQVEA 203
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++SGG+++R+++A T++ +P +++LDE T+ LD I L + A T I+ H
Sbjct: 190 KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCAN-RTTIVVAHR 248
Query: 120 IEEARHAHKV 129
+ +A ++
Sbjct: 249 LSTVVNADQI 258
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 61 VSGGQQRRISVAVTMMHSPL---LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117
+SGG+ +RI +A T + S L + +LDEPT GL P ++ + + L+ L G T I+
Sbjct: 465 LSGGESQRIRLA-TQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523
Query: 118 HYIEEARHAHKV 129
H E R+A +
Sbjct: 524 HDEEVIRNADHI 535
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 61 VSGGQQRRISVAVTMMHSPL---LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117
+SGG+ +RI +A + L ILDEPT GL + + L L G T I+
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 118 HYIEEARHAHKV 129
H ++ ++A +
Sbjct: 866 HNLDVIKNADHI 877
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
++SGGQ++R+++ ++ P + + DEP + LD + L+ L GVT I TH
Sbjct: 142 ELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTH 201
Query: 119 YIEEA 123
EA
Sbjct: 202 DQVEA 206
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT--GVTCII 115
G +S G+++R+ +A + P +LILDEP AGLD + +++ L +LS + + I
Sbjct: 159 IGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIY 218
Query: 116 TTHYIEE 122
TH+IEE
Sbjct: 219 VTHFIEE 225
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI--IT 116
++SGG+++R+++A ++ P LL+LDEP + +D + + LR + I +T
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 117 THYIEEARHAHKVPI 131
IE A A +V +
Sbjct: 185 HDLIEAAMLADEVAV 199
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 58 CGQVSGGQQRRISVAVTMMH-------SPLLLILDEPTAGLDPLISDTIWQHLRTLSATG 110
Q+SGG+ +R+ +A ++ + LL+LDEP LD + + L LS G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQG 183
Query: 111 VTCIITTHYIEEA-RHAHKV 129
+ + ++H + RHAH+
Sbjct: 184 LAIVXSSHDLNHTLRHAHRA 203
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
+SGGQ++ I +A + L++LDEPT+ LD D + L L+ + +T + TTH
Sbjct: 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 54 PNSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT 109
N++ G+ +SGGQ+ RIS+A + L +LD P LD + +++
Sbjct: 150 DNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 209
Query: 110 GVTCIITTHYIEEARHAHKVPI 131
T I+ T +E R A K+ I
Sbjct: 210 NKTRILVTSKMEHLRKADKILI 231
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 54 PNSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT 109
N++ G+ +SGGQ+ RIS+A + L +LD P LD + +++
Sbjct: 150 DNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 209
Query: 110 GVTCIITTHYIEEARHAHKVPI 131
T I+ T +E R A K+ I
Sbjct: 210 NKTRILVTSKMEHLRKADKILI 231
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 54 PNSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT 109
N++ G+ +SGGQ+ RIS+A + L +LD P LD + +++
Sbjct: 150 DNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 209
Query: 110 GVTCIITTHYIEEARHAHKVPI 131
T I+ T +E R A K+ I
Sbjct: 210 NKTRILVTSKMEHLRKADKILI 231
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQ+ RIS+A + L +LD P LD L I++ T I+ T +
Sbjct: 143 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 202
Query: 121 EEARHAHKVPI 131
E + A K+ I
Sbjct: 203 EHLKKADKILI 213
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQ+ RIS+A + L +LD P LD L I++ T I+ T +
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 121 EEARHAHKVPI 131
E + A K+ I
Sbjct: 220 EHLKKADKILI 230
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 54 PNSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT 109
N++ G+ +SGGQ+ RIS+A + L +LD P LD + +++
Sbjct: 150 DNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 209
Query: 110 GVTCIITTHYIEEARHAHKVPI 131
T I+ T +E R A K+ I
Sbjct: 210 NKTRILVTSKMEHLRKADKILI 231
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 54 PNSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT 109
N++ G+ +SGGQ+ RIS+A + L +LD P LD + +++
Sbjct: 149 DNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 208
Query: 110 GVTCIITTHYIEEARHAHKVPI 131
T I+ T +E R A K+ I
Sbjct: 209 NKTRILVTSKMEHLRKADKILI 230
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQ+ RIS+A + L +LD P LD L I++ T I+ T +
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 220
Query: 121 EEARHAHKVPI 131
E + A K+ I
Sbjct: 221 EHLKKADKILI 231
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 60 QVSGGQQRRISVAVTMMHSP---LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIIT 116
++SGG+ +RI +A + S + +LDEPT GL P + + + L L G T I
Sbjct: 730 ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAV 789
Query: 117 THYIE 121
H ++
Sbjct: 790 EHKMQ 794
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 61 VSGGQQRRISVAVTMMHSPL---LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117
