Query psy4761
Match_columns 131
No_of_seqs 232 out of 1642
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 17:01:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 3.5E-33 7.6E-38 213.1 7.4 88 44-131 119-208 (240)
2 COG1122 CbiO ABC-type cobalt t 100.0 9.8E-31 2.1E-35 202.5 6.9 123 1-131 83-211 (235)
3 COG1116 TauB ABC-type nitrate/ 100.0 3E-30 6.5E-35 200.0 8.8 88 44-131 113-203 (248)
4 COG1135 AbcC ABC-type metal io 100.0 1.7E-30 3.6E-35 206.7 7.2 88 44-131 124-214 (339)
5 COG1124 DppF ABC-type dipeptid 100.0 2.6E-30 5.5E-35 199.8 7.3 90 42-131 121-214 (252)
6 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.9E-30 8.5E-35 200.6 8.4 88 43-130 121-210 (254)
7 COG1136 SalX ABC-type antimicr 100.0 8.5E-30 1.8E-34 195.9 8.4 87 44-130 124-213 (226)
8 COG1131 CcmA ABC-type multidru 100.0 1.2E-28 2.6E-33 195.7 8.0 89 43-131 118-209 (293)
9 COG1127 Ttg2A ABC-type transpo 100.0 1.5E-28 3.3E-33 189.9 6.8 88 44-131 127-218 (263)
10 COG1117 PstB ABC-type phosphat 99.9 7.4E-29 1.6E-33 189.4 4.8 77 54-131 143-220 (253)
11 COG1120 FepC ABC-type cobalami 99.9 1.3E-27 2.9E-32 186.9 9.8 88 44-131 121-211 (258)
12 COG1125 OpuBA ABC-type proline 99.9 5.4E-28 1.2E-32 188.7 7.4 90 42-131 114-208 (309)
13 COG3839 MalK ABC-type sugar tr 99.9 6.6E-28 1.4E-32 194.7 7.2 122 1-131 79-206 (338)
14 COG3638 ABC-type phosphate/pho 99.9 3E-28 6.5E-33 187.9 3.7 126 1-130 85-219 (258)
15 COG4175 ProV ABC-type proline/ 99.9 1.8E-27 4E-32 190.2 7.9 88 44-131 147-237 (386)
16 COG2884 FtsE Predicted ATPase 99.9 3.2E-27 6.9E-32 177.7 7.9 84 44-127 120-204 (223)
17 COG4555 NatA ABC-type Na+ tran 99.9 6.2E-28 1.3E-32 183.1 3.6 89 43-131 115-205 (245)
18 TIGR03258 PhnT 2-aminoethylpho 99.9 4.3E-27 9.3E-32 191.7 8.2 88 44-131 120-211 (362)
19 PRK11650 ugpC glycerol-3-phosp 99.9 5.8E-27 1.3E-31 190.5 8.8 88 44-131 117-207 (356)
20 TIGR00960 3a0501s02 Type II (G 99.9 2E-26 4.4E-31 174.0 10.4 87 44-130 121-209 (216)
21 cd03226 ABC_cobalt_CbiO_domain 99.9 3.6E-26 7.8E-31 171.5 11.0 89 43-131 108-198 (205)
22 PRK13537 nodulation ABC transp 99.9 2.1E-26 4.5E-31 183.6 10.2 88 44-131 121-210 (306)
23 cd03225 ABC_cobalt_CbiO_domain 99.9 3E-26 6.4E-31 172.3 10.3 88 44-131 117-206 (211)
24 TIGR01186 proV glycine betaine 99.9 1.2E-26 2.7E-31 189.2 8.2 88 44-131 112-202 (363)
25 PRK11432 fbpC ferric transport 99.9 1.5E-26 3.2E-31 187.9 8.6 88 44-131 119-209 (351)
26 cd03268 ABC_BcrA_bacitracin_re 99.9 1.5E-26 3.3E-31 173.7 8.1 87 44-130 109-197 (208)
27 cd03235 ABC_Metallic_Cations A 99.9 3.9E-26 8.4E-31 172.1 10.1 87 44-130 115-203 (213)
28 TIGR01188 drrA daunorubicin re 99.9 3.6E-26 7.7E-31 181.5 10.4 88 44-131 107-196 (302)
29 TIGR02673 FtsE cell division A 99.9 5E-26 1.1E-30 171.4 10.2 88 43-130 119-208 (214)
30 TIGR03265 PhnT2 putative 2-ami 99.9 1.9E-26 4.1E-31 187.3 8.3 88 44-131 117-207 (353)
31 COG3842 PotA ABC-type spermidi 99.9 1.3E-26 2.8E-31 188.1 7.2 88 44-131 119-209 (352)
32 COG1118 CysA ABC-type sulfate/ 99.9 1.6E-26 3.4E-31 184.0 7.3 88 44-131 120-210 (345)
33 cd03259 ABC_Carb_Solutes_like 99.9 5.1E-26 1.1E-30 171.4 9.7 87 44-130 113-202 (213)
34 COG1123 ATPase components of v 99.9 1.3E-26 2.8E-31 195.8 7.1 88 44-131 411-502 (539)
35 PRK10851 sulfate/thiosulfate t 99.9 3.1E-26 6.8E-31 186.0 9.0 88 44-131 119-209 (353)
36 COG0444 DppD ABC-type dipeptid 99.9 3.7E-26 8.1E-31 182.4 9.0 88 44-131 133-226 (316)
37 cd03261 ABC_Org_Solvent_Resist 99.9 7.1E-26 1.5E-30 173.1 10.2 87 44-130 119-208 (235)
38 PRK13536 nodulation factor exp 99.9 7.3E-26 1.6E-30 183.1 10.5 88 44-131 155-244 (340)
39 PRK09452 potA putrescine/sperm 99.9 3.9E-26 8.5E-31 186.9 8.9 88 44-131 127-217 (375)
40 TIGR02314 ABC_MetN D-methionin 99.9 7.6E-26 1.7E-30 183.3 10.4 88 44-131 123-213 (343)
41 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 1.1E-25 2.4E-30 169.9 9.8 87 44-130 123-211 (218)
42 TIGR02211 LolD_lipo_ex lipopro 99.9 1.3E-25 2.8E-30 169.9 10.2 87 44-130 124-212 (221)
43 PRK11144 modC molybdate transp 99.9 9.4E-26 2E-30 182.9 9.9 88 44-131 111-201 (352)
44 PRK11607 potG putrescine trans 99.9 6.2E-26 1.4E-30 185.8 8.5 88 44-131 132-222 (377)
45 cd03292 ABC_FtsE_transporter F 99.9 1.5E-25 3.3E-30 168.5 10.0 87 44-130 119-207 (214)
46 TIGR01288 nodI ATP-binding ABC 99.9 1.3E-25 2.8E-30 178.3 10.1 88 44-131 118-207 (303)
47 cd03219 ABC_Mj1267_LivG_branch 99.9 1.7E-25 3.7E-30 170.7 10.3 87 44-130 126-214 (236)
48 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.6E-25 3.4E-30 169.7 10.1 87 44-130 114-203 (220)
49 TIGR03522 GldA_ABC_ATP gliding 99.9 2.6E-26 5.7E-31 182.3 5.9 88 43-131 115-204 (301)
50 COG3840 ThiQ ABC-type thiamine 99.9 8.1E-26 1.8E-30 169.6 8.0 88 44-131 112-202 (231)
51 TIGR02142 modC_ABC molybdenum 99.9 9E-26 1.9E-30 183.0 8.8 88 44-131 114-204 (354)
52 cd03256 ABC_PhnC_transporter A 99.9 2.3E-25 5.1E-30 170.2 10.2 87 44-130 127-216 (241)
53 cd03265 ABC_DrrA DrrA is the A 99.9 2.1E-25 4.6E-30 169.0 9.7 87 44-130 114-203 (220)
54 TIGR01184 ntrCD nitrate transp 99.9 2.2E-25 4.8E-30 170.5 9.8 87 44-130 97-186 (230)
55 cd03301 ABC_MalK_N The N-termi 99.9 2.4E-25 5.3E-30 167.5 9.7 87 44-130 113-202 (213)
56 cd03262 ABC_HisP_GlnQ_permease 99.9 3E-25 6.4E-30 166.9 10.2 87 44-130 118-206 (213)
57 cd03266 ABC_NatA_sodium_export 99.9 2E-25 4.4E-30 168.5 9.2 87 44-130 119-207 (218)
58 PRK13637 cbiO cobalt transport 99.9 3.3E-25 7.2E-30 175.0 10.7 89 43-131 124-217 (287)
59 cd03297 ABC_ModC_molybdenum_tr 99.9 2.8E-25 6.1E-30 167.7 9.8 88 44-131 114-204 (214)
60 PRK15093 antimicrobial peptide 99.9 3.8E-25 8.2E-30 177.9 10.8 88 44-131 138-231 (330)
61 PRK13647 cbiO cobalt transport 99.9 3.8E-25 8.2E-30 173.5 10.5 87 44-130 121-209 (274)
62 PRK13641 cbiO cobalt transport 99.9 4.7E-25 1E-29 174.0 11.0 88 44-131 127-217 (287)
63 TIGR03415 ABC_choXWV_ATP choli 99.9 1.8E-25 3.9E-30 183.4 8.8 88 44-131 147-237 (382)
64 cd03218 ABC_YhbG The ABC trans 99.9 4.2E-25 9E-30 168.2 10.1 87 44-130 116-204 (232)
65 PRK10908 cell division protein 99.9 4.7E-25 1E-29 167.3 10.4 87 44-130 120-208 (222)
66 cd03298 ABC_ThiQ_thiamine_tran 99.9 3.8E-25 8.3E-30 166.4 9.8 88 43-130 110-200 (211)
67 cd03296 ABC_CysA_sulfate_impor 99.9 3.5E-25 7.5E-30 169.8 9.7 87 44-130 119-208 (239)
68 TIGR02315 ABC_phnC phosphonate 99.9 3.8E-25 8.3E-30 169.4 9.9 87 44-130 128-217 (243)
69 PRK11264 putative amino-acid A 99.9 4.8E-25 1E-29 169.7 10.5 87 44-130 127-215 (250)
70 PRK15439 autoinducer 2 ABC tra 99.9 2.5E-25 5.5E-30 187.4 9.5 88 44-131 123-212 (510)
71 TIGR03608 L_ocin_972_ABC putat 99.9 6.7E-25 1.4E-29 164.2 10.6 88 44-131 117-205 (206)
72 cd03257 ABC_NikE_OppD_transpor 99.9 4.6E-25 1E-29 167.2 9.9 87 44-130 127-217 (228)
73 PRK11153 metN DL-methionine tr 99.9 4.8E-25 1E-29 178.2 10.4 88 44-131 123-213 (343)
74 PRK13651 cobalt transporter AT 99.9 6.1E-25 1.3E-29 175.2 10.7 88 44-131 147-237 (305)
75 PRK11629 lolD lipoprotein tran 99.9 6.5E-25 1.4E-29 167.8 10.4 87 44-130 128-216 (233)
76 PRK10584 putative ABC transpor 99.9 6.1E-25 1.3E-29 167.1 10.1 87 44-130 129-217 (228)
77 cd03258 ABC_MetN_methionine_tr 99.9 5.7E-25 1.2E-29 167.7 10.0 87 44-130 123-212 (233)
78 PRK13643 cbiO cobalt transport 99.9 7.3E-25 1.6E-29 173.1 10.7 88 44-131 126-216 (288)
79 PRK11022 dppD dipeptide transp 99.9 6.6E-25 1.4E-29 176.5 10.6 88 44-131 133-226 (326)
80 cd03269 ABC_putative_ATPase Th 99.9 5.4E-25 1.2E-29 165.5 9.4 87 44-130 111-199 (210)
81 PRK15079 oligopeptide ABC tran 99.9 6.3E-25 1.4E-29 177.0 10.4 88 44-131 143-234 (331)
82 cd03294 ABC_Pro_Gly_Bertaine T 99.9 6.5E-25 1.4E-29 171.6 10.1 87 44-130 143-232 (269)
83 TIGR03771 anch_rpt_ABC anchore 99.9 8.6E-25 1.9E-29 166.6 10.5 87 44-130 96-184 (223)
84 PRK13638 cbiO cobalt transport 99.9 8.1E-25 1.7E-29 171.0 10.4 87 44-130 119-207 (271)
85 PRK09536 btuD corrinoid ABC tr 99.9 7.5E-25 1.6E-29 180.8 10.8 89 43-131 121-211 (402)
86 PRK11308 dppF dipeptide transp 99.9 7.8E-25 1.7E-29 176.1 10.6 88 44-131 136-227 (327)
87 PRK13634 cbiO cobalt transport 99.9 8.9E-25 1.9E-29 172.7 10.8 87 44-130 127-217 (290)
88 COG4598 HisP ABC-type histidin 99.9 1.9E-25 4E-30 167.9 6.5 88 44-131 135-224 (256)
89 PRK11300 livG leucine/isoleuci 99.9 7.3E-25 1.6E-29 169.1 9.9 87 44-130 136-225 (255)
90 TIGR03410 urea_trans_UrtE urea 99.9 4.3E-25 9.4E-30 168.1 8.5 87 44-130 113-203 (230)
91 PRK13650 cbiO cobalt transport 99.9 8.5E-25 1.8E-29 171.9 10.4 88 43-130 122-211 (279)
92 PRK09493 glnQ glutamine ABC tr 99.9 7.9E-25 1.7E-29 167.8 10.0 87 44-130 119-207 (240)
93 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1E-24 2.2E-29 166.4 10.5 87 44-130 125-213 (224)
94 cd03214 ABC_Iron-Siderophores_ 99.9 1E-24 2.2E-29 161.2 9.9 86 45-130 81-169 (180)
95 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1E-24 2.2E-29 167.0 10.2 87 44-130 115-203 (236)
96 PRK11000 maltose/maltodextrin 99.9 8.2E-25 1.8E-29 178.5 10.2 88 44-131 116-206 (369)
97 COG0411 LivG ABC-type branched 99.9 5.4E-25 1.2E-29 170.3 8.6 89 43-131 131-222 (250)
98 PRK11831 putative ABC transpor 99.9 9.6E-25 2.1E-29 170.6 10.1 87 44-130 126-215 (269)
99 PRK10619 histidine/lysine/argi 99.9 1.4E-24 3E-29 168.2 10.8 87 44-130 134-223 (257)
100 PRK11248 tauB taurine transpor 99.9 1E-24 2.3E-29 169.5 10.1 87 44-130 111-200 (255)
101 COG1123 ATPase components of v 99.9 5.9E-25 1.3E-29 185.8 9.4 88 44-131 135-227 (539)
102 PRK13644 cbiO cobalt transport 99.9 1.2E-24 2.7E-29 170.6 10.5 87 44-130 119-206 (274)
103 PRK11231 fecE iron-dicitrate t 99.9 1.2E-24 2.5E-29 168.5 10.1 87 44-130 121-209 (255)
104 TIGR01187 potA spermidine/putr 99.9 1.3E-24 2.9E-29 174.5 10.6 88 44-131 83-173 (325)
105 TIGR02770 nickel_nikD nickel i 99.9 1.2E-24 2.5E-29 166.2 9.8 88 44-131 105-198 (230)
106 TIGR03411 urea_trans_UrtD urea 99.9 1.5E-24 3.3E-29 166.2 10.4 86 44-130 126-213 (242)
107 cd03264 ABC_drug_resistance_li 99.9 1E-24 2.2E-29 164.1 9.2 86 44-130 113-200 (211)
108 cd03260 ABC_PstB_phosphate_tra 99.9 1.7E-24 3.7E-29 164.5 10.4 86 44-130 122-211 (227)
109 cd03224 ABC_TM1139_LivF_branch 99.9 1.1E-24 2.4E-29 164.7 9.3 87 44-130 114-203 (222)
110 TIGR02324 CP_lyasePhnL phospho 99.9 2.3E-24 5E-29 163.5 11.0 87 44-130 131-220 (224)
111 PRK13631 cbiO cobalt transport 99.9 1.7E-24 3.6E-29 173.8 10.7 88 44-131 158-248 (320)
112 PRK09473 oppD oligopeptide tra 99.9 1.6E-24 3.5E-29 174.5 10.6 88 44-131 141-234 (330)
113 PRK10771 thiQ thiamine transpo 99.9 1.5E-24 3.3E-29 165.6 9.9 87 44-130 112-201 (232)
114 PRK11247 ssuB aliphatic sulfon 99.9 1.7E-24 3.6E-29 168.9 10.3 87 44-130 116-205 (257)
115 PRK13649 cbiO cobalt transport 99.9 2E-24 4.4E-29 169.3 10.7 87 44-130 127-216 (280)
116 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.4E-24 3.1E-29 166.7 9.6 87 44-130 116-207 (242)
117 PRK13633 cobalt transporter AT 99.9 1.8E-24 3.9E-29 170.0 10.2 89 43-131 126-216 (280)
118 PRK11124 artP arginine transpo 99.9 2E-24 4.3E-29 165.7 10.3 87 44-130 124-212 (242)
119 PRK15056 manganese/iron transp 99.9 2.2E-24 4.8E-29 168.7 10.6 87 44-130 125-213 (272)
120 PRK13646 cbiO cobalt transport 99.9 2.1E-24 4.7E-29 170.1 10.6 87 44-130 127-217 (286)
121 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.5E-24 3.3E-29 168.2 9.6 87 44-130 98-187 (246)
122 TIGR03740 galliderm_ABC gallid 99.9 1.5E-24 3.2E-29 164.6 9.3 87 44-130 107-195 (223)
123 PRK09700 D-allose transporter 99.9 1.9E-24 4.1E-29 181.7 10.7 88 44-131 391-481 (510)
124 TIGR01978 sufC FeS assembly AT 99.9 2.8E-24 6.1E-29 164.4 10.7 87 44-130 125-216 (243)
125 COG4181 Predicted ABC-type tra 99.9 1.1E-24 2.3E-29 162.5 8.1 87 44-130 129-217 (228)
126 PRK13549 xylose transporter AT 99.9 1.7E-24 3.6E-29 182.0 10.3 87 44-130 387-476 (506)
127 PRK13652 cbiO cobalt transport 99.9 2.3E-24 5E-29 169.2 10.4 88 43-130 119-209 (277)
128 PRK13635 cbiO cobalt transport 99.9 2.3E-24 4.9E-29 169.6 10.3 87 44-130 123-211 (279)
129 PRK10575 iron-hydroxamate tran 99.9 2.3E-24 4.9E-29 168.0 10.1 88 43-130 129-219 (265)
130 PRK13639 cbiO cobalt transport 99.9 2.6E-24 5.7E-29 168.7 10.5 87 44-130 120-208 (275)
131 TIGR01277 thiQ thiamine ABC tr 99.9 2.3E-24 5.1E-29 162.7 9.9 87 44-130 111-200 (213)
132 PRK13636 cbiO cobalt transport 99.9 2.5E-24 5.4E-29 169.5 10.4 87 44-130 124-213 (283)
133 TIGR01166 cbiO cobalt transpor 99.9 2.1E-24 4.5E-29 160.3 9.1 80 44-123 110-190 (190)
134 PRK14250 phosphate ABC transpo 99.9 3.1E-24 6.8E-29 165.0 10.3 87 44-130 113-203 (241)
135 PRK10070 glycine betaine trans 99.9 2.8E-24 6.1E-29 177.3 10.7 88 44-131 147-237 (400)
136 COG4152 ABC-type uncharacteriz 99.9 1.3E-24 2.7E-29 169.1 8.1 88 44-131 113-202 (300)
137 cd03267 ABC_NatA_like Similar 99.9 3E-24 6.5E-29 164.8 10.1 87 44-130 136-225 (236)
138 PRK10895 lipopolysaccharide AB 99.9 2.7E-24 5.9E-29 164.9 9.9 87 44-130 120-208 (241)
139 PRK13645 cbiO cobalt transport 99.9 2.9E-24 6.4E-29 169.3 10.3 87 44-130 132-222 (289)
140 PRK10938 putative molybdenum t 99.9 2.4E-24 5.3E-29 180.1 10.3 88 44-131 118-207 (490)
141 PRK09984 phosphonate/organopho 99.9 2.5E-24 5.5E-29 167.2 9.6 87 44-130 135-224 (262)
142 PRK11288 araG L-arabinose tran 99.9 2.9E-24 6.2E-29 180.4 10.6 87 44-130 378-467 (501)
143 PRK10253 iron-enterobactin tra 99.9 3.2E-24 6.8E-29 167.2 10.1 88 43-130 125-215 (265)
144 cd03263 ABC_subfamily_A The AB 99.9 2.5E-24 5.3E-29 162.8 9.2 86 44-130 116-203 (220)
145 PRK09700 D-allose transporter 99.9 3.4E-24 7.3E-29 180.2 10.9 87 44-130 128-216 (510)
146 TIGR00972 3a0107s01c2 phosphat 99.9 4.1E-24 8.8E-29 164.6 10.5 86 44-130 123-214 (247)
147 PRK15439 autoinducer 2 ABC tra 99.9 2.7E-24 5.8E-29 181.2 10.2 88 44-131 385-475 (510)
148 TIGR03873 F420-0_ABC_ATP propo 99.9 3.9E-24 8.5E-29 165.6 10.3 87 44-130 120-208 (256)
149 PRK13548 hmuV hemin importer A 99.9 4.1E-24 8.9E-29 166.1 10.4 87 44-130 117-212 (258)
150 cd03238 ABC_UvrA The excision 99.9 7.2E-24 1.6E-28 157.7 11.2 87 44-130 69-159 (176)
151 PRK11701 phnK phosphonate C-P 99.9 3.7E-24 8E-29 165.9 10.1 87 44-130 133-223 (258)
152 PRK10762 D-ribose transporter 99.9 3.4E-24 7.3E-29 180.0 10.6 88 44-131 124-213 (501)
153 PRK11614 livF leucine/isoleuci 99.9 2.1E-24 4.5E-29 165.1 8.5 86 45-130 120-208 (237)
154 TIGR02323 CP_lyasePhnK phospho 99.9 3.8E-24 8.2E-29 165.1 9.9 87 44-130 130-220 (253)
155 PRK14268 phosphate ABC transpo 99.9 4.5E-24 9.8E-29 165.6 10.3 86 44-130 133-224 (258)
156 PRK10418 nikD nickel transport 99.9 5.2E-24 1.1E-28 164.9 10.7 88 43-130 119-212 (254)
157 PRK15112 antimicrobial peptide 99.9 3.8E-24 8.1E-29 167.0 9.9 87 44-130 131-221 (267)
158 TIGR02769 nickel_nikE nickel i 99.9 4.3E-24 9.3E-29 166.4 10.2 87 44-130 132-222 (265)
159 PRK13543 cytochrome c biogenes 99.9 5.6E-24 1.2E-28 161.0 10.5 87 44-130 120-208 (214)
160 cd03270 ABC_UvrA_I The excisio 99.9 7.3E-24 1.6E-28 162.3 11.2 88 44-131 119-210 (226)
161 PRK13549 xylose transporter AT 99.9 4.4E-24 9.5E-29 179.5 10.8 88 44-131 126-215 (506)
162 PRK09544 znuC high-affinity zi 99.9 4.1E-24 8.9E-29 166.0 9.8 87 44-130 103-192 (251)
163 PRK13642 cbiO cobalt transport 99.9 5.2E-24 1.1E-28 167.1 10.4 88 44-131 123-212 (277)
164 TIGR02633 xylG D-xylose ABC tr 99.9 4.4E-24 9.5E-29 179.0 10.5 87 44-130 385-474 (500)
165 PRK14245 phosphate ABC transpo 99.9 6.7E-24 1.5E-28 163.7 10.7 87 44-131 125-217 (250)
166 PRK10762 D-ribose transporter 99.9 4.8E-24 1E-28 179.1 10.6 88 44-131 377-467 (501)
167 PRK13648 cbiO cobalt transport 99.9 6E-24 1.3E-28 165.9 10.4 87 44-130 125-213 (269)
168 PRK15134 microcin C ABC transp 99.9 4.1E-24 8.9E-29 180.5 10.0 88 44-131 136-229 (529)
169 PRK13539 cytochrome c biogenes 99.9 5.9E-24 1.3E-28 160.2 9.8 87 43-130 109-196 (207)
170 PRK14242 phosphate transporter 99.9 7.6E-24 1.6E-28 163.4 10.5 86 44-130 128-219 (253)
171 COG4148 ModC ABC-type molybdat 99.9 1.3E-24 2.8E-29 171.7 6.2 88 44-131 111-201 (352)
172 TIGR03005 ectoine_ehuA ectoine 99.9 6.1E-24 1.3E-28 164.0 9.9 87 44-130 129-218 (252)
173 TIGR02633 xylG D-xylose ABC tr 99.9 6.7E-24 1.5E-28 177.9 10.9 88 44-131 123-213 (500)
174 cd03252 ABCC_Hemolysin The ABC 99.9 7.7E-24 1.7E-28 161.8 10.3 76 54-130 132-207 (237)
175 PRK09580 sufC cysteine desulfu 99.9 1E-23 2.2E-28 162.0 10.9 87 44-130 126-217 (248)
176 PRK10247 putative ABC transpor 99.9 8.2E-24 1.8E-28 161.2 10.3 87 44-130 119-208 (225)
177 PRK03695 vitamin B12-transport 99.9 8E-24 1.7E-28 163.7 10.4 88 44-131 109-205 (248)
178 PRK10261 glutathione transport 99.9 4.9E-24 1.1E-28 183.6 10.2 88 44-131 445-536 (623)
179 PRK10982 galactose/methyl gala 99.9 5.2E-24 1.1E-28 178.3 10.1 88 44-131 373-463 (491)
180 PRK10261 glutathione transport 99.9 5.7E-24 1.2E-28 183.2 10.5 88 44-131 148-241 (623)
181 PRK14247 phosphate ABC transpo 99.9 8.1E-24 1.7E-28 163.0 10.2 86 44-130 125-216 (250)
182 PRK10982 galactose/methyl gala 99.9 7.5E-24 1.6E-28 177.4 10.9 87 44-130 117-205 (491)
183 PRK11288 araG L-arabinose tran 99.9 7.7E-24 1.7E-28 177.8 10.9 87 44-130 123-211 (501)
184 PRK13640 cbiO cobalt transport 99.9 8.1E-24 1.8E-28 166.6 10.4 87 44-130 126-214 (282)
185 CHL00131 ycf16 sulfate ABC tra 99.9 1.1E-23 2.3E-28 162.4 10.7 87 44-130 132-223 (252)
186 PRK15134 microcin C ABC transp 99.9 5.9E-24 1.3E-28 179.5 10.1 88 44-131 407-498 (529)
187 TIGR03269 met_CoM_red_A2 methy 99.9 6E-24 1.3E-28 179.0 10.1 88 44-131 151-241 (520)
188 cd03248 ABCC_TAP TAP, the Tran 99.9 1E-23 2.2E-28 160.2 10.4 86 44-130 131-219 (226)
189 cd03300 ABC_PotA_N PotA is an 99.9 9.8E-24 2.1E-28 161.3 10.4 87 44-130 113-202 (232)
190 PRK13538 cytochrome c biogenes 99.9 8.9E-24 1.9E-28 158.8 9.9 84 44-127 112-196 (204)
191 cd03231 ABC_CcmA_heme_exporter 99.9 1.2E-23 2.6E-28 157.9 10.4 87 44-130 108-196 (201)
192 PRK14273 phosphate ABC transpo 99.9 9.4E-24 2E-28 163.2 9.8 86 44-130 129-220 (254)
193 PRK13632 cbiO cobalt transport 99.9 8.9E-24 1.9E-28 165.3 9.7 87 44-130 125-213 (271)
194 TIGR03269 met_CoM_red_A2 methy 99.9 8.7E-24 1.9E-28 178.1 10.1 88 44-131 405-500 (520)
195 PRK14244 phosphate ABC transpo 99.9 1.5E-23 3.2E-28 161.8 10.3 86 44-130 128-219 (251)
196 cd03299 ABC_ModC_like Archeal 99.9 1.3E-23 2.8E-28 161.0 9.9 87 44-130 112-201 (235)
197 COG1137 YhbG ABC-type (unclass 99.9 3.3E-24 7.1E-29 162.7 6.4 88 44-131 122-211 (243)
198 PRK14267 phosphate ABC transpo 99.9 1.4E-23 3E-28 162.0 10.0 87 44-131 128-220 (253)
199 PRK14241 phosphate transporter 99.9 1.4E-23 3.1E-28 162.7 10.1 86 44-130 127-218 (258)
200 PRK10744 pstB phosphate transp 99.9 1.4E-23 3.1E-28 163.0 9.8 86 44-130 135-226 (260)
201 PRK13540 cytochrome c biogenes 99.9 1.9E-23 4.2E-28 156.5 10.1 87 44-130 110-197 (200)
202 cd03246 ABCC_Protease_Secretio 99.9 1.5E-23 3.3E-28 154.0 9.3 70 61-130 97-166 (173)
203 PRK14235 phosphate transporter 99.9 1.8E-23 3.8E-28 163.3 10.2 87 44-131 142-234 (267)
204 cd03234 ABCG_White The White s 99.9 1.9E-23 4.2E-28 159.0 10.0 86 45-130 127-215 (226)
205 cd03251 ABCC_MsbA MsbA is an e 99.9 2.3E-23 5E-28 158.8 10.3 76 54-130 132-207 (234)
206 PRK14248 phosphate ABC transpo 99.9 1.6E-23 3.5E-28 163.3 9.6 86 44-130 143-234 (268)
207 PRK14269 phosphate ABC transpo 99.9 2.1E-23 4.6E-28 160.7 10.1 86 44-130 121-212 (246)
208 COG4172 ABC-type uncharacteriz 99.9 3.4E-24 7.5E-29 176.0 6.0 88 44-131 137-230 (534)
209 PRK14259 phosphate ABC transpo 99.9 2.6E-23 5.6E-28 162.6 10.6 87 44-131 133-225 (269)
210 TIGR02982 heterocyst_DevA ABC 99.9 2.2E-23 4.8E-28 158.1 9.9 87 44-130 124-212 (220)
211 PRK14239 phosphate transporter 99.9 2.1E-23 4.5E-28 160.7 9.8 86 44-130 127-218 (252)
212 PRK14251 phosphate ABC transpo 99.9 2E-23 4.4E-28 160.9 9.8 86 44-130 126-217 (251)
213 cd03216 ABC_Carb_Monos_I This 99.9 2.2E-23 4.8E-28 152.3 9.5 71 60-130 82-153 (163)
214 PRK13547 hmuV hemin importer A 99.9 2.9E-23 6.2E-28 163.1 10.3 89 43-131 127-227 (272)
215 PRK10419 nikE nickel transport 99.9 3.4E-23 7.4E-28 161.9 10.5 87 44-130 133-223 (268)
216 cd03245 ABCC_bacteriocin_expor 99.9 2.3E-23 4.9E-28 157.5 9.2 73 57-130 137-209 (220)
217 PRK14240 phosphate transporter 99.9 3E-23 6.5E-28 159.9 10.0 86 44-130 125-216 (250)
218 PRK14258 phosphate ABC transpo 99.9 4.3E-23 9.4E-28 160.5 10.9 88 44-131 129-223 (261)
219 PRK11174 cysteine/glutathione 99.9 1.9E-23 4.2E-28 177.8 9.6 75 55-130 480-554 (588)
220 PRK13409 putative ATPase RIL; 99.9 2.2E-23 4.8E-28 178.9 10.1 87 44-130 436-525 (590)
221 PRK13546 teichoic acids export 99.9 4.5E-23 9.8E-28 161.5 10.6 87 44-130 126-214 (264)
222 PRK14270 phosphate ABC transpo 99.9 4.1E-23 8.9E-28 159.4 10.2 86 44-130 126-217 (251)
223 cd03236 ABC_RNaseL_inhibitor_d 99.9 4.8E-23 1E-27 160.7 10.7 87 44-130 122-210 (255)
224 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 3.1E-23 6.6E-28 158.6 9.3 76 54-130 133-208 (238)
225 PRK14256 phosphate ABC transpo 99.9 3.9E-23 8.5E-28 159.5 10.0 87 44-131 127-219 (252)
226 cd03215 ABC_Carb_Monos_II This 99.9 3.3E-23 7.1E-28 153.4 9.1 71 61-131 105-176 (182)
227 PRK14274 phosphate ABC transpo 99.9 4.2E-23 9.2E-28 160.1 10.1 86 44-130 134-225 (259)
228 TIGR00968 3a0106s01 sulfate AB 99.9 4.2E-23 9.1E-28 158.4 9.9 87 44-130 113-202 (237)
229 PRK14253 phosphate ABC transpo 99.9 4.7E-23 1E-27 158.7 10.1 85 45-130 125-215 (249)
230 PRK14249 phosphate ABC transpo 99.9 5E-23 1.1E-27 158.9 10.3 85 45-130 127-217 (251)
231 PRK14265 phosphate ABC transpo 99.9 4.9E-23 1.1E-27 161.6 10.2 86 45-131 141-232 (274)
232 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.8E-23 3.8E-28 164.9 7.6 87 43-130 109-207 (275)
233 PRK14254 phosphate ABC transpo 99.9 4.5E-23 9.7E-28 162.8 9.9 86 44-130 159-250 (285)
234 cd03229 ABC_Class3 This class 99.9 4.3E-23 9.2E-28 152.3 9.2 70 61-130 101-172 (178)
235 PRK13541 cytochrome c biogenes 99.9 4E-23 8.7E-28 154.2 9.1 86 44-129 106-192 (195)
236 PRK14262 phosphate ABC transpo 99.9 5.9E-23 1.3E-27 158.2 10.2 86 44-130 125-216 (250)
237 cd03230 ABC_DR_subfamily_A Thi 99.9 4.3E-23 9.4E-28 151.6 9.0 70 61-130 96-166 (173)
238 COG4172 ABC-type uncharacteriz 99.9 1.3E-23 2.7E-28 172.7 6.7 87 44-130 408-498 (534)
239 PRK14255 phosphate ABC transpo 99.9 6E-23 1.3E-27 158.3 10.1 85 45-130 128-218 (252)
240 PRK14260 phosphate ABC transpo 99.9 5.7E-23 1.2E-27 159.5 10.0 87 44-131 129-221 (259)
241 cd03254 ABCC_Glucan_exporter_l 99.9 4.6E-23 9.9E-28 156.7 9.1 76 54-130 133-208 (229)
242 cd03253 ABCC_ATM1_transporter 99.9 4.4E-23 9.6E-28 157.4 9.1 76 54-130 131-206 (236)
243 COG4161 ArtP ABC-type arginine 99.9 2.5E-23 5.3E-28 154.5 7.3 87 44-130 124-212 (242)
244 PRK14275 phosphate ABC transpo 99.9 6.6E-23 1.4E-27 161.8 10.0 86 44-130 161-252 (286)
245 PRK14236 phosphate transporter 99.9 8.3E-23 1.8E-27 159.9 10.3 86 44-130 147-238 (272)
246 cd03271 ABC_UvrA_II The excisi 99.9 1.4E-22 3.1E-27 159.0 11.5 87 44-130 151-242 (261)
247 PRK13545 tagH teichoic acids e 99.9 7.3E-23 1.6E-27 173.5 10.4 87 44-130 126-214 (549)
248 COG4608 AppF ABC-type oligopep 99.9 3.9E-23 8.4E-28 162.0 8.0 88 44-131 91-182 (268)
249 PRK14237 phosphate transporter 99.9 1.1E-22 2.4E-27 158.7 10.4 86 44-130 142-233 (267)
250 PRK10938 putative molybdenum t 99.9 5.4E-23 1.2E-27 172.1 9.2 88 44-131 383-475 (490)
251 PRK14272 phosphate ABC transpo 99.9 8.1E-23 1.8E-27 157.5 9.4 76 54-130 142-218 (252)
252 cd03247 ABCC_cytochrome_bd The 99.9 8.1E-23 1.8E-27 150.6 9.0 72 58-130 96-167 (178)
253 cd03369 ABCC_NFT1 Domain 2 of 99.9 9.5E-23 2.1E-27 153.1 9.5 76 54-130 119-194 (207)
254 PRK14263 phosphate ABC transpo 99.9 1.2E-22 2.6E-27 158.4 10.4 87 44-131 128-220 (261)
255 PRK14243 phosphate transporter 99.9 8.5E-23 1.8E-27 159.2 9.5 86 45-131 131-222 (264)
256 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.1E-22 2.3E-27 152.8 9.5 75 56-130 100-176 (200)
257 COG1129 MglA ABC-type sugar tr 99.9 3.2E-23 7E-28 174.1 7.1 88 44-131 128-217 (500)
258 cd03290 ABCC_SUR1_N The SUR do 99.9 1.2E-22 2.5E-27 153.8 9.5 76 55-130 135-212 (218)
259 TIGR01189 ccmA heme ABC export 99.9 1.2E-22 2.7E-27 151.8 9.2 80 44-123 110-190 (198)
260 COG4525 TauB ABC-type taurine 99.9 2.6E-23 5.7E-28 157.7 5.6 87 44-130 115-204 (259)
261 COG3845 ABC-type uncharacteriz 99.9 8.9E-23 1.9E-27 170.0 8.9 88 44-131 123-212 (501)
262 cd03228 ABCC_MRP_Like The MRP 99.9 1.3E-22 2.9E-27 148.8 8.8 69 61-130 97-165 (171)
263 cd03244 ABCC_MRP_domain2 Domai 99.9 1.6E-22 3.5E-27 152.9 9.6 75 55-130 134-208 (221)
264 PRK14261 phosphate ABC transpo 99.9 1.8E-22 3.9E-27 155.9 9.8 86 44-130 128-219 (253)
265 cd03232 ABC_PDR_domain2 The pl 99.9 1.5E-22 3.3E-27 151.0 9.1 71 60-130 108-180 (192)
266 PRK14238 phosphate transporter 99.9 1.5E-22 3.3E-27 158.4 9.5 76 54-130 161-237 (271)
267 cd03213 ABCG_EPDR ABCG transpo 99.9 1.8E-22 3.9E-27 151.0 9.2 71 60-130 111-183 (194)
268 PRK14271 phosphate ABC transpo 99.9 2.5E-22 5.3E-27 157.8 10.4 86 44-130 142-233 (276)
269 PRK11176 lipid transporter ATP 99.9 1.3E-22 2.8E-27 172.4 9.5 73 57-130 477-549 (582)
270 PRK13409 putative ATPase RIL; 99.9 2.2E-22 4.8E-27 172.8 10.6 86 44-130 195-282 (590)
271 PRK14266 phosphate ABC transpo 99.9 2.6E-22 5.6E-27 154.6 9.9 86 44-130 125-216 (250)
272 PRK14264 phosphate ABC transpo 99.9 2.6E-22 5.7E-27 159.7 10.1 85 44-129 179-269 (305)
273 PRK14246 phosphate ABC transpo 99.9 3.1E-22 6.7E-27 155.7 10.2 86 44-130 132-223 (257)
274 cd03222 ABC_RNaseL_inhibitor T 99.9 2.8E-22 6.1E-27 149.2 9.4 70 61-130 72-143 (177)
275 cd03250 ABCC_MRP_domain1 Domai 99.9 2.9E-22 6.2E-27 150.2 9.4 77 54-130 121-198 (204)
276 cd03223 ABCD_peroxisomal_ALDP 99.9 3.3E-22 7.2E-27 146.4 9.5 71 57-130 88-158 (166)
277 TIGR01257 rim_protein retinal- 99.9 1.8E-22 3.9E-27 190.4 10.1 88 44-131 2053-2142(2272)
278 PRK14252 phosphate ABC transpo 99.9 4.8E-22 1E-26 154.8 10.1 86 44-130 140-231 (265)
279 TIGR02203 MsbA_lipidA lipid A 99.9 2.7E-22 5.8E-27 169.9 9.3 73 57-130 466-538 (571)
280 PRK14257 phosphate ABC transpo 99.9 3.9E-22 8.5E-27 160.7 9.5 86 45-131 205-296 (329)
281 cd03288 ABCC_SUR2 The SUR doma 99.9 9.7E-22 2.1E-26 152.6 10.4 76 54-130 150-225 (257)
282 PRK11819 putative ABC transpor 99.9 5.9E-22 1.3E-26 168.6 10.0 84 44-130 147-231 (556)
283 PRK10790 putative multidrug tr 99.9 3.6E-22 7.8E-27 170.3 8.7 74 56-130 472-545 (592)
284 PRK15064 ABC transporter ATP-b 99.9 6E-22 1.3E-26 167.4 9.6 84 44-130 420-506 (530)
285 PRK11160 cysteine/glutathione 99.9 5.6E-22 1.2E-26 169.1 9.2 73 57-130 472-544 (574)
286 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 5.7E-22 1.2E-26 172.2 9.2 72 56-130 611-682 (710)
287 TIGR01193 bacteriocin_ABC ABC- 99.9 4.6E-22 1E-26 172.9 8.5 74 55-130 606-679 (708)
288 COG0410 LivF ABC-type branched 99.9 1.5E-21 3.2E-26 150.2 10.2 86 45-130 119-208 (237)
289 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 6.3E-22 1.4E-26 171.5 9.1 72 56-130 584-655 (686)
290 PTZ00265 multidrug resistance 99.9 5.8E-22 1.3E-26 183.5 9.2 76 56-131 1354-1430(1466)
291 TIGR01257 rim_protein retinal- 99.9 9.5E-22 2.1E-26 185.5 10.7 87 44-131 1044-1132(2272)
292 PRK15064 ABC transporter ATP-b 99.9 1.1E-21 2.3E-26 165.8 9.9 85 44-131 137-224 (530)
293 cd03233 ABC_PDR_domain1 The pl 99.9 1.4E-21 3E-26 147.1 9.2 77 54-130 112-191 (202)
294 COG4988 CydD ABC-type transpor 99.9 7.4E-22 1.6E-26 167.1 8.5 75 56-131 452-526 (559)
295 PRK10636 putative ABC transpor 99.9 1.1E-21 2.3E-26 169.6 9.6 84 44-130 412-498 (638)
296 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.3E-21 2.8E-26 166.2 9.9 84 44-130 145-229 (552)
297 TIGR01842 type_I_sec_PrtD type 99.9 2.2E-21 4.7E-26 164.3 10.9 77 54-130 448-524 (544)
298 COG1132 MdlB ABC-type multidru 99.9 1.2E-21 2.5E-26 166.5 9.3 76 55-131 460-535 (567)
299 TIGR02204 MsbA_rel ABC transpo 99.9 1.2E-21 2.7E-26 166.1 9.2 75 55-130 471-545 (576)
300 KOG0055|consensus 99.9 4.4E-22 9.5E-27 179.3 6.7 76 55-131 484-559 (1228)
301 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.7E-21 3.8E-26 165.5 10.0 84 44-130 425-511 (552)
302 PRK10636 putative ABC transpor 99.9 1.6E-21 3.4E-26 168.6 9.8 84 44-130 131-217 (638)
303 PRK11147 ABC transporter ATPas 99.9 2.4E-21 5.2E-26 167.2 10.3 83 44-130 141-224 (635)
304 PRK11819 putative ABC transpor 99.9 2.2E-21 4.9E-26 165.0 9.9 84 44-130 427-513 (556)
305 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 2.9E-21 6.2E-26 138.8 8.9 69 59-130 69-138 (144)
306 PRK15177 Vi polysaccharide exp 99.9 2.3E-21 5E-26 147.2 8.6 86 45-131 88-175 (213)
307 PLN03211 ABC transporter G-25; 99.9 2.4E-21 5.2E-26 168.1 9.8 88 44-131 184-279 (659)
308 TIGR00958 3a01208 Conjugate Tr 99.8 1.4E-21 3.1E-26 170.3 7.8 73 55-130 612-684 (711)
309 cd00267 ABC_ATPase ABC (ATP-bi 99.8 6.2E-21 1.3E-25 137.7 9.7 71 60-130 80-151 (157)
310 cd03278 ABC_SMC_barmotin Barmo 99.8 7.7E-21 1.7E-25 143.1 10.1 77 53-130 106-186 (197)
311 TIGR02857 CydD thiol reductant 99.8 4.4E-21 9.6E-26 161.6 9.5 74 56-130 454-527 (529)
312 PRK10535 macrolide transporter 99.8 7E-21 1.5E-25 164.8 10.6 87 44-130 127-214 (648)
313 cd03291 ABCC_CFTR1 The CFTR su 99.8 8.5E-21 1.8E-25 150.1 9.9 75 55-130 154-229 (282)
314 TIGR01192 chvA glucan exporter 99.8 6E-21 1.3E-25 163.2 9.7 76 54-130 465-540 (585)
315 COG1129 MglA ABC-type sugar tr 99.8 5.8E-21 1.3E-25 160.5 9.2 88 44-131 383-473 (500)
316 cd03279 ABC_sbcCD SbcCD and ot 99.8 1.1E-20 2.4E-25 143.2 9.6 77 54-130 117-204 (213)
317 COG2274 SunT ABC-type bacterio 99.8 5.3E-21 1.1E-25 167.0 8.9 76 55-131 604-679 (709)
318 PRK11147 ABC transporter ATPas 99.8 7.2E-21 1.6E-25 164.2 9.5 84 44-130 422-508 (635)
319 KOG0055|consensus 99.8 3.4E-21 7.4E-26 173.6 7.2 76 55-131 1121-1196(1228)
320 PRK00349 uvrA excinuclease ABC 99.8 1.1E-20 2.4E-25 168.9 10.2 86 45-130 472-561 (943)
321 PRK13657 cyclic beta-1,2-gluca 99.8 1.2E-20 2.6E-25 160.9 9.9 74 56-130 467-540 (588)
322 PLN03073 ABC transporter F fam 99.8 1.3E-20 2.8E-25 164.9 10.3 84 44-130 609-695 (718)
323 TIGR02868 CydC thiol reductant 99.8 7.5E-21 1.6E-25 160.2 8.4 64 56-120 466-529 (529)
324 TIGR01194 cyc_pep_trnsptr cycl 99.8 1.9E-20 4.1E-25 159.3 10.9 87 44-130 447-541 (555)
325 TIGR00630 uvra excinuclease AB 99.8 1.6E-20 3.6E-25 167.6 10.7 86 45-130 470-559 (924)
326 TIGR03375 type_I_sec_LssB type 99.8 1.6E-20 3.4E-25 163.0 9.8 75 55-130 596-670 (694)
327 PRK10789 putative multidrug tr 99.8 1.6E-20 3.5E-25 160.0 9.6 75 55-130 446-520 (569)
328 PRK10522 multidrug transporter 99.8 2.5E-20 5.5E-25 158.0 10.6 73 58-130 447-520 (547)
329 TIGR00955 3a01204 The Eye Pigm 99.8 1.5E-20 3.2E-25 161.9 9.1 89 43-131 142-239 (617)
330 PLN03073 ABC transporter F fam 99.8 1.9E-20 4.2E-25 163.8 9.9 84 44-130 326-412 (718)