+S G+ +R+ +A T ++S L + +LDEP+AGL P ++ + L L G + +
Sbjct: 380 LSPGELQRLRLA-TQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVE 438
Query: 118 HYIEEARHA 126
H ++ R A
Sbjct: 439 HDLDVIRRA 447
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQ+ RIS+A + L +LD P LD L I++ T I+ T +
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 121 EEARHAHKVPI 131
E + A K+ I
Sbjct: 220 EHLKKADKILI 230
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQ+ RIS+A + L +LD P LD L I++ T I+ T +
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 190
Query: 121 EEARHAHKVPI 131
E + A K+ I
Sbjct: 191 EHLKKADKILI 201
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQ+ RIS+A + L +LD P LD L I++ T I+ T +
Sbjct: 130 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 189
Query: 121 EEARHAHKVPI 131
E + A K+ I
Sbjct: 190 EHLKKADKILI 200
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHL-RTLSATGVTCIITTH 118
Q+SGGQ++ +++A ++ P LLILD+ T+ LD + + L + T ++ TH
Sbjct: 156 QLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITH 215
Query: 119 YIEEARHAHKV 129
+ A AH +
Sbjct: 216 QLSLAERAHHI 226
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 46 SLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
S ++GLP + + Q+SGGQ++ +++A ++ P +LILD+ T+ LD
Sbjct: 135 SFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALD 186
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTHY 119
+SGGQ++R+++ T++ P + +LDEP + LD + + + L G T I TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 120 IEEA 123
EA
Sbjct: 194 QVEA 197
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTHY 119
+SGGQ++R+++ T++ P + +LDEP + LD + + + L G T I TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 120 IEEA 123
EA
Sbjct: 194 QVEA 197
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDP 93
++SGG+++RI++A ++ P ++I DE T+ LD
Sbjct: 155 KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDS 188
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQ++RI++A ++ +LILDE T+ LD I L L T ++ H +
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR-TSLVIAHRL 539
Query: 121 EEARHAHKVPI 131
A ++ +
Sbjct: 540 STIEQADEIVV 550
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 59 GQVSGGQQRRISVAVTMMHSPL---LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCII 115
G +SGG+ +RI +A T + S L L +LDEP+ GL +D + L+++ G T I+
Sbjct: 201 GTLSGGEAQRIRLA-TQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 259
Query: 116 TTH 118
H
Sbjct: 260 VEH 262
Score = 28.9 bits (63), Expect = 0.74, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 61 VSGGQQRRISVAVTM---MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117
+SGG+ +R+ +A + + L ILDEPT GL + L L G T ++
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 118 HYIEEARHA 126
H ++ + A
Sbjct: 604 HNLDVIKTA 612
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 59 GQVSGGQQRRISVAVTMMHSPL---LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCII 115
G +SGG+ +RI +A T + S L L +LDEP+ GL +D + L+++ G T I+
Sbjct: 503 GTLSGGEAQRIRLA-TQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 561
Query: 116 TTH 118
H
Sbjct: 562 VEH 564
Score = 28.9 bits (63), Expect = 0.74, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 61 VSGGQQRRISVAVTM---MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117
+SGG+ +R+ +A + + L ILDEPT GL + L L G T ++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 118 HYIEEARHA 126
H ++ + A
Sbjct: 906 HNLDVIKTA 914
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCII 115
+SGGQ++RI++A ++ +LILDE T+ LD I L L + +I
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI 535
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQ++R+++A ++ +LILDE T+ LD I L L T ++ H +
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNK-TVLVIAHRL 539
Query: 121 EEARHAHKV 129
A ++
Sbjct: 540 STIEQADEI 548
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 60 QVSGGQQRRISVAVTMMH-------SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
Q+SGG+ +R+ +A ++ + LL+LDEP LD + + L L G+
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLA 185
Query: 113 CIITTHYIEEA-RHAHKV 129
+ ++H + RHAH+
Sbjct: 186 IVXSSHDLNHTLRHAHRA 203
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
Q+SGGQ++ +++A ++ P LLILD T+ LD
Sbjct: 156 QLSGGQRQAVALARALIRKPRLLILDNATSALD 188
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTHY 119
+SGGQ++R+++ T++ P + +LD+P + LD + + + L G T I TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 120 IEEA 123
EA
Sbjct: 194 QVEA 197
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
SGG+++R + + P L ILDE +GLD + + +L + II THY
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 204
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
SGG+++R + + P L ILDE +GLD + + +L + II THY
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 223
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 59 GQVSGGQQRRISVAVTMMHSPL---LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCII 115
G +SGG+ +RI +A T + S L L +LDEP+ GL +D + L++ G T I+
Sbjct: 503 GTLSGGEAQRIRLA-TQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIV 561
Query: 116 TTH 118
H
Sbjct: 562 VEH 564
Score = 28.9 bits (63), Expect = 0.74, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 61 VSGGQQRRISVAVTM---MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117
+SGG+ +R+ +A + + L ILDEPT GL + L L G T ++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 118 HYIEEARHA 126
H ++ + A
Sbjct: 906 HNLDVIKTA 914
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
++SGG+ +R+++A T++ + +LDEP+A LD
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLD 433
Score = 34.7 bits (78), Expect = 0.017, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
+SGG+ +R+++A ++ + DEP++ LD + +R LS G + ++ H
Sbjct: 158 HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+S GQQ +IS+A + L +LD P LD L I++ T I+ T +
Sbjct: 161 LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 220
Query: 121 EEARHAHKVPI 131
E + A K+ I
Sbjct: 221 EHLKKADKILI 231
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+S GQQ +IS+A + L +LD P LD L I++ T I+ T +
Sbjct: 160 LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 121 EEARHAHKVPI 131
E + A K+ I
Sbjct: 220 EHLKKADKILI 230
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 34.7 bits (78), Expect = 0.016, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
+SGG+ +R+++A T++ + +LDEP+A LD
Sbjct: 458 LSGGELQRVAIAATLLRDADIYLLDEPSAYLD 489
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
Q+SGG+ +R+++A ++ DEP++ LD + + +R L+ G ++ H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 272
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 34.7 bits (78), Expect = 0.016, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
+SGG+ +R+++A T++ + +LDEP+A LD
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLD 503
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
Q+SGG+ +R+++A ++ DEP++ LD + + +R L+ G ++ H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 286
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 33.9 bits (76), Expect = 0.028, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
+SGG + ++++A ++ + +L+LDEPT LD + + W + L+ G+T I +H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTV--NVAWL-VNYLNTCGITSITISH 597
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQ+ ++ +A P L++LDEPT LD D++ + L II TH
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD---RDSLGALSKALKEFEGGVIIITHSA 952
Query: 121 E 121
E
Sbjct: 953 E 953
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 33.9 bits (76), Expect = 0.029, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
+SGG + ++++A ++ + +L+LDEPT LD + + W + L+ G+T I +H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTV--NVAWL-VNYLNTCGITSITISH 603
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQ+ ++ +A P L++LDEPT LD D++ + L II TH
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD---RDSLGALSKALKEFEGGVIIITHSA 958
Query: 121 E 121
E
Sbjct: 959 E 959
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQ+ ++ +A P L++LDEPT LD D++ + L II TH
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD---RDSLGALSKALKEFEGGVIIITHSA 958
Query: 121 E 121
E
Sbjct: 959 E 959
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
+SGG + ++++A ++ + +L+LDEPT LD + + W + L+ G+T I +H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTV--NVAWL-VNYLNTCGITSITISH 603
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHL-RTLSATGVTCIITTH 118
++SGGQQ+R ++A + P L++LDEP + LD + I + + L A G + + +H
Sbjct: 138 ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSH 197
Query: 119 YIEEA-RHAHKVPI 131
EEA ++A ++ +
Sbjct: 198 DREEALQYADRIAV 211
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 33.1 bits (74), Expect = 0.048, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+S GQ++ +++ + +P +LILDE T+ +D +I + L G T II H +
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL-MEGKTSIIIAHRL 550
Query: 121 EEARHA 126
++A
Sbjct: 551 NTIKNA 556
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 32.7 bits (73), Expect = 0.055, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 61 VSGGQQRRISVAVTMMHSPL---LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117
+SGG+ +RI +A T + S L L +LDEP+ GL + + + L L G T I+
Sbjct: 522 LSGGEAQRIRLA-TQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVE 580
Query: 118 HYIEEARHA 126
H + HA
Sbjct: 581 HDEDTIEHA 589
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 16/84 (19%)