331 TIGR00954 3a01203 Peroxysomal 99.8 1.9E-20 4.1E-25 162.4 9.6 84 44-130 556-649 (659)
332 COG1119 ModF ABC-type molybden 99.8 2.8E-20 6E-25 144.3 9.3 83 44-126 154-239 (257)
333 cd03273 ABC_SMC2_euk Eukaryoti 99.8 4.8E-20 1E-24 142.6 10.4 75 55-130 161-239 (251)
334 cd03276 ABC_SMC6_euk Eukaryoti 99.8 2E-20 4.4E-25 140.9 8.0 79 53-131 102-187 (198)
335 TIGR01846 type_I_sec_HlyB type 99.8 3.2E-20 7E-25 161.2 10.2 75 55-130 588-662 (694)
336 COG4987 CydC ABC-type transpor 99.8 1.9E-20 4.2E-25 157.6 8.0 75 56-131 470-544 (573)
337 PLN03140 ABC transporter G fam 99.8 3.7E-20 8.1E-25 171.5 10.6 88 44-131 997-1092(1470)
338 KOG0057|consensus 99.8 1.4E-20 3E-25 158.7 7.0 76 55-131 482-557 (591)
339 COG4674 Uncharacterized ABC-ty 99.8 9.1E-21 2E-25 143.7 5.2 127 3-130 87-217 (249)
340 KOG0059|consensus 99.8 2.1E-20 4.6E-25 166.6 8.5 89 43-131 680-770 (885)
341 COG4604 CeuD ABC-type enteroch 99.8 6.1E-21 1.3E-25 144.9 4.1 87 44-130 118-207 (252)
342 PTZ00265 multidrug resistance 99.8 3.2E-20 7E-25 172.0 9.7 77 55-131 574-651 (1466)
343 cd03272 ABC_SMC3_euk Eukaryoti 99.8 7.1E-20 1.5E-24 140.2 10.0 76 54-130 152-231 (243)
344 PLN03232 ABC transporter C fam 99.8 3.4E-20 7.4E-25 172.1 9.8 76 55-131 1366-1441(1495)
345 cd03275 ABC_SMC1_euk Eukaryoti 99.8 3.4E-20 7.4E-25 143.4 8.0 75 56-130 151-229 (247)
346 COG4619 ABC-type uncharacteriz 99.8 3.7E-20 8E-25 137.9 7.5 87 44-130 115-205 (223)
347 COG4559 ABC-type hemin transpo 99.8 3.9E-20 8.4E-25 141.6 7.3 89 43-131 117-213 (259)
348 PLN03130 ABC transporter C fam 99.8 3.6E-20 7.9E-25 172.9 8.4 76 55-131 1369-1444(1622)
349 cd03240 ABC_Rad50 The catalyti 99.8 8.1E-20 1.8E-24 138.1 8.5 76 55-130 110-193 (204)
350 TIGR00956 3a01205 Pleiotropic 99.8 7.8E-20 1.7E-24 168.9 10.0 87 44-130 880-974 (1394)
351 TIGR00957 MRP_assoc_pro multi 99.8 5.9E-20 1.3E-24 170.8 8.6 75 56-131 1417-1491(1522)
352 COG0488 Uup ATPase components 99.8 1.2E-19 2.6E-24 154.2 9.7 84 44-130 137-221 (530)
353 PRK00349 uvrA excinuclease ABC 99.8 2E-19 4.3E-24 160.9 11.4 87 44-130 812-903 (943)
354 COG4586 ABC-type uncharacteriz 99.8 8.9E-20 1.9E-24 143.8 7.8 87 44-130 139-228 (325)
355 cd03274 ABC_SMC4_euk Eukaryoti 99.8 1.4E-19 3E-24 137.8 8.0 87 44-131 110-201 (212)
356 KOG0058|consensus 99.8 9.6E-20 2.1E-24 157.3 7.5 76 55-131 599-674 (716)
357 TIGR00630 uvra excinuclease AB 99.8 3.4E-19 7.3E-24 159.2 11.0 87 44-130 810-901 (924)
358 PTZ00243 ABC transporter; Prov 99.8 1.5E-19 3.3E-24 168.3 8.9 74 57-131 1442-1516(1560)
359 PRK00635 excinuclease ABC subu 99.8 3.8E-19 8.2E-24 165.9 10.7 86 45-130 459-548 (1809)
360 TIGR00956 3a01205 Pleiotropic 99.8 2.5E-19 5.5E-24 165.6 9.1 88 44-131 187-283 (1394)
361 TIGR01271 CFTR_protein cystic 99.8 2.2E-19 4.9E-24 166.7 8.6 72 58-130 1351-1422(1490)
362 PLN03232 ABC transporter C fam 99.8 3E-19 6.5E-24 165.9 9.3 74 56-130 736-810 (1495)
363 PRK00635 excinuclease ABC subu 99.8 5.4E-19 1.2E-23 164.9 10.8 87 44-130 791-882 (1809)
364 COG4107 PhnK ABC-type phosphon 99.8 1.8E-18 3.9E-23 129.9 9.3 86 44-129 133-222 (258)
365 COG0396 sufC Cysteine desulfur 99.8 1.2E-18 2.6E-23 134.4 7.8 125 1-129 85-215 (251)
366 cd03239 ABC_SMC_head The struc 99.8 5.6E-18 1.2E-22 125.9 9.8 70 61-130 95-168 (178)
367 PTZ00243 ABC transporter; Prov 99.8 3.7E-18 8E-23 159.2 10.3 78 54-131 776-853 (1560)
368 TIGR01271 CFTR_protein cystic 99.8 3.3E-18 7.1E-23 159.0 9.8 76 55-131 543-619 (1490)
369 TIGR00957 MRP_assoc_pro multi 99.7 2.8E-18 6E-23 159.7 9.0 77 54-130 754-832 (1522)
370 KOG0061|consensus 99.7 4.4E-18 9.4E-23 146.9 8.6 89 43-131 147-243 (613)
371 PLN03140 ABC transporter G fam 99.7 2.6E-18 5.7E-23 159.3 7.2 89 43-131 313-410 (1470)
372 PLN03130 ABC transporter C fam 99.7 7.1E-18 1.5E-22 157.7 9.5 75 55-130 735-810 (1622)
373 COG0488 Uup ATPase components 99.7 8.3E-18 1.8E-22 143.0 8.8 84 44-130 421-507 (530)
374 COG4618 ArpD ABC-type protease 99.7 9.8E-18 2.1E-22 140.8 8.7 74 58-131 470-543 (580)
375 COG4778 PhnL ABC-type phosphon 99.7 8.9E-18 1.9E-22 125.5 6.3 87 44-130 134-223 (235)
376 COG4167 SapF ABC-type antimicr 99.7 2.7E-17 5.8E-22 124.3 7.8 87 44-130 131-221 (267)
377 COG1101 PhnK ABC-type uncharac 99.7 2.3E-17 4.9E-22 126.7 7.3 78 53-130 141-220 (263)
378 COG4136 ABC-type uncharacteriz 99.7 1.2E-17 2.7E-22 122.7 5.4 86 44-129 117-204 (213)
379 cd03277 ABC_SMC5_euk Eukaryoti 99.7 3E-17 6.5E-22 125.1 7.3 76 54-129 120-202 (213)
380 cd03227 ABC_Class2 ABC-type Cl 99.7 6.1E-17 1.3E-21 118.1 8.6 72 59-130 76-151 (162)
381 COG4133 CcmA ABC-type transpor 99.7 7.3E-17 1.6E-21 121.4 9.1 84 40-123 109-193 (209)
382 cd03241 ABC_RecN RecN ATPase i 99.7 8.5E-17 1.8E-21 126.4 8.4 72 58-130 168-243 (276)
383 TIGR00618 sbcc exonuclease Sbc 99.7 1.9E-16 4.2E-21 143.1 9.6 79 53-131 943-1032(1042)
384 COG1134 TagH ABC-type polysacc 99.7 3.7E-16 8E-21 121.2 8.3 87 44-130 130-218 (249)
385 PHA02562 46 endonuclease subun 99.7 2E-16 4.4E-21 133.8 7.2 74 55-130 463-547 (562)
386 TIGR00634 recN DNA repair prot 99.6 4.1E-16 8.8E-21 133.4 8.7 71 59-130 439-513 (563)
387 COG1245 Predicted ATPase, RNas 99.6 3.8E-16 8.2E-21 130.3 7.7 87 44-130 196-284 (591)
388 KOG0054|consensus 99.6 1.7E-16 3.7E-21 145.5 6.1 78 54-131 637-714 (1381)
389 COG4170 SapD ABC-type antimicr 99.6 3.7E-17 8E-22 126.0 1.1 87 44-130 138-230 (330)
390 COG0178 UvrA Excinuclease ATPa 99.6 7.2E-16 1.6E-20 135.0 8.9 87 44-130 804-895 (935)
391 KOG0062|consensus 99.6 4.9E-16 1.1E-20 130.7 6.6 82 45-129 181-265 (582)
392 PRK03918 chromosome segregatio 99.6 1.4E-15 3.1E-20 134.5 9.3 77 54-130 782-864 (880)
393 COG3845 ABC-type uncharacteriz 99.6 1.7E-15 3.6E-20 126.8 8.1 88 44-131 385-475 (501)
394 KOG0927|consensus 99.6 8E-16 1.7E-20 130.0 6.2 84 44-130 491-577 (614)
395 COG1245 Predicted ATPase, RNas 99.6 1.1E-15 2.5E-20 127.5 6.6 87 44-130 438-527 (591)
396 PRK10869 recombination and rep 99.6 3.6E-15 7.8E-20 127.6 9.2 71 59-130 429-503 (553)
397 KOG0062|consensus 99.6 2.5E-15 5.4E-20 126.4 7.9 82 45-129 465-549 (582)
398 COG5265 ATM1 ABC-type transpor 99.6 1.2E-15 2.5E-20 126.2 5.6 73 57-130 396-468 (497)
399 cd03280 ABC_MutS2 MutS2 homolo 99.6 3.2E-15 6.9E-20 112.3 7.3 76 54-130 85-161 (200)
400 PRK10246 exonuclease subunit S 99.6 6.8E-15 1.5E-19 133.4 9.6 72 54-125 943-1022(1047)
401 TIGR02168 SMC_prok_B chromosom 99.6 4.1E-15 8.9E-20 133.2 7.8 76 54-130 1083-1162(1179)
402 KOG0927|consensus 99.6 5.2E-15 1.1E-19 125.2 7.2 75 54-130 215-290 (614)
403 PRK01156 chromosome segregatio 99.6 1.5E-14 3.2E-19 128.8 9.6 75 56-130 797-880 (895)
404 TIGR00606 rad50 rad50. This fa 99.5 1.7E-14 3.6E-19 133.2 9.1 70 56-125 1195-1275(1311)
405 KOG0054|consensus 99.5 1.2E-14 2.5E-19 133.6 7.9 73 57-130 1272-1344(1381)
406 COG4138 BtuD ABC-type cobalami 99.5 3.4E-15 7.3E-20 112.3 1.7 86 44-129 108-202 (248)
407 KOG0056|consensus 99.5 1E-14 2.3E-19 123.0 4.7 74 56-130 670-743 (790)
408 KOG0065|consensus 99.5 9E-15 2E-19 133.0 3.0 89 42-130 906-1002(1391)
409 TIGR02169 SMC_prok_A chromosom 99.5 1.7E-13 3.7E-18 123.3 8.3 76 54-130 1068-1147(1164)
410 PRK02224 chromosome segregatio 99.4 2.2E-13 4.8E-18 121.0 8.1 76 55-130 776-864 (880)
411 COG0178 UvrA Excinuclease ATPa 99.4 1.3E-12 2.9E-17 114.7 10.0 85 46-130 465-553 (935)
412 KOG0066|consensus 99.4 4E-13 8.7E-18 112.6 5.6 77 46-125 688-766 (807)
413 smart00534 MUTSac ATPase domai 99.4 1.5E-12 3.2E-17 96.9 7.8 82 45-127 45-129 (185)
414 PF00005 ABC_tran: ABC transpo 99.4 4.9E-13 1.1E-17 93.6 4.8 46 44-89 87-137 (137)
415 COG4178 ABC-type uncharacteriz 99.4 9.6E-13 2.1E-17 113.1 7.2 79 45-124 493-578 (604)
416 cd03285 ABC_MSH2_euk MutS2 hom 99.4 1.8E-12 3.9E-17 99.4 7.6 82 45-130 76-163 (222)
417 cd03243 ABC_MutS_homologs The 99.4 2.4E-12 5.3E-17 96.6 7.8 75 54-129 85-160 (202)
418 cd03242 ABC_RecF RecF is a rec 99.3 1.7E-12 3.6E-17 101.8 6.5 65 57-125 180-253 (270)
419 COG0419 SbcC ATPase involved i 99.2 2.8E-11 6.2E-16 108.5 9.3 75 56-130 811-893 (908)
420 TIGR00611 recf recF protein. A 99.2 2.1E-11 4.5E-16 99.8 7.2 63 59-124 274-345 (365)
421 cd03282 ABC_MSH4_euk MutS4 hom 99.2 2.8E-11 6E-16 91.9 6.7 80 45-125 75-156 (204)
422 KOG0066|consensus 99.2 5.6E-12 1.2E-16 105.8 2.8 83 45-130 395-480 (807)
423 PRK00064 recF recombination pr 99.2 3.9E-11 8.5E-16 97.9 7.1 67 56-125 269-344 (361)
424 PF13304 AAA_21: AAA domain; P 99.2 1.9E-10 4.2E-15 84.2 8.9 69 55-123 231-302 (303)
425 PF02463 SMC_N: RecF/RecN/SMC 99.2 2E-10 4.3E-15 86.7 8.9 71 59-130 135-209 (220)
426 PRK00409 recombination and DNA 99.1 1.2E-10 2.6E-15 103.4 7.2 74 54-128 384-459 (782)
427 TIGR02680 conserved hypothetic 99.1 1.2E-10 2.7E-15 108.1 7.6 64 54-120 1241-1316(1353)
428 COG4615 PvdE ABC-type sideroph 99.1 2.1E-10 4.6E-15 95.1 7.9 74 57-130 445-519 (546)
429 cd03283 ABC_MutS-like MutS-lik 99.1 5.2E-10 1.1E-14 84.4 8.7 63 64-126 89-154 (199)
430 KOG0060|consensus 99.1 3.5E-10 7.6E-15 96.8 7.4 67 56-125 566-632 (659)
431 KOG2355|consensus 99.0 2.4E-10 5.2E-15 88.0 4.9 80 44-124 132-212 (291)
432 cd03281 ABC_MSH5_euk MutS5 hom 99.0 1.1E-09 2.4E-14 83.4 8.0 69 57-125 85-159 (213)
433 COG2401 ABC-type ATPase fused 99.0 7.4E-10 1.6E-14 92.4 7.0 88 43-130 487-580 (593)
434 KOG0063|consensus 99.0 5.2E-10 1.1E-14 93.5 5.1 85 45-129 197-283 (592)
435 cd01124 KaiC KaiC is a circadi 99.0 9.7E-10 2.1E-14 80.3 5.9 69 54-122 65-142 (187)
436 TIGR01069 mutS2 MutS2 family p 99.0 1.5E-09 3.3E-14 96.3 7.4 69 55-124 380-449 (771)
437 cd03284 ABC_MutS1 MutS1 homolo 98.9 2.7E-09 5.8E-14 81.5 5.5 69 59-129 84-162 (216)
438 KOG0063|consensus 98.9 1.6E-09 3.5E-14 90.6 3.4 77 54-130 450-528 (592)
439 KOG0065|consensus 98.8 4.5E-09 9.8E-14 96.5 3.9 89 42-130 236-333 (1391)
440 KOG0064|consensus 98.8 7E-09 1.5E-13 88.6 4.4 64 58-124 610-673 (728)
441 PRK14079 recF recombination pr 98.7 1.9E-08 4.1E-13 81.9 5.8 48 59-106 262-318 (349)
442 PF13558 SbcCD_C: Putative exo 98.7 3.4E-08 7.4E-13 65.9 5.9 51 55-105 27-90 (90)
443 PTZ00132 GTP-binding nuclear p 98.7 3.1E-08 6.6E-13 74.5 5.0 43 65-107 157-204 (215)
444 cd03286 ABC_MSH6_euk MutS6 hom 98.6 2.1E-07 4.6E-12 71.4 8.0 67 59-125 88-158 (218)
445 PRK13695 putative NTPase; Prov 98.5 2.1E-07 4.6E-12 68.1 6.0 71 55-129 73-145 (174)
446 cd03287 ABC_MSH3_euk MutS3 hom 98.4 1E-06 2.2E-11 67.8 8.2 68 58-125 88-159 (222)
447 PRK13830 conjugal transfer pro 98.4 8.2E-07 1.8E-11 79.5 7.1 49 76-124 650-699 (818)
448 PF13175 AAA_15: AAA ATPase do 98.3 1.8E-06 3.9E-11 69.8 7.5 68 55-122 336-414 (415)
449 PRK13891 conjugal transfer pro 98.3 2.2E-06 4.8E-11 77.0 7.6 55 71-125 680-735 (852)
450 COG1196 Smc Chromosome segrega 98.3 1.7E-06 3.8E-11 79.8 6.6 74 55-129 1061-1138(1163)
451 TIGR03185 DNA_S_dndD DNA sulfu 98.2 4.6E-06 9.9E-11 72.9 7.1 65 56-124 547-618 (650)
452 PRK06067 flagellar accessory p 98.1 9E-06 2E-10 62.1 6.8 63 60-122 100-167 (234)
453 cd01128 rho_factor Transcripti 98.1 9.1E-07 2E-11 69.2 1.2 69 58-130 127-204 (249)
454 PRK08533 flagellar accessory p 98.1 1.2E-05 2.6E-10 61.9 7.0 62 60-122 95-164 (230)
455 COG4637 Predicted ATPase [Gene 98.0 2.4E-05 5.2E-10 63.6 7.6 66 59-125 269-336 (373)
456 KOG0964|consensus 98.0 4.3E-06 9.3E-11 75.2 3.3 72 57-129 1094-1169(1200)
457 PF13166 AAA_13: AAA domain 98.0 5E-05 1.1E-09 66.4 9.6 70 56-125 496-576 (712)
458 COG3910 Predicted ATPase [Gene 98.0 1.8E-05 3.9E-10 60.4 5.5 68 55-123 124-191 (233)
459 cd01120 RecA-like_NTPases RecA 97.9 7.8E-05 1.7E-09 52.1 7.4 63 60-122 67-139 (165)
460 PRK13873 conjugal transfer ATP 97.8 4.3E-05 9.3E-10 68.4 7.0 52 74-125 631-683 (811)
461 TIGR02858 spore_III_AA stage I 97.8 6.8E-05 1.5E-09 59.4 7.2 55 61-122 177-231 (270)
462 cd01125 repA Hexameric Replica 97.8 1.8E-05 3.9E-10 60.8 2.8 47 74-121 107-160 (239)
463 PRK05399 DNA mismatch repair p 97.7 0.00022 4.8E-09 64.4 8.7 72 55-128 661-738 (854)
464 PRK13898 type IV secretion sys 97.7 0.00014 3E-09 65.0 7.3 52 74-125 638-690 (800)
465 KOG0962|consensus 97.4 0.00033 7.1E-09 65.1 6.1 66 60-125 1183-1259(1294)
466 KOG0933|consensus 97.3 0.00015 3.2E-09 65.8 3.0 75 54-129 1076-1154(1174)
467 COG0497 RecN ATPase involved i 97.3 0.0014 3.1E-08 56.6 8.3 69 58-127 429-501 (557)
468 TIGR02655 circ_KaiC circadian 97.3 2.3E-05 4.9E-10 66.4 -2.7 59 54-122 109-169 (484)
469 cd01131 PilT Pilus retraction 97.2 0.00081 1.8E-08 50.4 5.3 54 70-130 66-119 (198)
470 KOG0996|consensus 97.1 0.0004 8.7E-09 63.8 3.5 73 56-129 1191-1267(1293)
471 PRK08699 DNA polymerase III su 97.0 0.001 2.2E-08 53.9 4.9 42 82-124 116-157 (325)
472 TIGR00152 dephospho-CoA kinase 97.0 0.00016 3.5E-09 53.5 -0.1 67 63-131 60-129 (188)
473 PF00488 MutS_V: MutS domain V 96.8 0.016 3.4E-07 44.9 9.6 71 55-125 97-171 (235)
474 KOG0018|consensus 96.7 0.0022 4.8E-08 58.7 4.6 71 55-128 1046-1120(1141)
475 TIGR02788 VirB11 P-type DNA tr 96.5 0.0044 9.5E-08 49.6 4.9 56 68-130 208-263 (308)
476 PRK06793 fliI flagellum-specif 96.5 0.0043 9.4E-08 52.3 4.8 67 58-126 219-292 (432)
477 COG4694 Uncharacterized protei 96.3 0.014 3.1E-07 50.7 7.1 71 54-124 522-601 (758)
478 PRK14088 dnaA chromosomal repl 96.1 0.013 2.8E-07 49.3 5.8 49 77-125 193-243 (440)
479 PF13514 AAA_27: AAA domain 96.0 0.016 3.5E-07 53.8 6.4 70 55-125 1020-1097(1111)
480 COG1195 RecF Recombinational D 96.0 0.017 3.7E-07 47.8 5.9 63 58-124 273-344 (363)
481 TIGR01420 pilT_fam pilus retra 96.0 0.013 2.7E-07 47.7 5.1 54 69-129 186-239 (343)
482 TIGR01070 mutS1 DNA mismatch r 96.0 0.041 8.9E-07 50.0 8.6 70 56-125 647-720 (840)
483 smart00382 AAA ATPases associa 96.0 0.12 2.5E-06 34.1 8.9 63 57-119 57-125 (148)
484 TIGR03880 KaiC_arch_3 KaiC dom 95.6 0.021 4.5E-07 43.2 4.3 53 77-130 106-174 (224)
485 PRK07721 fliI flagellum-specif 95.5 0.025 5.5E-07 47.7 5.0 71 59-130 222-325 (438)
486 PRK06893 DNA replication initi 95.2 0.048 1E-06 41.7 5.2 45 76-120 89-134 (229)
487 cd00561 CobA_CobO_BtuR ATP:cor 94.8 0.067 1.5E-06 39.3 5.0 64 66-130 81-150 (159)
488 COG4938 Uncharacterized conser 94.2 0.086 1.9E-06 42.8 4.6 47 77-123 259-305 (374)
489 PF09818 ABC_ATPase: Predicted 94.2 0.13 2.9E-06 43.5 5.9 73 58-130 320-409 (448)
490 TIGR00929 VirB4_CagE type IV s 94.1 0.16 3.4E-06 45.1 6.6 49 76-124 627-676 (785)
491 PRK04296 thymidine kinase; Pro 94.0 0.21 4.6E-06 37.1 6.3 39 77-119 77-115 (190)
492 cd00009 AAA The AAA+ (ATPases 94.0 0.2 4.3E-06 33.4 5.6 54 67-121 73-131 (151)
493 COG3593 Predicted ATP-dependen 93.9 0.091 2E-06 45.9 4.5 61 66-127 285-349 (581)
494 PTZ00454 26S protease regulato 93.8 0.19 4.2E-06 41.9 6.3 55 70-124 230-298 (398)
495 PRK04863 mukB cell division pr 93.5 0.057 1.2E-06 51.8 2.8 56 58-117 1363-1435(1486)
496 PRK00454 engB GTP-binding prot 93.0 0.16 3.4E-06 36.8 4.0 60 46-109 131-195 (196)
497 PRK09302 circadian clock prote 93.0 0.093 2E-06 44.7 3.1 45 77-121 129-178 (509)
498 COG1106 Predicted ATPases [Gen 92.3 0.51 1.1E-05 39.2 6.5 70 55-124 246-317 (371)
499 PRK14087 dnaA chromosomal repl 92.2 0.61 1.3E-05 39.4 7.0 52 70-121 198-250 (450)
500 cd01122 GP4d_helicase GP4d_hel 91.9 0.29 6.2E-06 37.8 4.4 55 66-120 126-191 (271)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=3.5e-33 Score=213.06 Aligned_cols=88 Identities=34% Similarity=0.557 Sum_probs=84.7
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+|+.+ .+.+|.+|||||||||+|||||+.+|+++++|||||+|||+...++.+.+++++++|.|.++|||+|.+
T Consensus 119 ~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F 198 (240)
T COG1126 119 ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF 198 (240)
T ss_pred HHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH
Confidence 6889999964 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
+.+ ||||+|
T Consensus 199 Ar~VadrviF 208 (240)
T COG1126 199 AREVADRVIF 208 (240)
T ss_pred HHHhhheEEE
Confidence 998 999986
No 2
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.8e-31 Score=202.46 Aligned_cols=123 Identities=31% Similarity=0.410 Sum_probs=102.1
Q ss_pred CCCCCCcccceeeeehhhhhcccchhhccCCCCCCCCCCCc---HHHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHh
Q psy4761 1 MVYQPPEKFQVVSVGLYFRWKGSHLRELFHPTTVPIPSVYF---PWYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMM 76 (131)
Q Consensus 1 ~v~Q~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~ 76 (131)
||||||+. |.+..-. .....|+++|.+++...+ .+..++.+++. ..++++.+|||||||||+||.+|+
T Consensus 83 ~VfQnpd~-q~~~~tV-------~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa 154 (235)
T COG1122 83 LVFQNPDD-QLFGPTV-------EDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA 154 (235)
T ss_pred EEEECccc-ccccCcH-------HHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHH
Confidence 58999985 2221111 122368888888887432 33578888995 589999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChhHHhc-CCcccC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIEEARH-AHKVPI 131 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~~~~~-~dri~~ 131 (131)
.+|++|||||||+|||+..++.+++.++++.++ |.|+|++|||++.+.. |||+++
T Consensus 155 ~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~v 211 (235)
T COG1122 155 MGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVV 211 (235)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEE
Confidence 999999999999999999999999999999866 7999999999999988 999863
No 3
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3e-30 Score=199.97 Aligned_cols=88 Identities=33% Similarity=0.463 Sum_probs=82.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
.+++.+||. ..+++|++|||||||||+|||||+.+|++|+||||+++||..++..+.+.+.++. +.+.||++||||++
T Consensus 113 ~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 113 ELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred HHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 688999996 5899999999999999999999999999999999999999999999999999987 45899999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
|+-. +|||++
T Consensus 193 EAv~LsdRivv 203 (248)
T COG1116 193 EAVYLADRVVV 203 (248)
T ss_pred HHHhhhCEEEE
Confidence 9998 999874
No 4
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.7e-30 Score=206.74 Aligned_cols=88 Identities=31% Similarity=0.564 Sum_probs=83.3
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
++++++|+++ .+++|.+|||||||||+|||||+.+|++|++|||||+|||...+.+.+.|+++.+ -|.||++|||.|+
T Consensus 124 elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~ 203 (339)
T COG1135 124 ELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME 203 (339)
T ss_pred HHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 6899999975 7999999999999999999999999999999999999999999999999999975 5999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
.+++ |||+++
T Consensus 204 Vvk~ic~rVav 214 (339)
T COG1135 204 VVKRICDRVAV 214 (339)
T ss_pred HHHHHhhhheE
Confidence 9999 999863
No 5
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.6e-30 Score=199.80 Aligned_cols=90 Identities=31% Similarity=0.478 Sum_probs=84.3
Q ss_pred HHHHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEc
Q psy4761 42 PWYISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118 (131)
Q Consensus 42 ~~~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH 118 (131)
.+++++.+|++. .+++|.+|||||+||++|||||+.+|++||+|||||+||...+.++++++.++++ .|.|+|+|||
T Consensus 121 i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsH 200 (252)
T COG1124 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH 200 (252)
T ss_pred HHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeC
Confidence 457899999963 7999999999999999999999999999999999999999999999999999985 4899999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
|+..+.+ ||||++
T Consensus 201 dl~~v~~~cdRi~V 214 (252)
T COG1124 201 DLALVEHMCDRIAV 214 (252)
T ss_pred cHHHHHHHhhheee
Confidence 9999999 999864
No 6
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.9e-30 Score=200.58 Aligned_cols=88 Identities=28% Similarity=0.388 Sum_probs=83.3
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.++++.+|+. ..++++++|||||+||+.|||||+.+|++|+|||||+|+|+..+..++++|++++++|+||++||||++
T Consensus 121 ~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~ 200 (254)
T COG1121 121 DEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence 3688999995 589999999999999999999999999999999999999999999999999999977999999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
.+.. +|+|+
T Consensus 201 ~v~~~~D~vi 210 (254)
T COG1121 201 LVMAYFDRVI 210 (254)
T ss_pred HhHhhCCEEE
Confidence 9987 99986
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=8.5e-30 Score=195.95 Aligned_cols=87 Identities=32% Similarity=0.479 Sum_probs=81.2
Q ss_pred HHHHhcCCC-CC-CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 44 YISLLNGLP-DP-NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~-~~-~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
.+++.+|+. .. +++|.+|||||||||+|||||+++|++|+.||||.+||..+.+.++++++++.+ .|+|||+||||.
T Consensus 124 ~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 124 ELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred HHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 678888996 44 488999999999999999999999999999999999999999999999999975 499999999999
Q ss_pred hHHhcCCccc
Q psy4761 121 EEARHAHKVP 130 (131)
Q Consensus 121 ~~~~~~dri~ 130 (131)
+.+..|||++
T Consensus 204 ~lA~~~dr~i 213 (226)
T COG1136 204 ELAKYADRVI 213 (226)
T ss_pred HHHHhCCEEE
Confidence 9999999985
No 8
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=1.2e-28 Score=195.72 Aligned_cols=89 Identities=45% Similarity=0.726 Sum_probs=83.3
Q ss_pred HHHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCC-cEEEEEEcCh
Q psy4761 43 WYISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG-VTCIITTHYI 120 (131)
Q Consensus 43 ~~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g-~tvi~vtH~~ 120 (131)
.++++.++++. .++++++||+|||||++||+||+++|+++||||||+||||..+..++++|++++++| +||+++||.+
T Consensus 118 ~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l 197 (293)
T COG1131 118 EELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL 197 (293)
T ss_pred HHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH
Confidence 36889999964 678899999999999999999999999999999999999999999999999999776 8999999999
Q ss_pred hHHhc-CCcccC
Q psy4761 121 EEARH-AHKVPI 131 (131)
Q Consensus 121 ~~~~~-~dri~~ 131 (131)
++++. ||||+|
T Consensus 198 ~e~~~~~d~v~i 209 (293)
T COG1131 198 EEAEELCDRVII 209 (293)
T ss_pred HHHHHhCCEEEE
Confidence 99998 999875
No 9
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=1.5e-28 Score=189.94 Aligned_cols=88 Identities=34% Similarity=0.557 Sum_probs=81.8
Q ss_pred HHHHhcCCC-C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcCh
Q psy4761 44 YISLLNGLP-D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~ 120 (131)
+-++.+|++ . .+.+|++|||||++|+++|||++.+|+++++||||+||||.+...+-++|+++++. |.|+++||||+
T Consensus 127 ~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl 206 (263)
T COG1127 127 MKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL 206 (263)
T ss_pred HHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh
Confidence 346888995 4 78999999999999999999999999999999999999999999999999999865 99999999999
Q ss_pred hHHhc-CCcccC
Q psy4761 121 EEARH-AHKVPI 131 (131)
Q Consensus 121 ~~~~~-~dri~~ 131 (131)
+.+.. |||+++
T Consensus 207 ~s~~~i~Drv~~ 218 (263)
T COG1127 207 DSLLTIADRVAV 218 (263)
T ss_pred HHHHhhhceEEE
Confidence 99998 899874
No 10
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.4e-29 Score=189.39 Aligned_cols=77 Identities=30% Similarity=0.467 Sum_probs=72.4
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc-CCcccC
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH-AHKVPI 131 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~-~dri~~ 131 (131)
.++.+..||||||||++||||++.+|++|+||||||+|||.+..++-++|.+++ +.-||++|||+|..+.+ +|+.+|
T Consensus 143 L~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taF 220 (253)
T COG1117 143 LHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAF 220 (253)
T ss_pred hhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhh
Confidence 678889999999999999999999999999999999999999999999999997 46899999999999998 888765
No 11
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.95 E-value=1.3e-27 Score=186.88 Aligned_cols=88 Identities=27% Similarity=0.407 Sum_probs=82.1
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
+.++.+++. ..++++.+||||||||+.|||||+.+|++|+|||||++||...+.++++.++++. ++|.|||+|+||++
T Consensus 121 ~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN 200 (258)
T COG1120 121 EALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN 200 (258)
T ss_pred HHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 468888995 5889999999999999999999999999999999999999999999999999998 56999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
.+.+ ||++++
T Consensus 201 ~A~ryad~~i~ 211 (258)
T COG1120 201 LAARYADHLIL 211 (258)
T ss_pred HHHHhCCEEEE
Confidence 9988 999863
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=5.4e-28 Score=188.69 Aligned_cols=90 Identities=31% Similarity=0.506 Sum_probs=83.9
Q ss_pred HHHHHHhcCCC---CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEE
Q psy4761 42 PWYISLLNGLP---DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITT 117 (131)
Q Consensus 42 ~~~~~~~~~l~---~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vt 117 (131)
..++++++||+ +.+++|++|||||||||.+||||+.+|++++||||+++|||..+.++.+.+.++.+ -|+|||+||
T Consensus 114 ~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVT 193 (309)
T COG1125 114 ADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVT 193 (309)
T ss_pred HHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEe
Confidence 34789999994 47999999999999999999999999999999999999999999999999999975 499999999
Q ss_pred cChhHHhc-CCcccC
Q psy4761 118 HYIEEARH-AHKVPI 131 (131)
Q Consensus 118 H~~~~~~~-~dri~~ 131 (131)
||++++.. +|||++
T Consensus 194 HDidEA~kLadri~v 208 (309)
T COG1125 194 HDIDEALKLADRIAV 208 (309)
T ss_pred cCHHHHHhhhceEEE
Confidence 99999998 999974
No 13
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.94 E-value=6.6e-28 Score=194.71 Aligned_cols=122 Identities=27% Similarity=0.337 Sum_probs=99.3
Q ss_pred CCCCCCcccceeeeehhhhhcccchhhccCCCCCCCCCCCcHH---HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHh
Q psy4761 1 MVYQPPEKFQVVSVGLYFRWKGSHLRELFHPTTVPIPSVYFPW---YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMM 76 (131)
Q Consensus 1 ~v~Q~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~ 76 (131)
||||++.. |++.+..++.. |+....++++..+.| +..+.+++. ..+++|.+|||||||||++|||++
T Consensus 79 mVFQ~yAL--------yPhmtV~~Nia-f~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlV 149 (338)
T COG3839 79 MVFQNYAL--------YPHMTVYENIA-FGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALV 149 (338)
T ss_pred EEeCCccc--------cCCCcHHHHhh-hhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHh
Confidence 68999986 45544333333 444333344433333 577888885 589999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChhHHhc-CCcccC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIEEARH-AHKVPI 131 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~~~~~-~dri~~ 131 (131)
++|++++||||+|+||...+..+...|+++.++ |.|+|+||||..++.. +|||++
T Consensus 150 r~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~V 206 (338)
T COG3839 150 RKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVV 206 (338)
T ss_pred cCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEE
Confidence 999999999999999999999999999998754 9999999999999998 999974
No 14
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3e-28 Score=187.90 Aligned_cols=126 Identities=24% Similarity=0.366 Sum_probs=99.6
Q ss_pred CCCCCCcc------cceeeeehhhhhcccchhhccCCCCCCCCCCCcHHHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHH
Q psy4761 1 MVYQPPEK------FQVVSVGLYFRWKGSHLRELFHPTTVPIPSVYFPWYISLLNGLP-DPNSLCGQVSGGQQRRISVAV 73 (131)
Q Consensus 1 ~v~Q~p~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iar 73 (131)
|+||.|.. ++||..|...+++ ..+.+|+.- ........-.+++.+|+. .+.+++++|||||||||+|||
T Consensus 85 mIfQ~~nLv~r~sv~~NVl~grl~~~s--~~~slfglf--sk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 85 MIFQQFNLVPRLSVLENVLLGRLGYTS--TWRSLFGLF--SKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred eEeccCCcccccHHHHHHHhhhcccch--HHHHHhCCC--CHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence 67999854 5777777665542 223333210 000112223578999994 578899999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChhHHhc-CCccc
Q psy4761 74 TMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIEEARH-AHKVP 130 (131)
Q Consensus 74 al~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~~~~~-~dri~ 130 (131)
||+.+|++|+.|||+++|||.+.+.+++.|++++ ++|.|||++-|+++.+.+ ||||+
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Rii 219 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRII 219 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhhe
Confidence 9999999999999999999999999999999997 569999999999999987 99985
No 15
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=1.8e-27 Score=190.21 Aligned_cols=88 Identities=31% Similarity=0.469 Sum_probs=82.6
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
+.++.+||. ..+++|++|||||||||.+||||+.+|+||++|||+|+|||--+.++.+.|.++.++ ++||+|+|||++
T Consensus 147 ~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd 226 (386)
T COG4175 147 EALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD 226 (386)
T ss_pred HHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 578999996 589999999999999999999999999999999999999999999999999999754 899999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.+ .|||+|
T Consensus 227 EAlriG~rIai 237 (386)
T COG4175 227 EALRIGDRIAI 237 (386)
T ss_pred HHHhccceEEE
Confidence 9998 999975
No 16
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.94 E-value=3.2e-27 Score=177.68 Aligned_cols=84 Identities=32% Similarity=0.520 Sum_probs=79.4
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+.++.+||. ..+..|.+||||||||++||||++++|++||.||||.+|||.....+++++.++...|.||++.|||.+.
T Consensus 120 ~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l 199 (223)
T COG2884 120 EVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL 199 (223)
T ss_pred HHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH
Confidence 578999995 4788999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HhcCC
Q psy4761 123 ARHAH 127 (131)
Q Consensus 123 ~~~~d 127 (131)
+.++.