Query: 44 YISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPL---LLILDEPTAGLDPLISDTIW 100
Y+ L G P P +SGG+ +R+ +A + + ILDEPT GL D I
Sbjct: 854 YVRL--GQPAPT-----LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLH---FDDIR 903
Query: 101 QHLRTLSA---TGVTCIITTHYIE 121
+ L ++ G T I+ H ++
Sbjct: 904 KLLNVINGLVDKGNTVIVIEHNLD 927
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
SGG+++R + ++ P +LDE +GLD + + + + ++ THY
Sbjct: 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY 202
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
Q++ GQ++ +++A ++ P LLILD T+ LD
Sbjct: 156 QLAVGQRQAVALARALIRKPRLLILDNATSALD 188
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH-LRTLSATGV 111
D G++S G RR+ +A T++ + + +LD+P +D + + L L G+
Sbjct: 126 DLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185
Query: 112 TCI 114
I
Sbjct: 186 VII 188
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 61 VSGGQQRRISVAVTMMH------SPLLLILDEPTAGLDPLISDTIWQHLRTLSAT---GV 111
+SGG+Q+R+ +A + +P L LDEPT+ LD + LR L+ V
Sbjct: 142 LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV 201
Query: 112 TCII 115
C++
Sbjct: 202 CCVL 205
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 28/44 (63%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHL 103
+SGGQ++R+S+A + + + + D+P + +D + I++++
Sbjct: 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+S G ++ + +A +++ +L+LDEP+A LDP+ I + L+ A T I+ I
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFAD-CTVILCEARI 214
Query: 121 E 121
E
Sbjct: 215 E 215
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 29.3 bits (64), Expect = 0.70, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
+SGG+ +++ +A T+ L +LD+P++ LD
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417
Score = 27.3 bits (59), Expect = 2.7, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
+SGG +R+ VA +++ + I D+P++ LD
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170
>pdb|3HHE|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Bartonella Henselae
pdb|3HHE|B Chain B, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Bartonella Henselae
Length = 255
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 93 PLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131
PL+ + + LR VTC+ T+ Y E+ H VPI
Sbjct: 58 PLLGERVANGLR------VTCVATSQYSEQLCHKFGVPI 90
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
++SGG+ +R ++ ++ + + + DEP++ LD Q +R+L A I H
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
+SGG+ +R+++ + + + ++DEP+A LD
Sbjct: 467 HLSGGELQRVAIVLALGIPADIYLIDEPSAYLD 499
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 23 SHLRELFHPTTVPIPSVY----FPWYISLLNGLPDPNSLCG--QVSGGQQRRISVAVTMM 76
+L E F +P V F + NG+ ++L G Q++ R+++A ++
Sbjct: 243 KYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALI 302
Query: 77 HSPL-LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
+ + +ILDEPT LD + + R + + IIT H
Sbjct: 303 GNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHH 345
>pdb|3EO5|A Chain A, Crystal Structure Of The Resuscitation Promoting Factor
Rpfb
Length = 171
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 50 GLPDPNSLCGQVSGGQQRRISVA---VTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106
G D +V+G + R+ VA VT H ++ + +P + P+I +IW +
Sbjct: 41 GTQDVTFAVAEVNGVETGRLPVANVVVTPAHEAVVRVGTKPGTEVPPVIDGSIWDAIAGC 100
Query: 107 SATGVTCIITTH 118
A G I T +
Sbjct: 101 EAGGNWAINTGN 112
>pdb|1TPX|C Chain C, Ovine Recombinant Prp(114-234), Arq Variant In Complex
With The Fab Of The Vrq14 Antibody
pdb|1TQB|C Chain C, Ovine Recombinant Prp(114-234), Vrq Variant In Complex
With The Fab Of The Vrq14 Antibody
pdb|1TQC|C Chain C, Ovine Recombinant Prp(114-234), Arr Variant In Complex
With The Vrq14 Fab Fragment (Igg2a)
Length = 219
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 8 KFQVVSVGLYFRWKGSHLRELF 29
+ + +G+YF W+GSH + F
Sbjct: 82 RVEAEDLGIYFCWQGSHFPQTF 103
>pdb|3RY3|A Chain A, Putative Solute-Binding Protein From Yersinia Pestis.
pdb|3RY3|B Chain B, Putative Solute-Binding Protein From Yersinia Pestis
Length = 528
Score = 25.8 bits (55), Expect = 7.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 77 HSPLLLILDEPTAGLDPLISDTIWQH 102
H+ L I DEPT G DP + W H
Sbjct: 32 HTLQLAIGDEPTEGFDPXLG---WSH 54
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++S GQ + ++ + P ++ LDEP +D I ++++ G I+ TH
Sbjct: 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG---ILVTHE 184
Query: 120 IE 121
++
Sbjct: 185 LD 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,312,102
Number of Sequences: 62578
Number of extensions: 165331
Number of successful extensions: 631
Number of sequences better than 100.0: 141
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 161
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)