T Consensus 200 v~~~~ 204 (223)
T COG2884 200 VNRMR 204 (223)
T ss_pred HHhcc
Confidence 98843
No 17
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.94 E-value=6.2e-28 Score=183.09 Aligned_cols=89 Identities=26% Similarity=0.446 Sum_probs=83.6
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
..+.+.+++. ..|+++.+||.||||||+||||++++|++++|||||+|||....+.+.+++..++++|++||++||.|+
T Consensus 115 ~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~ 194 (245)
T COG4555 115 AELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ 194 (245)
T ss_pred HHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH
Confidence 3578888984 589999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
+++. |||+++
T Consensus 195 EvealCDrviv 205 (245)
T COG4555 195 EVEALCDRVIV 205 (245)
T ss_pred HHHHhhheEEE
Confidence 9997 999874
No 18
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.94 E-value=4.3e-27 Score=191.74 Aligned_cols=88 Identities=33% Similarity=0.434 Sum_probs=81.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC--CcEEEEEEcCh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT--GVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~--g~tvi~vtH~~ 120 (131)
++++.+++. ..++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++ |.|+|+||||+
T Consensus 120 ~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~ 199 (362)
T TIGR03258 120 DALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ 199 (362)
T ss_pred HHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 578889996 478999999999999999999999999999999999999999999999999998765 89999999999
Q ss_pred hHHhc-CCcccC
Q psy4761 121 EEARH-AHKVPI 131 (131)
Q Consensus 121 ~~~~~-~dri~~ 131 (131)
+++.. ||||++
T Consensus 200 ~ea~~l~dri~v 211 (362)
T TIGR03258 200 DDALTLADKAGI 211 (362)
T ss_pred HHHHHhCCEEEE
Confidence 99987 999864
No 19
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.8e-27 Score=190.51 Aligned_cols=88 Identities=23% Similarity=0.345 Sum_probs=81.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.++ |.|+|+||||++
T Consensus 117 ~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 196 (356)
T PRK11650 117 EAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV 196 (356)
T ss_pred HHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 578889995 479999999999999999999999999999999999999999999999999998754 999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 197 ea~~l~D~i~v 207 (356)
T PRK11650 197 EAMTLADRVVV 207 (356)
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 20
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.94 E-value=2e-26 Score=173.96 Aligned_cols=87 Identities=33% Similarity=0.523 Sum_probs=80.9
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++|.|||++||++++
T Consensus 121 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 200 (216)
T TIGR00960 121 AALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL 200 (216)
T ss_pred HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 577888985 4788999999999999999999999999999999999999999999999999987678999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+++
T Consensus 201 ~~~~~d~i~ 209 (216)
T TIGR00960 201 VETYRHRTL 209 (216)
T ss_pred HHHhCCEEE
Confidence 987 99986
No 21
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=3.6e-26 Score=171.53 Aligned_cols=89 Identities=29% Similarity=0.343 Sum_probs=82.1
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
..+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|++++++|.|||++||+++
T Consensus 108 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 187 (205)
T cd03226 108 ETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE 187 (205)
T ss_pred HHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3578889995 478899999999999999999999999999999999999999999999999998777999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||++++
T Consensus 188 ~~~~~~d~i~~ 198 (205)
T cd03226 188 FLAKVCDRVLL 198 (205)
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 22
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.94 E-value=2.1e-26 Score=183.57 Aligned_cols=88 Identities=36% Similarity=0.698 Sum_probs=82.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++++||+|||||++||+||+++|++|||||||+|||+.++..+++.|++++++|.|||++||++++
T Consensus 121 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e 200 (306)
T PRK13537 121 PLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEE 200 (306)
T ss_pred HHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 577888995 4789999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
++. ||||++
T Consensus 201 ~~~~~d~i~i 210 (306)
T PRK13537 201 AERLCDRLCV 210 (306)
T ss_pred HHHhCCEEEE
Confidence 987 999864
No 23
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=3e-26 Score=172.30 Aligned_cols=88 Identities=36% Similarity=0.472 Sum_probs=81.4
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|++++++|.|||++||++++
T Consensus 117 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~ 196 (211)
T cd03225 117 EALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDL 196 (211)
T ss_pred HHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 467888885 4688999999999999999999999999999999999999999999999999998679999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
+.. ||+|++
T Consensus 197 ~~~~~d~i~~ 206 (211)
T cd03225 197 LLELADRVIV 206 (211)
T ss_pred HHHhCCEEEE
Confidence 988 999863
No 24
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.93 E-value=1.2e-26 Score=189.16 Aligned_cols=88 Identities=32% Similarity=0.497 Sum_probs=81.7
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
++++.++++ ..++++.+||||||||++|||||+.+|++|||||||++||+..++.+.+.+.++.+ .|+|||+||||++
T Consensus 112 ~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 112 ELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD 191 (363)
T ss_pred HHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 578899996 47999999999999999999999999999999999999999999999999999975 4899999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 192 ea~~~~drI~v 202 (363)
T TIGR01186 192 EAIRIGDRIVI 202 (363)
T ss_pred HHHHhCCEEEE
Confidence 9877 999864
No 25
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-26 Score=187.87 Aligned_cols=88 Identities=28% Similarity=0.435 Sum_probs=81.6
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|+++.++ |.|+|+||||.+
T Consensus 119 ~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 198 (351)
T PRK11432 119 EALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS 198 (351)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 578888995 478999999999999999999999999999999999999999999999999999754 999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 199 e~~~laD~i~v 209 (351)
T PRK11432 199 EAFAVSDTVIV 209 (351)
T ss_pred HHHHhCCEEEE
Confidence 9987 999864
No 26
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.93 E-value=1.5e-26 Score=173.69 Aligned_cols=87 Identities=30% Similarity=0.495 Sum_probs=80.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+++++++|.|||++||++++
T Consensus 109 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 188 (208)
T cd03268 109 EVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSE 188 (208)
T ss_pred HHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 577888885 4688899999999999999999999999999999999999999999999999987778999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+++
T Consensus 189 ~~~~~d~v~ 197 (208)
T cd03268 189 IQKVADRIG 197 (208)
T ss_pred HHHhcCEEE
Confidence 987 99875
No 27
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.93 E-value=3.9e-26 Score=172.06 Aligned_cols=87 Identities=34% Similarity=0.523 Sum_probs=80.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.++++ ..++++.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|++++++|.|||++||++++
T Consensus 115 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~ 194 (213)
T cd03235 115 EALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL 194 (213)
T ss_pred HHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 577888885 4788999999999999999999999999999999999999999999999999987778999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+++
T Consensus 195 ~~~~~d~i~ 203 (213)
T cd03235 195 VLEYFDRVL 203 (213)
T ss_pred HHHhcCEEE
Confidence 987 99985
No 28
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.93 E-value=3.6e-26 Score=181.48 Aligned_cols=88 Identities=41% Similarity=0.727 Sum_probs=82.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++++||||||||++||+||+++|++|||||||+|||+..++.+++.|++++++|.|||++||++++
T Consensus 107 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~ 186 (302)
T TIGR01188 107 ELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEE 186 (302)
T ss_pred HHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 578889996 4789999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
+.. ||||++
T Consensus 187 ~~~~~d~v~~ 196 (302)
T TIGR01188 187 ADKLCDRIAI 196 (302)
T ss_pred HHHhCCEEEE
Confidence 987 999863
No 29
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.93 E-value=5e-26 Score=171.37 Aligned_cols=88 Identities=36% Similarity=0.552 Sum_probs=81.4
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
+.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++|.|||++||+++
T Consensus 119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 198 (214)
T TIGR02673 119 GAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198 (214)
T ss_pred HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3577888885 468889999999999999999999999999999999999999999999999998777899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+++
T Consensus 199 ~~~~~~d~i~ 208 (214)
T TIGR02673 199 LVDRVAHRVI 208 (214)
T ss_pred HHHHhcCEEE
Confidence 9987 99985
No 30
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.93 E-value=1.9e-26 Score=187.33 Aligned_cols=88 Identities=40% Similarity=0.601 Sum_probs=81.9
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||++||+..+..+.+.|+++.++ |.|+|+||||++
T Consensus 117 ~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 117 ELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196 (353)
T ss_pred HHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 678999996 478999999999999999999999999999999999999999999999999998754 999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 197 ea~~l~d~i~v 207 (353)
T TIGR03265 197 EALSMADRIVV 207 (353)
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 31
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=1.3e-26 Score=188.07 Aligned_cols=88 Identities=32% Similarity=0.495 Sum_probs=82.4
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
++++.++++ ..++++.+|||||||||++||||+.+|++|+||||.++||...++.+...++++. +.|.|.|+||||.+
T Consensus 119 e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 119 EALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred HHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 578999995 5899999999999999999999999999999999999999999999999999987 45999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. +|||++
T Consensus 199 EAl~msDrI~V 209 (352)
T COG3842 199 EALAMSDRIAV 209 (352)
T ss_pred HHhhhccceEE
Confidence 9998 999974
No 32
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.6e-26 Score=183.99 Aligned_cols=88 Identities=34% Similarity=0.502 Sum_probs=82.6
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
++++.+.+.. .+++|.+|||||||||++||||+.+|++|+||||+++||...+..+...|+++.++ |.|.++||||.+
T Consensus 120 elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e 199 (345)
T COG1118 120 ELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE 199 (345)
T ss_pred HHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH
Confidence 6788888864 79999999999999999999999999999999999999999999999999999865 999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.+ ||||++
T Consensus 200 ea~~ladrvvv 210 (345)
T COG1118 200 EALELADRVVV 210 (345)
T ss_pred HHHhhcceEEE
Confidence 9988 999863
No 33
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5.1e-26 Score=171.40 Aligned_cols=87 Identities=36% Similarity=0.520 Sum_probs=80.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ .|.|||++||+++
T Consensus 113 ~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 192 (213)
T cd03259 113 ELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192 (213)
T ss_pred HHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 577888885 47889999999999999999999999999999999999999999999999999875 4899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 193 ~~~~~~d~v~ 202 (213)
T cd03259 193 EALALADRIA 202 (213)
T ss_pred HHHHhcCEEE
Confidence 9877 99985
No 34
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.93 E-value=1.3e-26 Score=195.78 Aligned_cols=88 Identities=32% Similarity=0.533 Sum_probs=82.9
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcCh
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~ 120 (131)
++++..+++. .+++|.+||||||||++|||||+.+|++||+|||||.||+..+..+.+.|+++.++ |.|.++||||+
T Consensus 411 ~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl 490 (539)
T COG1123 411 ELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL 490 (539)
T ss_pred HHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH
Confidence 5789999963 79999999999999999999999999999999999999999999999999999854 99999999999
Q ss_pred hHHhc-CCcccC
Q psy4761 121 EEARH-AHKVPI 131 (131)
Q Consensus 121 ~~~~~-~dri~~ 131 (131)
..+++ ||||++
T Consensus 491 ~vV~~i~drv~v 502 (539)
T COG1123 491 AVVRYIADRVAV 502 (539)
T ss_pred HHHHhhCceEEE
Confidence 99999 999863
No 35
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.93 E-value=3.1e-26 Score=186.04 Aligned_cols=88 Identities=31% Similarity=0.458 Sum_probs=81.9
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.++++ ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++.++ |.|+|+||||++
T Consensus 119 ~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ 198 (353)
T PRK10851 119 QLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE 198 (353)
T ss_pred HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 578888995 478999999999999999999999999999999999999999999999999999765 899999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 199 ea~~~~Dri~v 209 (353)
T PRK10851 199 EAMEVADRVVV 209 (353)
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 36
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.7e-26 Score=182.35 Aligned_cols=88 Identities=33% Similarity=0.523 Sum_probs=82.5
Q ss_pred HHHHhcCCCC----CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEc
Q psy4761 44 YISLLNGLPD----PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~----~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH 118 (131)
++++.++++. .+.+|.+|||||+|||.||.|++.+|++||.||||++||...+.++.++|+++++ .|.|+|+|||
T Consensus 133 ~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITH 212 (316)
T COG0444 133 ELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITH 212 (316)
T ss_pred HHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 6889999974 4899999999999999999999999999999999999999999999999999985 6999999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
|+..+.+ ||||++
T Consensus 213 Dl~vva~~aDri~V 226 (316)
T COG0444 213 DLGVVAEIADRVAV 226 (316)
T ss_pred CHHHHHHhcceEEE
Confidence 9999988 999864
No 37
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=7.1e-26 Score=173.06 Aligned_cols=87 Identities=34% Similarity=0.524 Sum_probs=80.5
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||+++
T Consensus 119 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~ 198 (235)
T cd03261 119 EKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD 198 (235)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 467888985 46889999999999999999999999999999999999999999999999999876 4899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 199 ~~~~~~d~v~ 208 (235)
T cd03261 199 TAFAIADRIA 208 (235)
T ss_pred HHHHhcCEEE
Confidence 9987 99986
No 38
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.93 E-value=7.3e-26 Score=183.09 Aligned_cols=88 Identities=39% Similarity=0.705 Sum_probs=82.4
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.++++. .++++++||+|||||++||+||+++|+++||||||+|||+..+..+++.|++++++|.|||++||++++
T Consensus 155 ~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e 234 (340)
T PRK13536 155 SLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 234 (340)
T ss_pred HHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 5678889964 789999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
++. ||||++
T Consensus 235 ~~~~~d~i~i 244 (340)
T PRK13536 235 AERLCDRLCV 244 (340)
T ss_pred HHHhCCEEEE
Confidence 987 999864
No 39
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.93 E-value=3.9e-26 Score=186.87 Aligned_cols=88 Identities=28% Similarity=0.412 Sum_probs=81.5
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+|||||||||+|||||+.+|++|||||||+|||+..++.+.+.|+++.+ .|.|+|+||||.+
T Consensus 127 ~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ 206 (375)
T PRK09452 127 EALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE 206 (375)
T ss_pred HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 577888995 47899999999999999999999999999999999999999999999999999875 4999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 207 ea~~laDri~v 217 (375)
T PRK09452 207 EALTMSDRIVV 217 (375)
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 40
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.93 E-value=7.6e-26 Score=183.31 Aligned_cols=88 Identities=28% Similarity=0.518 Sum_probs=82.1
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+||||||||++|||||+.+|++||+||||++||+.++..+++.|++++++ |.|||++||+++
T Consensus 123 e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 123 ELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD 202 (343)
T ss_pred HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 678899996 478999999999999999999999999999999999999999999999999999764 999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
.+.+ ||||++
T Consensus 203 ~v~~~~d~v~v 213 (343)
T TIGR02314 203 VVKRICDCVAV 213 (343)
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 41
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.93 E-value=1.1e-25 Score=169.93 Aligned_cols=87 Identities=31% Similarity=0.459 Sum_probs=80.4
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|+++++ .|+|||++||+++
T Consensus 123 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 202 (218)
T cd03255 123 ELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202 (218)
T ss_pred HHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 577888985 36888999999999999999999999999999999999999999999999999976 5899999999999
Q ss_pred HHhcCCccc
Q psy4761 122 EARHAHKVP 130 (131)
Q Consensus 122 ~~~~~dri~ 130 (131)
++..||+++
T Consensus 203 ~~~~~d~v~ 211 (218)
T cd03255 203 LAEYADRII 211 (218)
T ss_pred HHhhhcEEE
Confidence 987799985
No 42
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.93 E-value=1.3e-25 Score=169.86 Aligned_cols=87 Identities=26% Similarity=0.419 Sum_probs=80.4
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.++++ ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||+++
T Consensus 124 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 124 EMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 577888985 47889999999999999999999999999999999999999999999999999875 4899999999999
Q ss_pred HHhcCCccc
Q psy4761 122 EARHAHKVP 130 (131)
Q Consensus 122 ~~~~~dri~ 130 (131)
++..||+++
T Consensus 204 ~~~~~d~v~ 212 (221)
T TIGR02211 204 LAKKLDRVL 212 (221)
T ss_pred HHhhcCEEE
Confidence 998899875
No 43
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.4e-26 Score=182.90 Aligned_cols=88 Identities=26% Similarity=0.459 Sum_probs=81.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|+++.++ |.|+|+||||++
T Consensus 111 ~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~ 190 (352)
T PRK11144 111 KIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD 190 (352)
T ss_pred HHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 578888995 478999999999999999999999999999999999999999999999999998755 899999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. |||+++
T Consensus 191 ~~~~~~d~i~~ 201 (352)
T PRK11144 191 EILRLADRVVV 201 (352)
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 44
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.2e-26 Score=185.76 Aligned_cols=88 Identities=33% Similarity=0.485 Sum_probs=81.0
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||++||+..++.+.+.++++.+ .|.|+|+||||++
T Consensus 132 ~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 211 (377)
T PRK11607 132 EMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE 211 (377)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 578888995 47899999999999999999999999999999999999999999999999998864 5999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 212 ea~~laDri~v 222 (377)
T PRK11607 212 EAMTMAGRIAI 222 (377)
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 45
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.93 E-value=1.5e-25 Score=168.53 Aligned_cols=87 Identities=34% Similarity=0.527 Sum_probs=80.5
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+|||||++|||||+.+|+++||||||+|||+..++.+.+.|++++++|.|||++||++++
T Consensus 119 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~ 198 (214)
T cd03292 119 AALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKEL 198 (214)
T ss_pred HHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 567888885 4688899999999999999999999999999999999999999999999999987679999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+++
T Consensus 199 ~~~~~d~i~ 207 (214)
T cd03292 199 VDTTRHRVI 207 (214)
T ss_pred HHHhCCEEE
Confidence 987 99985
No 46
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.93 E-value=1.3e-25 Score=178.34 Aligned_cols=88 Identities=39% Similarity=0.688 Sum_probs=81.6
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++.. .++++++||||||||++|||||+.+|+++||||||+|||+..++.+.+.|++++++|.|||++||++++
T Consensus 118 ~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~ 197 (303)
T TIGR01288 118 SLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 197 (303)
T ss_pred HHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 4678889864 788999999999999999999999999999999999999999999999999997779999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
+.. ||||++
T Consensus 198 ~~~~~d~i~~ 207 (303)
T TIGR01288 198 AERLCDRLCV 207 (303)
T ss_pred HHHhCCEEEE
Confidence 987 999863
No 47
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.93 E-value=1.7e-25 Score=170.72 Aligned_cols=87 Identities=32% Similarity=0.525 Sum_probs=80.9
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
++++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++|.|||++||++++
T Consensus 126 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 205 (236)
T cd03219 126 ELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV 205 (236)
T ss_pred HHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 567888885 4788999999999999999999999999999999999999999999999999987678999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+++
T Consensus 206 ~~~~~d~i~ 214 (236)
T cd03219 206 VMSLADRVT 214 (236)
T ss_pred HHHhCCEEE
Confidence 987 99985
No 48
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.6e-25 Score=169.68 Aligned_cols=87 Identities=34% Similarity=0.483 Sum_probs=79.9
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|+++.+ .|.|||++||+++
T Consensus 114 ~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~ 193 (220)
T cd03293 114 ELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID 193 (220)
T ss_pred HHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 577888885 46888999999999999999999999999999999999999999999999999864 5899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+++
T Consensus 194 ~~~~~~d~i~ 203 (220)
T cd03293 194 EAVFLADRVV 203 (220)
T ss_pred HHHHhCCEEE
Confidence 8876 99985
No 49
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.93 E-value=2.6e-26 Score=182.28 Aligned_cols=88 Identities=34% Similarity=0.528 Sum_probs=81.2
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
..+++.+++. ..+++++.||+|||||++|||||+++|+++||||||+|||+.+++.+++.++++++ +.|||++||+++
T Consensus 115 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~ 193 (301)
T TIGR03522 115 EEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ 193 (301)
T ss_pred HHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH
Confidence 3578888996 47899999999999999999999999999999999999999999999999999864 799999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.+ ||||++
T Consensus 194 ~~~~~~d~i~~ 204 (301)
T TIGR03522 194 EVEAICDRVII 204 (301)
T ss_pred HHHHhCCEEEE
Confidence 9988 999863
No 50
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=8.1e-26 Score=169.56 Aligned_cols=88 Identities=30% Similarity=0.463 Sum_probs=81.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
..+..+|+. ..++.|.+||||||||+++||+|+++-+|++||||+++|||..+.++..++.+++ +++.|++||||.++
T Consensus 112 ~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~ 191 (231)
T COG3840 112 AAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE 191 (231)
T ss_pred HHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 467888995 5889999999999999999999999999999999999999999999999999998 56999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.+ +||++|
T Consensus 192 Da~~ia~~~~f 202 (231)
T COG3840 192 DAARIADRVVF 202 (231)
T ss_pred HHHHhhhceEE
Confidence 9998 898865
No 51
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.93 E-value=9e-26 Score=183.04 Aligned_cols=88 Identities=31% Similarity=0.495 Sum_probs=81.4
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++ |.|||++||+++
T Consensus 114 ~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~ 193 (354)
T TIGR02142 114 RVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ 193 (354)
T ss_pred HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 578888995 478999999999999999999999999999999999999999999999999998765 899999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. |||+++
T Consensus 194 ~~~~~~d~i~~ 204 (354)
T TIGR02142 194 EVLRLADRVVV 204 (354)
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 52
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.3e-25 Score=170.24 Aligned_cols=87 Identities=33% Similarity=0.544 Sum_probs=80.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+.|+++++ .|.|||++||+++
T Consensus 127 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 206 (241)
T cd03256 127 AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD 206 (241)
T ss_pred HHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 567888885 47889999999999999999999999999999999999999999999999999875 4899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+++
T Consensus 207 ~~~~~~d~v~ 216 (241)
T cd03256 207 LAREYADRIV 216 (241)
T ss_pred HHHHhCCEEE
Confidence 9986 99985
No 53
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.1e-25 Score=168.97 Aligned_cols=87 Identities=38% Similarity=0.696 Sum_probs=80.7
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+.|+++.++ |.|||++||+++
T Consensus 114 ~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~ 193 (220)
T cd03265 114 ELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME 193 (220)
T ss_pred HHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 577888985 368899999999999999999999999999999999999999999999999998765 899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 194 ~~~~~~d~i~ 203 (220)
T cd03265 194 EAEQLCDRVA 203 (220)
T ss_pred HHHHhCCEEE
Confidence 9987 99985
No 54
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.92 E-value=2.2e-25 Score=170.53 Aligned_cols=87 Identities=31% Similarity=0.464 Sum_probs=80.2
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++++ .|.|||++||+++
T Consensus 97 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 176 (230)
T TIGR01184 97 EHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD 176 (230)
T ss_pred HHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 567888885 47889999999999999999999999999999999999999999999999999875 4899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 177 ~~~~~~d~v~ 186 (230)
T TIGR01184 177 EALLLSDRVV 186 (230)
T ss_pred HHHHhcCEEE
Confidence 9887 99985
No 55
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.92 E-value=2.4e-25 Score=167.52 Aligned_cols=87 Identities=26% Similarity=0.405 Sum_probs=80.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|+++++ .|.|||++||+++
T Consensus 113 ~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 113 EVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred HHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 567888885 47889999999999999999999999999999999999999999999999999875 4899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+++
T Consensus 193 ~~~~~~d~i~ 202 (213)
T cd03301 193 EAMTMADRIA 202 (213)
T ss_pred HHHHhcCeEE
Confidence 9987 99985
No 56
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.92 E-value=3e-25 Score=166.87 Aligned_cols=87 Identities=31% Similarity=0.538 Sum_probs=80.6
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.|+++++.|.|||++||++++
T Consensus 118 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~ 197 (213)
T cd03262 118 ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF 197 (213)
T ss_pred HHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 467888885 4788999999999999999999999999999999999999999999999999998778999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+++
T Consensus 198 ~~~~~d~i~ 206 (213)
T cd03262 198 AREVADRVI 206 (213)
T ss_pred HHHhCCEEE
Confidence 987 99985
No 57
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.92 E-value=2e-25 Score=168.51 Aligned_cols=87 Identities=28% Similarity=0.505 Sum_probs=80.9
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+.|++++++|.|||++||++++
T Consensus 119 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 198 (218)
T cd03266 119 ELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQE 198 (218)
T ss_pred HHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 577888985 4788999999999999999999999999999999999999999999999999997779999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. |||++
T Consensus 199 ~~~~~d~i~ 207 (218)
T cd03266 199 VERLCDRVV 207 (218)
T ss_pred HHHhcCEEE
Confidence 887 99985
No 58
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.3e-25 Score=174.96 Aligned_cols=89 Identities=34% Similarity=0.511 Sum_probs=81.5
Q ss_pred HHHHHhcCCC---CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEc
Q psy4761 43 WYISLLNGLP---DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118 (131)
Q Consensus 43 ~~~~~~~~l~---~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH 118 (131)
..+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|++++++ |.|||++||
T Consensus 124 ~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtH 203 (287)
T PRK13637 124 KRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSH 203 (287)
T ss_pred HHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3678889995 368899999999999999999999999999999999999999999999999999764 999999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
+++++.. ||||++
T Consensus 204 d~~~~~~~~drv~~ 217 (287)
T PRK13637 204 SMEDVAKLADRIIV 217 (287)
T ss_pred CHHHHHHhCCEEEE
Confidence 9999976 999863
No 59
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.8e-25 Score=167.66 Aligned_cols=88 Identities=30% Similarity=0.459 Sum_probs=80.7
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|++++++ |.|||++||+++
T Consensus 114 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 193 (214)
T cd03297 114 ELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193 (214)
T ss_pred HHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH
Confidence 577888885 368899999999999999999999999999999999999999999999999999765 899999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||++++
T Consensus 194 ~~~~~~d~i~~ 204 (214)
T cd03297 194 EAEYLADRIVV 204 (214)
T ss_pred HHHHhcCEEEE
Confidence 9976 999853
No 60
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.8e-25 Score=177.92 Aligned_cols=88 Identities=24% Similarity=0.440 Sum_probs=81.3
Q ss_pred HHHHhcCCCC----CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEc
Q psy4761 44 YISLLNGLPD----PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~----~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH 118 (131)
++++.+++.. .++++.+||||||||++|||||+.+|++||+||||+|||+..+..+.+.|+++.++ |.|||+|||
T Consensus 138 ~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itH 217 (330)
T PRK15093 138 ELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217 (330)
T ss_pred HHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 5788899953 47899999999999999999999999999999999999999999999999999864 999999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
|++++.. ||||++
T Consensus 218 dl~~v~~~~dri~v 231 (330)
T PRK15093 218 DLQMLSQWADKINV 231 (330)
T ss_pred CHHHHHHhCCEEEE
Confidence 9999987 999864
No 61
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.8e-25 Score=173.51 Aligned_cols=87 Identities=29% Similarity=0.322 Sum_probs=81.0
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++++
T Consensus 121 ~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~ 200 (274)
T PRK13647 121 EALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDL 200 (274)
T ss_pred HHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 577888985 4788999999999999999999999999999999999999999999999999997679999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||||+
T Consensus 201 ~~~~~d~i~ 209 (274)
T PRK13647 201 AAEWADQVI 209 (274)
T ss_pred HHHhCCEEE
Confidence 976 99986
No 62
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.7e-25 Score=173.97 Aligned_cols=88 Identities=33% Similarity=0.431 Sum_probs=81.5
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|++++++|.|||++||+++
T Consensus 127 ~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~ 206 (287)
T PRK13641 127 KWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD 206 (287)
T ss_pred HHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 567888995 368999999999999999999999999999999999999999999999999998777999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. |||+++
T Consensus 207 ~~~~~~d~v~~ 217 (287)
T PRK13641 207 DVAEYADDVLV 217 (287)
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 63
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.92 E-value=1.8e-25 Score=183.44 Aligned_cols=88 Identities=32% Similarity=0.473 Sum_probs=81.6
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|.++.++ |+|||++|||++
T Consensus 147 e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 147 EQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 578899995 478899999999999999999999999999999999999999999999999999754 999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.+ ||||++
T Consensus 227 e~~~l~DrI~v 237 (382)
T TIGR03415 227 EALKIGNRIAI 237 (382)
T ss_pred HHHHhCCEEEE
Confidence 9977 999863
No 64
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.92 E-value=4.2e-25 Score=168.19 Aligned_cols=87 Identities=28% Similarity=0.470 Sum_probs=80.6
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|++|||||||+|||+.+++.+.+.|+++.++|.|||++||++++
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 195 (232)
T cd03218 116 ELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRE 195 (232)
T ss_pred HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 567888885 4788999999999999999999999999999999999999999999999999987778999999999998
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+++
T Consensus 196 ~~~~~d~i~ 204 (232)
T cd03218 196 TLSITDRAY 204 (232)
T ss_pred HHHhCCEEE
Confidence 887 99985
No 65
>PRK10908 cell division protein FtsE; Provisional
Probab=99.92 E-value=4.7e-25 Score=167.28 Aligned_cols=87 Identities=29% Similarity=0.436 Sum_probs=80.6
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.|++++++|.|+|++||++++
T Consensus 120 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (222)
T PRK10908 120 AALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL 199 (222)
T ss_pred HHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 567888885 4688999999999999999999999999999999999999999999999999987678999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||||+
T Consensus 200 ~~~~~d~i~ 208 (222)
T PRK10908 200 ISRRSYRML 208 (222)
T ss_pred HHHhCCEEE
Confidence 987 99985
No 66
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.8e-25 Score=166.43 Aligned_cols=88 Identities=32% Similarity=0.478 Sum_probs=80.9
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
+++++.+++. ..++++.+||+|||||++|||||+.+|+++||||||+|||+..++.+.+.|+++++ .|.|||++||++
T Consensus 110 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 189 (211)
T cd03298 110 EVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP 189 (211)
T ss_pred HHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3578888985 47889999999999999999999999999999999999999999999999999875 489999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
+++.. |||++
T Consensus 190 ~~~~~~~d~i~ 200 (211)
T cd03298 190 EDAKRLAQRVV 200 (211)
T ss_pred HHHHhhhCEEE
Confidence 99987 99985
No 67
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.5e-25 Score=169.81 Aligned_cols=87 Identities=33% Similarity=0.449 Sum_probs=80.2
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||+|||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++ |.|||++||+++
T Consensus 119 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 198 (239)
T cd03296 119 ELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE 198 (239)
T ss_pred HHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 567888885 478899999999999999999999999999999999999999999999999999764 899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 199 ~~~~~~d~i~ 208 (239)
T cd03296 199 EALEVADRVV 208 (239)
T ss_pred HHHHhCCEEE
Confidence 9876 99985
No 68
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.92 E-value=3.8e-25 Score=169.42 Aligned_cols=87 Identities=32% Similarity=0.523 Sum_probs=79.9
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|+++++ .|.|||++||+++
T Consensus 128 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~ 207 (243)
T TIGR02315 128 SALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD 207 (243)
T ss_pred HHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 467888885 46889999999999999999999999999999999999999999999999999875 4899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.+ ||+++
T Consensus 208 ~~~~~~d~v~ 217 (243)
T TIGR02315 208 LAKKYADRIV 217 (243)
T ss_pred HHHHhcCeEE
Confidence 9976 99975
No 69
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.92 E-value=4.8e-25 Score=169.67 Aligned_cols=87 Identities=31% Similarity=0.484 Sum_probs=80.7
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.++|.|||++||++++
T Consensus 127 ~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~ 206 (250)
T PRK11264 127 ELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF 206 (250)
T ss_pred HHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 5678888864 688999999999999999999999999999999999999999999999999987779999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. |||++
T Consensus 207 ~~~~~d~i~ 215 (250)
T PRK11264 207 ARDVADRAI 215 (250)
T ss_pred HHHhcCEEE
Confidence 987 99986
No 70
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=2.5e-25 Score=187.37 Aligned_cols=88 Identities=27% Similarity=0.479 Sum_probs=81.9
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
++++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++|.|||++|||+++
T Consensus 123 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 202 (510)
T PRK15439 123 QLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE 202 (510)
T ss_pred HHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 577888996 4788999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
+.. ||||++
T Consensus 203 ~~~~~d~i~~ 212 (510)
T PRK15439 203 IRQLADRISV 212 (510)
T ss_pred HHHhCCEEEE
Confidence 987 999863
No 71
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.92 E-value=6.7e-25 Score=164.21 Aligned_cols=88 Identities=34% Similarity=0.445 Sum_probs=80.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|+++.++|.|||++||+++.
T Consensus 117 ~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 196 (206)
T TIGR03608 117 EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV 196 (206)
T ss_pred HHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 577888885 4788999999999999999999999999999999999999999999999999987678999999999998
Q ss_pred HhcCCcccC
Q psy4761 123 ARHAHKVPI 131 (131)
Q Consensus 123 ~~~~dri~~ 131 (131)
+..||++++
T Consensus 197 ~~~~d~i~~ 205 (206)
T TIGR03608 197 AKQADRVIE 205 (206)
T ss_pred HhhcCEEEe
Confidence 777999863
No 72
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.92 E-value=4.6e-25 Score=167.17 Aligned_cols=87 Identities=33% Similarity=0.505 Sum_probs=79.9
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcCh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~ 120 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++||++
T Consensus 127 ~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 206 (228)
T cd03257 127 LLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL 206 (228)
T ss_pred HHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 466788884 368899999999999999999999999999999999999999999999999999765 89999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
+++.. ||+++
T Consensus 207 ~~~~~~~d~i~ 217 (228)
T cd03257 207 GVVAKIADRVA 217 (228)
T ss_pred HHHHHhcCeEE
Confidence 99986 99986
No 73
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.8e-25 Score=178.20 Aligned_cols=88 Identities=30% Similarity=0.558 Sum_probs=81.3
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++
T Consensus 123 ~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~ 202 (343)
T PRK11153 123 ELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD 202 (343)
T ss_pred HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 5788889964 78899999999999999999999999999999999999999999999999999754 899999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. |||+++
T Consensus 203 ~i~~~~d~v~~ 213 (343)
T PRK11153 203 VVKRICDRVAV 213 (343)
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 74
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.1e-25 Score=175.24 Aligned_cols=88 Identities=32% Similarity=0.434 Sum_probs=81.6
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|+++++.|.|||++|||++
T Consensus 147 ~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~ 226 (305)
T PRK13651 147 KYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD 226 (305)
T ss_pred HHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH
Confidence 578889995 378999999999999999999999999999999999999999999999999999877999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 227 ~~~~~adrv~v 237 (305)
T PRK13651 227 NVLEWTKRTIF 237 (305)
T ss_pred HHHHhCCEEEE
Confidence 8876 999863
No 75
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.5e-25 Score=167.75 Aligned_cols=87 Identities=29% Similarity=0.492 Sum_probs=79.9
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++.. .++++.+||||||||++||||++.+|++|||||||+|||+.+++.+.+.|+++++ .|.|||++||+++
T Consensus 128 ~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~ 207 (233)
T PRK11629 128 EMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ 207 (233)
T ss_pred HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 5788899954 6888999999999999999999999999999999999999999999999999875 5899999999999
Q ss_pred HHhcCCccc
Q psy4761 122 EARHAHKVP 130 (131)
Q Consensus 122 ~~~~~dri~ 130 (131)
++..+|+++
T Consensus 208 ~~~~~~~~~ 216 (233)
T PRK11629 208 LAKRMSRQL 216 (233)
T ss_pred HHHhhCEEE
Confidence 998877764
No 76
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.92 E-value=6.1e-25 Score=167.06 Aligned_cols=87 Identities=32% Similarity=0.403 Sum_probs=79.9
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|++++++ |.|||++||+++
T Consensus 129 ~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 208 (228)
T PRK10584 129 ALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ 208 (228)
T ss_pred HHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 567888885 468889999999999999999999999999999999999999999999999998754 899999999999
Q ss_pred HHhcCCccc
Q psy4761 122 EARHAHKVP 130 (131)
Q Consensus 122 ~~~~~dri~ 130 (131)
++..||+++
T Consensus 209 ~~~~~d~i~ 217 (228)
T PRK10584 209 LAARCDRRL 217 (228)
T ss_pred HHHhCCEEE
Confidence 987799875
No 77
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=5.7e-25 Score=167.70 Aligned_cols=87 Identities=31% Similarity=0.543 Sum_probs=80.5
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||+++
T Consensus 123 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 202 (233)
T cd03258 123 ELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME 202 (233)
T ss_pred HHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 577888985 468899999999999999999999999999999999999999999999999998764 899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+++
T Consensus 203 ~~~~~~d~i~ 212 (233)
T cd03258 203 VVKRICDRVA 212 (233)
T ss_pred HHHHhCCEEE
Confidence 9987 99985
No 78
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.3e-25 Score=173.06 Aligned_cols=88 Identities=32% Similarity=0.447 Sum_probs=81.0
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.+++++++|.|||++|||++
T Consensus 126 ~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~ 205 (288)
T PRK13643 126 EKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD 205 (288)
T ss_pred HHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 567888984 368899999999999999999999999999999999999999999999999998777999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 206 ~~~~~~dri~~ 216 (288)
T PRK13643 206 DVADYADYVYL 216 (288)
T ss_pred HHHHhCCEEEE
Confidence 9976 999863
No 79
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.6e-25 Score=176.46 Aligned_cols=88 Identities=32% Similarity=0.464 Sum_probs=80.9
Q ss_pred HHHHhcCCCC----CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEc
Q psy4761 44 YISLLNGLPD----PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~----~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH 118 (131)
.+++.+++.. .++++.+||||||||++|||||+.+|++||+||||+|||+..+..+++.|+++++ .|.|+|+|||
T Consensus 133 ~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTH 212 (326)
T PRK11022 133 DLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITH 212 (326)
T ss_pred HHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5788889952 4789999999999999999999999999999999999999999999999999975 5999999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
|++++.. ||||++
T Consensus 213 dl~~~~~~adri~v 226 (326)
T PRK11022 213 DLALVAEAAHKIIV 226 (326)
T ss_pred CHHHHHHhCCEEEE
Confidence 9999976 999863
No 80
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=5.4e-25 Score=165.53 Aligned_cols=87 Identities=31% Similarity=0.461 Sum_probs=80.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
++++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+..++.+.+.+++++++|.|||++||++++
T Consensus 111 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 190 (210)
T cd03269 111 EWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL 190 (210)
T ss_pred HHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 567888885 4688899999999999999999999999999999999999999999999999987778999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+++
T Consensus 191 ~~~~~d~i~ 199 (210)
T cd03269 191 VEELCDRVL 199 (210)
T ss_pred HHHhhhEEE
Confidence 977 99885
No 81
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.92 E-value=6.3e-25 Score=177.04 Aligned_cols=88 Identities=31% Similarity=0.476 Sum_probs=81.4
Q ss_pred HHHHhcCCC-C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcCh
Q psy4761 44 YISLLNGLP-D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~ 120 (131)
.+++.+++. . .++++.+|||||+||++|||||+.+|++||+||||+|||+..+..+.+.|++++++ |.|+|+||||+
T Consensus 143 ~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl 222 (331)
T PRK15079 143 AMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL 222 (331)
T ss_pred HHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578888994 3 68999999999999999999999999999999999999999999999999999764 99999999999
Q ss_pred hHHhc-CCcccC
Q psy4761 121 EEARH-AHKVPI 131 (131)
Q Consensus 121 ~~~~~-~dri~~ 131 (131)
+++.+ ||||++
T Consensus 223 ~~~~~~~dri~v 234 (331)
T PRK15079 223 AVVKHISDRVLV 234 (331)
T ss_pred HHHHHhCCEEEE
Confidence 99987 999863
No 82
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=6.5e-25 Score=171.64 Aligned_cols=87 Identities=30% Similarity=0.424 Sum_probs=80.2
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++++ .|.|||++||+++
T Consensus 143 ~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~ 222 (269)
T cd03294 143 EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD 222 (269)
T ss_pred HHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 567888985 47899999999999999999999999999999999999999999999999999875 4899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+++
T Consensus 223 ~~~~~~d~v~ 232 (269)
T cd03294 223 EALRLGDRIA 232 (269)
T ss_pred HHHHhcCEEE
Confidence 9876 99985
No 83
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.92 E-value=8.6e-25 Score=166.57 Aligned_cols=87 Identities=30% Similarity=0.443 Sum_probs=80.7
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++|+||||+|||+.+++.+.+.|++++++|.|+|++||++++
T Consensus 96 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~ 175 (223)
T TIGR03771 96 DALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQ 175 (223)
T ss_pred HHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 567888885 4788899999999999999999999999999999999999999999999999987779999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+++
T Consensus 176 ~~~~~d~i~ 184 (223)
T TIGR03771 176 AMATCDRVV 184 (223)
T ss_pred HHHhCCEEE
Confidence 877 99985
No 84
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.1e-25 Score=171.00 Aligned_cols=87 Identities=29% Similarity=0.351 Sum_probs=80.4
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|++++++|.|||++||++++
T Consensus 119 ~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~ 198 (271)
T PRK13638 119 EALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL 198 (271)
T ss_pred HHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 467888885 4788999999999999999999999999999999999999999999999999987678999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. |||++
T Consensus 199 ~~~~~d~i~ 207 (271)
T PRK13638 199 IYEISDAVY 207 (271)
T ss_pred HHHhCCEEE
Confidence 976 99985
No 85
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.92 E-value=7.5e-25 Score=180.76 Aligned_cols=89 Identities=24% Similarity=0.323 Sum_probs=82.5
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
+++++.+++. ..++++.+||||||||++|||||+++|++|||||||+|||+..+..++++|++++++|.|||++||+++
T Consensus 121 ~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~ 200 (402)
T PRK09536 121 ERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD 200 (402)
T ss_pred HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 3678889995 478999999999999999999999999999999999999999999999999999877899999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.+ |||+++
T Consensus 201 ~~~~~adrii~ 211 (402)
T PRK09536 201 LAARYCDELVL 211 (402)
T ss_pred HHHHhCCEEEE
Confidence 9977 999863
No 86
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.8e-25 Score=176.15 Aligned_cols=88 Identities=25% Similarity=0.419 Sum_probs=81.5
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
++++.++++ ..++++.+||||||||++|||||+.+|++||+||||++||+..+..+++.|+++++ .|.|+|+||||+
T Consensus 136 ~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl 215 (327)
T PRK11308 136 AMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL 215 (327)
T ss_pred HHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578889995 26899999999999999999999999999999999999999999999999999975 499999999999
Q ss_pred hHHhc-CCcccC
Q psy4761 121 EEARH-AHKVPI 131 (131)
Q Consensus 121 ~~~~~-~dri~~ 131 (131)
+++.+ ||||++
T Consensus 216 ~~~~~~adrv~v 227 (327)
T PRK11308 216 SVVEHIADEVMV 227 (327)
T ss_pred HHHHHhCCEEEE
Confidence 99987 999863
No 87
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.9e-25 Score=172.74 Aligned_cols=87 Identities=36% Similarity=0.547 Sum_probs=80.7
Q ss_pred HHHHhcCCC-C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 44 YISLLNGLP-D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
.+++.+++. . .++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|+++++ .|.|||++|||+
T Consensus 127 ~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~ 206 (290)
T PRK13634 127 EMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM 206 (290)
T ss_pred HHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 577889995 4 6889999999999999999999999999999999999999999999999999975 499999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
+++.. ||||+
T Consensus 207 ~~~~~~~drv~ 217 (290)
T PRK13634 207 EDAARYADQIV 217 (290)
T ss_pred HHHHHhCCEEE
Confidence 99976 99986
No 88
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=1.9e-25 Score=167.90 Aligned_cols=88 Identities=27% Similarity=0.484 Sum_probs=81.2
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.++..+|+. ..+.+|..||||||||++|||||+.+|+++++|||||+|||+...++.+.+++++++|+|.++|||.|.+
T Consensus 135 ~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F 214 (256)
T COG4598 135 KYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF 214 (256)
T ss_pred HHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH
Confidence 567888995 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
+.+ +..++|
T Consensus 215 AR~Vss~v~f 224 (256)
T COG4598 215 ARDVSSHVIF 224 (256)
T ss_pred HHhhhhheEE
Confidence 987 655543
No 89
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.3e-25 Score=169.13 Aligned_cols=87 Identities=29% Similarity=0.429 Sum_probs=80.4
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++||||++.+|++|||||||+|||+.+++.+.+.|.+++++ |.|||++||+++
T Consensus 136 ~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~ 215 (255)
T PRK11300 136 TWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK 215 (255)
T ss_pred HHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 467788885 478999999999999999999999999999999999999999999999999999765 899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+++
T Consensus 216 ~~~~~~d~i~ 225 (255)
T PRK11300 216 LVMGISDRIY 225 (255)
T ss_pred HHHHhCCEEE
Confidence 9977 99985
No 90
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=4.3e-25 Score=168.08 Aligned_cols=87 Identities=34% Similarity=0.528 Sum_probs=78.5
Q ss_pred HHHHhcC-CC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcCh
Q psy4761 44 YISLLNG-LP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~-l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~ 120 (131)
.+++.++ +. ..++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+++++ |.|||++||++
T Consensus 113 ~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 192 (230)
T TIGR03410 113 EIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL 192 (230)
T ss_pred HHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence 4566665 43 368899999999999999999999999999999999999999999999999998764 89999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
+++.. ||+++
T Consensus 193 ~~~~~~~d~v~ 203 (230)
T TIGR03410 193 DFARELADRYY 203 (230)
T ss_pred HHHHHhCCEEE
Confidence 99987 99885
No 91
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.5e-25 Score=171.90 Aligned_cols=88 Identities=26% Similarity=0.337 Sum_probs=81.4
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcCh
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~ 120 (131)
+.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++||++
T Consensus 122 ~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~ 201 (279)
T PRK13650 122 NEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL 201 (279)
T ss_pred HHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3578889996 478999999999999999999999999999999999999999999999999999764 99999999999
Q ss_pred hHHhcCCccc
Q psy4761 121 EEARHAHKVP 130 (131)
Q Consensus 121 ~~~~~~dri~ 130 (131)
+++..||||+
T Consensus 202 ~~~~~~dri~ 211 (279)
T PRK13650 202 DEVALSDRVL 211 (279)
T ss_pred HHHHhCCEEE
Confidence 9997799985
No 92
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.92 E-value=7.9e-25 Score=167.75 Aligned_cols=87 Identities=31% Similarity=0.518 Sum_probs=80.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
++++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|++++++|.|||++||++++
T Consensus 119 ~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 198 (240)
T PRK09493 119 ELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGF 198 (240)
T ss_pred HHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 577888885 4688999999999999999999999999999999999999999999999999987779999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. |||++
T Consensus 199 ~~~~~d~i~ 207 (240)
T PRK09493 199 AEKVASRLI 207 (240)
T ss_pred HHHhCCEEE
Confidence 977 99985
No 93
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.92 E-value=1e-24 Score=166.40 Aligned_cols=87 Identities=22% Similarity=0.244 Sum_probs=80.0
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.+++++++|.|||++||++++
T Consensus 125 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~ 204 (224)
T cd03220 125 EIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS 204 (224)
T ss_pred HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 467778885 4788999999999999999999999999999999999999999999999999987668999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+++
T Consensus 205 ~~~~~d~i~ 213 (224)
T cd03220 205 IKRLCDRAL 213 (224)
T ss_pred HHHhCCEEE
Confidence 987 99875
No 94
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.92 E-value=1e-24 Score=161.24 Aligned_cols=86 Identities=30% Similarity=0.438 Sum_probs=78.9
Q ss_pred HHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChhH
Q psy4761 45 ISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIEE 122 (131)
Q Consensus 45 ~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~~ 122 (131)
+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.|.+++++ |.|+|++||++++
T Consensus 81 ~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 81 ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 56778885 367889999999999999999999999999999999999999999999999998765 8999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+++
T Consensus 161 ~~~~~d~~~ 169 (180)
T cd03214 161 AARYADRVI 169 (180)
T ss_pred HHHhCCEEE
Confidence 976 99885
No 95
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.92 E-value=1e-24 Score=166.98 Aligned_cols=87 Identities=32% Similarity=0.612 Sum_probs=80.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|+++++ .|.|||++||+++
T Consensus 115 ~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 194 (236)
T TIGR03864 115 ALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD 194 (236)
T ss_pred HHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 567888885 47889999999999999999999999999999999999999999999999999874 5899999999999
Q ss_pred HHhcCCccc
Q psy4761 122 EARHAHKVP 130 (131)
Q Consensus 122 ~~~~~dri~ 130 (131)
++..||+++
T Consensus 195 ~~~~~d~i~ 203 (236)
T TIGR03864 195 EIEADDRLV 203 (236)
T ss_pred hHhhCCEEE
Confidence 998899985
No 96
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.2e-25 Score=178.51 Aligned_cols=88 Identities=27% Similarity=0.385 Sum_probs=81.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++.++ |.|+|+||||++
T Consensus 116 ~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 116 QVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred HHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 578889995 478999999999999999999999999999999999999999999999999998754 899999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 196 ~~~~~~d~i~v 206 (369)
T PRK11000 196 EAMTLADKIVV 206 (369)
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 97
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=5.4e-25 Score=170.25 Aligned_cols=89 Identities=31% Similarity=0.492 Sum_probs=83.6
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
..+++++|+. ..++++++||+|+|+|+.|||||+.+|++|+||||++||.+.....+.+.|+++++ .|.||++|.|||
T Consensus 131 ~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM 210 (250)
T COG0411 131 RELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM 210 (250)
T ss_pred HHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 3688999995 58999999999999999999999999999999999999999999999999999987 479999999999
Q ss_pred hHHhc-CCcccC
Q psy4761 121 EEARH-AHKVPI 131 (131)
Q Consensus 121 ~~~~~-~dri~~ 131 (131)
+.+.+ ||||++
T Consensus 211 ~~Vm~l~dri~V 222 (250)
T COG0411 211 KLVMGLADRIVV 222 (250)
T ss_pred HHHhhhccEEEe
Confidence 99998 999864
No 98
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.92 E-value=9.6e-25 Score=170.55 Aligned_cols=87 Identities=28% Similarity=0.474 Sum_probs=80.2
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++.. .++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|++++++ |.|||+|||+++
T Consensus 126 ~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 205 (269)
T PRK11831 126 MKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 205 (269)
T ss_pred HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 4678889854 78889999999999999999999999999999999999999999999999998754 899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+++
T Consensus 206 ~~~~~~d~v~ 215 (269)
T PRK11831 206 EVLSIADHAY 215 (269)
T ss_pred HHHHhhCEEE
Confidence 9987 99875
No 99
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.92 E-value=1.4e-24 Score=168.25 Aligned_cols=87 Identities=31% Similarity=0.494 Sum_probs=80.8
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++.. .++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|+++++.|.|||++||+++
T Consensus 134 ~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~ 213 (257)
T PRK10619 134 KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 213 (257)
T ss_pred HHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 5778889964 37889999999999999999999999999999999999999999999999999777999999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||||+
T Consensus 214 ~~~~~~d~i~ 223 (257)
T PRK10619 214 FARHVSSHVI 223 (257)
T ss_pred HHHHhcCEEE
Confidence 9987 99985
No 100
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1e-24 Score=169.46 Aligned_cols=87 Identities=33% Similarity=0.457 Sum_probs=80.1
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++. +.|.|||++||+++
T Consensus 111 ~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~ 190 (255)
T PRK11248 111 QMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE 190 (255)
T ss_pred HHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 577888985 4688899999999999999999999999999999999999999999999999985 45899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 191 ~~~~~~d~i~ 200 (255)
T PRK11248 191 EAVFMATELV 200 (255)
T ss_pred HHHHhCCEEE
Confidence 9987 99985
No 101
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=5.9e-25 Score=185.76 Aligned_cols=88 Identities=32% Similarity=0.486 Sum_probs=81.6
Q ss_pred HHHHhcCCCC-C--CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcC
Q psy4761 44 YISLLNGLPD-P--NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHY 119 (131)
Q Consensus 44 ~~~~~~~l~~-~--~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~ 119 (131)
++++.+++++ . +++|++||||||||+.||+||+++|++||+||||++||+..+.++.++|+++. +.|.++|+||||
T Consensus 135 elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHD 214 (539)
T COG1123 135 ELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214 (539)
T ss_pred HHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCC
Confidence 6889999964 2 45999999999999999999999999999999999999999999999999997 569999999999
Q ss_pred hhHHhc-CCcccC
Q psy4761 120 IEEARH-AHKVPI 131 (131)
Q Consensus 120 ~~~~~~-~dri~~ 131 (131)
+..+.+ ||||++
T Consensus 215 l~Vva~~aDrv~V 227 (539)
T COG1123 215 LGVVAELADRVVV 227 (539)
T ss_pred HHHHHHhcCeEEE
Confidence 999998 999864
No 102
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.2e-24 Score=170.58 Aligned_cols=87 Identities=28% Similarity=0.332 Sum_probs=80.9
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.+++++++|.|||++||++++
T Consensus 119 ~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~ 198 (274)
T PRK13644 119 RALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE 198 (274)
T ss_pred HHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 467888885 4788999999999999999999999999999999999999999999999999988779999999999999
Q ss_pred HhcCCccc
Q psy4761 123 ARHAHKVP 130 (131)
Q Consensus 123 ~~~~dri~ 130 (131)
+..|||++
T Consensus 199 ~~~~d~v~ 206 (274)
T PRK13644 199 LHDADRII 206 (274)
T ss_pred HhhCCEEE
Confidence 97799986
No 103
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.2e-24 Score=168.49 Aligned_cols=87 Identities=22% Similarity=0.301 Sum_probs=80.7
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+|||||+||++||||++.+|+++||||||+|||+.+++.+.+.|++++++|.|||++||++++
T Consensus 121 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~ 200 (255)
T PRK11231 121 QAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQ 200 (255)
T ss_pred HHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 567888885 4788999999999999999999999999999999999999999999999999987678999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.+ ||+++
T Consensus 201 ~~~~~d~i~ 209 (255)
T PRK11231 201 ASRYCDHLV 209 (255)
T ss_pred HHHhcCEEE
Confidence 987 99985
No 104
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.92 E-value=1.3e-24 Score=174.46 Aligned_cols=88 Identities=33% Similarity=0.488 Sum_probs=81.2
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.|+++.++ |.|+|+||||++
T Consensus 83 ~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~ 162 (325)
T TIGR01187 83 EALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162 (325)
T ss_pred HHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 577888985 478999999999999999999999999999999999999999999999999998754 899999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 163 e~~~~~d~i~v 173 (325)
T TIGR01187 163 EAMTMSDRIAI 173 (325)
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 105
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.92 E-value=1.2e-24 Score=166.22 Aligned_cols=88 Identities=30% Similarity=0.409 Sum_probs=80.4
Q ss_pred HHHHhcCCC----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEc
Q psy4761 44 YISLLNGLP----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+.|+++++ .|.|||++||
T Consensus 105 ~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 184 (230)
T TIGR02770 105 EALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH 184 (230)
T ss_pred HHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 577888886 25788999999999999999999999999999999999999999999999999876 4899999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
+++++.. |||+++
T Consensus 185 ~~~~~~~~~d~i~~ 198 (230)
T TIGR02770 185 DLGVVARIADEVAV 198 (230)
T ss_pred CHHHHHHhCCEEEE
Confidence 9999986 999863
No 106
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.91 E-value=1.5e-24 Score=166.20 Aligned_cols=86 Identities=29% Similarity=0.487 Sum_probs=79.7
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
++++.+++. ..++++++|||||+||++||||++.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||++++
T Consensus 126 ~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~ 204 (242)
T TIGR03411 126 EVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEF 204 (242)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHH
Confidence 577888885 46889999999999999999999999999999999999999999999999999865 6899999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+|+
T Consensus 205 ~~~~~d~i~ 213 (242)
T TIGR03411 205 VRSIADKVT 213 (242)
T ss_pred HHHhCCEEE
Confidence 987 99985
No 107
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1e-24 Score=164.14 Aligned_cols=86 Identities=33% Similarity=0.512 Sum_probs=79.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|+++++ +.|||++||++++
T Consensus 113 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~ 191 (211)
T cd03264 113 EVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVED 191 (211)
T ss_pred HHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHH
Confidence 567888885 46889999999999999999999999999999999999999999999999999875 5899999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. |||++
T Consensus 192 ~~~~~d~i~ 200 (211)
T cd03264 192 VESLCNQVA 200 (211)
T ss_pred HHHhCCEEE
Confidence 976 99985
No 108
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.91 E-value=1.7e-24 Score=164.52 Aligned_cols=86 Identities=31% Similarity=0.444 Sum_probs=78.1
Q ss_pred HHHHhcCCCC-CCCC--cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 44 YISLLNGLPD-PNSL--CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~--~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+++.+++.. .+++ +.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|++++++ .|||++||++
T Consensus 122 ~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~ 200 (227)
T cd03260 122 EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM 200 (227)
T ss_pred HHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH
Confidence 5778888853 4555 5999999999999999999999999999999999999999999999999776 9999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
+++.. |||++
T Consensus 201 ~~~~~~~d~i~ 211 (227)
T cd03260 201 QQAARVADRTA 211 (227)
T ss_pred HHHHHhCCEEE
Confidence 99886 99985
No 109
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.91 E-value=1.1e-24 Score=164.69 Aligned_cols=87 Identities=33% Similarity=0.540 Sum_probs=78.4
Q ss_pred HHHHhc-CCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLN-GLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~-~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+ ++. ..++++.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|+++++.|.|||++||+++
T Consensus 114 ~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 193 (222)
T cd03224 114 RVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR 193 (222)
T ss_pred HHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 355665 454 368889999999999999999999999999999999999999999999999998777899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+++
T Consensus 194 ~~~~~~d~i~ 203 (222)
T cd03224 194 FALEIADRAY 203 (222)
T ss_pred HHHHhccEEE
Confidence 9877 99985
No 110
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.91 E-value=2.3e-24 Score=163.50 Aligned_cols=87 Identities=26% Similarity=0.301 Sum_probs=80.1
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++.. .++++.+||+|||||++|||||+.+|+++||||||+|||+..++.+.+.|++++++|.|||++||+++
T Consensus 131 ~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~ 210 (224)
T TIGR02324 131 ELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE 210 (224)
T ss_pred HHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 5678888853 47789999999999999999999999999999999999999999999999999777999999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 211 ~~~~~~d~i~ 220 (224)
T TIGR02324 211 VRELVADRVM 220 (224)
T ss_pred HHHHhcceeE
Confidence 9976 99975
No 111
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.7e-24 Score=173.80 Aligned_cols=88 Identities=33% Similarity=0.417 Sum_probs=80.9
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.++++ ..++.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++
T Consensus 158 ~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~ 237 (320)
T PRK13631 158 FYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME 237 (320)
T ss_pred HHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 567888995 378899999999999999999999999999999999999999999999999998777999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 238 ~~~~~adri~v 248 (320)
T PRK13631 238 HVLEVADEVIV 248 (320)
T ss_pred HHHHhCCEEEE
Confidence 8865 999863
No 112
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.91 E-value=1.6e-24 Score=174.51 Aligned_cols=88 Identities=27% Similarity=0.396 Sum_probs=80.3
Q ss_pred HHHHhcCCCC----CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEc
Q psy4761 44 YISLLNGLPD----PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~----~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH 118 (131)
.+++.++++. .++++.+|||||+||++|||||+.+|++||+||||+|||+..+..+.+.|++++++ |.|+|+|||
T Consensus 141 ~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTH 220 (330)
T PRK09473 141 RMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220 (330)
T ss_pred HHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 5678888853 36789999999999999999999999999999999999999999999999999754 999999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
|++.+.+ ||||++
T Consensus 221 dl~~~~~~~Dri~v 234 (330)
T PRK09473 221 DLGVVAGICDKVLV 234 (330)
T ss_pred CHHHHHHhCCEEEE
Confidence 9999987 999863
No 113
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.5e-24 Score=165.62 Aligned_cols=87 Identities=28% Similarity=0.463 Sum_probs=80.5
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|+++.+ .|.|||++||+++
T Consensus 112 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~ 191 (232)
T PRK10771 112 AIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE 191 (232)
T ss_pred HHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 577888985 47899999999999999999999999999999999999999999999999999875 4899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 192 ~~~~~~d~i~ 201 (232)
T PRK10771 192 DAARIAPRSL 201 (232)
T ss_pred HHHHhCCEEE
Confidence 9977 99985
No 114
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.91 E-value=1.7e-24 Score=168.92 Aligned_cols=87 Identities=33% Similarity=0.488 Sum_probs=80.0
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.|+++.+ .|.|||++||+++
T Consensus 116 ~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~ 195 (257)
T PRK11247 116 QALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS 195 (257)
T ss_pred HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 577888985 47889999999999999999999999999999999999999999999999999864 5899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+|+
T Consensus 196 ~~~~~~d~i~ 205 (257)
T PRK11247 196 EAVAMADRVL 205 (257)
T ss_pred HHHHhCCEEE
Confidence 9876 99986
No 115
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2e-24 Score=169.29 Aligned_cols=87 Identities=32% Similarity=0.482 Sum_probs=80.2
Q ss_pred HHHHhcCCC-C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++. . .++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++|.|||++||+++
T Consensus 127 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 206 (280)
T PRK13649 127 EKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD 206 (280)
T ss_pred HHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 467788885 3 68899999999999999999999999999999999999999999999999998767899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+++
T Consensus 207 ~~~~~~d~i~ 216 (280)
T PRK13649 207 DVANYADFVY 216 (280)
T ss_pred HHHHhCCEEE
Confidence 9977 99885
No 116
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.4e-24 Score=166.71 Aligned_cols=87 Identities=34% Similarity=0.554 Sum_probs=80.2
Q ss_pred HHHHhcCCC---CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcC
Q psy4761 44 YISLLNGLP---DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHY 119 (131)
Q Consensus 44 ~~~~~~~l~---~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~ 119 (131)
.+++.+++. ..++++.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|++++++ |.|||++||+
T Consensus 116 ~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~ 195 (242)
T cd03295 116 ELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195 (242)
T ss_pred HHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 567888886 468889999999999999999999999999999999999999999999999999764 8999999999
Q ss_pred hhHHhc-CCccc
Q psy4761 120 IEEARH-AHKVP 130 (131)
Q Consensus 120 ~~~~~~-~dri~ 130 (131)
++++.. ||+|+
T Consensus 196 ~~~~~~~~d~i~ 207 (242)
T cd03295 196 IDEAFRLADRIA 207 (242)
T ss_pred HHHHHHhCCEEE
Confidence 999877 99985
No 117
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.8e-24 Score=169.99 Aligned_cols=89 Identities=31% Similarity=0.420 Sum_probs=81.7
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
+.+++.+++. ..++++.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ .|.|||++||++
T Consensus 126 ~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~ 205 (280)
T PRK13633 126 DESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYM 205 (280)
T ss_pred HHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCh
Confidence 3577888995 47889999999999999999999999999999999999999999999999999975 499999999999
Q ss_pred hHHhcCCcccC
Q psy4761 121 EEARHAHKVPI 131 (131)
Q Consensus 121 ~~~~~~dri~~ 131 (131)
+++..|||+++
T Consensus 206 ~~~~~~d~v~~ 216 (280)
T PRK13633 206 EEAVEADRIIV 216 (280)
T ss_pred HHHhcCCEEEE
Confidence 99988999863
No 118
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2e-24 Score=165.71 Aligned_cols=87 Identities=39% Similarity=0.552 Sum_probs=80.4
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+|++ ..++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|++++++|.|+|++||++++
T Consensus 124 ~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 203 (242)
T PRK11124 124 KLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV 203 (242)
T ss_pred HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 467888885 4788999999999999999999999999999999999999999999999999987779999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. |||++
T Consensus 204 ~~~~~d~i~ 212 (242)
T PRK11124 204 ARKTASRVV 212 (242)
T ss_pred HHHhcCEEE
Confidence 976 99875
No 119
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.2e-24 Score=168.72 Aligned_cols=87 Identities=24% Similarity=0.348 Sum_probs=80.5
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|++++++|.|||++||++++
T Consensus 125 ~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~ 204 (272)
T PRK15056 125 AALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS 204 (272)
T ss_pred HHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 567888885 4788999999999999999999999999999999999999999999999999997779999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+++
T Consensus 205 ~~~~~d~v~ 213 (272)
T PRK15056 205 VTEFCDYTV 213 (272)
T ss_pred HHHhCCEEE
Confidence 876 99875
No 120
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.1e-24 Score=170.14 Aligned_cols=87 Identities=32% Similarity=0.493 Sum_probs=80.3
Q ss_pred HHHHhcCCC-C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 44 YISLLNGLP-D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
.+++.+|+. . .++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.++++++ .|.|||++||++
T Consensus 127 ~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~ 206 (286)
T PRK13646 127 RLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM 206 (286)
T ss_pred HHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 577888995 3 6789999999999999999999999999999999999999999999999999975 599999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
+++.. ||||+
T Consensus 207 ~~~~~~~dri~ 217 (286)
T PRK13646 207 NEVARYADEVI 217 (286)
T ss_pred HHHHHhCCEEE
Confidence 99876 99986
No 121
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.91 E-value=1.5e-24 Score=168.22 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=80.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+||||||||++|||||+.+|+++||||||++||+..+..+.+.|+++++ .|+|||+|||+++
T Consensus 98 ~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~ 177 (246)
T cd03237 98 EIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII 177 (246)
T ss_pred HHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 567888885 47889999999999999999999999999999999999999999999999999875 4899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 178 ~~~~~~d~i~ 187 (246)
T cd03237 178 MIDYLADRLI 187 (246)
T ss_pred HHHHhCCEEE
Confidence 9987 99985
No 122
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.91 E-value=1.5e-24 Score=164.61 Aligned_cols=87 Identities=30% Similarity=0.550 Sum_probs=80.7
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+||+||++||||++.+|+++||||||+|||+.+++.+.+.|++++++|.|||++||++++
T Consensus 107 ~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~ 186 (223)
T TIGR03740 107 EVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSE 186 (223)
T ss_pred HHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 577888985 3788899999999999999999999999999999999999999999999999987778999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. |||++
T Consensus 187 ~~~~~d~i~ 195 (223)
T TIGR03740 187 VQQLADHIG 195 (223)
T ss_pred HHHhcCEEE
Confidence 976 99985
No 123
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.9e-24 Score=181.74 Aligned_cols=88 Identities=23% Similarity=0.392 Sum_probs=81.8
Q ss_pred HHHHhcCCC-C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++. . .++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++|.|||++|||++
T Consensus 391 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~ 470 (510)
T PRK09700 391 NQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP 470 (510)
T ss_pred HHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 577889995 3 78999999999999999999999999999999999999999999999999999877999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. |||+++
T Consensus 471 ~~~~~~d~i~~ 481 (510)
T PRK09700 471 EIITVCDRIAV 481 (510)
T ss_pred HHHhhCCEEEE
Confidence 9987 999863
No 124
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.91 E-value=2.8e-24 Score=164.44 Aligned_cols=87 Identities=25% Similarity=0.298 Sum_probs=79.0
Q ss_pred HHHHhcCCC-C-CCCCcC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 44 YISLLNGLP-D-PNSLCG-QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~-~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+++.++++ . .++++. +||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|++++++|.|||++||++
T Consensus 125 ~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~ 204 (243)
T TIGR01978 125 AKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ 204 (243)
T ss_pred HHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH
Confidence 567888885 3 577776 5999999999999999999999999999999999999999999999977789999999999
Q ss_pred hHHhc--CCccc
Q psy4761 121 EEARH--AHKVP 130 (131)
Q Consensus 121 ~~~~~--~dri~ 130 (131)
+++.. ||+++
T Consensus 205 ~~~~~~~~d~i~ 216 (243)
T TIGR01978 205 RLLNYIKPDYVH 216 (243)
T ss_pred HHHHhhcCCeEE
Confidence 99986 79885
No 125
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=1.1e-24 Score=162.46 Aligned_cols=87 Identities=30% Similarity=0.369 Sum_probs=81.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
.+++.+|+. ..+.+|.+|||||||||+||||++..|++|+.||||.+||....+++.+++-.+. +.|.|.++||||..
T Consensus 129 ~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~ 208 (228)
T COG4181 129 ALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ 208 (228)
T ss_pred HHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH
Confidence 678999996 4889999999999999999999999999999999999999999999999998886 66999999999999
Q ss_pred HHhcCCccc
Q psy4761 122 EARHAHKVP 130 (131)
Q Consensus 122 ~~~~~dri~ 130 (131)
.+.+|||++
T Consensus 209 LA~Rc~R~~ 217 (228)
T COG4181 209 LAARCDRQL 217 (228)
T ss_pred HHHhhhhee
Confidence 999999975
No 126
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.7e-24 Score=182.00 Aligned_cols=87 Identities=26% Similarity=0.390 Sum_probs=81.5
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++||||++.+|++|||||||+|||+.+++.+.++|++++++|.|||++|||++
T Consensus 387 ~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~ 466 (506)
T PRK13549 387 ESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP 466 (506)
T ss_pred HHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 578889994 368999999999999999999999999999999999999999999999999999877999999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.+ |||++
T Consensus 467 ~~~~~~d~v~ 476 (506)
T PRK13549 467 EVLGLSDRVL 476 (506)
T ss_pred HHHHhCCEEE
Confidence 9987 99985
No 127
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.3e-24 Score=169.15 Aligned_cols=88 Identities=32% Similarity=0.479 Sum_probs=81.1
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcCh
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~ 120 (131)
+.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.+++++++ |.|||++||++
T Consensus 119 ~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~ 198 (277)
T PRK13652 119 SSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL 198 (277)
T ss_pred HHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3578888985 478899999999999999999999999999999999999999999999999998764 89999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
+++.. |||++
T Consensus 199 ~~~~~~~drv~ 209 (277)
T PRK13652 199 DLVPEMADYIY 209 (277)
T ss_pred HHHHHhCCEEE
Confidence 99976 99986
No 128
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.3e-24 Score=169.59 Aligned_cols=87 Identities=31% Similarity=0.421 Sum_probs=81.0
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++
T Consensus 123 ~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~ 202 (279)
T PRK13635 123 QALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD 202 (279)
T ss_pred HHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 577888985 478899999999999999999999999999999999999999999999999999865 899999999999
Q ss_pred HHhcCCccc
Q psy4761 122 EARHAHKVP 130 (131)
Q Consensus 122 ~~~~~dri~ 130 (131)
++..||||+
T Consensus 203 ~~~~~d~i~ 211 (279)
T PRK13635 203 EAAQADRVI 211 (279)
T ss_pred HHHcCCEEE
Confidence 998899985
No 129
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.3e-24 Score=167.98 Aligned_cols=88 Identities=28% Similarity=0.337 Sum_probs=80.7
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcCh
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~ 120 (131)
+.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++||++
T Consensus 129 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~ 208 (265)
T PRK10575 129 EEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI 208 (265)
T ss_pred HHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3577888885 478899999999999999999999999999999999999999999999999998754 89999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
+++.. ||||+
T Consensus 209 ~~i~~~~d~i~ 219 (265)
T PRK10575 209 NMAARYCDYLV 219 (265)
T ss_pred HHHHHhCCEEE
Confidence 99976 99985
No 130
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.6e-24 Score=168.69 Aligned_cols=87 Identities=34% Similarity=0.493 Sum_probs=81.1
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+++++++|.|||++||++++
T Consensus 120 ~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~ 199 (275)
T PRK13639 120 EALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL 199 (275)
T ss_pred HHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 577888985 4788999999999999999999999999999999999999999999999999997679999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. |||++
T Consensus 200 ~~~~~d~i~ 208 (275)
T PRK13639 200 VPVYADKVY 208 (275)
T ss_pred HHHhCCEEE
Confidence 986 99975
No 131
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.91 E-value=2.3e-24 Score=162.70 Aligned_cols=87 Identities=29% Similarity=0.497 Sum_probs=80.2
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.|+++.++ |.|||++||+++
T Consensus 111 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~ 190 (213)
T TIGR01277 111 DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190 (213)
T ss_pred HHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 477888885 478899999999999999999999999999999999999999999999999998754 899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+++
T Consensus 191 ~~~~~~d~v~ 200 (213)
T TIGR01277 191 DARAIASQIA 200 (213)
T ss_pred HHHhhcCeEE
Confidence 9876 99975
No 132
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.5e-24 Score=169.53 Aligned_cols=87 Identities=32% Similarity=0.431 Sum_probs=80.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++
T Consensus 124 ~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 124 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred HHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 567888995 478999999999999999999999999999999999999999999999999999764 899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 204 ~~~~~~dri~ 213 (283)
T PRK13636 204 IVPLYCDNVF 213 (283)
T ss_pred HHHHhCCEEE
Confidence 9986 99985
No 133
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.91 E-value=2.1e-24 Score=160.28 Aligned_cols=80 Identities=35% Similarity=0.501 Sum_probs=73.9
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+|||||++|||||+.+|+++||||||+|||+..++.+.+.|++++++|.|||++||++++
T Consensus 110 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 110 EALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 567888885 4788999999999999999999999999999999999999999999999999997779999999999875
Q ss_pred H
Q psy4761 123 A 123 (131)
Q Consensus 123 ~ 123 (131)
+
T Consensus 190 ~ 190 (190)
T TIGR01166 190 A 190 (190)
T ss_pred C
Confidence 3
No 134
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.1e-24 Score=165.01 Aligned_cols=87 Identities=32% Similarity=0.502 Sum_probs=80.1
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
.+++.++++ ..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|+++++ .|.|||++||++
T Consensus 113 ~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~ 192 (241)
T PRK14250 113 YYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM 192 (241)
T ss_pred HHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH
Confidence 567888885 36888999999999999999999999999999999999999999999999999876 489999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
+++.. ||||+
T Consensus 193 ~~~~~~~d~i~ 203 (241)
T PRK14250 193 EQAKRIGDYTA 203 (241)
T ss_pred HHHHHhCCEEE
Confidence 99887 99985
No 135
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.8e-24 Score=177.28 Aligned_cols=88 Identities=28% Similarity=0.435 Sum_probs=81.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|.++.+ .|+|||++|||++
T Consensus 147 e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 147 DALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred HHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 578889995 47899999999999999999999999999999999999999999999999999874 5899999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 227 ~~~~~~Dri~v 237 (400)
T PRK10070 227 EAMRIGDRIAI 237 (400)
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 136
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=1.3e-24 Score=169.08 Aligned_cols=88 Identities=26% Similarity=0.413 Sum_probs=83.7
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||.|+||++.+..+++++|+++|||||+|||||.+.+.+.+.+.+++++|.|||++||.|+.
T Consensus 113 ~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~ 192 (300)
T COG4152 113 AWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEH 192 (300)
T ss_pred HHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHH
Confidence 578999995 5788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
++. ||++++
T Consensus 193 vEeLCD~llm 202 (300)
T COG4152 193 VEELCDRLLM 202 (300)
T ss_pred HHHHhhhhhe
Confidence 999 999874
No 137
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.91 E-value=3e-24 Score=164.82 Aligned_cols=87 Identities=33% Similarity=0.530 Sum_probs=79.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||+|||||++||+||+.+|+++||||||+|||+..++.+.+.|++++++ |.|||++||+++
T Consensus 136 ~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 215 (236)
T cd03267 136 ELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK 215 (236)
T ss_pred HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 467888885 368899999999999999999999999999999999999999999999999998754 899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+++
T Consensus 216 ~~~~~~d~i~ 225 (236)
T cd03267 216 DIEALARRVL 225 (236)
T ss_pred HHHHhCCEEE
Confidence 9887 99885
No 138
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.7e-24 Score=164.86 Aligned_cols=87 Identities=26% Similarity=0.455 Sum_probs=80.0
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++.. .++++.+||||||||++||||++.+|++|||||||+|||+..++.+.+.+++++++|.|||++||++++
T Consensus 120 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~ 199 (241)
T PRK10895 120 ELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRE 199 (241)
T ss_pred HHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHH
Confidence 5678888853 688899999999999999999999999999999999999999999999999987779999999999998
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+++
T Consensus 200 ~~~~~d~v~ 208 (241)
T PRK10895 200 TLAVCERAY 208 (241)
T ss_pred HHHhcCEEE
Confidence 877 99875
No 139
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.9e-24 Score=169.32 Aligned_cols=87 Identities=30% Similarity=0.376 Sum_probs=79.8
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
.+++.++++ ..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ .|+|||++||++
T Consensus 132 ~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~ 211 (289)
T PRK13645 132 ELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM 211 (289)
T ss_pred HHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 467888884 36889999999999999999999999999999999999999999999999999875 489999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
+++.. |||++
T Consensus 212 ~~~~~~~d~i~ 222 (289)
T PRK13645 212 DQVLRIADEVI 222 (289)
T ss_pred HHHHHhCCEEE
Confidence 99876 99985
No 140
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.91 E-value=2.4e-24 Score=180.14 Aligned_cols=88 Identities=24% Similarity=0.354 Sum_probs=81.9
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++||+||+.+|++|||||||+|||+..++.+.+.|++++++|.|||++||++++
T Consensus 118 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~ 197 (490)
T PRK10938 118 QLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDE 197 (490)
T ss_pred HHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 577888995 4789999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
+.+ ||++++
T Consensus 198 ~~~~~d~v~~ 207 (490)
T PRK10938 198 IPDFVQFAGV 207 (490)
T ss_pred HHhhCCEEEE
Confidence 987 999863
No 141
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.91 E-value=2.5e-24 Score=167.16 Aligned_cols=87 Identities=26% Similarity=0.462 Sum_probs=80.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|++|||||||+|||+..++.+.+.|+++++ .|.|||++||+++
T Consensus 135 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~ 214 (262)
T PRK09984 135 QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD 214 (262)
T ss_pred HHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 577888885 47889999999999999999999999999999999999999999999999999975 4899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 215 ~~~~~~d~i~ 224 (262)
T PRK09984 215 YALRYCERIV 224 (262)
T ss_pred HHHHhCCEEE
Confidence 9876 99985
No 142
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.9e-24 Score=180.42 Aligned_cols=87 Identities=22% Similarity=0.324 Sum_probs=81.6
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++++.|.|||++|||++
T Consensus 378 ~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~ 457 (501)
T PRK11288 378 RFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP 457 (501)
T ss_pred HHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 577889983 478999999999999999999999999999999999999999999999999999878999999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 458 ~~~~~~d~i~ 467 (501)
T PRK11288 458 EVLGVADRIV 467 (501)
T ss_pred HHHhhCCEEE
Confidence 9987 99986
No 143
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.2e-24 Score=167.18 Aligned_cols=88 Identities=24% Similarity=0.303 Sum_probs=80.9
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
+.+++.+++. ..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|.++.+ .|.|||++||++
T Consensus 125 ~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~ 204 (265)
T PRK10253 125 TKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL 204 (265)
T ss_pred HHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3577888885 47899999999999999999999999999999999999999999999999999876 489999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
+++.. |||++
T Consensus 205 ~~~~~~~d~i~ 215 (265)
T PRK10253 205 NQACRYASHLI 215 (265)
T ss_pred HHHHHhCCEEE
Confidence 99877 99985
No 144
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.91 E-value=2.5e-24 Score=162.77 Aligned_cols=86 Identities=34% Similarity=0.650 Sum_probs=79.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.|+++++ +.|||++||++++
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~ 194 (220)
T cd03263 116 LLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDE 194 (220)
T ss_pred HHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHH
Confidence 577888885 46888999999999999999999999999999999999999999999999999865 5999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+++
T Consensus 195 ~~~~~d~i~ 203 (220)
T cd03263 195 AEALCDRIA 203 (220)
T ss_pred HHHhcCEEE
Confidence 987 99985
No 145
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.4e-24 Score=180.19 Aligned_cols=87 Identities=23% Similarity=0.371 Sum_probs=81.5
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|++++++|.|||+||||+++
T Consensus 128 ~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~ 207 (510)
T PRK09700 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAE 207 (510)
T ss_pred HHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 577888995 4789999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. |||++
T Consensus 208 ~~~~~d~v~ 216 (510)
T PRK09700 208 IRRICDRYT 216 (510)
T ss_pred HHHhCCEEE
Confidence 987 99986
No 146
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.91 E-value=4.1e-24 Score=164.60 Aligned_cols=86 Identities=30% Similarity=0.438 Sum_probs=78.7
Q ss_pred HHHHhcCCC----C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP----D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~----~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. . .++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||
T Consensus 123 ~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH 201 (247)
T TIGR00972 123 ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTH 201 (247)
T ss_pred HHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEec
Confidence 567888885 3 5788999999999999999999999999999999999999999999999999876 489999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 202 ~~~~~~~~~d~i~ 214 (247)
T TIGR00972 202 NMQQAARISDRTA 214 (247)
T ss_pred CHHHHHHhCCEEE
Confidence 9999977 99985
No 147
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.91 E-value=2.7e-24 Score=181.17 Aligned_cols=88 Identities=28% Similarity=0.469 Sum_probs=82.0
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++
T Consensus 385 ~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~ 464 (510)
T PRK15439 385 RYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE 464 (510)
T ss_pred HHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 577888995 378999999999999999999999999999999999999999999999999999877999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. |||+++
T Consensus 465 ~i~~~~d~i~~ 475 (510)
T PRK15439 465 EIEQMADRVLV 475 (510)
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 148
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.91 E-value=3.9e-24 Score=165.62 Aligned_cols=87 Identities=31% Similarity=0.385 Sum_probs=80.7
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|++++++|.|||++||++++
T Consensus 120 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (256)
T TIGR03873 120 RALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNL 199 (256)
T ss_pred HHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 567888885 4788999999999999999999999999999999999999999999999999997778999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||||+
T Consensus 200 ~~~~~d~i~ 208 (256)
T TIGR03873 200 AASYCDHVV 208 (256)
T ss_pred HHHhCCEEE
Confidence 976 99986
No 149
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=4.1e-24 Score=166.09 Aligned_cols=87 Identities=28% Similarity=0.381 Sum_probs=80.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEE
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMM------HSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCII 115 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~------~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~ 115 (131)
.+++.+++. ..++++.+||||||||++|||||+ .+|++|||||||+|||+..++.+.+.|+++. +.|.|||+
T Consensus 117 ~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 196 (258)
T PRK13548 117 AALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIV 196 (258)
T ss_pred HHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 577888885 478899999999999999999999 5999999999999999999999999999987 67899999
Q ss_pred EEcChhHHhc-CCccc
Q psy4761 116 TTHYIEEARH-AHKVP 130 (131)
Q Consensus 116 vtH~~~~~~~-~dri~ 130 (131)
+||+++++.. ||||+
T Consensus 197 ~sH~~~~~~~~~d~i~ 212 (258)
T PRK13548 197 VLHDLNLAARYADRIV 212 (258)
T ss_pred EECCHHHHHHhcCEEE
Confidence 9999999986 99985
No 150
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=7.2e-24 Score=157.68 Aligned_cols=87 Identities=24% Similarity=0.348 Sum_probs=80.5
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHS--PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~--p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
+.++.+++.. .++++.+||+|||||++||||++.+ |+++||||||+|||+..++.+.+.++++++.|.|||++||+
T Consensus 69 ~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~ 148 (176)
T cd03238 69 QFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148 (176)
T ss_pred HHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4678888852 6889999999999999999999999 99999999999999999999999999987779999999999
Q ss_pred hhHHhcCCccc
Q psy4761 120 IEEARHAHKVP 130 (131)
Q Consensus 120 ~~~~~~~dri~ 130 (131)
++++..|||++
T Consensus 149 ~~~~~~~d~i~ 159 (176)
T cd03238 149 LDVLSSADWII 159 (176)
T ss_pred HHHHHhCCEEE
Confidence 99987799985
No 151
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.91 E-value=3.7e-24 Score=165.92 Aligned_cols=87 Identities=31% Similarity=0.457 Sum_probs=80.1
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcCh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~ 120 (131)
++++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.++++.++ |.|||++||++
T Consensus 133 ~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~ 212 (258)
T PRK11701 133 DWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred HHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 577888884 368899999999999999999999999999999999999999999999999998754 89999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
+++.. ||+|+
T Consensus 213 ~~~~~~~d~i~ 223 (258)
T PRK11701 213 AVARLLAHRLL 223 (258)
T ss_pred HHHHHhcCEEE
Confidence 99986 99985
No 152
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.91 E-value=3.4e-24 Score=179.99 Aligned_cols=88 Identities=22% Similarity=0.394 Sum_probs=81.7
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
++++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|+++++.|.|||+||||+++
T Consensus 124 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~ 203 (501)
T PRK10762 124 KLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKE 203 (501)
T ss_pred HHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 577888996 4788999999999999999999999999999999999999999999999999997779999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
+.. ||||++
T Consensus 204 ~~~~~d~i~~ 213 (501)
T PRK10762 204 IFEICDDVTV 213 (501)
T ss_pred HHHhCCEEEE
Confidence 987 999863
No 153
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.1e-24 Score=165.14 Aligned_cols=86 Identities=29% Similarity=0.493 Sum_probs=77.0
Q ss_pred HHHhc-CCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 45 ISLLN-GLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 45 ~~~~~-~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+++.+ ++. ..++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+.|++++++|.|||++||++++
T Consensus 120 ~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (237)
T PRK11614 120 VYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQ 199 (237)
T ss_pred HHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH
Confidence 44555 353 3577899999999999999999999999999999999999999999999999987779999999999998
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. |||+.
T Consensus 200 ~~~~~d~i~ 208 (237)
T PRK11614 200 ALKLADRGY 208 (237)
T ss_pred HHhhCCEEE
Confidence 877 99985
No 154
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.91 E-value=3.8e-24 Score=165.12 Aligned_cols=87 Identities=31% Similarity=0.431 Sum_probs=79.9
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
.+++.+++. ..++.+.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ .|.|||+|||++
T Consensus 130 ~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~ 209 (253)
T TIGR02323 130 DWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL 209 (253)
T ss_pred HHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 567888884 46889999999999999999999999999999999999999999999999999865 489999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
+++.. ||+++
T Consensus 210 ~~~~~~~d~~~ 220 (253)
T TIGR02323 210 GVARLLAQRLL 220 (253)
T ss_pred HHHHHhcCEEE
Confidence 99986 99875
No 155
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.5e-24 Score=165.58 Aligned_cols=86 Identities=29% Similarity=0.396 Sum_probs=77.9
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+|||||+||++|||||+.+|+++||||||+|||+.++..+.+.|+++.+ |.|||++||
T Consensus 133 ~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH 211 (258)
T PRK14268 133 NALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTH 211 (258)
T ss_pred HHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEEC
Confidence 467777762 25788999999999999999999999999999999999999999999999999864 799999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 212 ~~~~~~~~~d~i~ 224 (258)
T PRK14268 212 NMQQAARISDYTG 224 (258)
T ss_pred CHHHHHHhCCEEE
Confidence 9999977 99985
No 156
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.91 E-value=5.2e-24 Score=164.91 Aligned_cols=88 Identities=23% Similarity=0.311 Sum_probs=80.1
Q ss_pred HHHHHhcCCCC----CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEE
Q psy4761 43 WYISLLNGLPD----PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITT 117 (131)
Q Consensus 43 ~~~~~~~~l~~----~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vt 117 (131)
+.+++.+++.. .++++.+||+|||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ .|.|||++|
T Consensus 119 ~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~s 198 (254)
T PRK10418 119 TAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVT 198 (254)
T ss_pred HHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 35778888853 4788999999999999999999999999999999999999999999999999875 489999999
Q ss_pred cChhHHhc-CCccc
Q psy4761 118 HYIEEARH-AHKVP 130 (131)
Q Consensus 118 H~~~~~~~-~dri~ 130 (131)
|+++++.. |||++
T Consensus 199 H~~~~~~~~~d~v~ 212 (254)
T PRK10418 199 HDMGVVARLADDVA 212 (254)
T ss_pred cCHHHHHHhCCEEE
Confidence 99999976 99875
No 157
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.91 E-value=3.8e-24 Score=167.05 Aligned_cols=87 Identities=23% Similarity=0.327 Sum_probs=80.2
Q ss_pred HHHHhcCCC-C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcCh
Q psy4761 44 YISLLNGLP-D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~ 120 (131)
.+++.+++. . .++++.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|++++++ |.|||++||++
T Consensus 131 ~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~ 210 (267)
T PRK15112 131 ETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL 210 (267)
T ss_pred HHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH
Confidence 578888983 3 67789999999999999999999999999999999999999999999999998754 89999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
+++.. |||++
T Consensus 211 ~~~~~~~d~i~ 221 (267)
T PRK15112 211 GMMKHISDQVL 221 (267)
T ss_pred HHHHHhcCEEE
Confidence 99987 99985
No 158
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.91 E-value=4.3e-24 Score=166.44 Aligned_cols=87 Identities=30% Similarity=0.492 Sum_probs=80.2
Q ss_pred HHHHhcCCC-C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcCh
Q psy4761 44 YISLLNGLP-D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~ 120 (131)
.+++.+++. . .++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++ |.|||++||++
T Consensus 132 ~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 211 (265)
T TIGR02769 132 ELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL 211 (265)
T ss_pred HHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 577888984 3 68899999999999999999999999999999999999999999999999998764 89999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
+.+.. ||+++
T Consensus 212 ~~~~~~~d~i~ 222 (265)
T TIGR02769 212 RLVQSFCQRVA 222 (265)
T ss_pred HHHHHHhcEEE
Confidence 99986 99985
No 159
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=5.6e-24 Score=161.04 Aligned_cols=87 Identities=25% Similarity=0.287 Sum_probs=80.6
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+..++.+.+.+++++++|.|||++||++++
T Consensus 120 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (214)
T PRK13543 120 SALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYA 199 (214)
T ss_pred HHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 567888885 4688999999999999999999999999999999999999999999999999988778999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.+ |||+.
T Consensus 200 ~~~~~~~i~ 208 (214)
T PRK13543 200 APPVRTRML 208 (214)
T ss_pred hhhhcceEE
Confidence 987 99875
No 160
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=7.3e-24 Score=162.25 Aligned_cols=88 Identities=28% Similarity=0.379 Sum_probs=80.2
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSP--LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p--~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
.+++.+++.. .++++.+||||||||++|||||+.+| +++||||||+|||+..+..+.+.+++++++|.|||++||+
T Consensus 119 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~ 198 (226)
T cd03270 119 GFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHD 198 (226)
T ss_pred HHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 4677888853 68899999999999999999999998 5999999999999999999999999987779999999999
Q ss_pred hhHHhcCCcccC
Q psy4761 120 IEEARHAHKVPI 131 (131)
Q Consensus 120 ~~~~~~~dri~~ 131 (131)
++++..|||+++
T Consensus 199 ~~~~~~~d~i~~ 210 (226)
T cd03270 199 EDTIRAADHVID 210 (226)
T ss_pred HHHHHhCCEEEE
Confidence 999877999863
No 161
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.4e-24 Score=179.48 Aligned_cols=88 Identities=28% Similarity=0.466 Sum_probs=81.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
++++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|.+++++|.|||++|||+++
T Consensus 126 ~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~ 205 (506)
T PRK13549 126 KLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNE 205 (506)
T ss_pred HHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH
Confidence 578888995 4788999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
+.. |||+++
T Consensus 206 ~~~~~d~v~~ 215 (506)
T PRK13549 206 VKAISDTICV 215 (506)
T ss_pred HHHhcCEEEE
Confidence 987 999863
No 162
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.91 E-value=4.1e-24 Score=166.01 Aligned_cols=87 Identities=21% Similarity=0.316 Sum_probs=80.2
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++.. .++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|++++++ |.|||++||+++
T Consensus 103 ~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~ 182 (251)
T PRK09544 103 PALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH 182 (251)
T ss_pred HHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 5678888854 68899999999999999999999999999999999999999999999999998765 899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+++
T Consensus 183 ~i~~~~d~i~ 192 (251)
T PRK09544 183 LVMAKTDEVL 192 (251)
T ss_pred HHHHhCCEEE
Confidence 9976 99985
No 163
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.2e-24 Score=167.15 Aligned_cols=88 Identities=26% Similarity=0.365 Sum_probs=81.0
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|++++++ |.|||++||+++
T Consensus 123 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 123 EALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202 (277)
T ss_pred HHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 567888885 478899999999999999999999999999999999999999999999999999765 999999999999
Q ss_pred HHhcCCcccC
Q psy4761 122 EARHAHKVPI 131 (131)
Q Consensus 122 ~~~~~dri~~ 131 (131)
++..||+|++
T Consensus 203 ~~~~~d~i~~ 212 (277)
T PRK13642 203 EAASSDRILV 212 (277)
T ss_pred HHHhCCEEEE
Confidence 9988999863
No 164
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.91 E-value=4.4e-24 Score=178.99 Aligned_cols=87 Identities=28% Similarity=0.407 Sum_probs=81.3
Q ss_pred HHHHhcCCC-C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++. . .++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.+++++++|.|||++|||++
T Consensus 385 ~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~ 464 (500)
T TIGR02633 385 SAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA 464 (500)
T ss_pred HHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 577888995 3 68999999999999999999999999999999999999999999999999999877999999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 465 ~~~~~~d~v~ 474 (500)
T TIGR02633 465 EVLGLSDRVL 474 (500)
T ss_pred HHHHhCCEEE
Confidence 9987 99986
No 165
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.7e-24 Score=163.66 Aligned_cols=87 Identities=29% Similarity=0.414 Sum_probs=78.3
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|+++. +|.|||++||
T Consensus 125 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH 203 (250)
T PRK14245 125 ETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTH 203 (250)
T ss_pred HHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeC
Confidence 567778873 2578899999999999999999999999999999999999999999999999985 4799999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
+++++.. |||+++
T Consensus 204 ~~~~~~~~~d~v~~ 217 (250)
T PRK14245 204 NMQQAARVSDKTAF 217 (250)
T ss_pred CHHHHHhhCCEEEE
Confidence 9999976 999863
No 166
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.91 E-value=4.8e-24 Score=179.07 Aligned_cols=88 Identities=27% Similarity=0.463 Sum_probs=81.8
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++|.|||++|||++
T Consensus 377 ~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~ 456 (501)
T PRK10762 377 DFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP 456 (501)
T ss_pred HHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 577888994 478999999999999999999999999999999999999999999999999999877999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. |||+++
T Consensus 457 ~~~~~~d~v~~ 467 (501)
T PRK10762 457 EVLGMSDRILV 467 (501)
T ss_pred HHHhhCCEEEE
Confidence 9987 999863
No 167
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=6e-24 Score=165.93 Aligned_cols=87 Identities=28% Similarity=0.358 Sum_probs=80.4
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+..++.+.+.+++++++ |.|||++||+++
T Consensus 125 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~ 204 (269)
T PRK13648 125 EALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS 204 (269)
T ss_pred HHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch
Confidence 567888885 478899999999999999999999999999999999999999999999999998754 899999999999
Q ss_pred HHhcCCccc
Q psy4761 122 EARHAHKVP 130 (131)
Q Consensus 122 ~~~~~dri~ 130 (131)
++..||||+
T Consensus 205 ~~~~~d~i~ 213 (269)
T PRK13648 205 EAMEADHVI 213 (269)
T ss_pred HHhcCCEEE
Confidence 998899985
No 168
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.91 E-value=4.1e-24 Score=180.49 Aligned_cols=88 Identities=31% Similarity=0.462 Sum_probs=80.7
Q ss_pred HHHHhcCCCC----CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEc
Q psy4761 44 YISLLNGLPD----PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~----~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH 118 (131)
++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++ |.|||+|||
T Consensus 136 ~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtH 215 (529)
T PRK15134 136 NCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITH 215 (529)
T ss_pred HHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence 5778889853 47899999999999999999999999999999999999999999999999999764 899999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
|++++.. ||||++
T Consensus 216 d~~~~~~~~dri~~ 229 (529)
T PRK15134 216 NLSIVRKLADRVAV 229 (529)
T ss_pred cHHHHHHhcCEEEE
Confidence 9999987 999863
No 169
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=5.9e-24 Score=160.18 Aligned_cols=87 Identities=28% Similarity=0.257 Sum_probs=79.2
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.++++.+++. ..++++++||+|||||++||||++.+|+++||||||+|||+.+++.+.+.|++++++|.|||++||+++
T Consensus 109 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 188 (207)
T PRK13539 109 AAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188 (207)
T ss_pred HHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3578888885 367889999999999999999999999999999999999999999999999998777999999999999
Q ss_pred HHhcCCccc
Q psy4761 122 EARHAHKVP 130 (131)
Q Consensus 122 ~~~~~dri~ 130 (131)
++.. |+++
T Consensus 189 ~~~~-~~~~ 196 (207)
T PRK13539 189 GLPG-AREL 196 (207)
T ss_pred hhcc-CcEE
Confidence 9887 7653
No 170
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.6e-24 Score=163.44 Aligned_cols=86 Identities=29% Similarity=0.406 Sum_probs=77.2
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|+++++ |.|||++||
T Consensus 128 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH 206 (253)
T PRK14242 128 RSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTH 206 (253)
T ss_pred HHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEe
Confidence 456777763 24778999999999999999999999999999999999999999999999999854 789999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 207 ~~~~~~~~~d~v~ 219 (253)
T PRK14242 207 NMQQAARVSDVTA 219 (253)
T ss_pred cHHHHHHhCCEEE
Confidence 9999976 99985
No 171
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.3e-24 Score=171.74 Aligned_cols=88 Identities=26% Similarity=0.460 Sum_probs=82.4
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+.+++|+. ..+++|.+|||||||||+|+|||+..|++|+||||.++||...+++++-.+.+++++ +.-|++|||.++
T Consensus 111 ~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~ 190 (352)
T COG4148 111 QLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLD 190 (352)
T ss_pred HHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHH
Confidence 578899995 589999999999999999999999999999999999999999999999999999855 899999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.+ ||+|++
T Consensus 191 Ev~RLAd~vV~ 201 (352)
T COG4148 191 EVLRLADRVVV 201 (352)
T ss_pred HHHhhhheEEE
Confidence 9999 999863
No 172
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.90 E-value=6.1e-24 Score=164.04 Aligned_cols=87 Identities=30% Similarity=0.500 Sum_probs=80.0
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++.+.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++.++ |.|+|++||+++
T Consensus 129 ~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 208 (252)
T TIGR03005 129 ELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG 208 (252)
T ss_pred HHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 567888885 468889999999999999999999999999999999999999999999999998764 899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 209 ~~~~~~d~i~ 218 (252)
T TIGR03005 209 FAREFADRVC 218 (252)
T ss_pred HHHHhcCEEE
Confidence 9976 99985
No 173
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.90 E-value=6.7e-24 Score=177.88 Aligned_cols=88 Identities=26% Similarity=0.443 Sum_probs=80.8
Q ss_pred HHHHhcCCCC-C-CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLPD-P-NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~~-~-~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++.. . ++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|++++++|.|||++|||++
T Consensus 123 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~ 202 (500)
T TIGR02633 123 NLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN 202 (500)
T ss_pred HHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 5778889853 3 5779999999999999999999999999999999999999999999999999877999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 203 ~~~~~~d~i~~ 213 (500)
T TIGR02633 203 EVKAVCDTICV 213 (500)
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 174
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.90 E-value=7.7e-24 Score=161.84 Aligned_cols=76 Identities=30% Similarity=0.534 Sum_probs=71.7
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+.|+++. +|.|||++||+++++..||+++
T Consensus 132 ~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~d~v~ 207 (237)
T cd03252 132 VGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKNADRII 207 (237)
T ss_pred hhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEE
Confidence 467899999999999999999999999999999999999999999999999986 4899999999999997799985
No 175
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.90 E-value=1e-23 Score=162.00 Aligned_cols=87 Identities=25% Similarity=0.260 Sum_probs=77.3
Q ss_pred HHHHhcCCC--CCCCCcC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 44 YISLLNGLP--DPNSLCG-QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~-~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+++.++++ ..++++. +||||||||++||||++.+|++|||||||+|||+.+++.+.+.|+++++.|.|||++|||+
T Consensus 126 ~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~ 205 (248)
T PRK09580 126 EKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ 205 (248)
T ss_pred HHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 456777774 2556665 7999999999999999999999999999999999999999999999877789999999999
Q ss_pred hHHhc--CCccc
Q psy4761 121 EEARH--AHKVP 130 (131)
Q Consensus 121 ~~~~~--~dri~ 130 (131)
+++.. ||+|+
T Consensus 206 ~~~~~~~~d~i~ 217 (248)
T PRK09580 206 RILDYIKPDYVH 217 (248)
T ss_pred HHHHhhhCCEEE
Confidence 99987 79875
No 176
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.90 E-value=8.2e-24 Score=161.22 Aligned_cols=87 Identities=26% Similarity=0.310 Sum_probs=80.4
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
.+++.+++. ..++++.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+.|+++.+ .|.|||++||++
T Consensus 119 ~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~ 198 (225)
T PRK10247 119 DDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK 198 (225)
T ss_pred HHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh
Confidence 577888984 36889999999999999999999999999999999999999999999999999875 489999999999
Q ss_pred hHHhcCCccc
Q psy4761 121 EEARHAHKVP 130 (131)
Q Consensus 121 ~~~~~~dri~ 130 (131)
+++..|||++
T Consensus 199 ~~~~~~d~i~ 208 (225)
T PRK10247 199 DEINHADKVI 208 (225)
T ss_pred HHHHhCCEEE
Confidence 9998899986
No 177
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.90 E-value=8e-24 Score=163.65 Aligned_cols=88 Identities=25% Similarity=0.411 Sum_probs=80.2
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEE
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMH-------SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCII 115 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~-------~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~ 115 (131)
.+++.+++. ..++++.+||+|||||++|||||+. +|+++||||||+|||+..++.+.+.|++++++|.|||+
T Consensus 109 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~ 188 (248)
T PRK03695 109 EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVM 188 (248)
T ss_pred HHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 577888885 4688999999999999999999997 67999999999999999999999999998777999999
Q ss_pred EEcChhHHhc-CCcccC
Q psy4761 116 TTHYIEEARH-AHKVPI 131 (131)
Q Consensus 116 vtH~~~~~~~-~dri~~ 131 (131)
+||+++++.. ||++++
T Consensus 189 ~sH~~~~~~~~~d~i~~ 205 (248)
T PRK03695 189 SSHDLNHTLRHADRVWL 205 (248)
T ss_pred EecCHHHHHHhCCEEEE
Confidence 9999998876 999863
No 178
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.9e-24 Score=183.58 Aligned_cols=88 Identities=26% Similarity=0.416 Sum_probs=81.6
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcCh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~ 120 (131)
++++.++++ ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.++|++++++ |.|||+||||+
T Consensus 445 ~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl 524 (623)
T PRK10261 445 WLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM 524 (623)
T ss_pred HHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 578889995 378999999999999999999999999999999999999999999999999999764 89999999999
Q ss_pred hHHhc-CCcccC
Q psy4761 121 EEARH-AHKVPI 131 (131)
Q Consensus 121 ~~~~~-~dri~~ 131 (131)
+++.+ ||||++
T Consensus 525 ~~v~~~~dri~v 536 (623)
T PRK10261 525 AVVERISHRVAV 536 (623)
T ss_pred HHHHHhCCEEEE
Confidence 99987 999864
No 179
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.2e-24 Score=178.32 Aligned_cols=88 Identities=23% Similarity=0.368 Sum_probs=80.9
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++||||++.+|++|||||||+|||+..++.+++.++++++.|.|||++|||++
T Consensus 373 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~ 452 (491)
T PRK10982 373 WVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452 (491)
T ss_pred HHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH
Confidence 466777884 368999999999999999999999999999999999999999999999999999878999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. |||+++
T Consensus 453 ~~~~~~d~v~~ 463 (491)
T PRK10982 453 ELLGITDRILV 463 (491)
T ss_pred HHHhhCCEEEE
Confidence 9987 999863
No 180
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.7e-24 Score=183.18 Aligned_cols=88 Identities=28% Similarity=0.419 Sum_probs=81.0
Q ss_pred HHHHhcCCCC----CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEc
Q psy4761 44 YISLLNGLPD----PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~----~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH 118 (131)
++++.+|++. .++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+++++++++ |.|||+|||
T Consensus 148 ~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itH 227 (623)
T PRK10261 148 RMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITH 227 (623)
T ss_pred HHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 5788889953 58899999999999999999999999999999999999999999999999999754 999999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
|++++.+ ||||++
T Consensus 228 dl~~~~~~adri~v 241 (623)
T PRK10261 228 DMGVVAEIADRVLV 241 (623)
T ss_pred CHHHHHHhCCEEEE
Confidence 9999987 999864
No 181
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.1e-24 Score=163.04 Aligned_cols=86 Identities=30% Similarity=0.446 Sum_probs=78.1
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++.+ |.|+|++||
T Consensus 125 ~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH 203 (250)
T PRK14247 125 WALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTH 203 (250)
T ss_pred HHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 567778873 25788999999999999999999999999999999999999999999999999864 799999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. ||+++
T Consensus 204 ~~~~~~~~~d~i~ 216 (250)
T PRK14247 204 FPQQAARISDYVA 216 (250)
T ss_pred CHHHHHHhcCEEE
Confidence 9999876 99985
No 182
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.5e-24 Score=177.37 Aligned_cols=87 Identities=22% Similarity=0.316 Sum_probs=81.0
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++++.|.|||++|||+++
T Consensus 117 ~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~ 196 (491)
T PRK10982 117 AIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEE 196 (491)
T ss_pred HHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 567888885 4788999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. |||++
T Consensus 197 ~~~~~d~i~ 205 (491)
T PRK10982 197 IFQLCDEIT 205 (491)
T ss_pred HHHhCCEEE
Confidence 987 99986
No 183
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.7e-24 Score=177.82 Aligned_cols=87 Identities=22% Similarity=0.339 Sum_probs=81.2
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||+++
T Consensus 123 ~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~ 202 (501)
T PRK11288 123 EQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEE 202 (501)
T ss_pred HHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 577888985 4688999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||||+
T Consensus 203 ~~~~~d~i~ 211 (501)
T PRK11288 203 IFALCDAIT 211 (501)
T ss_pred HHHhCCEEE
Confidence 987 99986
No 184
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=8.1e-24 Score=166.55 Aligned_cols=87 Identities=33% Similarity=0.425 Sum_probs=80.6
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||+||+||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++
T Consensus 126 ~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~ 205 (282)
T PRK13640 126 DVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID 205 (282)
T ss_pred HHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 467888985 478999999999999999999999999999999999999999999999999998754 899999999999
Q ss_pred HHhcCCccc
Q psy4761 122 EARHAHKVP 130 (131)
Q Consensus 122 ~~~~~dri~ 130 (131)
++..|||++
T Consensus 206 ~~~~~d~i~ 214 (282)
T PRK13640 206 EANMADQVL 214 (282)
T ss_pred HHHhCCEEE
Confidence 997799985
No 185
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.90 E-value=1.1e-23 Score=162.36 Aligned_cols=87 Identities=24% Similarity=0.235 Sum_probs=78.7
Q ss_pred HHHHhcCCC--CCCCCcC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 44 YISLLNGLP--DPNSLCG-QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~-~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+++.+++. ..++++. +||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|++++++|.|||++||++
T Consensus 132 ~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~ 211 (252)
T CHL00131 132 EKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ 211 (252)
T ss_pred HHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 467888885 3577776 5999999999999999999999999999999999999999999999877789999999999
Q ss_pred hHHhc--CCccc
Q psy4761 121 EEARH--AHKVP 130 (131)
Q Consensus 121 ~~~~~--~dri~ 130 (131)
+++.. ||+++
T Consensus 212 ~~~~~~~~d~i~ 223 (252)
T CHL00131 212 RLLDYIKPDYVH 223 (252)
T ss_pred HHHHhhhCCEEE
Confidence 99975 79875
No 186
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.90 E-value=5.9e-24 Score=179.54 Aligned_cols=88 Identities=30% Similarity=0.499 Sum_probs=81.2
Q ss_pred HHHHhcCCC-C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcCh
Q psy4761 44 YISLLNGLP-D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~ 120 (131)
.+++.+++. . .++++.+||||||||++|||||+.+|++|||||||+|||+..++.+++.|++++++ |.|||+||||+
T Consensus 407 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~ 486 (529)
T PRK15134 407 AVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486 (529)
T ss_pred HHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence 577888995 3 68899999999999999999999999999999999999999999999999999764 89999999999
Q ss_pred hHHhc-CCcccC
Q psy4761 121 EEARH-AHKVPI 131 (131)
Q Consensus 121 ~~~~~-~dri~~ 131 (131)
+++.. ||||++
T Consensus 487 ~~~~~~~d~i~~ 498 (529)
T PRK15134 487 HVVRALCHQVIV 498 (529)
T ss_pred HHHHHhcCeEEE
Confidence 99987 999863
No 187
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.90 E-value=6e-24 Score=179.04 Aligned_cols=88 Identities=24% Similarity=0.450 Sum_probs=80.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.++++ ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++.+ .|.|||+||||++
T Consensus 151 ~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 151 DLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 567888995 36889999999999999999999999999999999999999999999999999865 5899999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
.+.. ||||++
T Consensus 231 ~~~~~~d~i~~ 241 (520)
T TIGR03269 231 VIEDLSDKAIW 241 (520)
T ss_pred HHHHhcCEEEE
Confidence 9987 999863
No 188
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.90 E-value=1e-23 Score=160.17 Aligned_cols=86 Identities=26% Similarity=0.387 Sum_probs=77.4
Q ss_pred HHHHhc--CCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 44 YISLLN--GLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~--~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+++.+ ++. ..++++.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.++++++ +.|||++||++
T Consensus 131 ~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~ 209 (226)
T cd03248 131 SFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRL 209 (226)
T ss_pred HHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCH
Confidence 345666 664 46788999999999999999999999999999999999999999999999999865 68999999999
Q ss_pred hHHhcCCccc
Q psy4761 121 EEARHAHKVP 130 (131)
Q Consensus 121 ~~~~~~dri~ 130 (131)
+++..||+|+
T Consensus 210 ~~~~~~d~i~ 219 (226)
T cd03248 210 STVERADQIL 219 (226)
T ss_pred HHHHhCCEEE
Confidence 9998899985
No 189
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=9.8e-24 Score=161.30 Aligned_cols=87 Identities=32% Similarity=0.463 Sum_probs=80.4
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++.+.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+.+++++++ |.|||++||+++
T Consensus 113 ~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~ 192 (232)
T cd03300 113 EALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE 192 (232)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 577888995 478899999999999999999999999999999999999999999999999998764 899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 193 ~~~~~~d~i~ 202 (232)
T cd03300 193 EALTMSDRIA 202 (232)
T ss_pred HHHHhcCEEE
Confidence 9876 99985
No 190
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=8.9e-24 Score=158.76 Aligned_cols=84 Identities=27% Similarity=0.247 Sum_probs=77.6
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.|++++++|.|||++||++++
T Consensus 112 ~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 191 (204)
T PRK13538 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP 191 (204)
T ss_pred HHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh
Confidence 577888985 4688999999999999999999999999999999999999999999999999987778999999999999
Q ss_pred HhcCC
Q psy4761 123 ARHAH 127 (131)
Q Consensus 123 ~~~~d 127 (131)
+..|+
T Consensus 192 i~~~~ 196 (204)
T PRK13538 192 VASDK 196 (204)
T ss_pred hccCC
Confidence 98753
No 191
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.90 E-value=1.2e-23 Score=157.88 Aligned_cols=87 Identities=28% Similarity=0.267 Sum_probs=78.5
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+.|++++++|.|+|++||+...
T Consensus 108 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~ 187 (201)
T cd03231 108 EALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG 187 (201)
T ss_pred HHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh
Confidence 567888885 4688999999999999999999999999999999999999999999999999987778999999998877
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
... |++++
T Consensus 188 ~~~~~~~~~ 196 (201)
T cd03231 188 LSEAGAREL 196 (201)
T ss_pred hhhccceeE
Confidence 765 77764
No 192
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=9.4e-24 Score=163.17 Aligned_cols=86 Identities=30% Similarity=0.434 Sum_probs=76.9
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++++ ++.|||++||
T Consensus 129 ~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH 207 (254)
T PRK14273 129 QSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTH 207 (254)
T ss_pred HHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeC
Confidence 455666652 2578899999999999999999999999999999999999999999999999986 4789999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 208 ~~~~~~~~~d~i~ 220 (254)
T PRK14273 208 NMQQAGRISDRTA 220 (254)
T ss_pred CHHHHHHhCCEEE
Confidence 9999877 99985
No 193
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=8.9e-24 Score=165.26 Aligned_cols=87 Identities=31% Similarity=0.355 Sum_probs=80.0
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+++.|++++++ |.|||++||+++
T Consensus 125 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 204 (271)
T PRK13632 125 DLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD 204 (271)
T ss_pred HHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh
Confidence 467888885 478899999999999999999999999999999999999999999999999998765 599999999999
Q ss_pred HHhcCCccc
Q psy4761 122 EARHAHKVP 130 (131)
Q Consensus 122 ~~~~~dri~ 130 (131)
++..||+++
T Consensus 205 ~~~~~d~v~ 213 (271)
T PRK13632 205 EAILADKVI 213 (271)
T ss_pred HHhhCCEEE
Confidence 987799875
No 194
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.90 E-value=8.7e-24 Score=178.06 Aligned_cols=88 Identities=20% Similarity=0.396 Sum_probs=80.5
Q ss_pred HHHHhcCCCC------CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEE
Q psy4761 44 YISLLNGLPD------PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIIT 116 (131)
Q Consensus 44 ~~~~~~~l~~------~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~v 116 (131)
.+++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++ |.|||++
T Consensus 405 ~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~v 484 (520)
T TIGR03269 405 ITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIV 484 (520)
T ss_pred HHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 4678888852 57899999999999999999999999999999999999999999999999999754 8999999
Q ss_pred EcChhHHhc-CCcccC
Q psy4761 117 THYIEEARH-AHKVPI 131 (131)
Q Consensus 117 tH~~~~~~~-~dri~~ 131 (131)
|||++++.. |||+++
T Consensus 485 sHd~~~~~~~~d~i~~ 500 (520)
T TIGR03269 485 SHDMDFVLDVCDRAAL 500 (520)
T ss_pred eCCHHHHHHhCCEEEE
Confidence 999999987 999863
No 195
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=161.82 Aligned_cols=86 Identities=29% Similarity=0.472 Sum_probs=77.9
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||+|||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++. +|.|||++||
T Consensus 128 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH 206 (251)
T PRK14244 128 KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTH 206 (251)
T ss_pred HHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeC
Confidence 567888874 2467889999999999999999999999999999999999999999999999985 4899999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 207 ~~~~~~~~~d~i~ 219 (251)
T PRK14244 207 SMKQAKKVSDRVA 219 (251)
T ss_pred CHHHHHhhcCEEE
Confidence 9999987 99986
No 196
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.3e-23 Score=161.02 Aligned_cols=87 Identities=33% Similarity=0.496 Sum_probs=80.2
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||+||+||++||||++.+|++++|||||+|||+.+++.+.+.++++..+ |.|+|++||+++
T Consensus 112 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~ 191 (235)
T cd03299 112 EIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191 (235)
T ss_pred HHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 567888885 478899999999999999999999999999999999999999999999999998754 899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+++
T Consensus 192 ~~~~~~d~i~ 201 (235)
T cd03299 192 EAWALADKVA 201 (235)
T ss_pred HHHHhCCEEE
Confidence 9886 99985
No 197
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=3.3e-24 Score=162.69 Aligned_cols=88 Identities=27% Similarity=0.449 Sum_probs=82.2
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.|.+. ..+++..+||||||+|+.|||||+.+|+.++||||++|+||.+...+.++++.+++.|..|+++.|+..+
T Consensus 122 ~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVRE 201 (243)
T COG1137 122 ALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRE 201 (243)
T ss_pred HHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHH
Confidence 578888885 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
... |||..+
T Consensus 202 tL~i~dRaYI 211 (243)
T COG1137 202 TLDICDRAYI 211 (243)
T ss_pred HHhhhheEEE
Confidence 887 998753
No 198
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=161.98 Aligned_cols=87 Identities=29% Similarity=0.402 Sum_probs=78.0
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
++++.+++. ..++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+.|+++++ +.|||++||
T Consensus 128 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH 206 (253)
T PRK14267 128 WALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTH 206 (253)
T ss_pred HHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEEC
Confidence 466777762 25788999999999999999999999999999999999999999999999999865 689999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
+++++.. ||||++
T Consensus 207 ~~~~~~~~~d~i~~ 220 (253)
T PRK14267 207 SPAQAARVSDYVAF 220 (253)
T ss_pred CHHHHHhhCCEEEE
Confidence 9999877 999853
No 199
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=162.65 Aligned_cols=86 Identities=28% Similarity=0.399 Sum_probs=77.4
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||
T Consensus 127 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH 205 (258)
T PRK14241 127 KSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTH 205 (258)
T ss_pred HHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEec
Confidence 456777762 35788999999999999999999999999999999999999999999999999854 689999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. ||||+
T Consensus 206 ~~~~~~~~~d~i~ 218 (258)
T PRK14241 206 NMQQAARVSDQTA 218 (258)
T ss_pred CHHHHHHhCCEEE
Confidence 9999876 99986
No 200
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=162.98 Aligned_cols=86 Identities=28% Similarity=0.409 Sum_probs=77.7
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
++++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++ ++.|||++||
T Consensus 135 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH 213 (260)
T PRK10744 135 WALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTH 213 (260)
T ss_pred HHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeC
Confidence 567777763 2578899999999999999999999999999999999999999999999999986 4789999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 214 ~~~~~~~~~d~i~ 226 (260)
T PRK10744 214 NMQQAARCSDYTA 226 (260)
T ss_pred CHHHHHHhCCEEE
Confidence 9999976 99985
No 201
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=1.9e-23 Score=156.47 Aligned_cols=87 Identities=28% Similarity=0.337 Sum_probs=79.6
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++.. .++++.+||+||+||++||||++.+|+++||||||+|||+.+++.+.+.|++++++|.|||++||+.+.
T Consensus 110 ~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 189 (200)
T PRK13540 110 ELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP 189 (200)
T ss_pred HHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh
Confidence 5778888853 678889999999999999999999999999999999999999999999999987779999999999999
Q ss_pred HhcCCccc
Q psy4761 123 ARHAHKVP 130 (131)
Q Consensus 123 ~~~~dri~ 130 (131)
+..||.-+
T Consensus 190 ~~~~d~~~ 197 (200)
T PRK13540 190 LNKADYEE 197 (200)
T ss_pred ccccchhh
Confidence 99898643
No 202
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.90 E-value=1.5e-23 Score=154.00 Aligned_cols=70 Identities=33% Similarity=0.504 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 61 LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
||+|||||++||||++.+|+++||||||+|||+..+..+.+.+++++++|.|||++||+++++..||+++
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~ 166 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRIL 166 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 9999999999999999999999999999999999999999999998777999999999999987799985
No 203
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=163.27 Aligned_cols=87 Identities=26% Similarity=0.425 Sum_probs=78.4
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|+++.+ +.|||++||
T Consensus 142 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH 220 (267)
T PRK14235 142 TSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTH 220 (267)
T ss_pred HHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEc
Confidence 567888884 24678999999999999999999999999999999999999999999999999865 689999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
+++++.. |||+++
T Consensus 221 ~~~~~~~~~d~v~~ 234 (267)
T PRK14235 221 SMQQAARVSQRTAF 234 (267)
T ss_pred CHHHHHhhCCEEEE
Confidence 9999977 999853
No 204
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.90 E-value=1.9e-23 Score=158.96 Aligned_cols=86 Identities=30% Similarity=0.447 Sum_probs=77.9
Q ss_pred HHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh-hH
Q psy4761 45 ISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI-EE 122 (131)
Q Consensus 45 ~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~-~~ 122 (131)
+++.+++. ..++.+.+||+||+||++|||||+.+|+++||||||+|||+.++..+.+.+++++++|.|+|++||++ ++
T Consensus 127 ~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~ 206 (226)
T cd03234 127 LLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSD 206 (226)
T ss_pred HHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHH
Confidence 67777775 36788999999999999999999999999999999999999999999999999877789999999998 46
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+++
T Consensus 207 ~~~~~d~i~ 215 (226)
T cd03234 207 LFRLFDRIL 215 (226)
T ss_pred HHHhCCEEE
Confidence 665 99885
No 205
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.3e-23 Score=158.77 Aligned_cols=76 Identities=28% Similarity=0.425 Sum_probs=71.8
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.++++.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|+++. +|.|||++||+++++..||+++
T Consensus 132 ~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~v~ 207 (234)
T cd03251 132 IGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIENADRIV 207 (234)
T ss_pred eccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEE
Confidence 567899999999999999999999999999999999999999999999999986 4899999999999998899986
No 206
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.6e-23 Score=163.29 Aligned_cols=86 Identities=30% Similarity=0.423 Sum_probs=76.4
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++||
T Consensus 143 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH 221 (268)
T PRK14248 143 ESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTH 221 (268)
T ss_pred HHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEe
Confidence 345666662 25788999999999999999999999999999999999999999999999999865 689999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 222 ~~~~~~~~~d~v~ 234 (268)
T PRK14248 222 NMQQALRVSDRTA 234 (268)
T ss_pred CHHHHHHhCCEEE
Confidence 9999876 99985
No 207
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=160.68 Aligned_cols=86 Identities=34% Similarity=0.471 Sum_probs=78.2
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|+++.+ |.|||++||
T Consensus 121 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH 199 (246)
T PRK14269 121 DCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTH 199 (246)
T ss_pred HHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEec
Confidence 567888883 25778899999999999999999999999999999999999999999999999864 899999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 200 ~~~~~~~~~d~i~ 212 (246)
T PRK14269 200 NMQQGKRVADYTA 212 (246)
T ss_pred CHHHHHhhCcEEE
Confidence 9999976 99985
No 208
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.90 E-value=3.4e-24 Score=176.02 Aligned_cols=88 Identities=33% Similarity=0.540 Sum_probs=82.0
Q ss_pred HHHHhcCCCC----CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEc
Q psy4761 44 YISLLNGLPD----PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~----~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH 118 (131)
++++.+|++. .+.+|.+|||||||||.||.||+++|++||.||||++||...+.+|.++|+++.+ .|.+++++||
T Consensus 137 elL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITH 216 (534)
T COG4172 137 ELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITH 216 (534)
T ss_pred HHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEec
Confidence 6789999963 5789999999999999999999999999999999999999999999999999974 5999999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
|+..+.+ ||||++
T Consensus 217 DL~iVr~~ADrV~V 230 (534)
T COG4172 217 DLGIVRKFADRVYV 230 (534)
T ss_pred cHHHHHHhhhhEEE
Confidence 9999998 999974
No 209
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.6e-23 Score=162.61 Aligned_cols=87 Identities=26% Similarity=0.378 Sum_probs=77.1
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||+|||||++|||||+.+|++|||||||+|||+..++.+.+.|+++++ +.|||++||
T Consensus 133 ~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH 211 (269)
T PRK14259 133 RSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTH 211 (269)
T ss_pred HHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 356666652 25788999999999999999999999999999999999999999999999999854 789999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
+++++.. |||+++
T Consensus 212 ~~~~~~~~~d~i~~ 225 (269)
T PRK14259 212 NMQQAVRVSDMTAF 225 (269)
T ss_pred CHHHHHHhcCEEEE
Confidence 9999987 999863
No 210
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.90 E-value=2.2e-23 Score=158.07 Aligned_cols=87 Identities=29% Similarity=0.419 Sum_probs=79.6
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|+++++ .|+|||++||+++
T Consensus 124 ~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 124 AMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred HHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 577888985 47889999999999999999999999999999999999999999999999999875 5899999999999
Q ss_pred HHhcCCccc
Q psy4761 122 EARHAHKVP 130 (131)
Q Consensus 122 ~~~~~dri~ 130 (131)
....||+++
T Consensus 204 ~~~~~d~v~ 212 (220)
T TIGR02982 204 ILDVADRIV 212 (220)
T ss_pred HHhhCCEEE
Confidence 765699975
No 211
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=160.74 Aligned_cols=86 Identities=27% Similarity=0.380 Sum_probs=76.7
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|++|||||||+|||+..+..+.+.|+++.+ +.|||++||
T Consensus 127 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH 205 (252)
T PRK14239 127 KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTR 205 (252)
T ss_pred HHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEEC
Confidence 356666652 25788999999999999999999999999999999999999999999999999864 689999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. ||||+
T Consensus 206 ~~~~~~~~~d~i~ 218 (252)
T PRK14239 206 SMQQASRISDRTG 218 (252)
T ss_pred CHHHHHHhCCEEE
Confidence 9999876 99985
No 212
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2e-23 Score=160.90 Aligned_cols=86 Identities=30% Similarity=0.421 Sum_probs=77.3
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|+++.+ +.|||++||
T Consensus 126 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH 204 (251)
T PRK14251 126 ESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTH 204 (251)
T ss_pred HHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEEC
Confidence 456777772 25788999999999999999999999999999999999999999999999999854 689999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. ||||+
T Consensus 205 ~~~~~~~~~d~i~ 217 (251)
T PRK14251 205 NLQQAGRISDQTA 217 (251)
T ss_pred CHHHHHhhcCEEE
Confidence 9999887 99985
No 213
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=2.2e-23 Score=152.25 Aligned_cols=71 Identities=35% Similarity=0.583 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc-CCccc
Q psy4761 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH-AHKVP 130 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~-~dri~ 130 (131)
+||+||+||++||||++.+|+++||||||+|||+..++.+.+.+++++++|.|||++||+++++.. |||++
T Consensus 82 qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~ 153 (163)
T cd03216 82 QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVT 153 (163)
T ss_pred ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 499999999999999999999999999999999999999999999997779999999999998877 99985
No 214
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.89 E-value=2.9e-23 Score=163.14 Aligned_cols=89 Identities=26% Similarity=0.395 Sum_probs=80.7
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-Cc
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMM---------HSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GV 111 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~---------~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~ 111 (131)
+.+++.+++. ..++++.+||||||||++|||||+ .+|++|||||||+|||+..++.+.+.++++.++ |.
T Consensus 127 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 206 (272)
T PRK13547 127 WQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNL 206 (272)
T ss_pred HHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCC
Confidence 3577888885 478899999999999999999999 599999999999999999999999999998765 89
Q ss_pred EEEEEEcChhHHhc-CCcccC
Q psy4761 112 TCIITTHYIEEARH-AHKVPI 131 (131)
Q Consensus 112 tvi~vtH~~~~~~~-~dri~~ 131 (131)
|||++||+++++.. ||++++
T Consensus 207 tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 207 GVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred EEEEEECCHHHHHHhCCEEEE
Confidence 99999999999976 999863
No 215
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.89 E-value=3.4e-23 Score=161.87 Aligned_cols=87 Identities=28% Similarity=0.410 Sum_probs=80.2
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcCh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~ 120 (131)
.+++.+++. ..++++.+||+|||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++||++
T Consensus 133 ~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~ 212 (268)
T PRK10419 133 EMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL 212 (268)
T ss_pred HHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH
Confidence 577888884 368899999999999999999999999999999999999999999999999998754 89999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
+++.. ||+++
T Consensus 213 ~~i~~~~d~i~ 223 (268)
T PRK10419 213 RLVERFCQRVM 223 (268)
T ss_pred HHHHHhCCEEE
Confidence 99987 99985
No 216
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.89 E-value=2.3e-23 Score=157.50 Aligned_cols=73 Identities=29% Similarity=0.428 Sum_probs=67.9
Q ss_pred CcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.+.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|++++++ .|||++||++++++.||+++
T Consensus 137 ~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~d~v~ 209 (220)
T cd03245 137 RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLLDLVDRII 209 (220)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHhCCEEE
Confidence 45799999999999999999999999999999999999999999999998654 89999999999886699875
No 217
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3e-23 Score=159.86 Aligned_cols=86 Identities=29% Similarity=0.392 Sum_probs=76.3
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++.+ |.|||++||
T Consensus 125 ~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH 203 (250)
T PRK14240 125 KSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTH 203 (250)
T ss_pred HHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEe
Confidence 345566652 24788999999999999999999999999999999999999999999999999854 789999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 204 ~~~~~~~~~d~v~ 216 (250)
T PRK14240 204 NMQQASRISDKTA 216 (250)
T ss_pred CHHHHHhhCCEEE
Confidence 9999877 99985
No 218
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.3e-23 Score=160.46 Aligned_cols=88 Identities=25% Similarity=0.380 Sum_probs=78.5
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEE
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITT 117 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vt 117 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.|+++++ .|.|||++|
T Consensus 129 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivs 208 (261)
T PRK14258 129 SALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVS 208 (261)
T ss_pred HHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 456677762 25788999999999999999999999999999999999999999999999999864 589999999
Q ss_pred cChhHHhc-CCcccC
Q psy4761 118 HYIEEARH-AHKVPI 131 (131)
Q Consensus 118 H~~~~~~~-~dri~~ 131 (131)
|+++++.. ||||++
T Consensus 209 H~~~~i~~~~d~i~~ 223 (261)
T PRK14258 209 HNLHQVSRLSDFTAF 223 (261)
T ss_pred CCHHHHHHhcCEEEE
Confidence 99999987 999863
No 219
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.89 E-value=1.9e-23 Score=177.82 Aligned_cols=75 Identities=29% Similarity=0.409 Sum_probs=69.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.....+||||||||++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|+
T Consensus 480 ge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~i~~aD~Ii 554 (588)
T PRK11174 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLEDLAQWDQIW 554 (588)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHHHHhCCEEE
Confidence 34456899999999999999999999999999999999999999999998875 5799999999999999999986
No 220
>PRK13409 putative ATPase RIL; Provisional
Probab=99.89 E-value=2.2e-23 Score=178.89 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=81.1
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+||||++
T Consensus 436 ~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~ 515 (590)
T PRK13409 436 EIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY 515 (590)
T ss_pred HHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 578888985 47899999999999999999999999999999999999999999999999999975 4899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 516 ~~~~~aDrvi 525 (590)
T PRK13409 516 MIDYISDRLM 525 (590)
T ss_pred HHHHhCCEEE
Confidence 9987 99986
No 221
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.89 E-value=4.5e-23 Score=161.49 Aligned_cols=87 Identities=15% Similarity=0.239 Sum_probs=79.6
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+||+||++||||++.+|++|||||||+|||+..++.+.+.+.++++.|.|||++||++++
T Consensus 126 ~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~ 205 (264)
T PRK13546 126 KIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQ 205 (264)
T ss_pred HHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 356777775 4788999999999999999999999999999999999999999999999999987779999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+|+
T Consensus 206 i~~~~d~i~ 214 (264)
T PRK13546 206 VRQFCTKIA 214 (264)
T ss_pred HHHHcCEEE
Confidence 987 99885
No 222
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.1e-23 Score=159.36 Aligned_cols=86 Identities=29% Similarity=0.414 Sum_probs=77.6
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||
T Consensus 126 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH 204 (251)
T PRK14270 126 WALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTH 204 (251)
T ss_pred HHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEc
Confidence 466777762 25778999999999999999999999999999999999999999999999999875 589999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 205 ~~~~~~~~~d~v~ 217 (251)
T PRK14270 205 NMQQASRVSDYTA 217 (251)
T ss_pred CHHHHHHhcCEEE
Confidence 9999887 99986
No 223
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=4.8e-23 Score=160.74 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=80.8
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++.. .++.+.+||+|||||++||||++.+|+++|+||||+|||+..+..+.+.+++++++|+|||++||++++
T Consensus 122 ~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~ 201 (255)
T cd03236 122 ELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAV 201 (255)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 5778888853 688999999999999999999999999999999999999999999999999987778999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+|+
T Consensus 202 ~~~~ad~i~ 210 (255)
T cd03236 202 LDYLSDYIH 210 (255)
T ss_pred HHHhCCEEE
Confidence 987 99985
No 224
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.89 E-value=3.1e-23 Score=158.62 Aligned_cols=76 Identities=30% Similarity=0.481 Sum_probs=71.9
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+.|++++ +|.|||++||+++++..||+++
T Consensus 133 ~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~ 208 (238)
T cd03249 133 VGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIA 208 (238)
T ss_pred eccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEE
Confidence 467789999999999999999999999999999999999999999999999987 7899999999999998899985
No 225
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.9e-23 Score=159.53 Aligned_cols=87 Identities=29% Similarity=0.380 Sum_probs=77.5
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++.+.+||+|||||++||||++.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++||
T Consensus 127 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH 205 (252)
T PRK14256 127 SSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTH 205 (252)
T ss_pred HHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEEC
Confidence 456677763 24678999999999999999999999999999999999999999999999999865 589999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
+++++.. |||+++
T Consensus 206 ~~~~~~~~~d~i~~ 219 (252)
T PRK14256 206 NMQQAARVSDYTAF 219 (252)
T ss_pred CHHHHHhhCCEEEE
Confidence 9999976 999863
No 226
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.89 E-value=3.3e-23 Score=153.36 Aligned_cols=71 Identities=28% Similarity=0.531 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc-CCcccC
Q psy4761 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH-AHKVPI 131 (131)
Q Consensus 61 LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~-~dri~~ 131 (131)
||+|||||++||||++.+|+++||||||+|||+..++.+.+.+++++++|.|+|++||+++++.. ||++++
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~ 176 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILV 176 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999987678999999999999988 999853
No 227
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.2e-23 Score=160.07 Aligned_cols=86 Identities=28% Similarity=0.390 Sum_probs=77.0
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++++ +.|+|++||
T Consensus 134 ~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH 212 (259)
T PRK14274 134 KSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTH 212 (259)
T ss_pred HHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEc
Confidence 355666763 25788999999999999999999999999999999999999999999999999865 789999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 213 ~~~~~~~~~d~i~ 225 (259)
T PRK14274 213 NMQQAARVSDQTA 225 (259)
T ss_pred CHHHHHHhCCEEE
Confidence 9999887 99986
No 228
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.89 E-value=4.2e-23 Score=158.40 Aligned_cols=87 Identities=32% Similarity=0.438 Sum_probs=80.0
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++.+.+||+||+||++||||++.+|+++||||||+|||+.+++.+.+.|.+++++ |+|||++||+++
T Consensus 113 ~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~ 192 (237)
T TIGR00968 113 ELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE 192 (237)
T ss_pred HHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 567888885 478889999999999999999999999999999999999999999999999998765 899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 193 ~~~~~~d~i~ 202 (237)
T TIGR00968 193 EAMEVADRIV 202 (237)
T ss_pred HHHhhcCEEE
Confidence 9877 99975
No 229
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.7e-23 Score=158.69 Aligned_cols=85 Identities=31% Similarity=0.443 Sum_probs=76.1
Q ss_pred HHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 45 ISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 45 ~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+..+..+.+.|+++++ +.|||++||+
T Consensus 125 ~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~ 203 (249)
T PRK14253 125 SLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHS 203 (249)
T ss_pred HHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecC
Confidence 45566652 25678999999999999999999999999999999999999999999999999865 5899999999
Q ss_pred hhHHhc-CCccc
Q psy4761 120 IEEARH-AHKVP 130 (131)
Q Consensus 120 ~~~~~~-~dri~ 130 (131)
++++.. |||++
T Consensus 204 ~~~~~~~~d~i~ 215 (249)
T PRK14253 204 MQQARRISDRTA 215 (249)
T ss_pred HHHHHHhCCEEE
Confidence 999887 99985
No 230
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5e-23 Score=158.86 Aligned_cols=85 Identities=26% Similarity=0.352 Sum_probs=76.0
Q ss_pred HHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 45 ISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 45 ~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
+++.+++. ..++++.+||+|||||++|||||+.+|+++||||||+|||+..+..+.+.|+++. +|.|||++||+
T Consensus 127 ~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~ 205 (251)
T PRK14249 127 SLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHN 205 (251)
T ss_pred HHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 44555652 2578899999999999999999999999999999999999999999999999985 58999999999
Q ss_pred hhHHhc-CCccc
Q psy4761 120 IEEARH-AHKVP 130 (131)
Q Consensus 120 ~~~~~~-~dri~ 130 (131)
++++.. ||+++
T Consensus 206 ~~~~~~~~d~i~ 217 (251)
T PRK14249 206 MQQAARASDWTG 217 (251)
T ss_pred HHHHHhhCCEEE
Confidence 999987 89985
No 231
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.9e-23 Score=161.56 Aligned_cols=86 Identities=26% Similarity=0.356 Sum_probs=76.5
Q ss_pred HHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 45 ISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 45 ~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|+++++ +.|||++||+
T Consensus 141 ~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~ 219 (274)
T PRK14265 141 SLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHN 219 (274)
T ss_pred HHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 45555552 25788999999999999999999999999999999999999999999999999864 6899999999
Q ss_pred hhHHhc-CCcccC
Q psy4761 120 IEEARH-AHKVPI 131 (131)
Q Consensus 120 ~~~~~~-~dri~~ 131 (131)
++++.. |||+++
T Consensus 220 ~~~~~~~~d~i~~ 232 (274)
T PRK14265 220 MQQASRVADWTAF 232 (274)
T ss_pred HHHHHHhCCEEEE
Confidence 999987 999863
No 232
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.89 E-value=1.8e-23 Score=164.88 Aligned_cols=87 Identities=28% Similarity=0.465 Sum_probs=76.2
Q ss_pred HHHHHhcCCC-CCCCCcCC-----------CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCC
Q psy4761 43 WYISLLNGLP-DPNSLCGQ-----------VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG 110 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~-----------LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g 110 (131)
|..++.+++. ..++++.. ||+|||||++||||++.+|+++||||||++||+.+...+.+.|++.. .|
T Consensus 109 ~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~ 187 (275)
T cd03289 109 WKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-AD 187 (275)
T ss_pred HHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CC
Confidence 3566777774 34555554 99999999999999999999999999999999999999999999864 48
Q ss_pred cEEEEEEcChhHHhcCCccc
Q psy4761 111 VTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 111 ~tvi~vtH~~~~~~~~dri~ 130 (131)
+|||+|||+++.+..||||+
T Consensus 188 ~tii~isH~~~~i~~~dri~ 207 (275)
T cd03289 188 CTVILSEHRIEAMLECQRFL 207 (275)
T ss_pred CEEEEEECCHHHHHhCCEEE
Confidence 99999999999998899985
No 233
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.5e-23 Score=162.79 Aligned_cols=86 Identities=28% Similarity=0.420 Sum_probs=77.3
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++++ +.|||++||
T Consensus 159 ~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH 237 (285)
T PRK14254 159 ESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTH 237 (285)
T ss_pred HHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 466777763 25788999999999999999999999999999999999999999999999999875 479999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 238 ~~~~i~~~~dri~ 250 (285)
T PRK14254 238 NMQQAARISDKTA 250 (285)
T ss_pred CHHHHHhhcCEEE
Confidence 9999987 99853
No 234
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.3e-23 Score=152.27 Aligned_cols=70 Identities=40% Similarity=0.704 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChhHHhc-CCccc
Q psy4761 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIEEARH-AHKVP 130 (131)
Q Consensus 61 LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~~~~~-~dri~ 130 (131)
||+|||||++|||||+.+|+++||||||+|||+.++..+.+.+++++++ |.|+|++||+++++.. ||+++
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 172 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVV 172 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 9999999999999999999999999999999999999999999999876 8999999999999986 99985
No 235
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=4e-23 Score=154.24 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=78.5
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+..++.+.+.+++..+.|.|+|++||++++
T Consensus 106 ~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 185 (195)
T PRK13541 106 AAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS 185 (195)
T ss_pred HHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc
Confidence 466888885 4788899999999999999999999999999999999999999999999998766678999999999999
Q ss_pred HhcCCcc
Q psy4761 123 ARHAHKV 129 (131)
Q Consensus 123 ~~~~dri 129 (131)
+..+|-|
T Consensus 186 i~~~~~~ 192 (195)
T PRK13541 186 IKSAQIL 192 (195)
T ss_pred cchhhee
Confidence 9988865
No 236
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5.9e-23 Score=158.24 Aligned_cols=86 Identities=34% Similarity=0.450 Sum_probs=77.0
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||
T Consensus 125 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH 203 (250)
T PRK14262 125 ESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTH 203 (250)
T ss_pred HHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeC
Confidence 456667763 25788999999999999999999999999999999999999999999999999864 789999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++.+.. |||++
T Consensus 204 ~~~~~~~~~d~i~ 216 (250)
T PRK14262 204 NIGQAIRIADYIA 216 (250)
T ss_pred CHHHHHHhCCEEE
Confidence 9998876 99985
No 237
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.3e-23 Score=151.61 Aligned_cols=70 Identities=43% Similarity=0.806 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc-CCccc
Q psy4761 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH-AHKVP 130 (131)
Q Consensus 61 LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~-~dri~ 130 (131)
||+||+||++|||||+.+|+++||||||+|||+..++.+.+.|++++++|.|+|++||+.+++.. ||+++
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~ 166 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVA 166 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999998778999999999999986 99885
No 238
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.89 E-value=1.3e-23 Score=172.73 Aligned_cols=87 Identities=31% Similarity=0.488 Sum_probs=81.2
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcCh
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~ 120 (131)
..+..+|++. .+++|.++|||||||++||||++.+|++++||||||+||...+.++.++++++. +.|.+-+++|||+
T Consensus 408 ~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL 487 (534)
T COG4172 408 EALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL 487 (534)
T ss_pred HHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH
Confidence 5778899963 799999999999999999999999999999999999999999999999999997 4599999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
..+.. ||+++
T Consensus 488 ~VvrAl~~~vi 498 (534)
T COG4172 488 AVVRALCHRVI 498 (534)
T ss_pred HHHHHhhceEE
Confidence 99988 99875
No 239
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6e-23 Score=158.34 Aligned_cols=85 Identities=31% Similarity=0.408 Sum_probs=75.4
Q ss_pred HHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 45 ISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 45 ~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
.++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.|+++.+ +.|||++||+
T Consensus 128 ~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~ 206 (252)
T PRK14255 128 SLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHS 206 (252)
T ss_pred HHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECC
Confidence 44555542 25778999999999999999999999999999999999999999999999999865 5899999999
Q ss_pred hhHHhc-CCccc
Q psy4761 120 IEEARH-AHKVP 130 (131)
Q Consensus 120 ~~~~~~-~dri~ 130 (131)
++++.. ||||+
T Consensus 207 ~~~~~~~~d~i~ 218 (252)
T PRK14255 207 MHQASRISDKTA 218 (252)
T ss_pred HHHHHHhCCEEE
Confidence 999976 99985
No 240
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5.7e-23 Score=159.52 Aligned_cols=87 Identities=26% Similarity=0.380 Sum_probs=77.4
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||
T Consensus 129 ~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH 207 (259)
T PRK14260 129 SALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTH 207 (259)
T ss_pred HHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 355666662 35788999999999999999999999999999999999999999999999999865 689999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
+++++.. |||+++
T Consensus 208 ~~~~i~~~~d~i~~ 221 (259)
T PRK14260 208 NMQQATRVSDFTAF 221 (259)
T ss_pred CHHHHHHhcCeEEE
Confidence 9999987 999863
No 241
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.6e-23 Score=156.67 Aligned_cols=76 Identities=30% Similarity=0.470 Sum_probs=71.1
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.++++.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|+++. +|.|||++||+++++..||+++
T Consensus 133 ~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~ 208 (229)
T cd03254 133 LGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKNADKIL 208 (229)
T ss_pred hhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEE
Confidence 456789999999999999999999999999999999999999999999999985 5899999999999998899985
No 242
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.4e-23 Score=157.38 Aligned_cols=76 Identities=30% Similarity=0.481 Sum_probs=71.6
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.++++.+||+|||||++|||||+.+|+++||||||+|||+..+..+.+.|.++++ |.|||++||+++++..||+++
T Consensus 131 ~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~ 206 (236)
T cd03253 131 VGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKII 206 (236)
T ss_pred hhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEE
Confidence 4567889999999999999999999999999999999999999999999999876 899999999999998899985
No 243
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=2.5e-23 Score=154.46 Aligned_cols=87 Identities=38% Similarity=0.540 Sum_probs=81.4
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
++++.+.+. .+++.|-.|||||+|||+|||||+.+|++|++||||++|||+-..++.++|+++...|.|-++|||..+.
T Consensus 124 ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v 203 (242)
T COG4161 124 KLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV 203 (242)
T ss_pred HHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH
Confidence 678888885 5899999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. +.|++
T Consensus 204 a~k~as~vv 212 (242)
T COG4161 204 ARKTASRVV 212 (242)
T ss_pred HHhhhhheE
Confidence 987 77664
No 244
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.6e-23 Score=161.79 Aligned_cols=86 Identities=31% Similarity=0.386 Sum_probs=76.6
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++++ +.|||++||
T Consensus 161 ~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH 239 (286)
T PRK14275 161 KSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTH 239 (286)
T ss_pred HHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeC
Confidence 355666652 35788999999999999999999999999999999999999999999999999865 689999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 240 ~~~~~~~~~d~i~ 252 (286)
T PRK14275 240 NMQQASRVSDYTM 252 (286)
T ss_pred CHHHHHHhCCEEE
Confidence 9999987 99985
No 245
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=8.3e-23 Score=159.86 Aligned_cols=86 Identities=29% Similarity=0.360 Sum_probs=77.4
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||
T Consensus 147 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH 225 (272)
T PRK14236 147 RSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTH 225 (272)
T ss_pred HHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeC
Confidence 456667763 25778999999999999999999999999999999999999999999999999875 789999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 226 ~~~~~~~~~d~i~ 238 (272)
T PRK14236 226 NMQQAARVSDYTA 238 (272)
T ss_pred CHHHHHhhCCEEE
Confidence 9999876 99985
No 246
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=1.4e-22 Score=158.96 Aligned_cols=87 Identities=26% Similarity=0.323 Sum_probs=80.5
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHS---PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~---p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+|+.+ .++++.+|||||+||++||++|+.+ |+++||||||+|||+..+..+.+.|+++++.|.|||++||
T Consensus 151 ~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH 230 (261)
T cd03271 151 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEH 230 (261)
T ss_pred HHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4677889964 6889999999999999999999996 7999999999999999999999999999878999999999
Q ss_pred ChhHHhcCCccc
Q psy4761 119 YIEEARHAHKVP 130 (131)
Q Consensus 119 ~~~~~~~~dri~ 130 (131)
+++++..||+++
T Consensus 231 ~~~~i~~aD~ii 242 (261)
T cd03271 231 NLDVIKCADWII 242 (261)
T ss_pred CHHHHHhCCEEE
Confidence 999998899986
No 247
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.89 E-value=7.3e-23 Score=173.53 Aligned_cols=87 Identities=16% Similarity=0.233 Sum_probs=80.6
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++|.|||++||++++
T Consensus 126 elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~ 205 (549)
T PRK13545 126 EIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205 (549)
T ss_pred HHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 467888885 4788999999999999999999999999999999999999999999999999987779999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||+++
T Consensus 206 i~~l~DrIi 214 (549)
T PRK13545 206 VKSFCTKAL 214 (549)
T ss_pred HHHhCCEEE
Confidence 987 99985
No 248
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=3.9e-23 Score=162.01 Aligned_cols=88 Identities=27% Similarity=0.452 Sum_probs=82.1
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
++++.+|++ ..++++.+|||||+||++|||||+.+|+++++|||+|.||...+.++.+++.++.+ .|.|.+++|||+
T Consensus 91 elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL 170 (268)
T COG4608 91 ELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL 170 (268)
T ss_pred HHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH
Confidence 577888885 37999999999999999999999999999999999999999999999999999985 599999999999
Q ss_pred hHHhc-CCcccC
Q psy4761 121 EEARH-AHKVPI 131 (131)
Q Consensus 121 ~~~~~-~dri~~ 131 (131)
..+.+ ||||++
T Consensus 171 ~vv~~isdri~V 182 (268)
T COG4608 171 SVVRYISDRIAV 182 (268)
T ss_pred HhhhhhcccEEE
Confidence 99998 999863
No 249
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.1e-22 Score=158.73 Aligned_cols=86 Identities=28% Similarity=0.390 Sum_probs=77.0
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|+++. ++.|||++||
T Consensus 142 ~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH 220 (267)
T PRK14237 142 TSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTH 220 (267)
T ss_pred HHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEec
Confidence 356677763 2578899999999999999999999999999999999999999999999999985 4789999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 221 ~~~~~~~~~d~i~ 233 (267)
T PRK14237 221 NMQQAARASDYTA 233 (267)
T ss_pred CHHHHHHhcCEEE
Confidence 9999876 99986
No 250
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.88 E-value=5.4e-23 Score=172.07 Aligned_cols=88 Identities=28% Similarity=0.441 Sum_probs=79.6
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCC-cEEEEEEcCh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG-VTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g-~tvi~vtH~~ 120 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++| .|||++|||+
T Consensus 383 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~ 462 (490)
T PRK10938 383 QWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA 462 (490)
T ss_pred HHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch
Confidence 577889995 4688999999999999999999999999999999999999999999999999998665 5799999999
Q ss_pred hHHhc--CCcccC
Q psy4761 121 EEARH--AHKVPI 131 (131)
Q Consensus 121 ~~~~~--~dri~~ 131 (131)
+++.. |||+.+
T Consensus 463 ~~~~~~~~d~v~~ 475 (490)
T PRK10938 463 EDAPACITHRLEF 475 (490)
T ss_pred hhhhhhhheeEEE
Confidence 99974 788753
No 251
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=8.1e-23 Score=157.47 Aligned_cols=76 Identities=32% Similarity=0.487 Sum_probs=71.7
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc-CCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH-AHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~-~dri~ 130 (131)
.++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++||+++++.. |||++
T Consensus 142 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~ 218 (252)
T PRK14272 142 LKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAARVSDTTS 218 (252)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEE
Confidence 5788999999999999999999999999999999999999999999999999864 7999999999999987 99985
No 252
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.88 E-value=8.1e-23 Score=150.62 Aligned_cols=72 Identities=28% Similarity=0.498 Sum_probs=68.3
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
+.+||+|||||++||||++.+|+++||||||+|||+..++.+++.++++. +|.|||++||+++++..|||++
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~~~ 167 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIEHMDKIL 167 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEE
Confidence 77899999999999999999999999999999999999999999999985 5899999999999998899885
No 253
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=9.5e-23 Score=153.15 Aligned_cols=76 Identities=24% Similarity=0.283 Sum_probs=71.1
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.++++.+||+||+||++||||++.+|+++||||||+|||+..++.+.+.|+++. +|.|+|++||+++++..||+++
T Consensus 119 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~~d~v~ 194 (207)
T cd03369 119 VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDYDKIL 194 (207)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEE
Confidence 467889999999999999999999999999999999999999999999999985 4899999999999998899975
No 254
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.2e-22 Score=158.38 Aligned_cols=87 Identities=26% Similarity=0.357 Sum_probs=77.3
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||+||+||++|||||+.+|+++||||||+|||+..+..+.+.|++++ +|.|||++||
T Consensus 128 ~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH 206 (261)
T PRK14263 128 HALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTH 206 (261)
T ss_pred HHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeC
Confidence 466777763 1356788999999999999999999999999999999999999999999999985 4789999999
Q ss_pred ChhHHhc-CCcccC
Q psy4761 119 YIEEARH-AHKVPI 131 (131)
Q Consensus 119 ~~~~~~~-~dri~~ 131 (131)
+++++.. |||+++
T Consensus 207 ~~~~i~~~~d~v~~ 220 (261)
T PRK14263 207 NMQQAIRVADTTAF 220 (261)
T ss_pred CHHHHHHhCCEEEE
Confidence 9999877 999863
No 255
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=8.5e-23 Score=159.20 Aligned_cols=86 Identities=27% Similarity=0.373 Sum_probs=76.0
Q ss_pred HHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 45 ISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 45 ~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|.++.+ +.|||++||+
T Consensus 131 ~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~ 209 (264)
T PRK14243 131 SLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHN 209 (264)
T ss_pred HHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 34555552 25778999999999999999999999999999999999999999999999999865 5899999999
Q ss_pred hhHHhc-CCcccC
Q psy4761 120 IEEARH-AHKVPI 131 (131)
Q Consensus 120 ~~~~~~-~dri~~ 131 (131)
++++.. |||+++
T Consensus 210 ~~~~~~~~d~v~~ 222 (264)
T PRK14243 210 MQQAARVSDMTAF 222 (264)
T ss_pred HHHHHHhCCEEEE
Confidence 999987 999863
No 256
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.88 E-value=1.1e-22 Score=152.78 Aligned_cols=75 Identities=28% Similarity=0.418 Sum_probs=69.8
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh--cCCccc
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEAR--HAHKVP 130 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~--~~dri~ 130 (131)
+...+||+||+||++||||++.+|+++||||||+|||+.++..+.+.|++++++|.|||++||+++.+. .|||++
T Consensus 100 ~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~ 176 (200)
T cd03217 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVH 176 (200)
T ss_pred hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEE
Confidence 344699999999999999999999999999999999999999999999998777899999999999998 589975
No 257
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.88 E-value=3.2e-23 Score=174.13 Aligned_cols=88 Identities=31% Similarity=0.501 Sum_probs=82.7
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..+.++++||.||||.|+||||+..+++++||||||++|+....+.+++++++++++|.+||+|||.+++
T Consensus 128 ~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~E 207 (500)
T COG1129 128 ELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDE 207 (500)
T ss_pred HHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence 577878773 4889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
+.+ ||||++
T Consensus 208 i~~i~DritV 217 (500)
T COG1129 208 VFEIADRITV 217 (500)
T ss_pred HHHhcCEEEE
Confidence 998 999974
No 258
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.88 E-value=1.2e-22 Score=153.78 Aligned_cols=76 Identities=30% Similarity=0.416 Sum_probs=69.6
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQ--HLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~--~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
++++.+||+|||||++||||++.+|+++||||||+|||+..++.+.+ +++.+++.|.|+|++||+++++..||++.
T Consensus 135 ~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~ 212 (218)
T cd03290 135 GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWII 212 (218)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEE
Confidence 46789999999999999999999999999999999999999999998 66666666899999999999987799875
No 259
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.88 E-value=1.2e-22 Score=151.76 Aligned_cols=80 Identities=33% Similarity=0.295 Sum_probs=73.2
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.|.+++++|.|||++||+...
T Consensus 110 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~ 189 (198)
T TIGR01189 110 DALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG 189 (198)
T ss_pred HHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc
Confidence 567888885 4688999999999999999999999999999999999999999999999999987778999999999854
Q ss_pred H
Q psy4761 123 A 123 (131)
Q Consensus 123 ~ 123 (131)
+
T Consensus 190 ~ 190 (198)
T TIGR01189 190 L 190 (198)
T ss_pred c
Confidence 3
No 260
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.6e-23 Score=157.70 Aligned_cols=87 Identities=34% Similarity=0.485 Sum_probs=79.8
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
..+..+|+.. .++++.+||||||||+.|||||+.+|++|+||||++.||.-.++.+.+.+.++. ..|+.+++|||+++
T Consensus 115 q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie 194 (259)
T COG4525 115 QMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE 194 (259)
T ss_pred HHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 5778889954 788999999999999999999999999999999999999999999999999876 56999999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.- ++|++
T Consensus 195 EAlflatrLv 204 (259)
T COG4525 195 EALFLATRLV 204 (259)
T ss_pred HHHhhhheeE
Confidence 9986 88765
No 261
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.88 E-value=8.9e-23 Score=170.04 Aligned_cols=88 Identities=39% Similarity=0.589 Sum_probs=84.1
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+.+.+|++ +.+.++.+||-|+||||.|.+||.++|++|||||||+-|.|...+.+++.++.++++|+|||++||.+++
T Consensus 123 ~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~E 202 (501)
T COG3845 123 ELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKE 202 (501)
T ss_pred HHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence 578899997 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
+.. |||+++
T Consensus 203 v~~iaDrvTV 212 (501)
T COG3845 203 VMAIADRVTV 212 (501)
T ss_pred HHHhhCeeEE
Confidence 998 999863
No 262
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.3e-22 Score=148.79 Aligned_cols=69 Identities=39% Similarity=0.666 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 61 LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
||+|||||++||||++.+|+++||||||+|||+..+..+.+.++++.+ ++|||++||+++++..||+++
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~~~ 165 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLSTIRDADRII 165 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999864 799999999999998899875
No 263
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=1.6e-22 Score=152.90 Aligned_cols=75 Identities=21% Similarity=0.336 Sum_probs=70.5
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
++++.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.|+++.+ +.|||++||+++++..||+++
T Consensus 134 ~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~ 208 (221)
T cd03244 134 EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIIDSDRIL 208 (221)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhhCCEEE
Confidence 568899999999999999999999999999999999999999999999999854 689999999999998899875
No 264
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.8e-22 Score=155.93 Aligned_cols=86 Identities=28% Similarity=0.380 Sum_probs=76.4
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.|+++++ +.|||++||
T Consensus 128 ~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh 206 (253)
T PRK14261 128 KSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTH 206 (253)
T ss_pred HHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEc
Confidence 345666652 25788999999999999999999999999999999999999999999999999865 589999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. ||+++
T Consensus 207 ~~~~~~~~~d~v~ 219 (253)
T PRK14261 207 NMQQAARVSDYTG 219 (253)
T ss_pred CHHHHHhhCCEEE
Confidence 9999976 99885
No 265
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.5e-22 Score=151.03 Aligned_cols=71 Identities=28% Similarity=0.447 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH-Hh-cCCccc
Q psy4761 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE-AR-HAHKVP 130 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~-~~-~~dri~ 130 (131)
+|||||+||++||||++.+|+++|+||||+|||+.+++.+.+.++++++.|.|||++||+++. +. .|||++
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~ 180 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLL 180 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEE
Confidence 899999999999999999999999999999999999999999999987778999999999984 54 499985
No 266
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.5e-22 Score=158.39 Aligned_cols=76 Identities=29% Similarity=0.478 Sum_probs=71.6
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc-CCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH-AHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~-~dri~ 130 (131)
.++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++.. |||++
T Consensus 161 ~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~ 237 (271)
T PRK14238 161 LHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTA 237 (271)
T ss_pred HhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEE
Confidence 5778999999999999999999999999999999999999999999999999865 7999999999999887 99975
No 267
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.88 E-value=1.8e-22 Score=151.04 Aligned_cols=71 Identities=38% Similarity=0.564 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh-HHhc-CCccc
Q psy4761 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE-EARH-AHKVP 130 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~-~~~~-~dri~ 130 (131)
+||+||+||++|||||+.+|+++||||||+|||+..++.+.+.|++++++|.|+|++||+++ ++.. ||+++
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~ 183 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLL 183 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEE
Confidence 89999999999999999999999999999999999999999999998767999999999996 5655 99885
No 268
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.5e-22 Score=157.83 Aligned_cols=86 Identities=34% Similarity=0.463 Sum_probs=76.9
Q ss_pred HHHHhcCCCC-----CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLPD-----PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~-----~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++.. .++.+.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|+++++ +.|||++||
T Consensus 142 ~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH 220 (276)
T PRK14271 142 ARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTH 220 (276)
T ss_pred HHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 3567777742 4678999999999999999999999999999999999999999999999999875 589999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 221 ~~~~~~~~~dri~ 233 (276)
T PRK14271 221 NLAQAARISDRAA 233 (276)
T ss_pred CHHHHHHhCCEEE
Confidence 9999887 99985
No 269
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.88 E-value=1.3e-22 Score=172.39 Aligned_cols=73 Identities=29% Similarity=0.417 Sum_probs=67.9
Q ss_pred CcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
...+||||||||++||||++++|+++||||||++||+.+...+.+.+.++. +++|+|+|||+++.+..||+|+
T Consensus 477 ~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~~~~~D~Ii 549 (582)
T PRK11176 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEKADEIL 549 (582)
T ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEE
Confidence 346799999999999999999999999999999999999999999998874 4799999999999999999985
No 270
>PRK13409 putative ATPase RIL; Provisional
Probab=99.88 E-value=2.2e-22 Score=172.76 Aligned_cols=86 Identities=22% Similarity=0.299 Sum_probs=80.7
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++||+||+.+|+++||||||++||+..+..+.+.|+++++ |.|||++||++++
T Consensus 195 ~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~ 273 (590)
T PRK13409 195 EVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAV 273 (590)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence 567888885 47899999999999999999999999999999999999999999999999999988 9999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. ||||.
T Consensus 274 l~~~~D~v~ 282 (590)
T PRK13409 274 LDYLADNVH 282 (590)
T ss_pred HHHhCCEEE
Confidence 987 99985
No 271
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.6e-22 Score=154.64 Aligned_cols=86 Identities=28% Similarity=0.400 Sum_probs=76.3
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||+|||||++||||++.+|++|||||||+|||+.++..+.+.|+++++ |.|||++||
T Consensus 125 ~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh 203 (250)
T PRK14266 125 ESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTH 203 (250)
T ss_pred HHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEC
Confidence 355666662 24778999999999999999999999999999999999999999999999999854 789999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. ||+++
T Consensus 204 ~~~~~~~~~~~i~ 216 (250)
T PRK14266 204 NMQQATRVSKYTS 216 (250)
T ss_pred CHHHHHhhcCEEE
Confidence 9999988 88874
No 272
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.6e-22 Score=159.73 Aligned_cols=85 Identities=25% Similarity=0.404 Sum_probs=76.4
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|+++++ +.|||++||
T Consensus 179 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH 257 (305)
T PRK14264 179 RSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTH 257 (305)
T ss_pred HHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEc
Confidence 456667763 24778999999999999999999999999999999999999999999999999876 489999999
Q ss_pred ChhHHhc-CCcc
Q psy4761 119 YIEEARH-AHKV 129 (131)
Q Consensus 119 ~~~~~~~-~dri 129 (131)
+++++.. |||+
T Consensus 258 ~~~~i~~~~d~i 269 (305)
T PRK14264 258 NMQQAARISDQT 269 (305)
T ss_pred CHHHHHHhcCEE
Confidence 9999887 9985
No 273
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.1e-22 Score=155.75 Aligned_cols=86 Identities=30% Similarity=0.396 Sum_probs=77.5
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
++++.+++. ..++++..||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|.++++ +.|||++||
T Consensus 132 ~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh 210 (257)
T PRK14246 132 ECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSH 210 (257)
T ss_pred HHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEEC
Confidence 566777873 25778999999999999999999999999999999999999999999999999864 699999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. ||+++
T Consensus 211 ~~~~~~~~~d~v~ 223 (257)
T PRK14246 211 NPQQVARVADYVA 223 (257)
T ss_pred CHHHHHHhCCEEE
Confidence 9999966 99875
No 274
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=2.8e-22 Score=149.25 Aligned_cols=70 Identities=24% Similarity=0.431 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCC-cEEEEEEcChhHHhc-CCccc
Q psy4761 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG-VTCIITTHYIEEARH-AHKVP 130 (131)
Q Consensus 61 LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g-~tvi~vtH~~~~~~~-~dri~ 130 (131)
||+|||||++||||++.+|++++|||||+|||+..++.+.+.++++++++ .|||++||+++++.. ||+++
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~ 143 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIH 143 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999987664 899999999999987 99985
No 275
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.87 E-value=2.9e-22 Score=150.25 Aligned_cols=77 Identities=26% Similarity=0.390 Sum_probs=69.6
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQ-HLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~-~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.++++.+||+|||||++||||++.+|+++|+||||+|||+...+.+.+ +++++.++|.|||++||+++.+..||+++
T Consensus 121 ~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~ 198 (204)
T cd03250 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIV 198 (204)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEE
Confidence 456788999999999999999999999999999999999999999988 45666556899999999999998899875
No 276
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.87 E-value=3.3e-22 Score=146.44 Aligned_cols=71 Identities=32% Similarity=0.497 Sum_probs=66.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
++.+||+|||||++||||++.+|+++||||||+|||+..++.+.+.++++ +.|+|++||+++....||+++
T Consensus 88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~~~~d~i~ 158 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSLWKFHDRVL 158 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHHhhCCEEE
Confidence 57899999999999999999999999999999999999999999999876 589999999998876699875
No 277
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.87 E-value=1.8e-22 Score=190.40 Aligned_cols=88 Identities=31% Similarity=0.635 Sum_probs=82.5
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
++++.+++. ..++++++||||||||++||+||+.+|++++|||||+|||+..++.+++.|++++++|+|||++||++++
T Consensus 2053 ~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee 2132 (2272)
T TIGR01257 2053 WSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEE 2132 (2272)
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 567888995 4789999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
++. ||||++
T Consensus 2133 ~e~lcDrV~I 2142 (2272)
T TIGR01257 2133 CEALCTRLAI 2142 (2272)
T ss_pred HHHhCCEEEE
Confidence 998 999874
No 278
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.8e-22 Score=154.76 Aligned_cols=86 Identities=30% Similarity=0.447 Sum_probs=76.0
Q ss_pred HHHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+.|+++++ +.|||++||
T Consensus 140 ~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth 218 (265)
T PRK14252 140 NALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTH 218 (265)
T ss_pred HHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEec
Confidence 345555552 24678999999999999999999999999999999999999999999999999865 689999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
+++++.. |||++
T Consensus 219 ~~~~~~~~~d~i~ 231 (265)
T PRK14252 219 NMQQAARVSDYTA 231 (265)
T ss_pred CHHHHHHhCCEEE
Confidence 9999976 99986
No 279
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.87 E-value=2.7e-22 Score=169.87 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=67.8
Q ss_pred CcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
...+||||||||++||||++.+|+++||||||++||+.+.+.+.+.|.++. +++|+|+|||+.+....||+|+
T Consensus 466 ~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~~~~~~D~ii 538 (571)
T TIGR02203 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLSTIEKADRIV 538 (571)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhHHHHhCCEEE
Confidence 345799999999999999999999999999999999999999999998874 5799999999999998999985
No 280
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.9e-22 Score=160.68 Aligned_cols=86 Identities=29% Similarity=0.434 Sum_probs=76.8
Q ss_pred HHHhcCCC-----CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 45 ISLLNGLP-----DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 45 ~~~~~~l~-----~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
+++..++. ..++++.+||||||||++||||++.+|++|||||||+|||+.+...+.+.|+++.+ ++|||++||+
T Consensus 205 ~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~ 283 (329)
T PRK14257 205 SLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHS 283 (329)
T ss_pred HHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 45555552 25788999999999999999999999999999999999999999999999998865 6999999999
Q ss_pred hhHHhc-CCcccC
Q psy4761 120 IEEARH-AHKVPI 131 (131)
Q Consensus 120 ~~~~~~-~dri~~ 131 (131)
++++.+ ||||++
T Consensus 284 l~~i~~~~Driiv 296 (329)
T PRK14257 284 MAQAQRISDETVF 296 (329)
T ss_pred HHHHHHhCCEEEE
Confidence 999998 999864
No 281
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.87 E-value=9.7e-22 Score=152.58 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=70.6
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.+.++.+||+||+||++||||++.+|+++||||||+|||+..++.+.+.++++. +|.|||++||+++++..||||+
T Consensus 150 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~dri~ 225 (257)
T cd03288 150 VTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILDADLVL 225 (257)
T ss_pred eccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHhCCEEE
Confidence 456778999999999999999999999999999999999999999999999874 4899999999999998899986
No 282
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=5.9e-22 Score=168.56 Aligned_cols=84 Identities=25% Similarity=0.259 Sum_probs=77.1
Q ss_pred HHHHhcCCCCCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 44 YISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 44 ~~~~~~~l~~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
.+++.++++..++++++||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. .|||+||||++++
T Consensus 147 ~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~ 223 (556)
T PRK11819 147 IAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFL 223 (556)
T ss_pred HHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHH
Confidence 4678888865788999999999999999999999999999999999999999999999998863 4999999999999
Q ss_pred hc-CCccc
Q psy4761 124 RH-AHKVP 130 (131)
Q Consensus 124 ~~-~dri~ 130 (131)
.. ||+|+
T Consensus 224 ~~~~d~i~ 231 (556)
T PRK11819 224 DNVAGWIL 231 (556)
T ss_pred HhhcCeEE
Confidence 88 99886
No 283
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.87 E-value=3.6e-22 Score=170.27 Aligned_cols=74 Identities=26% Similarity=0.380 Sum_probs=68.6
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|+
T Consensus 472 e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~l~~~D~ii 545 (592)
T PRK10790 472 EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLSTIVEADTIL 545 (592)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhCCEEE
Confidence 34568999999999999999999999999999999999999999999998754 689999999999999999985
No 284
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6e-22 Score=167.37 Aligned_cols=84 Identities=24% Similarity=0.235 Sum_probs=77.1
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++||||++.+|++|||||||+|||+.+++.+.+.|+++ +.|||+||||++
T Consensus 420 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~ 496 (530)
T PRK15064 420 GTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE 496 (530)
T ss_pred HHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH
Confidence 577888884 368999999999999999999999999999999999999999999999999886 359999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||++
T Consensus 497 ~~~~~~d~i~ 506 (530)
T PRK15064 497 FVSSLATRII 506 (530)
T ss_pred HHHHhCCEEE
Confidence 9987 99985
No 285
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.86 E-value=5.6e-22 Score=169.14 Aligned_cols=73 Identities=33% Similarity=0.505 Sum_probs=68.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
...+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++. +|+|+|++||+++.+..||+|+
T Consensus 472 ~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~~~d~i~ 544 (574)
T PRK11160 472 GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLEQFDRIC 544 (574)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHHhCCEEE
Confidence 466899999999999999999999999999999999999999999999875 5899999999999999999985
No 286
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.86 E-value=5.7e-22 Score=172.21 Aligned_cols=72 Identities=36% Similarity=0.621 Sum_probs=67.2
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
....+||||||||++||||++++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+..||||+
T Consensus 611 e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Ii 682 (710)
T TIGR03796 611 EGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEII 682 (710)
T ss_pred cCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEE
Confidence 44568999999999999999999999999999999999999999999976 4799999999999999999986
No 287
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.86 E-value=4.6e-22 Score=172.85 Aligned_cols=74 Identities=31% Similarity=0.487 Sum_probs=68.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.....+||||||||++||||++++|++|||||||++||+.+.+.+.+.|+++ +|+|+|+|||+++.+..||||+
T Consensus 606 ~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~~D~i~ 679 (708)
T TIGR01193 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQSDKII 679 (708)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHcCCEEE
Confidence 3455689999999999999999999999999999999999999999999875 4789999999999999999985
No 288
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.5e-21 Score=150.20 Aligned_cols=86 Identities=31% Similarity=0.511 Sum_probs=76.9
Q ss_pred HHHhcC-CC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 45 ISLLNG-LP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 45 ~~~~~~-l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
+.+.|- +. ..+++.++|||||||.++|||||+.+|++|+|||||.||-|.-.+++++.|++++++ |.||++|.++..
T Consensus 119 v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~ 198 (237)
T COG0410 119 VYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR 198 (237)
T ss_pred HHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH
Confidence 444443 22 378999999999999999999999999999999999999999999999999999865 889999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
.+.. +||.+
T Consensus 199 ~Al~iaDr~y 208 (237)
T COG0410 199 FALEIADRGY 208 (237)
T ss_pred HHHHhhCEEE
Confidence 9987 99865
No 289
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.86 E-value=6.3e-22 Score=171.49 Aligned_cols=72 Identities=31% Similarity=0.504 Sum_probs=67.0
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
....+||||||||++||||++++|+++||||||++||+.+.+.+.+.++++ ++|+|+|||+++.+..||||+
T Consensus 584 e~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Ii 655 (686)
T TIGR03797 584 EGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIY 655 (686)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEE
Confidence 345689999999999999999999999999999999999999999999875 579999999999999999986
No 290
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.86 E-value=5.8e-22 Score=183.50 Aligned_cols=76 Identities=28% Similarity=0.458 Sum_probs=70.2
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChhHHhcCCcccC
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
....+||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|.++. .+|+|+|+|||+++.+..||+|++
T Consensus 1354 e~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivv 1430 (1466)
T PTZ00265 1354 PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVV 1430 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEE
Confidence 3456899999999999999999999999999999999999999999999886 368999999999999999999863
No 291
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.86 E-value=9.5e-22 Score=185.54 Aligned_cols=87 Identities=34% Similarity=0.593 Sum_probs=81.1
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++.. .++++++||||||||++||+||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||++++
T Consensus 1044 ~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmde 1122 (2272)
T TIGR01257 1044 AMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDE 1122 (2272)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHH
Confidence 5778899964 789999999999999999999999999999999999999999999999999985 58999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
+.. ||||++
T Consensus 1123 a~~laDrI~i 1132 (2272)
T TIGR01257 1123 ADLLGDRIAI 1132 (2272)
T ss_pred HHHhCCEEEE
Confidence 987 999864
No 292
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.1e-21 Score=165.83 Aligned_cols=85 Identities=26% Similarity=0.305 Sum_probs=76.3
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.++++. .++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|.+ .|.|||+||||++
T Consensus 137 ~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~ 213 (530)
T PRK15064 137 ELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH 213 (530)
T ss_pred HHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH
Confidence 5678888863 3578999999999999999999999999999999999999999999999864 5899999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||+|++
T Consensus 214 ~~~~~~d~i~~ 224 (530)
T PRK15064 214 FLNSVCTHMAD 224 (530)
T ss_pred HHHhhcceEEE
Confidence 9987 999863
No 293
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.4e-21 Score=147.07 Aligned_cols=77 Identities=26% Similarity=0.393 Sum_probs=67.7
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEE-EcChhHHhc-CCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIIT-THYIEEARH-AHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~v-tH~~~~~~~-~dri~ 130 (131)
.++++.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+.++++.++ +.|+|++ +|+.+++.. ||+++
T Consensus 112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~ 191 (202)
T cd03233 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVL 191 (202)
T ss_pred cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEE
Confidence 57789999999999999999999999999999999999999999999999998754 6665554 566677766 99985
No 294
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=7.4e-22 Score=167.07 Aligned_cols=75 Identities=35% Similarity=0.527 Sum_probs=69.4
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
.....|||||+|||++||||+++++++|+||||++||.++.+.+.+.|.++.+ ++|++++||++..+.+||+|++
T Consensus 452 e~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~~~~~D~I~v 526 (559)
T COG4988 452 EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDAADADRIVV 526 (559)
T ss_pred cCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHHHhcCCEEEE
Confidence 34446999999999999999999999999999999999999999999999865 5999999999999999999863
No 295
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.1e-21 Score=169.65 Aligned_cols=84 Identities=24% Similarity=0.321 Sum_probs=77.3
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.++..+++. ..++++++|||||||||+||++|+.+|++|||||||+|||+.+++.+.+.|.++ .| |||+||||++
T Consensus 412 ~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~ 488 (638)
T PRK10636 412 DYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH 488 (638)
T ss_pred HHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH
Confidence 567888884 368899999999999999999999999999999999999999999999999987 34 9999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||||+
T Consensus 489 ~~~~~~d~i~ 498 (638)
T PRK10636 489 LLRSTTDDLY 498 (638)
T ss_pred HHHHhCCEEE
Confidence 9987 99986
No 296
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.86 E-value=1.3e-21 Score=166.24 Aligned_cols=84 Identities=26% Similarity=0.268 Sum_probs=76.0
Q ss_pred HHHHhcCCCCCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 44 YISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 44 ~~~~~~~l~~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
.+++.++++..++++++||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++
T Consensus 145 ~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~ 221 (552)
T TIGR03719 145 IAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFL 221 (552)
T ss_pred HHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHH
Confidence 356777876568899999999999999999999999999999999999999999999999876 35999999999999
Q ss_pred hc-CCccc
Q psy4761 124 RH-AHKVP 130 (131)
Q Consensus 124 ~~-~dri~ 130 (131)
.. ||+++
T Consensus 222 ~~~~d~v~ 229 (552)
T TIGR03719 222 DNVAGWIL 229 (552)
T ss_pred HhhcCeEE
Confidence 87 99885
No 297
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.86 E-value=2.2e-21 Score=164.33 Aligned_cols=77 Identities=29% Similarity=0.435 Sum_probs=71.4
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.+....+||||||||++||||++++|+++||||||+|||+.+.+.+.+.++++..+|+|+|++||+++.+..||+|+
T Consensus 448 ~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~ 524 (544)
T TIGR01842 448 IGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKIL 524 (544)
T ss_pred cCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE
Confidence 45567899999999999999999999999999999999999999999999998766899999999999888899975
No 298
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.86 E-value=1.2e-21 Score=166.54 Aligned_cols=76 Identities=30% Similarity=0.510 Sum_probs=69.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
.....+||||||||++||||++++|+++||||||++||+.+...+.+.+.++. +|+|+++++|+++.+.+||+|++
T Consensus 460 ge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~aD~IiV 535 (567)
T COG1132 460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNADRIIV 535 (567)
T ss_pred cCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHhCCEEEE
Confidence 34456899999999999999999999999999999999999999999999876 56899999999999999999863
No 299
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.86 E-value=1.2e-21 Score=166.12 Aligned_cols=75 Identities=31% Similarity=0.456 Sum_probs=69.0
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.....+||||||||++||||++.+|+++||||||++||+.+.+.+++.++++. +|+|+|++||+++.+..||||+
T Consensus 471 ~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~~~~d~vi 545 (576)
T TIGR02204 471 GERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATVLKADRIV 545 (576)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEE
Confidence 34456899999999999999999999999999999999999999999999874 5799999999999999999975
No 300
>KOG0055|consensus
Probab=99.86 E-value=4.4e-22 Score=179.26 Aligned_cols=76 Identities=33% Similarity=0.526 Sum_probs=69.4
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
....-+||||||||++|||||+.+|+||||||||++||+++.+.+.+.|.+.. .|+|.|+|+|++..+.++|+|++
T Consensus 484 ge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLStIrnaD~I~v 559 (1228)
T KOG0055|consen 484 GERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLSTIRNADKIAV 559 (1228)
T ss_pred cCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhhhhccCEEEE
Confidence 34445799999999999999999999999999999999999999999998864 58899999999999999999874
No 301
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.86 E-value=1.7e-21 Score=165.48 Aligned_cols=84 Identities=24% Similarity=0.289 Sum_probs=77.1
Q ss_pred HHHHhcCCC-C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++. . .++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++. | |||+||||++
T Consensus 425 ~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~ 501 (552)
T TIGR03719 425 AYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW 501 (552)
T ss_pred HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH
Confidence 477888985 3 688999999999999999999999999999999999999999999999999873 4 8999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||||+
T Consensus 502 ~~~~~~d~i~ 511 (552)
T TIGR03719 502 FLDRIATHIL 511 (552)
T ss_pred HHHHhCCEEE
Confidence 9987 99986
No 302
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.6e-21 Score=168.59 Aligned_cols=84 Identities=24% Similarity=0.236 Sum_probs=77.0
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+|+. ..++++.+||||||||++||+||+.+|++|||||||+|||+.+...+.+.|+++ +.|||+||||++
T Consensus 131 ~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~ 207 (638)
T PRK10636 131 SLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD 207 (638)
T ss_pred HHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH
Confidence 567888985 468899999999999999999999999999999999999999999999998875 469999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+|+
T Consensus 208 ~l~~~~d~i~ 217 (638)
T PRK10636 208 FLDPIVDKII 217 (638)
T ss_pred HHHHhcCEEE
Confidence 9987 99985
No 303
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.85 E-value=2.4e-21 Score=167.17 Aligned_cols=83 Identities=27% Similarity=0.366 Sum_probs=76.2
Q ss_pred HHHHhcCCCCCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 44 YISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 44 ~~~~~~~l~~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
.+++.+|+. .++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.+.|+++. .|||+||||.+++
T Consensus 141 ~~l~~lgl~-~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~~l 216 (635)
T PRK11147 141 EVLAQLGLD-PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRSFI 216 (635)
T ss_pred HHHHhCCCC-CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHHHH
Confidence 567888886 478999999999999999999999999999999999999999999999998872 5999999999999
Q ss_pred hc-CCccc
Q psy4761 124 RH-AHKVP 130 (131)
Q Consensus 124 ~~-~dri~ 130 (131)
.. ||+|+
T Consensus 217 ~~~~d~i~ 224 (635)
T PRK11147 217 RNMATRIV 224 (635)
T ss_pred HHhcCeEE
Confidence 87 99985
No 304
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.85 E-value=2.2e-21 Score=165.01 Aligned_cols=84 Identities=23% Similarity=0.272 Sum_probs=77.1
Q ss_pred HHHHhcCCC-C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++. . .++++.+||||||||++||||++.+|++|||||||+|||+..++.+.+.|.++. | |||+||||++
T Consensus 427 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~ 503 (556)
T PRK11819 427 AYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW 503 (556)
T ss_pred HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH
Confidence 477888985 3 688999999999999999999999999999999999999999999999999873 4 8999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||||+
T Consensus 504 ~~~~~~d~i~ 513 (556)
T PRK11819 504 FLDRIATHIL 513 (556)
T ss_pred HHHHhCCEEE
Confidence 9987 99986
No 305
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.85 E-value=2.9e-21 Score=138.75 Aligned_cols=69 Identities=32% Similarity=0.428 Sum_probs=64.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc-CCccc
Q psy4761 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH-AHKVP 130 (131)
Q Consensus 59 ~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~-~dri~ 130 (131)
.+||+||+||++||||++.+|+++|+||||+|||+..+..+.+.++++ +.|+|++||+++++.. ||+++
T Consensus 69 ~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~~~~~d~v~ 138 (144)
T cd03221 69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFLDQVATKII 138 (144)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCEEE
Confidence 459999999999999999999999999999999999999999999876 4699999999999987 89985
No 306
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.85 E-value=2.3e-21 Score=147.16 Aligned_cols=86 Identities=15% Similarity=0.052 Sum_probs=74.0
Q ss_pred HHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 45 ISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 45 ~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
+.+.++++ ..+++++.||+|||||++||||++.+|+++||||||+++|+..++.+.+.+.+..+ +.|+|++||+++++
T Consensus 88 ~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH~~~~~ 166 (213)
T PRK15177 88 CYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLTHNPRLI 166 (213)
T ss_pred HHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEECCHHHH
Confidence 34556664 36789999999999999999999999999999999999999999999998865433 46899999999999
Q ss_pred hc-CCcccC
Q psy4761 124 RH-AHKVPI 131 (131)
Q Consensus 124 ~~-~dri~~ 131 (131)
.. ||++++
T Consensus 167 ~~~~d~i~~ 175 (213)
T PRK15177 167 KEHCHAFGV 175 (213)
T ss_pred HHhcCeeEE
Confidence 76 998863
No 307
>PLN03211 ABC transporter G-25; Provisional
Probab=99.85 E-value=2.4e-21 Score=168.13 Aligned_cols=88 Identities=33% Similarity=0.474 Sum_probs=77.7
Q ss_pred HHHHhcCCCC-C-----CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEE
Q psy4761 44 YISLLNGLPD-P-----NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117 (131)
Q Consensus 44 ~~~~~~~l~~-~-----~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vt 117 (131)
.+++.+|+.. . ++.+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++|
T Consensus 184 ~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~s 263 (659)
T PLN03211 184 SVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSM 263 (659)
T ss_pred HHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5778888853 3 446778999999999999999999999999999999999999999999999987899999999
Q ss_pred cChh-HHhc-CCcccC
Q psy4761 118 HYIE-EARH-AHKVPI 131 (131)
Q Consensus 118 H~~~-~~~~-~dri~~ 131 (131)
|+++ ++.+ ||+|++
T Consensus 264 H~~~~~i~~~~D~iil 279 (659)
T PLN03211 264 HQPSSRVYQMFDSVLV 279 (659)
T ss_pred cCCCHHHHHhhceEEE
Confidence 9997 4555 999863
No 308
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.85 E-value=1.4e-21 Score=170.33 Aligned_cols=73 Identities=30% Similarity=0.479 Sum_probs=64.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.....+||||||||++||||++++|+++||||||++||+...+.+.+ .. ..+++|+|+|||+++.+..||+|+
T Consensus 612 ge~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~aD~Ii 684 (711)
T TIGR00958 612 GEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVERADQIL 684 (711)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHhCCEEE
Confidence 34456899999999999999999999999999999999999888887 22 235899999999999999999986
No 309
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=6.2e-21 Score=137.74 Aligned_cols=71 Identities=45% Similarity=0.675 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc-CCccc
Q psy4761 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH-AHKVP 130 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~-~dri~ 130 (131)
+||+||+||++||||++.+|++++|||||+|||+.++..+.+.+.++.+.|.|++++||+++++.. ||+++
T Consensus 80 qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~ 151 (157)
T cd00267 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVI 151 (157)
T ss_pred eCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 399999999999999999999999999999999999999999999987668999999999999998 79875
No 310
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.85 E-value=7.7e-21 Score=143.14 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=70.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCc
Q psy4761 53 DPNSLCGQVSGGQQRRISVAVTMM----HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHK 128 (131)
Q Consensus 53 ~~~~~~~~LS~G~~qrl~iaral~----~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dr 128 (131)
..++++.+||+|||||++||++++ .+|+++++||||+|||+..+..+.+.|+++++ +.|||++||+++++..||+
T Consensus 106 ~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~~~~~d~ 184 (197)
T cd03278 106 KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHRKGTMEAADR 184 (197)
T ss_pred ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHhhcce
Confidence 367889999999999999999997 46799999999999999999999999999865 6899999999999877998
Q ss_pred cc
Q psy4761 129 VP 130 (131)
Q Consensus 129 i~ 130 (131)
++
T Consensus 185 v~ 186 (197)
T cd03278 185 LY 186 (197)
T ss_pred EE
Confidence 75
No 311
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.84 E-value=4.4e-21 Score=161.57 Aligned_cols=74 Identities=34% Similarity=0.507 Sum_probs=69.2
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
....+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++. +|+|+|++||+++.+..||||+
T Consensus 454 e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~ 527 (529)
T TIGR02857 454 EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALAERADRIV 527 (529)
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCEEE
Confidence 4566899999999999999999999999999999999999999999999875 5899999999999999999986
No 312
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.84 E-value=7e-21 Score=164.76 Aligned_cols=87 Identities=33% Similarity=0.420 Sum_probs=80.9
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+.+++++++|.|+|++||+++.
T Consensus 127 ~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~ 206 (648)
T PRK10535 127 ELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQV 206 (648)
T ss_pred HHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 567888885 4788999999999999999999999999999999999999999999999999987779999999999999
Q ss_pred HhcCCccc
Q psy4761 123 ARHAHKVP 130 (131)
Q Consensus 123 ~~~~dri~ 130 (131)
+..|||++
T Consensus 207 ~~~~d~i~ 214 (648)
T PRK10535 207 AAQAERVI 214 (648)
T ss_pred HHhCCEEE
Confidence 98899985
No 313
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.84 E-value=8.5e-21 Score=150.12 Aligned_cols=75 Identities=29% Similarity=0.355 Sum_probs=67.0
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHL-RTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l-~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
++++.+||+|||||++|||||+.+|+++||||||+|||+..+..+.+.+ .++. +|.|||++||+++++..||+++
T Consensus 154 ~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~~~d~i~ 229 (282)
T cd03291 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKIL 229 (282)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHHhCCEEE
Confidence 3456899999999999999999999999999999999999999998865 4554 4789999999999987799985
No 314
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.84 E-value=6e-21 Score=163.22 Aligned_cols=76 Identities=25% Similarity=0.407 Sum_probs=70.4
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
..+...+||||||||++|||||+.+|+++||||||+|||+.+.+.+.+.|.++. +|+|+|++||+++.+..||+|+
T Consensus 465 ~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~~~~~d~i~ 540 (585)
T TIGR01192 465 VGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLSTVRNADLVL 540 (585)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHHHHcCCEEE
Confidence 355677899999999999999999999999999999999999999999998874 5899999999999998899986
No 315
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.84 E-value=5.8e-21 Score=160.55 Aligned_cols=88 Identities=26% Similarity=0.429 Sum_probs=81.6
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+.+.+++. ..+.++.+||||+||||.|||+|..+|++|||||||.|+|..++.+++++|++++++|++||++|.+++
T Consensus 383 ~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp 462 (500)
T COG1129 383 RYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP 462 (500)
T ss_pred HHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH
Confidence 466777773 467899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
|+.. ||||.+
T Consensus 463 Ell~~~DRIlV 473 (500)
T COG1129 463 ELLGLSDRILV 473 (500)
T ss_pred HHHhhCCEEEE
Confidence 9986 999963
No 316
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.84 E-value=1.1e-20 Score=143.18 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=71.1
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMH----------SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~----------~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
.++++.+||+||+||+++|||++. +|+++|+||||+|||+..+..+.+.+++++++|.|||++||+++++
T Consensus 117 l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~ 196 (213)
T cd03279 117 LARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELK 196 (213)
T ss_pred hcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHH
Confidence 578899999999999999999985 5789999999999999999999999999977789999999999999
Q ss_pred hc-CCccc
Q psy4761 124 RH-AHKVP 130 (131)
Q Consensus 124 ~~-~dri~ 130 (131)
.. ||++.
T Consensus 197 ~~~~~~i~ 204 (213)
T cd03279 197 ERIPQRLE 204 (213)
T ss_pred HhhCcEEE
Confidence 87 78875
No 317
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.84 E-value=5.3e-21 Score=167.00 Aligned_cols=76 Identities=33% Similarity=0.544 Sum_probs=70.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
.....+||||||||++||||++++|++||||||||+||+.+.+.+.+.|.++. .|+|+|++||++..+.+||||++
T Consensus 604 ~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~ti~~adrIiV 679 (709)
T COG2274 604 GEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLSTIRSADRIIV 679 (709)
T ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccchHhhhccEEEE
Confidence 45566899999999999999999999999999999999999999999999975 57999999999999999999974
No 318
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.84 E-value=7.2e-21 Score=164.24 Aligned_cols=84 Identities=21% Similarity=0.192 Sum_probs=75.9
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.++..+++. ..++++++||||||||++|||||+.+|++|||||||+|||+.+++.+.+.++++ +.|||+||||.+
T Consensus 422 ~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~ 498 (635)
T PRK11147 422 GYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ 498 (635)
T ss_pred HHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH
Confidence 466777884 368899999999999999999999999999999999999999999999999876 459999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+|+
T Consensus 499 ~~~~~~d~i~ 508 (635)
T PRK11147 499 FVDNTVTECW 508 (635)
T ss_pred HHHHhcCEEE
Confidence 9987 99885
No 319
>KOG0055|consensus
Probab=99.84 E-value=3.4e-21 Score=173.58 Aligned_cols=76 Identities=29% Similarity=0.475 Sum_probs=69.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
..+..+||||||||++||||+++||+||||||.||+||.++.+.+.+.|.+.. .|+|+|+|.|.+..+++||.|++
T Consensus 1121 GerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLSTIqnaD~I~V 1196 (1228)
T KOG0055|consen 1121 GERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLSTIQNADVIAV 1196 (1228)
T ss_pred CcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhhhhcCCEEEE
Confidence 34455999999999999999999999999999999999999999999999875 58999999999999999999863
No 320
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.84 E-value=1.1e-20 Score=168.90 Aligned_cols=86 Identities=29% Similarity=0.412 Sum_probs=80.1
Q ss_pred HHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 45 ISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSP--LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 45 ~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p--~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
+++.+|+.+ .++++.+|||||+||+.||+||..+| +++||||||+|||+...+.+.++|+++++.|.|||+|||++
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 467788863 68999999999999999999999997 99999999999999999999999999988899999999999
Q ss_pred hHHhcCCccc
Q psy4761 121 EEARHAHKVP 130 (131)
Q Consensus 121 ~~~~~~dri~ 130 (131)
+++..||+|+
T Consensus 552 ~~i~~aD~vi 561 (943)
T PRK00349 552 DTIRAADYIV 561 (943)
T ss_pred HHHHhCCEEE
Confidence 9998899986
No 321
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.83 E-value=1.2e-20 Score=160.95 Aligned_cols=74 Identities=31% Similarity=0.502 Sum_probs=68.4
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
....+||||||||++||||++++|+++||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+..||||+
T Consensus 467 ~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~~~~D~ii 540 (588)
T PRK13657 467 ERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRNADRIL 540 (588)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHHHhCCEEE
Confidence 3455799999999999999999999999999999999999999999998874 4799999999999999999985
No 322
>PLN03073 ABC transporter F family; Provisional
Probab=99.83 E-value=1.3e-20 Score=164.90 Aligned_cols=84 Identities=23% Similarity=0.244 Sum_probs=75.8
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++||||++.+|++|||||||+|||+.+++.+.+.+.++ .| |||+||||++
T Consensus 609 ~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~ 685 (718)
T PLN03073 609 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH 685 (718)
T ss_pred HHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH
Confidence 577888985 368899999999999999999999999999999999999999999998888765 34 9999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. |||+.
T Consensus 686 ~i~~~~drv~ 695 (718)
T PLN03073 686 LISGSVDELW 695 (718)
T ss_pred HHHHhCCEEE
Confidence 9987 99985
No 323
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.83 E-value=7.5e-21 Score=160.20 Aligned_cols=64 Identities=28% Similarity=0.493 Sum_probs=58.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.++. +++|+|+|||++
T Consensus 466 e~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 466 EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred cccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 3455799999999999999999999999999999999999999999998763 579999999984
No 324
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.83 E-value=1.9e-20 Score=159.26 Aligned_cols=87 Identities=24% Similarity=0.286 Sum_probs=72.8
Q ss_pred HHHHhcCCCC-CC------CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HhhhCCcEEEE
Q psy4761 44 YISLLNGLPD-PN------SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLR-TLSATGVTCII 115 (131)
Q Consensus 44 ~~~~~~~l~~-~~------~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~-~~~~~g~tvi~ 115 (131)
.+++..++.. .+ ....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+. +++..|+|+|+
T Consensus 447 ~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiii 526 (555)
T TIGR01194 447 QYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526 (555)
T ss_pred HHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4566666642 22 2236899999999999999999999999999999999999999988664 45556899999
Q ss_pred EEcChhHHhcCCccc
Q psy4761 116 TTHYIEEARHAHKVP 130 (131)
Q Consensus 116 vtH~~~~~~~~dri~ 130 (131)
+||+++.+..||+|+
T Consensus 527 isH~~~~~~~~d~i~ 541 (555)
T TIGR01194 527 ISHDDQYFELADQII 541 (555)
T ss_pred EeccHHHHHhCCEEE
Confidence 999999988899985
No 325
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=1.6e-20 Score=167.56 Aligned_cols=86 Identities=30% Similarity=0.416 Sum_probs=79.3
Q ss_pred HHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 45 ISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSP--LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 45 ~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p--~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+..+|+.+ .++++.+|||||+||+.||++|+.+| +++||||||+|||+...+.+.+.|++++++|.|||+|||++
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 356677763 58899999999999999999999986 89999999999999999999999999988899999999999
Q ss_pred hHHhcCCccc
Q psy4761 121 EEARHAHKVP 130 (131)
Q Consensus 121 ~~~~~~dri~ 130 (131)
+++..||+|+
T Consensus 550 ~~i~~aD~vi 559 (924)
T TIGR00630 550 ETIRAADYVI 559 (924)
T ss_pred HHHhhCCEEE
Confidence 9998899986
No 326
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.83 E-value=1.6e-20 Score=163.02 Aligned_cols=75 Identities=24% Similarity=0.422 Sum_probs=69.5
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.++. +++|+|+|||+++.+..||||+
T Consensus 596 ~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~~~~D~ii 670 (694)
T TIGR03375 596 GERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLDLVDRII 670 (694)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEE
Confidence 34456899999999999999999999999999999999999999999999875 4799999999999999999986
No 327
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.83 E-value=1.6e-20 Score=159.95 Aligned_cols=75 Identities=29% Similarity=0.442 Sum_probs=69.6
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
+....+||||||||++||||++++|+++||||||++||+...+.+.+.|+++. +|+|+|++||+++.+..||+|+
T Consensus 446 ~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~~~d~i~ 520 (569)
T PRK10789 446 GERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALTEASEIL 520 (569)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHHcCCEEE
Confidence 44567899999999999999999999999999999999999999999999875 5899999999999999999975
No 328
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.83 E-value=2.5e-20 Score=158.00 Aligned_cols=73 Identities=26% Similarity=0.322 Sum_probs=67.2
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChhHHhcCCccc
Q psy4761 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
..+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+.. +.|+|+|++||+++.+..||+|+
T Consensus 447 G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~ 520 (547)
T PRK10522 447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLL 520 (547)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEE
Confidence 35899999999999999999999999999999999999999999987654 35899999999999988899986
No 329
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.83 E-value=1.5e-20 Score=161.92 Aligned_cols=89 Identities=33% Similarity=0.449 Sum_probs=78.4
Q ss_pred HHHHHhcCCC-CCCCCcC------CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEE
Q psy4761 43 WYISLLNGLP-DPNSLCG------QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCII 115 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~------~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~ 115 (131)
..+++.+++. ..|++++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++|+|||+
T Consensus 142 ~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~ 221 (617)
T TIGR00955 142 DEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIIC 221 (617)
T ss_pred HHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3578888885 3677765 59999999999999999999999999999999999999999999999877999999
Q ss_pred EEcChh-HHh-cCCcccC
Q psy4761 116 TTHYIE-EAR-HAHKVPI 131 (131)
Q Consensus 116 vtH~~~-~~~-~~dri~~ 131 (131)
++|+++ ++. .||++++
T Consensus 222 ~~hq~~~~i~~~~D~i~l 239 (617)
T TIGR00955 222 TIHQPSSELFELFDKIIL 239 (617)
T ss_pred EeCCCCHHHHHHhceEEE
Confidence 999985 554 5999863
No 330
>PLN03073 ABC transporter F family; Provisional
Probab=99.83 E-value=1.9e-20 Score=163.82 Aligned_cols=84 Identities=26% Similarity=0.197 Sum_probs=76.1
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.++..+|+. ..++++.+||||||||++||+||+.+|++|||||||++||+.++..+.+.|+++ |.|||+||||++
T Consensus 326 ~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~ 402 (718)
T PLN03073 326 SILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHARE 402 (718)
T ss_pred HHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH
Confidence 356677774 257889999999999999999999999999999999999999999999999886 679999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||+|+
T Consensus 403 ~l~~~~d~i~ 412 (718)
T PLN03073 403 FLNTVVTDIL 412 (718)
T ss_pred HHHHhCCEEE
Confidence 9988 99986
No 331
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.83 E-value=1.9e-20 Score=162.40 Aligned_cols=84 Identities=23% Similarity=0.255 Sum_probs=72.4
Q ss_pred HHHHhcCCCC-CCC---------CcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEE
Q psy4761 44 YISLLNGLPD-PNS---------LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTC 113 (131)
Q Consensus 44 ~~~~~~~l~~-~~~---------~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tv 113 (131)
.+++.+++.. .++ ...+||||||||++||||++++|+++||||||+|||+...+.+.+.+++ .|.|+
T Consensus 556 ~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tv 632 (659)
T TIGR00954 556 QILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITL 632 (659)
T ss_pred HHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEE
Confidence 4566666642 232 3479999999999999999999999999999999999999999988876 38999
Q ss_pred EEEEcChhHHhcCCccc
Q psy4761 114 IITTHYIEEARHAHKVP 130 (131)
Q Consensus 114 i~vtH~~~~~~~~dri~ 130 (131)
|++||+++.+..||++.
T Consensus 633 I~isH~~~~~~~~d~il 649 (659)
T TIGR00954 633 FSVSHRKSLWKYHEYLL 649 (659)
T ss_pred EEEeCchHHHHhCCEEE
Confidence 99999999998899985
No 332
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.8e-20 Score=144.33 Aligned_cols=83 Identities=33% Similarity=0.511 Sum_probs=76.9
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC--CcEEEEEEcCh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT--GVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~--g~tvi~vtH~~ 120 (131)
.+++.+++. ..+++..+||-|||||+.|||||+.+|++|||||||+|||...++.+.+.+.++... +.++|+|||..
T Consensus 154 ~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~ 233 (257)
T COG1119 154 WLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA 233 (257)
T ss_pred HHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch
Confidence 578999996 589999999999999999999999999999999999999999999999999999743 88999999999
Q ss_pred hHHhcC
Q psy4761 121 EEARHA 126 (131)
Q Consensus 121 ~~~~~~ 126 (131)
+++-.|
T Consensus 234 eEi~~~ 239 (257)
T COG1119 234 EEIPPC 239 (257)
T ss_pred hhcccc
Confidence 998763
No 333
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.83 E-value=4.8e-20 Score=142.64 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=68.6
Q ss_pred CCCcCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMM----HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~----~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
++++.+||+|||||++||+|++ .+|+++|+||||+|||+..++.+.+.++++. +|.|||++||+.+..+.|||++
T Consensus 161 ~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~~~d~v~ 239 (251)
T cd03273 161 KESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFNNANVLF 239 (251)
T ss_pred cccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhCCEEE
Confidence 5789999999999999999998 5789999999999999999999999999985 4889999999987777799974
No 334
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=2e-20 Score=140.94 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=71.6
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC---CcEEEEEEcChhHHhc
Q psy4761 53 DPNSLCGQVSGGQQRRISVAVTM----MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT---GVTCIITTHYIEEARH 125 (131)
Q Consensus 53 ~~~~~~~~LS~G~~qrl~iaral----~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~---g~tvi~vtH~~~~~~~ 125 (131)
..++++++||+|||||++||+|+ +.+|+++||||||+|||+..+..+.+.|.++.++ +.||+++||+++++..
T Consensus 102 ~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~ 181 (198)
T cd03276 102 AAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLAS 181 (198)
T ss_pred ccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccccc
Confidence 36789999999999999999999 5899999999999999999999999999997542 4689999999999999
Q ss_pred CCcccC
Q psy4761 126 AHKVPI 131 (131)
Q Consensus 126 ~dri~~ 131 (131)
+|||.+
T Consensus 182 ~d~v~~ 187 (198)
T cd03276 182 SDDVKV 187 (198)
T ss_pred ccceeE
Confidence 999864
No 335
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.82 E-value=3.2e-20 Score=161.16 Aligned_cols=75 Identities=31% Similarity=0.512 Sum_probs=69.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.++++. .|+|+|++||+++.+..||||+
T Consensus 588 ~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~ii 662 (694)
T TIGR01846 588 GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTVRACDRII 662 (694)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHHHhCCEEE
Confidence 44567899999999999999999999999999999999999999999999874 5799999999999999999985
No 336
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.9e-20 Score=157.57 Aligned_cols=75 Identities=29% Similarity=0.537 Sum_probs=69.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
.-...||||||||++|||+|++|.+++||||||.|||+.+.+++++.+.+.. +|+|+|+|||++..+++||||++
T Consensus 470 e~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~le~~drIiv 544 (573)
T COG4987 470 EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGLERMDRIIV 544 (573)
T ss_pred cCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccccHhhcCEEEE
Confidence 3455899999999999999999999999999999999999999999998864 48999999999999999999874
No 337
>PLN03140 ABC transporter G family member; Provisional
Probab=99.82 E-value=3.7e-20 Score=171.49 Aligned_cols=88 Identities=24% Similarity=0.400 Sum_probs=78.3
Q ss_pred HHHHhcCCCC-CCCCc-----CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEE
Q psy4761 44 YISLLNGLPD-PNSLC-----GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~-----~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vt 117 (131)
++++.+++.. .++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|
T Consensus 997 ~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~ 1076 (1470)
T PLN03140 997 EVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1076 (1470)
T ss_pred HHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5788889853 56665 58999999999999999999999999999999999999999999999988899999999
Q ss_pred cChhH-H-hcCCcccC
Q psy4761 118 HYIEE-A-RHAHKVPI 131 (131)
Q Consensus 118 H~~~~-~-~~~dri~~ 131 (131)
|+++. + +.||++.+
T Consensus 1077 Hq~~~~i~~~~D~vll 1092 (1470)
T PLN03140 1077 HQPSIDIFEAFDELLL 1092 (1470)
T ss_pred CCCCHHHHHhCCEEEE
Confidence 99983 4 45999863
No 338
>KOG0057|consensus
Probab=99.82 E-value=1.4e-20 Score=158.70 Aligned_cols=76 Identities=25% Similarity=0.403 Sum_probs=70.5
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
......|||||||||++|||++.+|+|+++|||||+||.++.+.+.+.+.+ ...|+|+|+|-|+++.+.+||+|++
T Consensus 482 GerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~ 557 (591)
T KOG0057|consen 482 GERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIV 557 (591)
T ss_pred hhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEE
Confidence 455668999999999999999999999999999999999999999999998 4568999999999999999999974
No 339
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=9.1e-21 Score=143.73 Aligned_cols=127 Identities=21% Similarity=0.313 Sum_probs=97.5
Q ss_pred CCCCcccceeeeehhhhhcccchhhccCCCCCCCC--CCCcHHHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCC
Q psy4761 3 YQPPEKFQVVSVGLYFRWKGSHLRELFHPTTVPIP--SVYFPWYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSP 79 (131)
Q Consensus 3 ~Q~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p 79 (131)
||.|.+|+..++--......+..+..|+.-..+.. +....++++...++. ..+..+..||.||||++.|+..++.+|
T Consensus 87 FQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P 166 (249)
T COG4674 87 FQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDP 166 (249)
T ss_pred ccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCC
Confidence 89999887766655544332222222211111111 112234688888995 478899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc-CCccc
Q psy4761 80 LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH-AHKVP 130 (131)
Q Consensus 80 ~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~-~dri~ 130 (131)
++|++|||++|+......+..++++.++. +++|++|.|||.++.. |+||+
T Consensus 167 ~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~A~~VT 217 (249)
T COG4674 167 KLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREIADKVT 217 (249)
T ss_pred cEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHhhheeE
Confidence 99999999999999999999999999864 6899999999999998 99886
No 340
>KOG0059|consensus
Probab=99.82 E-value=2.1e-20 Score=166.57 Aligned_cols=89 Identities=35% Similarity=0.623 Sum_probs=83.8
Q ss_pred HHHHHhcCC-CCCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 43 WYISLLNGL-PDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 43 ~~~~~~~~l-~~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
+.+++.+++ +..+++++.||||+|+|+++|.|++.+|++++|||||+|+||.+++.+++++.+++++|++||++||.|+
T Consensus 680 ~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe 759 (885)
T KOG0059|consen 680 EKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME 759 (885)
T ss_pred HHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 357888999 4689999999999999999999999999999999999999999999999999999988779999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
+++. |||++|
T Consensus 760 E~EaLCtR~aI 770 (885)
T KOG0059|consen 760 EAEALCTRTAI 770 (885)
T ss_pred HHHHHhhhhhe
Confidence 9999 999975
No 341
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=6.1e-21 Score=144.89 Aligned_cols=87 Identities=28% Similarity=0.343 Sum_probs=81.4
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
..++.+++.. .+++..+||||||||..||..++.+.+.++||||.++||......+++.+++++++ |+||++|-||++
T Consensus 118 ~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN 197 (252)
T COG4604 118 EAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197 (252)
T ss_pred HHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc
Confidence 5788889965 78999999999999999999999999999999999999999999999999999855 999999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. +|.|+
T Consensus 198 fAS~YsD~IV 207 (252)
T COG4604 198 FASCYSDHIV 207 (252)
T ss_pred HHHhhhhhee
Confidence 9987 99875
No 342
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.82 E-value=3.2e-20 Score=172.02 Aligned_cols=77 Identities=31% Similarity=0.474 Sum_probs=71.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChhHHhcCCcccC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
+..+.+||||||||++|||||+++|++|||||||++||+.....+.+.|+++++ +|+|+|+|||+++.+..||+|++
T Consensus 574 g~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iiv 651 (1466)
T PTZ00265 574 GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFV 651 (1466)
T ss_pred CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEE
Confidence 456789999999999999999999999999999999999999999999999875 58999999999999988999863
No 343
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.82 E-value=7.1e-20 Score=140.25 Aligned_cols=76 Identities=26% Similarity=0.298 Sum_probs=68.0
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMH----SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKV 129 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~----~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri 129 (131)
.++++.+||||||||++||||++. +|+++|+||||+|||+..++.+++.++++++ +.|||++||+.+....||++
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~~~~~~d~i 230 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPELLEVADKF 230 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHhhCCEE
Confidence 467899999999999999999973 5899999999999999999999999999865 78999999997766559998
Q ss_pred c
Q psy4761 130 P 130 (131)
Q Consensus 130 ~ 130 (131)
+
T Consensus 231 ~ 231 (243)
T cd03272 231 Y 231 (243)
T ss_pred E
Confidence 6
No 344
>PLN03232 ABC transporter C family member; Provisional
Probab=99.82 E-value=3.4e-20 Score=172.12 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=69.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
.....+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|+|+|+|+++.+.+||||++
T Consensus 1366 ~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlV 1441 (1495)
T PLN03232 1366 SEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIIDCDKILV 1441 (1495)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEE
Confidence 34456899999999999999999999999999999999999999999998864 57999999999999999999863
No 345
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=3.4e-20 Score=143.41 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=69.2
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHS----PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~----p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
+++.+||+|||||++||+|++.+ |+++|+||||+|||+..+..+.+.|.+++++|.|||++||+.+.+..|||++
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~ 229 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALV 229 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEE
Confidence 44589999999999999999875 8999999999999999999999999998766999999999998887799986
No 346
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=3.7e-20 Score=137.86 Aligned_cols=87 Identities=29% Similarity=0.365 Sum_probs=79.5
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcCh
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~ 120 (131)
.++..++++. ..+.+.+|||||+||++|+|-|...|+||+|||||+.||+.+++.+-++|.++. ++.++++-+|||.
T Consensus 115 ~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~ 194 (223)
T COG4619 115 DLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK 194 (223)
T ss_pred HHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh
Confidence 5788899963 789999999999999999999999999999999999999999999999999986 7799999999999
Q ss_pred hHHh-cCCccc
Q psy4761 121 EEAR-HAHKVP 130 (131)
Q Consensus 121 ~~~~-~~dri~ 130 (131)
+++. .+||++
T Consensus 195 dqa~rha~k~i 205 (223)
T COG4619 195 DQAIRHADKVI 205 (223)
T ss_pred HHHhhhhheEE
Confidence 9955 488763
No 347
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=3.9e-20 Score=141.64 Aligned_cols=89 Identities=25% Similarity=0.298 Sum_probs=79.2
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEE
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMH------SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCII 115 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~------~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~ 115 (131)
...+...++. ...+...+|||||||||.+||.|+. ++++|+|||||++||+..+..+++..++++++|..|+.
T Consensus 117 ~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~ 196 (259)
T COG4559 117 AQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLA 196 (259)
T ss_pred HHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEE
Confidence 3566777774 4677888999999999999999985 45699999999999999999999999999988999999
Q ss_pred EEcChhHHhc-CCcccC
Q psy4761 116 TTHYIEEARH-AHKVPI 131 (131)
Q Consensus 116 vtH~~~~~~~-~dri~~ 131 (131)
|-||++.+.. ||||+.
T Consensus 197 VLHDLNLAA~YaDrivl 213 (259)
T COG4559 197 VLHDLNLAAQYADRIVL 213 (259)
T ss_pred EEccchHHHHhhheeee
Confidence 9999999987 999863
No 348
>PLN03130 ABC transporter C family member; Provisional
Probab=99.81 E-value=3.6e-20 Score=172.88 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=69.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
.....+||||||||++|||||+++|+||||||||++||..+.+.+.+.|++.. +|+|+|+|+|+++.+.+||||++
T Consensus 1369 ge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~~DrIlV 1444 (1622)
T PLN03130 1369 SEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILV 1444 (1622)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHhCCEEEE
Confidence 34456899999999999999999999999999999999999999999999864 47999999999999999999963
No 349
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.81 E-value=8.1e-20 Score=138.14 Aligned_cols=76 Identities=25% Similarity=0.298 Sum_probs=70.5
Q ss_pred CCCcCCCCHHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCHHHHH-HHHHHHHHhhhC-CcEEEEEEcChhHHhcC
Q psy4761 55 NSLCGQVSGGQQRR------ISVAVTMMHSPLLLILDEPTAGLDPLISD-TIWQHLRTLSAT-GVTCIITTHYIEEARHA 126 (131)
Q Consensus 55 ~~~~~~LS~G~~qr------l~iaral~~~p~llilDEPt~gLD~~~~~-~i~~~l~~~~~~-g~tvi~vtH~~~~~~~~ 126 (131)
++++.+||+||+|| +++|||++.+|+++++||||++||+..+. .+.+.+++++++ |.|||++||+++.+..|
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~ 189 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA 189 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhC
Confidence 67889999999996 78999999999999999999999999999 999999998765 88999999999988889
Q ss_pred Cccc
Q psy4761 127 HKVP 130 (131)
Q Consensus 127 dri~ 130 (131)
|++.
T Consensus 190 d~i~ 193 (204)
T cd03240 190 DHIY 193 (204)
T ss_pred CEEE
Confidence 9875
No 350
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.81 E-value=7.8e-20 Score=168.90 Aligned_cols=87 Identities=25% Similarity=0.421 Sum_probs=78.3
Q ss_pred HHHHhcCCCC-CCCCcC----CCCHHHHHHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEE
Q psy4761 44 YISLLNGLPD-PNSLCG----QVSGGQQRRISVAVTMMHSPL-LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~----~LS~G~~qrl~iaral~~~p~-llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vt 117 (131)
++++.+++.. .++.++ +||||||||++||++|+.+|+ +|+|||||+|||+.++..+.+.|++++++|+|||+++
T Consensus 880 ~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~ 959 (1394)
T TIGR00956 880 EVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTI 959 (1394)
T ss_pred HHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 5778888853 677776 799999999999999999997 9999999999999999999999999987899999999
Q ss_pred cChhHH--hcCCccc
Q psy4761 118 HYIEEA--RHAHKVP 130 (131)
Q Consensus 118 H~~~~~--~~~dri~ 130 (131)
|+++.. ..+|++.
T Consensus 960 H~~~~~~~~~~D~vl 974 (1394)
T TIGR00956 960 HQPSAILFEEFDRLL 974 (1394)
T ss_pred cCCCHHHHHhcCEEE
Confidence 999863 4599985
No 351
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.81 E-value=5.9e-20 Score=170.80 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=68.9
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
....+||||||||++|||||+++|+||||||||++||+++.+.+.+.|++.. +++|||+|+|+++.+..||||++
T Consensus 1417 e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~~~DrIlV 1491 (1522)
T TIGR00957 1417 EGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMDYTRVIV 1491 (1522)
T ss_pred CCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEE
Confidence 3456799999999999999999999999999999999999999999998864 57999999999999999999863
No 352
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.81 E-value=1.2e-19 Score=154.22 Aligned_cols=84 Identities=31% Similarity=0.412 Sum_probs=74.9
Q ss_pred HHHHhcCCCCCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 44 YISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 44 ~~~~~~~l~~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
.++.-+|++..++++++||||||.|+++|+||..+|++|+|||||++||..+...+-+.|.++ .| |+|+||||..++
T Consensus 137 ~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FL 213 (530)
T COG0488 137 EALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFL 213 (530)
T ss_pred HHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHH
Confidence 456666775458999999999999999999999999999999999999999999999999865 46 999999999999
Q ss_pred hc-CCccc
Q psy4761 124 RH-AHKVP 130 (131)
Q Consensus 124 ~~-~dri~ 130 (131)
.. |.+|+
T Consensus 214 d~V~t~I~ 221 (530)
T COG0488 214 DNVATHIL 221 (530)
T ss_pred HHHhhheE
Confidence 98 88774
No 353
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.80 E-value=2e-19 Score=160.92 Aligned_cols=87 Identities=25% Similarity=0.326 Sum_probs=80.7
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSP---LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p---~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
..++.+++.+ .++++.+|||||+||+.||++|+.+| +++||||||+|||+..+..+.+.|+++++.|.|||+|||
T Consensus 812 ~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH 891 (943)
T PRK00349 812 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEH 891 (943)
T ss_pred HHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 4667788864 68899999999999999999999999 999999999999999999999999999878999999999
Q ss_pred ChhHHhcCCccc
Q psy4761 119 YIEEARHAHKVP 130 (131)
Q Consensus 119 ~~~~~~~~dri~ 130 (131)
+++++..||+|+
T Consensus 892 ~~~~i~~aD~ii 903 (943)
T PRK00349 892 NLDVIKTADWII 903 (943)
T ss_pred CHHHHHhCCEEE
Confidence 999998899986
No 354
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=8.9e-20 Score=143.77 Aligned_cols=87 Identities=28% Similarity=0.429 Sum_probs=80.7
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
.+.+.+++. ..+.+++.||-|||.|+.+|.||+++|++|+|||||-|||..++..+.+++++.. +.++||+++||+++
T Consensus 139 ~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~ 218 (325)
T COG4586 139 FLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD 218 (325)
T ss_pred HHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchh
Confidence 466777885 4889999999999999999999999999999999999999999999999999997 45999999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
.+.. ||||.
T Consensus 219 di~~lc~rv~ 228 (325)
T COG4586 219 DIATLCDRVL 228 (325)
T ss_pred hHHHhhhheE
Confidence 9998 99985
No 355
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.80 E-value=1.4e-19 Score=137.75 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=74.5
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMH----SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~----~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+.+.++++. .++++..||+|||||++||+|++. +|+++++||||+|||+..+..+.+.+++++ ++.|+|++||
T Consensus 110 ~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~ 188 (212)
T cd03274 110 EVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISL 188 (212)
T ss_pred cEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEEC
Confidence 3556777754 677899999999999999999974 479999999999999999999999999985 4678999999
Q ss_pred ChhHHhcCCcccC
Q psy4761 119 YIEEARHAHKVPI 131 (131)
Q Consensus 119 ~~~~~~~~dri~~ 131 (131)
+.+....|||+++
T Consensus 189 ~~~~~~~~d~v~~ 201 (212)
T cd03274 189 RNNMFELADRLVG 201 (212)
T ss_pred cHHHHHhCCEEEE
Confidence 9766666999864
No 356
>KOG0058|consensus
Probab=99.80 E-value=9.6e-20 Score=157.28 Aligned_cols=76 Identities=33% Similarity=0.539 Sum_probs=70.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
..+..+||||||||++|||||++||++|||||.||+||.++...+.+.+.+..+ |+|||++.|.+..+++||+|++
T Consensus 599 GEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLSTV~~Ad~Ivv 674 (716)
T KOG0058|consen 599 GEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLSTVRHADQIVV 674 (716)
T ss_pred CCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhHhhhccEEEE
Confidence 455669999999999999999999999999999999999999999999988764 5999999999999999999874
No 357
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=3.4e-19 Score=159.22 Aligned_cols=87 Identities=26% Similarity=0.321 Sum_probs=80.2
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhh---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMH---SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~---~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+|+.+ .++++.+|||||+||+.||++|+. +|+++||||||+|||+..+..+.+.|+++.++|.|||++||
T Consensus 810 ~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H 889 (924)
T TIGR00630 810 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEH 889 (924)
T ss_pred HHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4667788864 688999999999999999999997 59999999999999999999999999999878999999999
Q ss_pred ChhHHhcCCccc
Q psy4761 119 YIEEARHAHKVP 130 (131)
Q Consensus 119 ~~~~~~~~dri~ 130 (131)
+++++..||+|+
T Consensus 890 ~~~~i~~aD~ii 901 (924)
T TIGR00630 890 NLDVIKTADYII 901 (924)
T ss_pred CHHHHHhCCEEE
Confidence 999998899986
No 358
>PTZ00243 ABC transporter; Provisional
Probab=99.79 E-value=1.5e-19 Score=168.31 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=67.9
Q ss_pred CcCCCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 57 LCGQVSGGQQRRISVAVTMMHS-PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~~~-p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
...+||||||||++|||||+++ |++|||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+..||||++
T Consensus 1442 ~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlV 1516 (1560)
T PTZ00243 1442 GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHTVAQYDKIIV 1516 (1560)
T ss_pred CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHHHHhCCEEEE
Confidence 4468999999999999999995 89999999999999999999999998864 47999999999999999999863
No 359
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.79 E-value=3.8e-19 Score=165.89 Aligned_cols=86 Identities=28% Similarity=0.431 Sum_probs=78.7
Q ss_pred HHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 45 ISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSP--LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 45 ~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p--~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+..+|+.+ .++++.+|||||+||+.||+||..+| +++||||||+|||+..++.+.+.|+++++.|.|||+||||+
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~ 538 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 356678863 58899999999999999999999999 89999999999999999999999999988899999999999
Q ss_pred hHHhcCCccc
Q psy4761 121 EEARHAHKVP 130 (131)
Q Consensus 121 ~~~~~~dri~ 130 (131)
+.+..||+|+
T Consensus 539 ~vi~~aDrVi 548 (1809)
T PRK00635 539 QMISLADRII 548 (1809)
T ss_pred HHHHhCCEEE
Confidence 9776699986
No 360
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.79 E-value=2.5e-19 Score=165.55 Aligned_cols=88 Identities=24% Similarity=0.311 Sum_probs=76.8
Q ss_pred HHHHhcCCCC-CCC-----CcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEE
Q psy4761 44 YISLLNGLPD-PNS-----LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIIT 116 (131)
Q Consensus 44 ~~~~~~~l~~-~~~-----~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~v 116 (131)
.+++.+|+.. .++ .++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||++
T Consensus 187 ~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~ 266 (1394)
T TIGR00956 187 VYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVA 266 (1394)
T ss_pred HHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4678889953 444 4568999999999999999999999999999999999999999999999986 49999999
Q ss_pred EcCh-hHHhc-CCcccC
Q psy4761 117 THYI-EEARH-AHKVPI 131 (131)
Q Consensus 117 tH~~-~~~~~-~dri~~ 131 (131)
+|++ +++.+ +|+|++
T Consensus 267 ~Hq~~~~i~~l~D~v~~ 283 (1394)
T TIGR00956 267 IYQCSQDAYELFDKVIV 283 (1394)
T ss_pred ecCCCHHHHHhhceEEE
Confidence 9996 56665 999863
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.79 E-value=2.2e-19 Score=166.69 Aligned_cols=72 Identities=25% Similarity=0.417 Sum_probs=67.4
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
..+||||||||++|||||+++|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+..||||+
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~~DrIl 1422 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEALLECQQFL 1422 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEE
Confidence 34799999999999999999999999999999999999999999998864 4799999999999999999986
No 362
>PLN03232 ABC transporter C family member; Provisional
Probab=99.79 E-value=3e-19 Score=165.90 Aligned_cols=74 Identities=20% Similarity=0.383 Sum_probs=65.4
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH-LRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~-l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
....+||||||||++||||++.+|+++||||||++||+...+.+++. +... .+|+|+|++||+++.+..||+|+
T Consensus 736 e~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~l~~aD~Ii 810 (1495)
T PLN03232 736 ERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHFLPLMDRII 810 (1495)
T ss_pred CCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhhHHhCCEEE
Confidence 44558999999999999999999999999999999999998888765 4443 35899999999999999999986
No 363
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.79 E-value=5.4e-19 Score=164.90 Aligned_cols=87 Identities=28% Similarity=0.374 Sum_probs=79.9
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHh---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMM---HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~---~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++.. .++++.+|||||+||++||+||+ .+|+++||||||+|||+..++.+.+.|+++++.|.|||++||
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3567788864 58899999999999999999998 699999999999999999999999999999888999999999
Q ss_pred ChhHHhcCCccc
Q psy4761 119 YIEEARHAHKVP 130 (131)
Q Consensus 119 ~~~~~~~~dri~ 130 (131)
+++++..||+++
T Consensus 871 dl~~i~~aDrVi 882 (1809)
T PRK00635 871 NMHVVKVADYVL 882 (1809)
T ss_pred CHHHHHhCCEEE
Confidence 999996699986
No 364
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.8e-18 Score=129.87 Aligned_cols=86 Identities=30% Similarity=0.445 Sum_probs=77.5
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcCh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~ 120 (131)
.+++.+.++ ..+..|.++|||||||+.|||-|+..|+++++||||.|||...+..+.+.++.+. +-|.++++||||+
T Consensus 133 ~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl 212 (258)
T COG4107 133 DWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred HHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh
Confidence 456777774 3688899999999999999999999999999999999999999999999999997 4599999999999
Q ss_pred hHHhc-CCcc
Q psy4761 121 EEARH-AHKV 129 (131)
Q Consensus 121 ~~~~~-~dri 129 (131)
..+.- +||.
T Consensus 213 ~VarLla~rl 222 (258)
T COG4107 213 AVARLLADRL 222 (258)
T ss_pred HHHHHhhhcc
Confidence 98876 7775
No 365
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.2e-18 Score=134.36 Aligned_cols=125 Identities=25% Similarity=0.290 Sum_probs=99.1
Q ss_pred CCCCCCcccceeeeehhhhhcccchhhccCCCCCCCCCC-CcHHHHHHhcCCC--CCCCCcC-CCCHHHHHHHHHHHHHh
Q psy4761 1 MVYQPPEKFQVVSVGLYFRWKGSHLRELFHPTTVPIPSV-YFPWYISLLNGLP--DPNSLCG-QVSGGQQRRISVAVTMM 76 (131)
Q Consensus 1 ~v~Q~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~--~~~~~~~-~LS~G~~qrl~iaral~ 76 (131)
++||+|..+..|+...|.+...+..+..- .. .+.. ..-.+.++.++++ ..++.++ .+|||||+|..|+.+++
T Consensus 85 LafQ~P~ei~GV~~~~fLr~a~n~~~~~~---~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~ 160 (251)
T COG0396 85 LAFQYPVEIPGVTNSDFLRAAMNARRGAR---GI-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL 160 (251)
T ss_pred EeecCCccCCCeeHHHHHHHHHHhhhccc---cc-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence 47999999899999888775444322210 00 1110 0111467888885 3788887 79999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcC--Ccc
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHA--HKV 129 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~--dri 129 (131)
.+|++.|||||-||||..+-+.+.+.++++++.|.+++++||+-+.+... |++
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~v 215 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKV 215 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEE
Confidence 99999999999999999999999999999998999999999999988873 765
No 366
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.76 E-value=5.6e-18 Score=125.90 Aligned_cols=70 Identities=23% Similarity=0.316 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 61 VSGGQQRRISVAVTMM----HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 61 LS~G~~qrl~iaral~----~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
||+||+||+++||+++ .+|+++|+|||+++||+.....+.+.+.++.+.|.|+|++||+.+.+..+||++
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi 168 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLI 168 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEE
Confidence 9999999999999996 689999999999999999999999999998766899999999999888899875
No 367
>PTZ00243 ABC transporter; Provisional
Probab=99.75 E-value=3.7e-18 Score=159.17 Aligned_cols=78 Identities=23% Similarity=0.312 Sum_probs=68.1
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
.++++.+||||||||++||||++.+|+++||||||++||+...+.+++.+.....+|+|+|++||+++.+..||+|++
T Consensus 776 i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~ 853 (1560)
T PTZ00243 776 IGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVA 853 (1560)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 467789999999999999999999999999999999999999888876542222358999999999999988999863
No 368
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.75 E-value=3.3e-18 Score=159.02 Aligned_cols=76 Identities=30% Similarity=0.403 Sum_probs=68.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH-LRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~-l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
..+..+||||||||++||||++.+|+++||||||+|||+...+.+++. +.++. +|+|+|++||+++.+..||+|++
T Consensus 543 g~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~ad~ii~ 619 (1490)
T TIGR01271 543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEHLKKADKILL 619 (1490)
T ss_pred cCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHHHHhCCEEEE
Confidence 456789999999999999999999999999999999999999999985 56654 58999999999999988999863
No 369
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.75 E-value=2.8e-18 Score=159.71 Aligned_cols=77 Identities=22% Similarity=0.337 Sum_probs=69.8
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh--hCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS--ATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~--~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.++...+||||||||++||||++.+|+++||||||++||+...+.+++.+.+.. .+|+|+|++||+++.+..||+|+
T Consensus 754 ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii 832 (1522)
T TIGR00957 754 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVII 832 (1522)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEE
Confidence 356788999999999999999999999999999999999999999999987542 35799999999999999999986
No 370
>KOG0061|consensus
Probab=99.74 E-value=4.4e-18 Score=146.91 Aligned_cols=89 Identities=33% Similarity=0.488 Sum_probs=77.6
Q ss_pred HHHHHhcCCCC-CCCCcC-----CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEE
Q psy4761 43 WYISLLNGLPD-PNSLCG-----QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIIT 116 (131)
Q Consensus 43 ~~~~~~~~l~~-~~~~~~-----~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~v 116 (131)
+++++.+|+.. .|+.++ .+||||||||+||.-+++||.+|++||||+|||...+.++.+.|++++++|+|||++
T Consensus 147 ~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~t 226 (613)
T KOG0061|consen 147 EEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICT 226 (613)
T ss_pred HHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEE
Confidence 36788899964 677775 599999999999999999999999999999999999999999999999889999999
Q ss_pred EcChh--HHhcCCcccC
Q psy4761 117 THYIE--EARHAHKVPI 131 (131)
Q Consensus 117 tH~~~--~~~~~dri~~ 131 (131)
-|++. .....|++++
T Consensus 227 IHQPss~lf~lFD~l~l 243 (613)
T KOG0061|consen 227 IHQPSSELFELFDKLLL 243 (613)
T ss_pred EeCCcHHHHHHHhHhhh
Confidence 99984 3333777653
No 371
>PLN03140 ABC transporter G family member; Provisional
Probab=99.74 E-value=2.6e-18 Score=159.32 Aligned_cols=89 Identities=21% Similarity=0.299 Sum_probs=78.0
Q ss_pred HHHHHhcCCCC-C-----CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEE
Q psy4761 43 WYISLLNGLPD-P-----NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCII 115 (131)
Q Consensus 43 ~~~~~~~~l~~-~-----~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~ 115 (131)
+.+++.+|+.. . ++.++.|||||||||+||++|+.+|+++++||||+|||+.++..+.+.|+++++ .|.|+|+
T Consensus 313 ~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tvii 392 (1470)
T PLN03140 313 DYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLM 392 (1470)
T ss_pred HHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 35788899953 3 567789999999999999999999999999999999999999999999999975 5899999
Q ss_pred EEcCh-hHHhc-CCcccC
Q psy4761 116 TTHYI-EEARH-AHKVPI 131 (131)
Q Consensus 116 vtH~~-~~~~~-~dri~~ 131 (131)
++|+. +++.. +|+|++
T Consensus 393 s~Hqp~~~i~~lfD~vil 410 (1470)
T PLN03140 393 SLLQPAPETFDLFDDIIL 410 (1470)
T ss_pred EecCCCHHHHHHhheEEE
Confidence 99996 46655 998863
No 372
>PLN03130 ABC transporter C family member; Provisional
Probab=99.73 E-value=7.1e-18 Score=157.67 Aligned_cols=75 Identities=20% Similarity=0.379 Sum_probs=65.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQ-HLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~-~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.....+||||||||++||||++.+|+++||||||++||+...+.+++ .+.... +|+|+|++||+++.+..||+|+
T Consensus 735 Ge~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii 810 (1622)
T PLN03130 735 GERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRII 810 (1622)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEE
Confidence 34456899999999999999999999999999999999998888765 455443 5899999999999999999986
No 373
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.73 E-value=8.3e-18 Score=143.05 Aligned_cols=84 Identities=26% Similarity=0.317 Sum_probs=75.9
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
..+..|+++ ...++++.||||||.|+.+|+.++.+|.+|||||||+.||..+.+.+.+.|.++ ..|||+||||..
T Consensus 421 ~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~ 497 (530)
T COG0488 421 AYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY 497 (530)
T ss_pred HHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH
Confidence 466778885 368899999999999999999999999999999999999999999999999886 358999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.+ |++|.
T Consensus 498 Fl~~va~~i~ 507 (530)
T COG0488 498 FLDRVATRIW 507 (530)
T ss_pred HHHhhcceEE
Confidence 9998 88764
No 374
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.73 E-value=9.8e-18 Score=140.76 Aligned_cols=74 Identities=27% Similarity=0.444 Sum_probs=70.5
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
...||||||||+++||||..+|.+++||||-++||......+.+.|.+.+++|.|+|+|||.+..+..+|+|.+
T Consensus 470 G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilv 543 (580)
T COG4618 470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILV 543 (580)
T ss_pred CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeee
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999853
No 375
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=8.9e-18 Score=125.52 Aligned_cols=87 Identities=26% Similarity=0.314 Sum_probs=79.6
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.++..++++. -+-.|.++||||||||.|||+++.+-+||+|||||++||..++..+.++|.+.+..|.+++=+-||-+
T Consensus 134 ~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee 213 (235)
T COG4778 134 DLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE 213 (235)
T ss_pred HHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH
Confidence 5788888874 57789999999999999999999999999999999999999999999999998888999999999987
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
.=+. |||+.
T Consensus 214 vre~vadR~~ 223 (235)
T COG4778 214 VREAVADRLL 223 (235)
T ss_pred HHHHHhhhee
Confidence 7766 89874
No 376
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.71 E-value=2.7e-17 Score=124.32 Aligned_cols=87 Identities=26% Similarity=0.405 Sum_probs=80.6
Q ss_pred HHHHhcCC-CC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 44 YISLLNGL-PD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l-~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
+-+.++|+ ++ .+-++..||.||||||++||||+.+|+++|.||..++||...+.++.+++.++.+ .|.+.|+|+.++
T Consensus 131 ~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl 210 (267)
T COG4167 131 ETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI 210 (267)
T ss_pred HHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh
Confidence 56788898 54 7889999999999999999999999999999999999999999999999999985 499999999999
Q ss_pred hHHhc-CCccc
Q psy4761 121 EEARH-AHKVP 130 (131)
Q Consensus 121 ~~~~~-~dri~ 130 (131)
-.+++ +|.|+
T Consensus 211 G~iKHi~D~vi 221 (267)
T COG4167 211 GMIKHISDQVL 221 (267)
T ss_pred hHhhhhcccEE
Confidence 99998 88775
No 377
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=2.3e-17 Score=126.73 Aligned_cols=78 Identities=28% Similarity=0.496 Sum_probs=71.8
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChhHHhc-CCccc
Q psy4761 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIEEARH-AHKVP 130 (131)
Q Consensus 53 ~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~~~~~-~dri~ 130 (131)
..+.+++-|||||||-++++.|.++.|++|+|||.|++|||.....+++.=.++.+ .+.|.+||||+|+.+-+ .+|.+
T Consensus 141 rL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlI 220 (263)
T COG1101 141 RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLI 220 (263)
T ss_pred hhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEE
Confidence 36889999999999999999999999999999999999999999999999999874 58899999999999876 77754
No 378
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=1.2e-17 Score=122.72 Aligned_cols=86 Identities=26% Similarity=0.388 Sum_probs=75.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLR-TLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~-~~~~~g~tvi~vtH~~~ 121 (131)
..++..++. ..++-|.+||||||-|+++.|+|+..|+.++||||+|.||..-+.++.+..- +.++.|...++||||..
T Consensus 117 aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 117 AALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 467888885 4788899999999999999999999999999999999999999999998874 45677999999999999
Q ss_pred HHhcCCcc
Q psy4761 122 EARHAHKV 129 (131)
Q Consensus 122 ~~~~~dri 129 (131)
.+....||
T Consensus 197 DvpagsrV 204 (213)
T COG4136 197 DVPAGSRV 204 (213)
T ss_pred cCCCCCee
Confidence 88765554
No 379
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.70 E-value=3e-17 Score=125.09 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=65.1
Q ss_pred CCCCcCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-C-cEEEEEEcChhHHhc-C
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTM----MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-G-VTCIITTHYIEEARH-A 126 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral----~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g-~tvi~vtH~~~~~~~-~ 126 (131)
.+..+.+||+||||++.+++++ +.+|+++|+||||+|||+..+..+.+.+.+++++ | .|+|++||++..... |
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~ 199 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH 199 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence 4567889999999998877654 4799999999999999999999999999998765 5 589999999877665 7
Q ss_pred Ccc
Q psy4761 127 HKV 129 (131)
Q Consensus 127 dri 129 (131)
|++
T Consensus 200 ~~~ 202 (213)
T cd03277 200 EKM 202 (213)
T ss_pred Cce
Confidence 764
No 380
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.70 E-value=6.1e-17 Score=118.07 Aligned_cols=72 Identities=31% Similarity=0.361 Sum_probs=66.5
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 59 GQVSGGQQRRISVAVTMMH----SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 59 ~~LS~G~~qrl~iaral~~----~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.+||+||+||+++++++.. +|+++|+|||++|+|+.....+.+.+.++..+|.++|++||+.+....+||++
T Consensus 76 ~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~ 151 (162)
T cd03227 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLI 151 (162)
T ss_pred eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEE
Confidence 4699999999999999987 78999999999999999999999999988655899999999999998899875
No 381
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=7.3e-17 Score=121.37 Aligned_cols=84 Identities=30% Similarity=0.311 Sum_probs=76.1
Q ss_pred CcHHHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 40 YFPWYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 40 ~~~~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
...|+.+..+|+. ..|.++.+||.|||+|++|||-.+..++++|||||+++||......+...+.....+|..||++||
T Consensus 109 ~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttH 188 (209)
T COG4133 109 ATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188 (209)
T ss_pred hhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3456789999996 489999999999999999999999999999999999999999999999999888788889999999
Q ss_pred ChhHH
Q psy4761 119 YIEEA 123 (131)
Q Consensus 119 ~~~~~ 123 (131)
+.--+
T Consensus 189 q~l~~ 193 (209)
T COG4133 189 QPLPI 193 (209)
T ss_pred CccCC
Confidence 87544
No 382
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=8.5e-17 Score=126.44 Aligned_cols=72 Identities=24% Similarity=0.303 Sum_probs=64.5
Q ss_pred cCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 58 CGQVSGGQQRRISVAVTMMH----SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~----~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
...||+||+||+++|++++. +|+++++||||+|||+.....+.+.++++.+ +.|+|++||++.....||+++
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~~~~~~d~~~ 243 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQVAAMADNHF 243 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHHHHHhcCcEE
Confidence 44599999999999997654 9999999999999999999999999998854 789999999999777799875
No 383
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=1.9e-16 Score=143.14 Aligned_cols=79 Identities=19% Similarity=0.163 Sum_probs=73.0
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 53 DPNSLCGQVSGGQQRRISVAVTMMH----------SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 53 ~~~~~~~~LS~G~~qrl~iaral~~----------~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
..++++++|||||++|++||+||+. +|++||+||||+|||+.....+++.|.++...|++|++|||++++
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF 1022 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 3567899999999999999999986 799999999999999999999999999998789999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
... ||+|.+
T Consensus 1023 ~~~~~~~i~v 1032 (1042)
T TIGR00618 1023 RERIPHRILV 1032 (1042)
T ss_pred HHhhCCEEEE
Confidence 988 888753
No 384
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=3.7e-16 Score=121.25 Aligned_cols=87 Identities=20% Similarity=0.218 Sum_probs=81.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
++.++-+|. ..+.|++++|.||+-|++++.|...+|++||+||-.+--|+..+++-.+.+.++.+++.|||+||||++.
T Consensus 130 eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~ 209 (249)
T COG1134 130 EIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGA 209 (249)
T ss_pred HHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 567777774 5899999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.+ |||++
T Consensus 210 I~~~Cd~~i 218 (249)
T COG1134 210 IKQYCDRAI 218 (249)
T ss_pred HHHhcCeeE
Confidence 998 99975
No 385
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.65 E-value=2e-16 Score=133.82 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=66.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMM----------HSPLLLILDEPT-AGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~----------~~p~llilDEPt-~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
+.++.+|||||+||++||+||+ .+|+++|||||| ++||+.....+.+.|.++ .|.|||++||+.+..
T Consensus 463 ~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~~ 540 (562)
T PHA02562 463 DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHDP 540 (562)
T ss_pred ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhch
Confidence 4467899999999999999987 599999999998 789999999999999998 588999999998877
Q ss_pred hcCCccc
Q psy4761 124 RHAHKVP 130 (131)
Q Consensus 124 ~~~dri~ 130 (131)
..|||++
T Consensus 541 ~~~d~~~ 547 (562)
T PHA02562 541 QKFDRHL 547 (562)
T ss_pred hhhhcEE
Confidence 7799875
No 386
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.65 E-value=4.1e-16 Score=133.38 Aligned_cols=71 Identities=28% Similarity=0.323 Sum_probs=66.0
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 59 GQVSGGQQRRISVAVTMMHS----PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 59 ~~LS~G~~qrl~iaral~~~----p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
..|||||+||++||++++.. |+++|+|||++|||+..+..+.+.|+++.+ |.|||+|||++..+..||+++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~~~~~ad~~~ 513 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQVAAHADAHF 513 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHHhcCeEE
Confidence 58999999999999999985 699999999999999999999999999864 899999999999998899875
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.64 E-value=3.8e-16 Score=130.30 Aligned_cols=87 Identities=21% Similarity=0.287 Sum_probs=80.3
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
++.+.++|.. .++-+++|||||-||++||.+++++.+++++||||+-||...+-...+.++++.+.+++||+|.||+..
T Consensus 196 evve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLav 275 (591)
T COG1245 196 EVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAV 275 (591)
T ss_pred HHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHH
Confidence 5778888864 789999999999999999999999999999999999999999999999999998879999999999998
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. +|-|.
T Consensus 276 LD~lsD~vh 284 (591)
T COG1245 276 LDYLSDFVH 284 (591)
T ss_pred HHHhhheeE
Confidence 887 77664
No 388
>KOG0054|consensus
Probab=99.64 E-value=1.7e-16 Score=145.49 Aligned_cols=78 Identities=26% Similarity=0.388 Sum_probs=69.8
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
...+.-+||||||||+++|||+..+.++++||.|+|++|....+.+++..-+-.-+++|+|+|||.++.+.+||.|++
T Consensus 637 IGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iiv 714 (1381)
T KOG0054|consen 637 IGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIV 714 (1381)
T ss_pred ecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEE
Confidence 356777999999999999999999999999999999999999999887766444468999999999999999999864
No 389
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.64 E-value=3.7e-17 Score=125.98 Aligned_cols=87 Identities=24% Similarity=0.430 Sum_probs=80.1
Q ss_pred HHHHhcCCCC----CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEc
Q psy4761 44 YISLLNGLPD----PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~----~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH 118 (131)
+++..+|+.+ ...++.+|.-||-|+|.||.|++++|++||.||||+++++..+.+++.++.++. .+|.||+++||
T Consensus 138 eLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~ 217 (330)
T COG4170 138 ELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217 (330)
T ss_pred HHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcc
Confidence 5788889853 467899999999999999999999999999999999999999999999999997 46999999999
Q ss_pred ChhHHhc-CCccc
Q psy4761 119 YIEEARH-AHKVP 130 (131)
Q Consensus 119 ~~~~~~~-~dri~ 130 (131)
|+..+.+ ||+|.
T Consensus 218 Dl~~is~W~d~i~ 230 (330)
T COG4170 218 DLQMISQWADKIN 230 (330)
T ss_pred cHHHHHHHhhheE
Confidence 9999988 99874
No 390
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.64 E-value=7.2e-16 Score=134.98 Aligned_cols=87 Identities=26% Similarity=0.328 Sum_probs=80.6
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSP---LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p---~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
..+..+||.+ ..++..+|||||.||+-+|.-|.... -++||||||+||-....+++++.|.++.+.|.|||++.|
T Consensus 804 qtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEH 883 (935)
T COG0178 804 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEH 883 (935)
T ss_pred HHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 3456678864 68999999999999999999999877 999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCccc
Q psy4761 119 YIEEARHAHKVP 130 (131)
Q Consensus 119 ~~~~~~~~dri~ 130 (131)
+++.+..||+|+
T Consensus 884 NLdVIk~AD~II 895 (935)
T COG0178 884 NLDVIKTADWII 895 (935)
T ss_pred ccceEeecCEEE
Confidence 999999999985
No 391
>KOG0062|consensus
Probab=99.63 E-value=4.9e-16 Score=130.67 Aligned_cols=82 Identities=27% Similarity=0.326 Sum_probs=70.8
Q ss_pred HHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 45 ISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 45 ~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
++.-+|+.. ..++.++||||-|-|+++||||..+|+||+|||||+.||..+..-+-+.|..+ +.|+|+||||-++
T Consensus 181 ~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~F 257 (582)
T KOG0062|consen 181 ILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDRNF 257 (582)
T ss_pred HHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccHHH
Confidence 455677742 57899999999999999999999999999999999999999998888888765 4799999999998
Q ss_pred Hhc-CCcc
Q psy4761 123 ARH-AHKV 129 (131)
Q Consensus 123 ~~~-~dri 129 (131)
+.. |--|
T Consensus 258 Ln~V~tdI 265 (582)
T KOG0062|consen 258 LNTVCTDI 265 (582)
T ss_pred HHHHHHHH
Confidence 876 5433
No 392
>PRK03918 chromosome segregation protein; Provisional
Probab=99.62 E-value=1.4e-15 Score=134.49 Aligned_cols=77 Identities=26% Similarity=0.238 Sum_probs=67.8
Q ss_pred CCCCcCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCC
Q psy4761 54 PNSLCGQVSGGQQR------RISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAH 127 (131)
Q Consensus 54 ~~~~~~~LS~G~~q------rl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~d 127 (131)
.+.++..|||||++ |+++|++++.+|+++|+||||+|||+..+..+.++|..+...|.|||+|||+.+....||
T Consensus 782 ~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d 861 (880)
T PRK03918 782 KERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAAD 861 (880)
T ss_pred CcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCC
Confidence 45788999999999 455566788999999999999999999999999999988766789999999998776699
Q ss_pred ccc
Q psy4761 128 KVP 130 (131)
Q Consensus 128 ri~ 130 (131)
+++
T Consensus 862 ~~~ 864 (880)
T PRK03918 862 YVI 864 (880)
T ss_pred eEE
Confidence 875
No 393
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.61 E-value=1.7e-15 Score=126.76 Aligned_cols=88 Identities=23% Similarity=0.381 Sum_probs=81.9
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+.+.++.. ....++.+||||++||+-+||-|..+|++||+-+||.|||..+.+.+.+.|.+.++.|++|+++|-|++
T Consensus 385 ~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD 464 (501)
T COG3845 385 ELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD 464 (501)
T ss_pred HHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH
Confidence 577888884 367789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||..
T Consensus 465 Eil~lsDrIaV 475 (501)
T COG3845 465 EILELSDRIAV 475 (501)
T ss_pred HHHHhhheeee
Confidence 9988 999863
No 394
>KOG0927|consensus
Probab=99.61 E-value=8e-16 Score=130.01 Aligned_cols=84 Identities=29% Similarity=0.328 Sum_probs=75.3
Q ss_pred HHHHhcCCC-C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.++..+|+. + ...+.++||.|||.||.+|+.++.+|.+|+|||||+|||......+.+.|.++ ..+||+||||..
T Consensus 491 ~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr 567 (614)
T KOG0927|consen 491 SILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR 567 (614)
T ss_pred HHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh
Confidence 578899995 4 67889999999999999999999999999999999999999999999999876 347999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
.+.+ +++|.
T Consensus 568 lI~qVaeEi~ 577 (614)
T KOG0927|consen 568 LISQVAEEIW 577 (614)
T ss_pred HHHHHHHHhH
Confidence 9987 77653
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.60 E-value=1.1e-15 Score=127.47 Aligned_cols=87 Identities=23% Similarity=0.277 Sum_probs=79.2
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
++.+-+++++ .++++.+|||||.|||+||.+|..++++++||||++.||.+.+-.+.+.|+++.+ .++|.++|.||+-
T Consensus 438 ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~ 517 (591)
T COG1245 438 EIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIY 517 (591)
T ss_pred hhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEeccee
Confidence 5666677754 7899999999999999999999999999999999999999999999999999975 5899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
.+.. +||+.
T Consensus 518 ~~dyvsDr~i 527 (591)
T COG1245 518 MIDYVSDRLI 527 (591)
T ss_pred hhhhhhceEE
Confidence 9887 89875
No 396
>PRK10869 recombination and repair protein; Provisional
Probab=99.60 E-value=3.6e-15 Score=127.56 Aligned_cols=71 Identities=25% Similarity=0.353 Sum_probs=65.1
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 59 GQVSGGQQRRISVAVTMMH----SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 59 ~~LS~G~~qrl~iaral~~----~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
+.|||||+||++||++++. +|+++|+|||++|||......+.+.++++.+ +.+||+|||++..+..||+.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~~~~~ad~~~ 503 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQVAGCGHQHF 503 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHhCCEEE
Confidence 4699999999999999997 5899999999999999999999999999864 689999999999887798754
No 397
>KOG0062|consensus
Probab=99.60 E-value=2.5e-15 Score=126.43 Aligned_cols=82 Identities=26% Similarity=0.332 Sum_probs=72.0
Q ss_pred HHHhcCCC-C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 45 ISLLNGLP-D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 45 ~~~~~~l~-~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
-+..+|++ . ...++..||||||-||++|.+...+|-+|+|||||+.||..+...+.+.|+.+ +..||+||||.++
T Consensus 465 hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~f 541 (582)
T KOG0062|consen 465 HLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEF 541 (582)
T ss_pred HHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHH
Confidence 35778885 2 56668999999999999999999999999999999999999999998888876 3469999999999
Q ss_pred Hhc-CCcc
Q psy4761 123 ARH-AHKV 129 (131)
Q Consensus 123 ~~~-~dri 129 (131)
+.. |+.+
T Consensus 542 i~~~c~E~ 549 (582)
T KOG0062|consen 542 ISSLCKEL 549 (582)
T ss_pred HhhcCcee
Confidence 987 8765
No 398
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.2e-15 Score=126.23 Aligned_cols=73 Identities=32% Similarity=0.513 Sum_probs=68.0
Q ss_pred CcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
..-.|||||||||+|||+++.+|+++++||.||+||....+.+...|++.. .|+|-+++.|.+..+.+||.|+
T Consensus 396 rglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti~~adeii 468 (497)
T COG5265 396 RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTIIDADEII 468 (497)
T ss_pred heeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhccCCceEE
Confidence 344799999999999999999999999999999999999999999999875 6889999999999999999986
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.59 E-value=3.2e-15 Score=112.28 Aligned_cols=76 Identities=25% Similarity=0.228 Sum_probs=65.9
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIW-QHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~-~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.+...+.+|+||+|+..+++++ .+|+++++|||++|+|+.....+. ..++++.+.|.|+|++||+.+....||++.
T Consensus 85 l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~ 161 (200)
T cd03280 85 IEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKRE 161 (200)
T ss_pred hhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCC
Confidence 5667889999999999999884 899999999999999999999986 467777767899999999976666688865
No 400
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.58 E-value=6.8e-15 Score=133.40 Aligned_cols=72 Identities=26% Similarity=0.239 Sum_probs=66.2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMH--------SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~--------~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
.++++.+|||||+++++||+||+. +|+++|+||||+|||+.....+++.|..+.+.|+||++|||..+...+
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence 457899999999999999999996 899999999999999999999999999998889999999997766554
No 401
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.58 E-value=4.1e-15 Score=133.17 Aligned_cols=76 Identities=24% Similarity=0.261 Sum_probs=68.8
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMM----HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKV 129 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~----~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri 129 (131)
.+.++..|||||+++++||++++ .+|+++||||||+|||+.....+.++|.++.+ +.+||+|||++..+..||++
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~~~~~d~~ 1161 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGTMEVADQL 1161 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhHHHHhhhH
Confidence 46788999999999999999985 57799999999999999999999999999864 47899999999998889998
Q ss_pred c
Q psy4761 130 P 130 (131)
Q Consensus 130 ~ 130 (131)
+
T Consensus 1162 ~ 1162 (1179)
T TIGR02168 1162 Y 1162 (1179)
T ss_pred e
Confidence 5
No 402
>KOG0927|consensus
Probab=99.57 E-value=5.2e-15 Score=125.15 Aligned_cols=75 Identities=24% Similarity=0.272 Sum_probs=67.2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc-CCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH-AHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~-~dri~ 130 (131)
.++++.+||||+|.|+++||+|..+|++|+|||||+|||+.++.-+-+.|.++.. + ++++++|..+.+.. |-.|+
T Consensus 215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh~QDfln~vCT~Ii 290 (614)
T KOG0927|consen 215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSHSQDFLNGVCTNII 290 (614)
T ss_pred HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEecchhhhhhHhhhhh
Confidence 6788999999999999999999999999999999999999999999988887632 2 89999999999987 76553
No 403
>PRK01156 chromosome segregation protein; Provisional
Probab=99.56 E-value=1.5e-14 Score=128.84 Aligned_cols=75 Identities=24% Similarity=0.218 Sum_probs=65.8
Q ss_pred CCcCCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hC-C-cEEEEEEcChhHHhcC
Q psy4761 56 SLCGQVSGGQQRRISV------AVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-AT-G-VTCIITTHYIEEARHA 126 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~i------aral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~-g-~tvi~vtH~~~~~~~~ 126 (131)
.++..|||||+++++| |++++.+|++++|||||+|||+.....+.+++.... .. | .|||++||+.+.+..|
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 4688999999999975 599999999999999999999999999999998643 33 3 4899999999988779
Q ss_pred Cccc
Q psy4761 127 HKVP 130 (131)
Q Consensus 127 dri~ 130 (131)
|+++
T Consensus 877 d~ii 880 (895)
T PRK01156 877 DVAY 880 (895)
T ss_pred CeEE
Confidence 9885
No 404
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=1.7e-14 Score=133.17 Aligned_cols=70 Identities=24% Similarity=0.315 Sum_probs=63.3
Q ss_pred CCcCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-----hCCcEEEEEEcChhHHh
Q psy4761 56 SLCGQVSGGQQR------RISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-----ATGVTCIITTHYIEEAR 124 (131)
Q Consensus 56 ~~~~~LS~G~~q------rl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-----~~g~tvi~vtH~~~~~~ 124 (131)
...+.|||||+| |++||+|++.+|++|+|||||+|||+.....+.+.|..+. ..|.|||+||||++++.
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 345799999999 9999999999999999999999999999999999998873 23789999999999987
Q ss_pred c
Q psy4761 125 H 125 (131)
Q Consensus 125 ~ 125 (131)
.
T Consensus 1275 ~ 1275 (1311)
T TIGR00606 1275 L 1275 (1311)
T ss_pred H
Confidence 6
No 405
>KOG0054|consensus
Probab=99.54 E-value=1.2e-14 Score=133.62 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=67.4
Q ss_pred CcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
-..++|-||||.+++||||+++++||+|||.|+++|+++-..|.+.|++-- +++|||.+.|.++.+.+||||.
T Consensus 1272 gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~TVmd~DrVl 1344 (1381)
T KOG0054|consen 1272 GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNTVMDSDRVL 1344 (1381)
T ss_pred CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccchhhhcCeEE
Confidence 345899999999999999999999999999999999999999999998743 4699999999999999999986
No 406
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.52 E-value=3.4e-15 Score=112.26 Aligned_cols=86 Identities=26% Similarity=0.417 Sum_probs=75.8
Q ss_pred HHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhh-----C--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEE
Q psy4761 44 YISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMH-----S--PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCII 115 (131)
Q Consensus 44 ~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~-----~--p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~ 115 (131)
++...+++.+ ..+.+++|||||-|||-+|..++. | .+++++|||.++||...+..+...+.+++..|.+|||
T Consensus 108 ~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vim 187 (248)
T COG4138 108 DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVM 187 (248)
T ss_pred HHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEE
Confidence 4667788864 788899999999999999988764 4 4899999999999999999999999999999999999
Q ss_pred EEcChhHHhc-CCcc
Q psy4761 116 TTHYIEEARH-AHKV 129 (131)
Q Consensus 116 vtH~~~~~~~-~dri 129 (131)
++||++...+ ||++
T Consensus 188 s~HDLNhTLrhA~~~ 202 (248)
T COG4138 188 SSHDLNHTLRHAHRA 202 (248)
T ss_pred eccchhhHHHHHHHH
Confidence 9999997765 8875
No 407
>KOG0056|consensus
Probab=99.51 E-value=1e-14 Score=122.98 Aligned_cols=74 Identities=28% Similarity=0.444 Sum_probs=67.7
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.+.-.|||||||||+|||+++.+|.+++|||.||+||....+.+...+.++++ |+|-|+|.|.+..+-+||-|.
T Consensus 670 ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLSTivnAD~IL 743 (790)
T KOG0056|consen 670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLSTIVNADLIL 743 (790)
T ss_pred hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehheecccEEE
Confidence 34458999999999999999999999999999999999999999999999875 678889999999999999764
No 408
>KOG0065|consensus
Probab=99.49 E-value=9e-15 Score=133.01 Aligned_cols=89 Identities=29% Similarity=0.405 Sum_probs=77.3
Q ss_pred HHHHHHhcCCC-CCCCCcCC----CCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEE
Q psy4761 42 PWYISLLNGLP-DPNSLCGQ----VSGGQQRRISVAVTMMHSP-LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCII 115 (131)
Q Consensus 42 ~~~~~~~~~l~-~~~~~~~~----LS~G~~qrl~iaral~~~p-~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~ 115 (131)
-+++++.++|+ ..+..++. ||.+||||+.||--|+.|| .||+|||||||||..++..+++.++++++.|.||+.
T Consensus 906 Ve~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlC 985 (1391)
T KOG0065|consen 906 VEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILC 985 (1391)
T ss_pred HHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEE
Confidence 34678888985 35555554 9999999999999999999 999999999999999999999999999999999999
Q ss_pred EEcChh--HHhcCCccc
Q psy4761 116 TTHYIE--EARHAHKVP 130 (131)
Q Consensus 116 vtH~~~--~~~~~dri~ 130 (131)
+-|++. ..+..||+.
T Consensus 986 TIHQPS~~ife~FD~LL 1002 (1391)
T KOG0065|consen 986 TIHQPSIDIFEAFDELL 1002 (1391)
T ss_pred EecCCcHHHHHHHhHHH
Confidence 999985 345578764
No 409
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.46 E-value=1.7e-13 Score=123.25 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=68.2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMH----SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKV 129 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~----~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri 129 (131)
..+++..||||||++++||++|+. +|+++|||||++|||+..+..+.++|.++.. +.++|++||+...+..||++
T Consensus 1068 ~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~~~~d~~ 1146 (1164)
T TIGR02169 1068 PVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMIEYADRA 1146 (1164)
T ss_pred CCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHHHhccee
Confidence 356788999999999999999985 7899999999999999999999999998754 47899999999888779987
Q ss_pred c
Q psy4761 130 P 130 (131)
Q Consensus 130 ~ 130 (131)
+
T Consensus 1147 ~ 1147 (1164)
T TIGR02169 1147 I 1147 (1164)
T ss_pred E
Confidence 5
No 410
>PRK02224 chromosome segregation protein; Provisional
Probab=99.44 E-value=2.2e-13 Score=120.95 Aligned_cols=76 Identities=26% Similarity=0.310 Sum_probs=66.5
Q ss_pred CCCcCCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCc-EEEEEEcChh
Q psy4761 55 NSLCGQVSGGQQR------RISVAVTMMHS-----P-LLLILDEPTAGLDPLISDTIWQHLRTLSATGV-TCIITTHYIE 121 (131)
Q Consensus 55 ~~~~~~LS~G~~q------rl~iaral~~~-----p-~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~-tvi~vtH~~~ 121 (131)
...+..||||||+ |++++++++.+ | +++|+||||++||+.....+.++|..+...|. +||++||+.+
T Consensus 776 ~~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~ 855 (880)
T PRK02224 776 PLEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE 855 (880)
T ss_pred ccChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH
Confidence 3457899999999 88999998864 3 67999999999999999999999999876564 8999999999
Q ss_pred HHhcCCccc
Q psy4761 122 EARHAHKVP 130 (131)
Q Consensus 122 ~~~~~dri~ 130 (131)
.+..||+++
T Consensus 856 ~~~~ad~~~ 864 (880)
T PRK02224 856 LVGAADDLV 864 (880)
T ss_pred HHHhcCeeE
Confidence 998899876
No 411
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.40 E-value=1.3e-12 Score=114.72 Aligned_cols=85 Identities=28% Similarity=0.418 Sum_probs=77.4
Q ss_pred HHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 46 SLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHS--PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 46 ~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~--p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
+..+||.+ .++...+|||||.||+-+|.-+=.+ -=+++||||+.||-+..-+++.+.|+++++.|-|+|+|.||.+
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed 544 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED 544 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 44567765 6899999999999999999999765 4689999999999999999999999999999999999999999
Q ss_pred HHhcCCccc
Q psy4761 122 EARHAHKVP 130 (131)
Q Consensus 122 ~~~~~dri~ 130 (131)
.+..||+|+
T Consensus 545 ti~~AD~iI 553 (935)
T COG0178 545 TIRAADHII 553 (935)
T ss_pred HHhhcCEEE
Confidence 999999985
No 412
>KOG0066|consensus
Probab=99.39 E-value=4e-13 Score=112.55 Aligned_cols=77 Identities=27% Similarity=0.316 Sum_probs=64.8
Q ss_pred HHhcCCC-CCC-CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 46 SLLNGLP-DPN-SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 46 ~~~~~l~-~~~-~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
+..+|+. .++ -.+.+|||||+.||++|-.-+..|++|||||||++||+.+...+.+.|+++. ..||+||||-..+
T Consensus 688 LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~---GgVi~VsHDeRLi 764 (807)
T KOG0066|consen 688 LGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN---GGVIMVSHDERLI 764 (807)
T ss_pred hhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc---CcEEEEeccccee
Confidence 3445553 223 2577999999999999999999999999999999999999999999998873 4689999999887
Q ss_pred hc
Q psy4761 124 RH 125 (131)
Q Consensus 124 ~~ 125 (131)
.+
T Consensus 765 ~e 766 (807)
T KOG0066|consen 765 VE 766 (807)
T ss_pred ee
Confidence 65
No 413
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.38 E-value=1.5e-12 Score=96.89 Aligned_cols=82 Identities=20% Similarity=0.139 Sum_probs=60.6
Q ss_pred HHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhhhC-CcEEEEEEcChh
Q psy4761 45 ISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIW-QHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 45 ~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~-~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
++..++.. ..++..+++|+|++|...+.+. +.+|+++|+|||++|+|+.....+. .+++.+.++ |.++|++||+.+
T Consensus 45 il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~ 123 (185)
T smart00534 45 IFTRIGASDSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE 123 (185)
T ss_pred EEEEeCCCCchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 34555554 3667788999988874333332 3499999999999999999877764 556666664 899999999997
Q ss_pred HHhcCC
Q psy4761 122 EARHAH 127 (131)
Q Consensus 122 ~~~~~d 127 (131)
....||
T Consensus 124 l~~~~~ 129 (185)
T smart00534 124 LTKLAD 129 (185)
T ss_pred HHHHhh
Confidence 665565
No 414
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.38 E-value=4.9e-13 Score=93.63 Aligned_cols=46 Identities=35% Similarity=0.592 Sum_probs=38.2
Q ss_pred HHHHhcCCCC-----CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy4761 44 YISLLNGLPD-----PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTA 89 (131)
Q Consensus 44 ~~~~~~~l~~-----~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~ 89 (131)
.+++.+++.. .++++..||+|||||++||+|++.+|+++||||||+
T Consensus 87 ~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 87 EVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 4566666532 344559999999999999999999999999999996
No 415
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.38 E-value=9.6e-13 Score=113.15 Aligned_cols=79 Identities=29% Similarity=0.376 Sum_probs=65.5
Q ss_pred HHHhcCCCC-------CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEE
Q psy4761 45 ISLLNGLPD-------PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117 (131)
Q Consensus 45 ~~~~~~l~~-------~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vt 117 (131)
.+..++|++ .++--..||+|||||+++||.++++|++++|||-|++||+.....+++.+++-. .+.|||-|+
T Consensus 493 vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~ 571 (604)
T COG4178 493 VLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVG 571 (604)
T ss_pred HHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEec
Confidence 455666642 233445899999999999999999999999999999999999999999998732 479999999
Q ss_pred cChhHHh
Q psy4761 118 HYIEEAR 124 (131)
Q Consensus 118 H~~~~~~ 124 (131)
|......
T Consensus 572 Hr~tl~~ 578 (604)
T COG4178 572 HRPTLWN 578 (604)
T ss_pred cchhhHH
Confidence 9876544
No 416
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.37 E-value=1.8e-12 Score=99.44 Aligned_cols=82 Identities=23% Similarity=0.227 Sum_probs=62.2
Q ss_pred HHHhcCCCCCCCCcCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEc
Q psy4761 45 ISLLNGLPDPNSLCGQVSGGQQRRISVAVTM--MHSPLLLILDEP---TAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118 (131)
Q Consensus 45 ~~~~~~l~~~~~~~~~LS~G~~qrl~iaral--~~~p~llilDEP---t~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH 118 (131)
++..+++. +...+.+|.|+++++.+++++ +.+|+++||||| |+++|+..... ..++.+.+ .|.++|++||
T Consensus 76 il~~~~l~--d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vlisTH 151 (222)
T cd03285 76 ILARVGAS--DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCLFATH 151 (222)
T ss_pred eEeeeccc--cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEEEEec
Confidence 44555553 234678999999999999999 899999999999 88899887753 33344443 4889999999
Q ss_pred ChhHHhcCCccc
Q psy4761 119 YIEEARHAHKVP 130 (131)
Q Consensus 119 ~~~~~~~~dri~ 130 (131)
+.+...-||++.
T Consensus 152 ~~el~~~~~~~~ 163 (222)
T cd03285 152 FHELTALADEVP 163 (222)
T ss_pred hHHHHHHhhcCC
Confidence 754444488764
No 417
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.36 E-value=2.4e-12 Score=96.64 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=60.9
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhhCCcEEEEEEcChhHHhcCCcc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQ-HLRTLSATGVTCIITTHYIEEARHAHKV 129 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~-~l~~~~~~g~tvi~vtH~~~~~~~~dri 129 (131)
.....+.+|.+++| +..+.+++.+|+++|+||||+|+|+.....+.. +++.+.+.|.++|++||+.+.+..|+++
T Consensus 85 i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~ 160 (202)
T cd03243 85 ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQV 160 (202)
T ss_pred ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcC
Confidence 44556788888776 666678889999999999999999998887755 5666666789999999999988887753
No 418
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=1.7e-12 Score=101.81 Aligned_cols=65 Identities=22% Similarity=0.227 Sum_probs=54.7
Q ss_pred CcCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 57 LCGQVSGGQQRRISVAVTMM---------HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~---------~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
....+|+||||++++|++|+ .+|+++++||||++||+..++.+.+.++++. .+++++|+.+.+..
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~~~~~ 253 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLADFDA 253 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCchhccc
Confidence 35568999999999999985 7999999999999999999999999997652 46677777666655
No 419
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.25 E-value=2.8e-11 Score=108.52 Aligned_cols=75 Identities=28% Similarity=0.274 Sum_probs=67.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCC
Q psy4761 56 SLCGQVSGGQQRRISVAVTMM------HS--PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAH 127 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~------~~--p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~d 127 (131)
+++.+|||||+-.++||.+|+ .+ -++++|||||..||+.....+.++|.++...|.+|++|||+-++.+.+|
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~ 890 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERAD 890 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCC
Confidence 678999999999888887764 45 6999999999999999999999999999877999999999999998888
Q ss_pred ccc
Q psy4761 128 KVP 130 (131)
Q Consensus 128 ri~ 130 (131)
.++
T Consensus 891 ~~i 893 (908)
T COG0419 891 VRI 893 (908)
T ss_pred eEE
Confidence 764
No 420
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.23 E-value=2.1e-11 Score=99.82 Aligned_cols=63 Identities=24% Similarity=0.376 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 59 GQVSGGQQRRISVAVTMMH---------SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 59 ~~LS~G~~qrl~iaral~~---------~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
..+|.||||++.+|.+|+. +|++++||||+++||+..++.+.+.|.+. |.+|+++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhhcc
Confidence 4789999999999999999 99999999999999999999999998753 679999999987654
No 421
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.22 E-value=2.8e-11 Score=91.86 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=62.9
Q ss_pred HHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhhCCcEEEEEEcChhH
Q psy4761 45 ISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTI-WQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 45 ~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i-~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+...++.. ..++..+.+|+|++|. ..+.+++.+|+++|+|||++|+|+.....+ ..+++.+.+.|.++|++||+.+.
T Consensus 75 I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l 153 (204)
T cd03282 75 LLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDI 153 (204)
T ss_pred eeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 34444543 2566788999999976 455668899999999999999999776665 45667777779999999999998
Q ss_pred Hhc
Q psy4761 123 ARH 125 (131)
Q Consensus 123 ~~~ 125 (131)
+..
T Consensus 154 ~~~ 156 (204)
T cd03282 154 AAI 156 (204)
T ss_pred HHH
Confidence 875
No 422
>KOG0066|consensus
Probab=99.21 E-value=5.6e-12 Score=105.79 Aligned_cols=83 Identities=27% Similarity=0.246 Sum_probs=71.7
Q ss_pred HHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 45 ISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 45 ~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
++.-+|++ ..+++...+|||-|-||++||||...|-+|+|||||+.||..+...+-+.|..++ +|.++||||-.+
T Consensus 395 ILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgF 471 (807)
T KOG0066|consen 395 ILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGF 471 (807)
T ss_pred HHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccch
Confidence 55666764 2588999999999999999999999999999999999999999888888887764 599999999999
Q ss_pred Hhc-CCccc
Q psy4761 123 ARH-AHKVP 130 (131)
Q Consensus 123 ~~~-~dri~ 130 (131)
+.. |..|+
T Consensus 472 LD~VCtdII 480 (807)
T KOG0066|consen 472 LDSVCTDII 480 (807)
T ss_pred HHHHHHHHh
Confidence 887 75543
No 423
>PRK00064 recF recombination protein F; Reviewed
Probab=99.20 E-value=3.9e-11 Score=97.92 Aligned_cols=67 Identities=25% Similarity=0.349 Sum_probs=58.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 56 SLCGQVSGGQQRRISVAVTMM---------HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~---------~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
.....+|.||+|++.+|++++ .+|+++++|||+++||+..++.+.+.+.++ +..++++||+.+.+..
T Consensus 269 ~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~~~~ 344 (361)
T PRK00064 269 PAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLEDLAD 344 (361)
T ss_pred CHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhhhhh
Confidence 455689999999999999996 699999999999999999999999888754 4578999999876654
No 424
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.17 E-value=1.9e-10 Score=84.22 Aligned_cols=69 Identities=26% Similarity=0.377 Sum_probs=56.5
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSP---LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p---~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
..+...+|.|++|.+.++.++...+ .++++|||-++|.|..++.+.+.|.+..+.+.-||++||.+..+
T Consensus 231 ~~~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 231 EIPLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp EGGGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred EEeeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 3456788999999999998888766 89999999999999999999999988766578999999998764
No 425
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.16 E-value=2e-10 Score=86.68 Aligned_cols=71 Identities=32% Similarity=0.377 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 59 GQVSGGQQRRISVAVTMM----HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 59 ~~LS~G~~qrl~iaral~----~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
..||||||..++||.-|+ .+++++|||||.++||...+..+.+.|+++.+ +.-+|++||+......||+.+
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~~~~~~a~~~~ 209 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNPEMFEDADKLI 209 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-HHHHTT-SEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence 399999999999997764 46799999999999999999999999998754 477999999999999888753
No 426
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.13 E-value=1.2e-10 Score=103.40 Aligned_cols=74 Identities=24% Similarity=0.249 Sum_probs=63.4
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhhCCcEEEEEEcChhHHhc-CCc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQ-HLRTLSATGVTCIITTHYIEEARH-AHK 128 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~-~l~~~~~~g~tvi~vtH~~~~~~~-~dr 128 (131)
..+..+++|+||+|++.|++++ .+|+++|+|||++|+|+.....+.. ++..+.+.|.++|++||+.+.... +++
T Consensus 384 i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~ 459 (782)
T PRK00409 384 IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNR 459 (782)
T ss_pred hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcC
Confidence 3456788999999999999998 8999999999999999999988865 566676778999999999988765 443
No 427
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.12 E-value=1.2e-10 Score=108.14 Aligned_cols=64 Identities=28% Similarity=0.423 Sum_probs=56.0
Q ss_pred CCCCcCCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 54 PNSLCGQVSGGQQRRIS----VAVT--------MMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~----iara--------l~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.++..+.|||||||+++ +|++ +..+|++++|||||+|+|+.....+++++.++ |.++||+||.+
T Consensus 1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 34557899999999996 5655 45899999999999999999999999999887 78899999986
No 428
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.12 E-value=2.1e-10 Score=95.05 Aligned_cols=74 Identities=26% Similarity=0.341 Sum_probs=67.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-hhCCcEEEEEEcChhHHhcCCccc
Q psy4761 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~-~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
..-.||.|||+|+++.-|++-+-+|+++||-.+..||..++.+++.+.-. ++.|+||+.+|||-.-...|||+.
T Consensus 445 s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll 519 (546)
T COG4615 445 SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLL 519 (546)
T ss_pred cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHH
Confidence 35589999999999999999999999999999999999999999888654 578999999999998888888863
No 429
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.10 E-value=5.2e-10 Score=84.42 Aligned_cols=63 Identities=27% Similarity=0.316 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHhhhCCcEEEEEEcChhHHhcC
Q psy4761 64 GQQRRISVAVTMMH--SPLLLILDEPTAGLDPLISDTIW-QHLRTLSATGVTCIITTHYIEEARHA 126 (131)
Q Consensus 64 G~~qrl~iaral~~--~p~llilDEPt~gLD~~~~~~i~-~~l~~~~~~g~tvi~vtH~~~~~~~~ 126 (131)
.+.+++.-+...+. +|+++|+|||++|+|+.....+. .+++++.+.|.|+|++||+++++...
T Consensus 89 ~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 89 AELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 34455555555555 99999999999999999988765 46787777789999999999988653
No 430
>KOG0060|consensus
Probab=99.07 E-value=3.5e-10 Score=96.78 Aligned_cols=67 Identities=25% Similarity=0.375 Sum_probs=59.8
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
.--..||+|||||+++||.+.++|++-||||-|+++|......+++.+++ .|.|.|-|+|.....+.
T Consensus 566 dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 566 DWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKSLWKF 632 (659)
T ss_pred cHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHHHHhh
Confidence 34568999999999999999999999999999999999999889888765 58999999998877654
No 431
>KOG2355|consensus
Probab=99.04 E-value=2.4e-10 Score=88.05 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=67.5
Q ss_pred HHHHhcCCCCCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChhH
Q psy4761 44 YISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~~ 122 (131)
.+++.++++ ..-+...+|-|||+||.|+..|++.-++|+|||-|..||..++..+.+++++-++ +|.||++.||-.+=
T Consensus 132 ~LI~iLDId-l~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG 210 (291)
T KOG2355|consen 132 KLIDILDID-LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG 210 (291)
T ss_pred hhhhheecc-ceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc
Confidence 455555553 2345668999999999999999999999999999999999999999999998775 59999999997754
Q ss_pred Hh
Q psy4761 123 AR 124 (131)
Q Consensus 123 ~~ 124 (131)
++
T Consensus 211 Le 212 (291)
T KOG2355|consen 211 LE 212 (291)
T ss_pred hh
Confidence 43
No 432
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.03 E-value=1.1e-09 Score=83.45 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=56.0
Q ss_pred CcCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhhC---CcEEEEEEcChhHHhc
Q psy4761 57 LCGQVS--GGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTI-WQHLRTLSAT---GVTCIITTHYIEEARH 125 (131)
Q Consensus 57 ~~~~LS--~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i-~~~l~~~~~~---g~tvi~vtH~~~~~~~ 125 (131)
....+| .-+.||++++++++.+|+++|+|||++|+|+.....+ ..+++++.+. +.++|++||+.+.+..
T Consensus 85 i~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 85 VSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred hhhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 334555 5678999999999999999999999999999765554 5678887654 3589999999998875
No 433
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.01 E-value=7.4e-10 Score=92.40 Aligned_cols=88 Identities=27% Similarity=0.341 Sum_probs=78.0
Q ss_pred HHHHHhcCCCC---CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEc
Q psy4761 43 WYISLLNGLPD---PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTH 118 (131)
Q Consensus 43 ~~~~~~~~l~~---~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH 118 (131)
.+++...|+.+ ..++.++||.||+.|+.||+++...|.+++.||-.+.||+.++..+...|.+++ +.|.|++++||
T Consensus 487 veILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvTh 566 (593)
T COG2401 487 VEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTH 566 (593)
T ss_pred HHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 36788888854 467789999999999999999999999999999999999999999999999997 55999999999
Q ss_pred ChhHHhc--CCccc
Q psy4761 119 YIEEARH--AHKVP 130 (131)
Q Consensus 119 ~~~~~~~--~dri~ 130 (131)
+.+.... =|+++
T Consensus 567 rpEv~~AL~PD~li 580 (593)
T COG2401 567 RPEVGNALRPDTLI 580 (593)
T ss_pred CHHHHhccCCceeE
Confidence 9998876 46654
No 434
>KOG0063|consensus
Probab=98.99 E-value=5.2e-10 Score=93.49 Aligned_cols=85 Identities=19% Similarity=0.228 Sum_probs=74.3
Q ss_pred HHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 45 ISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 45 ~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
+.+.+.|.. .++-+.+||||+-||.+||.+.+.+.++.++|||.+.||...+-+....|+.+...+.-||+|.||+...
T Consensus 197 ~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVL 276 (592)
T KOG0063|consen 197 VCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVL 276 (592)
T ss_pred HHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHH
Confidence 445555543 5677899999999999999999999999999999999999999999999999987788999999999988
Q ss_pred hc-CCcc
Q psy4761 124 RH-AHKV 129 (131)
Q Consensus 124 ~~-~dri 129 (131)
.. .|-|
T Consensus 277 DylSDFi 283 (592)
T KOG0063|consen 277 DYLSDFI 283 (592)
T ss_pred Hhhhcce
Confidence 76 5544
No 435
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.98 E-value=9.7e-10 Score=80.33 Aligned_cols=69 Identities=13% Similarity=0.045 Sum_probs=57.6
Q ss_pred CCCCcCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 54 PNSLCGQVSGGQQR------RISVAVTMMHSPLLLILDEPTAGLD---PLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 54 ~~~~~~~LS~G~~q------rl~iaral~~~p~llilDEPt~gLD---~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+..+..+|+|++| ......+...+|+++++|||++.+| ......+.+.+..+++.|.|+|+++|+...
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 45677889999998 4445555667999999999999999 777788888888888789999999998765
No 436
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.96 E-value=1.5e-09 Score=96.25 Aligned_cols=69 Identities=25% Similarity=0.275 Sum_probs=60.1
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTI-WQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i-~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
....+++|+||+++..|++++ .+|+++|+|||++|+|+.....+ ..++..+.+.|.++|++||+.+...
T Consensus 380 ~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 380 EQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred hhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 456778999999999998876 78999999999999999999998 4677777777999999999987654
No 437
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.89 E-value=2.7e-09 Score=81.51 Aligned_cols=69 Identities=26% Similarity=0.405 Sum_probs=47.6
Q ss_pred CCCCHHHHHH----HHHHHHHh--hCCCEEEEeCC---CCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChhHHhcCCc
Q psy4761 59 GQVSGGQQRR----ISVAVTMM--HSPLLLILDEP---TAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIEEARHAHK 128 (131)
Q Consensus 59 ~~LS~G~~qr----l~iaral~--~~p~llilDEP---t~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~~~~~~dr 128 (131)
.++|.|+.+. ..+++++. .+|+++||||| |+++|.... ...+++.+.+. +.++|++||+.+....+|+
T Consensus 84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~ 161 (216)
T cd03284 84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYHELTELEGK 161 (216)
T ss_pred hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcHHHHHHhhc
Confidence 3566665553 35666664 69999999999 777776442 33445555555 8899999999876555665
Q ss_pred c
Q psy4761 129 V 129 (131)
Q Consensus 129 i 129 (131)
+
T Consensus 162 ~ 162 (216)
T cd03284 162 L 162 (216)
T ss_pred C
Confidence 3
No 438
>KOG0063|consensus
Probab=98.85 E-value=1.6e-09 Score=90.60 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=69.5
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChhHHhc-CCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIEEARH-AHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~~~~~-~dri~ 130 (131)
.++.+.+||||++||+++|.++=..+++++.|||.+-||.+.+...-..++++. ..++|-.+|.||.-.+-. +||++
T Consensus 450 ~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvi 528 (592)
T KOG0063|consen 450 IDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 528 (592)
T ss_pred HhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeE
Confidence 577899999999999999999999999999999999999999988888888875 567899999999877766 99876
No 439
>KOG0065|consensus
Probab=98.78 E-value=4.5e-09 Score=96.51 Aligned_cols=89 Identities=29% Similarity=0.398 Sum_probs=73.6
Q ss_pred HHHHHHhcCCCC-C-----CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEE
Q psy4761 42 PWYISLLNGLPD-P-----NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCI 114 (131)
Q Consensus 42 ~~~~~~~~~l~~-~-----~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi 114 (131)
.+++++.+|++. . |...+..|||||+||+++-+++.+++++.+||+|+|||..+.-++.+.++++.+ .+.|++
T Consensus 236 ~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~ 315 (1391)
T KOG0065|consen 236 TDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATAL 315 (1391)
T ss_pred HHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEE
Confidence 457889999952 3 556678999999999999999999999999999999999999999999999975 478888
Q ss_pred EEEcChh-HHh-cCCccc
Q psy4761 115 ITTHYIE-EAR-HAHKVP 130 (131)
Q Consensus 115 ~vtH~~~-~~~-~~dri~ 130 (131)
++-++.. ++- -.|.|+
T Consensus 316 vsi~Q~s~~~~~lFD~v~ 333 (1391)
T KOG0065|consen 316 VSILQPSPEIYDLFDDVI 333 (1391)
T ss_pred EEeccCChHHHHhhhhee
Confidence 8877653 232 256554
No 440
>KOG0064|consensus
Probab=98.76 E-value=7e-09 Score=88.57 Aligned_cols=64 Identities=25% Similarity=0.396 Sum_probs=57.8
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
-.-||||+|||+++||.+.++|+..+|||-|+++.+.....+++..+. .|.+.+-+||......
T Consensus 610 kd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpslwk 673 (728)
T KOG0064|consen 610 KDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSLWK 673 (728)
T ss_pred HhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccHHH
Confidence 347999999999999999999999999999999999999999888765 4899999999987654
No 441
>PRK14079 recF recombination protein F; Provisional
Probab=98.73 E-value=1.9e-08 Score=81.92 Aligned_cols=48 Identities=25% Similarity=0.377 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy4761 59 GQVSGGQQRRISVAVTMM---------HSPLLLILDEPTAGLDPLISDTIWQHLRTL 106 (131)
Q Consensus 59 ~~LS~G~~qrl~iaral~---------~~p~llilDEPt~gLD~~~~~~i~~~l~~~ 106 (131)
.-+|+|||+++.+|..|+ .+|++++||||+++||...+..+.+.+.+.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~ 318 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL 318 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC
Confidence 368999999999999999 899999999999999999999998888653
No 442
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.72 E-value=3.4e-08 Score=65.91 Aligned_cols=51 Identities=31% Similarity=0.449 Sum_probs=39.0
Q ss_pred CCCcCCCCHHHHH-HHHHHHHH------hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4761 55 NSLCGQVSGGQQR-RISVAVTM------MH------SPLLLILDEPTAGLDPLISDTIWQHLRT 105 (131)
Q Consensus 55 ~~~~~~LS~G~~q-rl~iaral------~~------~p~llilDEPt~gLD~~~~~~i~~~l~~ 105 (131)
.+..+.+||||+| .+.++.++ .. .|++++|||||++||+...+.+++++++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4678899999994 44443333 22 3799999999999999999999998864
No 443
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.67 E-value=3.1e-08 Score=74.49 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHhh
Q psy4761 65 QQRRISVAVTMMHSPLLLILDEPT-----AGLDPLISDTIWQHLRTLS 107 (131)
Q Consensus 65 ~~qrl~iaral~~~p~llilDEPt-----~gLD~~~~~~i~~~l~~~~ 107 (131)
+++++.||++++.+|+++++|||| +|||+..++.+.+.+++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 899999999999999999999999 9999999999999999985
No 444
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.60 E-value=2.1e-07 Score=71.40 Aligned_cols=67 Identities=19% Similarity=0.106 Sum_probs=50.8
Q ss_pred CCCCHHH--HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhhhC-CcEEEEEEcChhHHhc
Q psy4761 59 GQVSGGQ--QRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH-LRTLSAT-GVTCIITTHYIEEARH 125 (131)
Q Consensus 59 ~~LS~G~--~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~-l~~~~~~-g~tvi~vtH~~~~~~~ 125 (131)
..+|.=+ -+++.-....+.+|+++|+|||++|.++.....+... ++.+.+. |.++|++||+++.+..
T Consensus 88 ~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 88 KGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred cCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 3455433 3344333334579999999999999999999888887 6666655 8999999999998765
No 445
>PRK13695 putative NTPase; Provisional
Probab=98.53 E-value=2.1e-07 Score=68.11 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=54.1
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEP--TAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKV 129 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEP--t~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri 129 (131)
.+....+|++++-+..+++..+.+|+++++||| +.++|+ .+.+.+.++.+.|.++|+++|+-.....+|+|
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i 145 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVLDSEKPVIATLHRRSVHPFVQEI 145 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHHhCCCeEEEEECchhhHHHHHHH
Confidence 345668999999999999999999999999995 444443 34566666556689999999985444446665
No 446
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.45 E-value=1e-06 Score=67.79 Aligned_cols=68 Identities=22% Similarity=0.135 Sum_probs=48.6
Q ss_pred cCCCCHHHH--HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhhC-CcEEEEEEcChhHHhc
Q psy4761 58 CGQVSGGQQ--RRISVAVTMMHSPLLLILDEPTAGLDPLISDTI-WQHLRTLSAT-GVTCIITTHYIEEARH 125 (131)
Q Consensus 58 ~~~LS~G~~--qrl~iaral~~~p~llilDEPt~gLD~~~~~~i-~~~l~~~~~~-g~tvi~vtH~~~~~~~ 125 (131)
...+|.=+. +++.-+..-+.+++++|+|||.+|.|+.....+ ..+++.+.+. +.++|++||+.+....
T Consensus 88 ~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 88 QHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred ccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 344554333 333333334578999999999999998777764 5667777765 8899999999987653
No 447
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.39 E-value=8.2e-07 Score=79.46 Aligned_cols=49 Identities=31% Similarity=0.492 Sum_probs=45.7
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 76 MHSPLLLILDEPTAGL-DPLISDTIWQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 76 ~~~p~llilDEPt~gL-D~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
..+|+++++|||+.+| |+...+.+.+.++.+++.|.+++++||+++.+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~ 699 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAE 699 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence 5799999999999999 699999999999999888999999999999875
No 448
>PF13175 AAA_15: AAA ATPase domain
Probab=98.33 E-value=1.8e-06 Score=69.78 Aligned_cols=68 Identities=26% Similarity=0.335 Sum_probs=57.0
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhh----C---CC---EEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChhH
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMH----S---PL---LLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIEE 122 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~----~---p~---llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~~ 122 (131)
.-+..++|.|.|+.+.|+..+.. . +. ++++|||-+.|.|..++.+.+.|.++.. .+..||++||.+..
T Consensus 336 ~~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 336 SIPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred cCChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 34678999999988887776531 2 22 9999999999999999999999999875 58899999998764
No 449
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.29 E-value=2.2e-06 Score=77.03 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=50.4
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 71 VAVTMMHSPLLLILDEPTAGL-DPLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 71 iaral~~~p~llilDEPt~gL-D~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
|.+++..+|+++++|||+.+| |+..++.+.+.++.+++.|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 577888999999999999999 7999999999999998889999999999998865
No 450
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.27 E-value=1.7e-06 Score=79.83 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=65.6
Q ss_pred CCCcCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMM----HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKV 129 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~----~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri 129 (131)
.+....||||||-..+||..|+ ...++++|||-=++||..+...+.++|++.. .+.-.|+|||.......||++
T Consensus 1061 ~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~~~m~~ad~l 1138 (1163)
T COG1196 1061 LQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRKGTMEAADRL 1138 (1163)
T ss_pred ccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcChHHHHHHHHH
Confidence 3456789999999999998886 4569999999999999999999999999986 567899999999998888875
No 451
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.18 E-value=4.6e-06 Score=72.85 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=48.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhhCCcEEEEEEcChhHHh
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMH------SPLLLILDEPTAGLDPLISDTIWQ-HLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~------~p~llilDEPt~gLD~~~~~~i~~-~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
.++..||+||+|-+++|-.++. +.++ |+|||++.||...+..+.+ .+.++ +.-||+.|||-+.-.
T Consensus 547 ~~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~---~~QvIils~d~e~~~ 618 (650)
T TIGR03185 547 IDKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA---SHQVLLLSTDEEVDE 618 (650)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc---CCeEEEEechHhhCH
Confidence 4678999999999866655432 4566 5699999999999999875 55543 467888889876543
No 452
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.12 E-value=9e-06 Score=62.08 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 60 QVSGGQQRRISVAVTMMH--SPLLLILDEPTAG---LDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~--~p~llilDEPt~g---LD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
..|.++.+.+..+..++. +|+++++||||+. .|......+.+.++.+++.|.|+++++|+...
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAF 167 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcC
Confidence 457889999999999997 9999999999954 55555555656666667778999999997653
No 453
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.11 E-value=9.1e-07 Score=69.23 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=55.6
Q ss_pred cCCCCHHH--------HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHhhhCCcEEEEEEcChhHHhcCCc
Q psy4761 58 CGQVSGGQ--------QRRISVAVTMMHSPLLLILDEPTAGLDPLISDT-IWQHLRTLSATGVTCIITTHYIEEARHAHK 128 (131)
Q Consensus 58 ~~~LS~G~--------~qrl~iaral~~~p~llilDEPt~gLD~~~~~~-i~~~l~~~~~~g~tvi~vtH~~~~~~~~dr 128 (131)
...+|||+ +|++++||++..+++|++| ||+.+|..+... +. +.+++..+.|.|+.||++....+.|.
T Consensus 127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~pa 202 (249)
T cd01128 127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPA 202 (249)
T ss_pred CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCe
Confidence 34579999 9999999999999999999 999999533332 43 55555567899999999999888776
Q ss_pred cc
Q psy4761 129 VP 130 (131)
Q Consensus 129 i~ 130 (131)
|.
T Consensus 203 I~ 204 (249)
T cd01128 203 ID 204 (249)
T ss_pred EE
Confidence 64
No 454
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.09 E-value=1.2e-05 Score=61.90 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 60 QVSGGQQRRISVAVTMM----HSPLLLILDEPTAGL----DPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~----~~p~llilDEPt~gL----D~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+|+++.++-.+.+.+- .+|+++++||||+++ |+...+.+.+.++++++.|.|+++ ||+...
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~ 164 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKE 164 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-Eecccc
Confidence 35666555544444443 369999999999999 888888899999988777886655 555543
No 455
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.02 E-value=2.4e-05 Score=63.57 Aligned_cols=66 Identities=26% Similarity=0.433 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 59 GQVSGGQQRRISVAVTMMH--SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 59 ~~LS~G~~qrl~iaral~~--~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
..||-|+.+-++++-+|.. .|.++++|||-++|-|..-..+...++..++.+ -||++||..+.+..
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~rLl~~ 336 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPRLLNA 336 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHHHHhh
Confidence 3899999999999999985 689999999999999999999999999987655 79999999988754
No 456
>KOG0964|consensus
Probab=98.00 E-value=4.3e-06 Score=75.20 Aligned_cols=72 Identities=26% Similarity=0.301 Sum_probs=63.0
Q ss_pred CcCCCCHHHHHHHHHHHHHhh---C-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcc
Q psy4761 57 LCGQVSGGQQRRISVAVTMMH---S-PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKV 129 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~~---~-p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri 129 (131)
...+||||||--+|||..++. + ++++++||.-++||+..+..+..+|+++... .-.|.+|-.++.+.-||++
T Consensus 1094 ~m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~-aQFI~TTFRpEll~vAdKf 1169 (1200)
T KOG0964|consen 1094 EMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS-AQFITTTFRPELLSVADKF 1169 (1200)
T ss_pred HHHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc-cceEeecccHHHHHHHHhh
Confidence 355999999999999999873 4 4999999999999999999999999999765 6688888888888888875
No 457
>PF13166 AAA_13: AAA domain
Probab=97.98 E-value=5e-05 Score=66.40 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=59.7
Q ss_pred CCcCCCCHHHHHHHHHHHHHh--h-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh--hCCcEEEEEEcChhHHh
Q psy4761 56 SLCGQVSGGQQRRISVAVTMM--H-------SPLLLILDEPTAGLDPLISDTIWQHLRTLS--ATGVTCIITTHYIEEAR 124 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~--~-------~p~llilDEPt~gLD~~~~~~i~~~l~~~~--~~g~tvi~vtH~~~~~~ 124 (131)
.+...||-|||.-+++|-=|. . +..++++|-|.|+||...+..+...|.+.. ....-||+-|||+.+..
T Consensus 496 ~~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~ 575 (712)
T PF13166_consen 496 KPAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFK 575 (712)
T ss_pred cccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHH
Confidence 456799999999999986543 3 678999999999999999999999999985 45678999999998765
Q ss_pred c
Q psy4761 125 H 125 (131)
Q Consensus 125 ~ 125 (131)
.
T Consensus 576 ~ 576 (712)
T PF13166_consen 576 E 576 (712)
T ss_pred H
Confidence 4
No 458
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.96 E-value=1.8e-05 Score=60.39 Aligned_cols=68 Identities=26% Similarity=0.267 Sum_probs=56.6
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
.+.....|.||-=.--+.+.+ ++--++|||||-++|.|.-+-.+...|+.+.+.|.-+||+||.+=..
T Consensus 124 ~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLl 191 (233)
T COG3910 124 GRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILL 191 (233)
T ss_pred CcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhe
Confidence 445668899997665555554 56679999999999999999999999999999999999999987443
No 459
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.88 E-value=7.8e-05 Score=52.09 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTA----------GLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~~p~llilDEPt~----------gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
..+.+..++...+++...+|+++++||+++ +.+....+.+.++....++.|.|+++++|....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 445666677888899999999999999994 455555566666666665669999999997753
No 460
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.85 E-value=4.3e-05 Score=68.40 Aligned_cols=52 Identities=31% Similarity=0.438 Sum_probs=45.8
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 74 TMMHSPLLLILDEPTAGLD-PLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 74 al~~~p~llilDEPt~gLD-~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
.+-.+|+++++|||+.+|| +..++.+.+.++.+++.|.+++++||+++.+..
T Consensus 631 ~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 683 (811)
T PRK13873 631 RFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDG 683 (811)
T ss_pred HhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhc
Confidence 3456899999999999999 778889999999998889999999999987754
No 461
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.83 E-value=6.8e-05 Score=59.36 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 61 LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
|.+=.|..-....+..++|+++++|||++ .+.+..++..+ +.|.|+|++||+.+.
T Consensus 177 ~~~~~k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 177 LDGCPKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-HAGVSIIATAHGRDV 231 (270)
T ss_pred cccchHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-hCCCEEEEEechhHH
Confidence 33333333334444447999999999974 23344455444 469999999998665
No 462
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.77 E-value=1.8e-05 Score=60.77 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=39.2
Q ss_pred HHhhCCCEEEEeCCCC------CCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 74 TMMHSPLLLILDEPTA------GLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 74 al~~~p~llilDEPt~------gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
+...+|+++|+| |++ ..|+.....+++.+.++++ .|.||++++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 335799999999 765 4799999999999998875 4999999999864
No 463
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.67 E-value=0.00022 Score=64.41 Aligned_cols=72 Identities=24% Similarity=0.266 Sum_probs=54.2
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhh--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChhHHhcCCc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMH--SPLLLILDEP---TAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIEEARHAHK 128 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~--~p~llilDEP---t~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~~~~~~dr 128 (131)
+.....+|.-+.....++.++-. ++.++|+||| |+.+|. ....+.+++.+.+. |.+++++||+.+...-+++
T Consensus 661 d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg--~aia~aile~l~~~~~~~~l~aTH~~el~~l~~~ 738 (854)
T PRK05399 661 DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDG--LSIAWAVAEYLHDKIGAKTLFATHYHELTELEEK 738 (854)
T ss_pred cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchh--HHHHHHHHHHHHhcCCceEEEEechHHHHHHhhh
Confidence 44556788888999999988876 8999999999 777773 33455566666655 6899999999766554543
No 464
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.66 E-value=0.00014 Score=65.03 Aligned_cols=52 Identities=27% Similarity=0.439 Sum_probs=46.7
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 74 TMMHSPLLLILDEPTAGLD-PLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 74 al~~~p~llilDEPt~gLD-~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
.+..+|.++++|||...|| +...+.+.+.++.+++.|.+++++||+++.+..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence 4567899999999999999 888889999999998889999999999988764
No 465
>KOG0962|consensus
Probab=97.40 E-value=0.00033 Score=65.08 Aligned_cols=66 Identities=27% Similarity=0.312 Sum_probs=55.2
Q ss_pred CCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh---h--CCcEEEEEEcChhHHhc
Q psy4761 60 QVSGGQQR------RISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS---A--TGVTCIITTHYIEEARH 125 (131)
Q Consensus 60 ~LS~G~~q------rl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~---~--~g~tvi~vtH~~~~~~~ 125 (131)
.-|.||+= |+++|-.+..++.+|-|||||++||......+...+.++. . .+--.|++|||-+++..
T Consensus 1183 RcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~ 1259 (1294)
T KOG0962|consen 1183 RCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQL 1259 (1294)
T ss_pred CccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHH
Confidence 57889885 7788889999999999999999999999998888777653 1 25578999999988764
No 466
>KOG0933|consensus
Probab=97.33 E-value=0.00015 Score=65.79 Aligned_cols=75 Identities=23% Similarity=0.242 Sum_probs=60.5
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMM----HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKV 129 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~----~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri 129 (131)
.+....+||||||-.|+++..|+ ..++++||||.-++||....+.|-.+|+.-- .+.-.|+||=---...+||++
T Consensus 1076 WKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF-~~sQFIVVSLKeGMF~NANvL 1154 (1174)
T KOG0933|consen 1076 WKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-THSQFIVVSLKEGMFNNANVL 1154 (1174)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhC-CCCeEEEEEchhhccccchhh
Confidence 35667899999999999887765 3669999999999999999999999997632 366788998766666666654
No 467
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0014 Score=56.61 Aligned_cols=69 Identities=28% Similarity=0.388 Sum_probs=58.9
Q ss_pred cCCCCHHHHHHHHHHHHHh--hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCC
Q psy4761 58 CGQVSGGQQRRISVAVTMM--HS--PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAH 127 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~--~~--p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~d 127 (131)
.+--||||--|+.+|.-.+ .. .+.||+||--+|+.-.....+-+.|+++.+ ..-|+.|||-+..+..+|
T Consensus 429 ~KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~-~~QVl~VTHlPQVAa~ad 501 (557)
T COG0497 429 AKVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSE-HHQVLCVTHLPQVAAMAD 501 (557)
T ss_pred HhhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhc-CceEEEEecHHHHHhhhc
Confidence 3468999999999987554 22 559999999999999999999999999864 578999999998888776
No 468
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.26 E-value=2.3e-05 Score=66.41 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=45.1
Q ss_pred CCCCcCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 54 PNSLCGQVSGGQQRRISVA--VTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~ia--ral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.++....+|+|++||+.|+ .++...|+.. ...++.++++++.+++.|+|+|++||+.+.
T Consensus 109 l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~ 169 (484)
T TIGR02655 109 IERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEE 169 (484)
T ss_pred HHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCccc
Confidence 3455668888888888888 5555555443 456778888998888889999999999864
No 469
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.18 E-value=0.00081 Score=50.42 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=40.8
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 70 SVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 70 ~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
++.++|..+|+++++|||. |++... ..+ +....|..++.++|..+.....||++
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~---~~l-~~a~~G~~v~~t~Ha~~~~~~~~Rl~ 119 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIR---LAL-TAAETGHLVMSTLHTNSAAKTIDRII 119 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHH---HHH-HHHHcCCEEEEEecCCcHHHHHhHHH
Confidence 5788999999999999996 554432 223 34457899999999998776677763
No 470
>KOG0996|consensus
Probab=97.12 E-value=0.0004 Score=63.84 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=60.7
Q ss_pred CCcCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcc
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMH----SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKV 129 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~----~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri 129 (131)
+.+.+||||+|-.-++|..++. ..++++|||.-++||..+.-.+.+.|++-. ++.-.|+||=.-+..+-++|+
T Consensus 1191 K~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErT-kNAQFIIISLRnnMFELa~rL 1267 (1293)
T KOG0996|consen 1191 KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERT-KNAQFIIISLRNNMFELANRL 1267 (1293)
T ss_pred hhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhc-cCCeEEEEEehhhHHHHHhhh
Confidence 4688999999999999988873 459999999999999999999999999754 467788888766666656654
No 471
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.001 Score=53.89 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=36.3
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 82 LILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 82 lilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
+++|||+.+||+..+..+.+.+++.. .+.++|++||+.+.+.
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~~ll 157 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAADKVL 157 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChHhCh
Confidence 55789999999999999999999875 5688999999987543
No 472
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.00 E-value=0.00016 Score=53.46 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH--Hhc-CCcccC
Q psy4761 63 GGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE--ARH-AHKVPI 131 (131)
Q Consensus 63 ~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~--~~~-~dri~~ 131 (131)
.|+-+|..||.++..+|+.+..+| +.+||...+.+.+.+.+..+.|.+|++.+|.+.+ +.. ||++++
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~ 129 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIV 129 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEE
Confidence 488999999999999999988777 7899999999999998876567899999999965 333 887753
No 473
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.81 E-value=0.016 Score=44.88 Aligned_cols=71 Identities=23% Similarity=0.215 Sum_probs=48.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hhhh-CCcEEEEEEcChhHHhc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTM--MHSPLLLILDEPTAGLDPLISDTIWQHLR-TLSA-TGVTCIITTHYIEEARH 125 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral--~~~p~llilDEPt~gLD~~~~~~i~~~l~-~~~~-~g~tvi~vtH~~~~~~~ 125 (131)
+.....+|.=+.-...++.++ +.+-.++|+||+..|-++.....+...+. .+.+ .+..++++||+.+....
T Consensus 97 d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 97 DSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL 171 (235)
T ss_dssp -SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred cccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence 334556776666555555555 45778999999999999999887666554 4556 48889999999976543
No 474
>KOG0018|consensus
Probab=96.70 E-value=0.0022 Score=58.67 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=60.1
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMH----SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHK 128 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~----~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dr 128 (131)
-++..+||||+|--.++|..++. .++..+|||.-++||..+..++...|+ ..+.-.|++|=-.++...+|-
T Consensus 1046 Fr~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr---~~~~Q~IvISLK~~~y~kada 1120 (1141)
T KOG0018|consen 1046 FRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR---SSNFQFIVISLKEEFYQKADA 1120 (1141)
T ss_pred cCchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh---cCCceEEEEeccHHHhhhhhc
Confidence 35677999999999999998874 369999999999999999999999998 456778888877777776664
No 475
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.53 E-value=0.0044 Score=49.62 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=40.4
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 68 RISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 68 rl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.-.+..+|-.+|+++++|||.+ ...++.++.+...+.+++.++|..+.....+|++
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~ 263 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGSPEEAFEQLA 263 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCCHHHHHHHHH
Confidence 3467778899999999999996 3455666666533346799999988655566653
No 476
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.49 E-value=0.0043 Score=52.29 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=54.6
Q ss_pred cCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcC
Q psy4761 58 CGQVSGGQQRRISVAVTMM-------HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHA 126 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~-------~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~ 126 (131)
..+.|.|+|+|++.+.+.+ .++-++++|+||++.|+. +++...+.+.-..|.+..+.||....++++
T Consensus 219 tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 219 TSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERS 292 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHh
Confidence 4688999999999999988 799999999999999985 666666666654588888888866666654
No 477
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.35 E-value=0.014 Score=50.73 Aligned_cols=71 Identities=20% Similarity=0.275 Sum_probs=57.9
Q ss_pred CCCCcCC-CCHHHHHHHHHHHHHh---hCC-----CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 54 PNSLCGQ-VSGGQQRRISVAVTMM---HSP-----LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 54 ~~~~~~~-LS~G~~qrl~iaral~---~~p-----~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
.+...++ ||-|++.-++++--|+ -+| +++++|.|.+++|..-.-..+..+++.+.+++-|++-|||--++.
T Consensus 522 ~g~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHntYF~r 601 (758)
T COG4694 522 DGQLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNTYFYR 601 (758)
T ss_pred cCccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEeccceehH
Confidence 3445555 9999999998766554 344 688999999999999999999999998888999999999964443
No 478
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.12 E-value=0.013 Score=49.27 Aligned_cols=49 Identities=10% Similarity=0.226 Sum_probs=38.3
Q ss_pred hCCCEEEEeCCCCCCCHH-HHHHHHHHHHHhhhCCcEEEEEE-cChhHHhc
Q psy4761 77 HSPLLLILDEPTAGLDPL-ISDTIWQHLRTLSATGVTCIITT-HYIEEARH 125 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~-~~~~i~~~l~~~~~~g~tvi~vt-H~~~~~~~ 125 (131)
.+|++|++|||...++.. ..+.++..+.++.+.|+.+|++| |++..+..
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~ 243 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHH
Confidence 479999999999888765 34678899988877777777776 77766654
No 479
>PF13514 AAA_27: AAA domain
Probab=96.04 E-value=0.016 Score=53.75 Aligned_cols=70 Identities=20% Similarity=0.172 Sum_probs=55.1
Q ss_pred CCCcCCCCHHHHH------HHHHHHHH-hhCCCE-EEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 55 NSLCGQVSGGQQR------RISVAVTM-MHSPLL-LILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 55 ~~~~~~LS~G~~q------rl~iaral-~~~p~l-lilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
..++..||.|.+= |++++..+ -.+.++ +|+|+++.+.|..-...++++|.++.+. .-||+=||+...+.-
T Consensus 1020 ~~~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~-~QVI~FTch~~l~~~ 1097 (1111)
T PF13514_consen 1020 RVPVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRR-RQVIYFTCHEHLVEL 1097 (1111)
T ss_pred EeeHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccC-CeEEEEeccHHHHHH
Confidence 3467799999986 45555565 345566 9999999999999999999999998755 567888888877663
No 480
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.017 Score=47.75 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=51.0
Q ss_pred cCCCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 58 CGQVSGGQQRRISVAVTMMH---------SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~---------~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
..-.|.||++-+.++.-|+. .++||+|||-++-||+.-+..+++. . +.+.-+++++-+.+.+.
T Consensus 273 ~~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~---~~~~Q~fvT~t~~~~~~ 344 (363)
T COG1195 273 ADFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-I---ELGVQVFVTTTDLEDID 344 (363)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-c---ccCCeEEEEccCHHHhh
Confidence 34699999999998877753 7899999999999999999988877 3 34566778877777665
No 481
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.03 E-value=0.013 Score=47.69 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=40.0
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcc
Q psy4761 69 ISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKV 129 (131)
Q Consensus 69 l~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri 129 (131)
-++.++|..+|+++++||+. |+.......+ ....|.+|+.+.|-.+.....+|+
T Consensus 186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~~~~~~Rl 239 (343)
T TIGR01420 186 NALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSAAQTIERI 239 (343)
T ss_pred HHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCHHHHHHHH
Confidence 34778899999999999997 7776654333 345699999999987665545554
No 482
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=95.99 E-value=0.041 Score=49.96 Aligned_cols=70 Identities=17% Similarity=0.123 Sum_probs=51.2
Q ss_pred CCcCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhh-CCcEEEEEEcChhHHhc
Q psy4761 56 SLCGQVSGGQQRRISVAVTMM--HSPLLLILDEPTAGLDPLISDTIWQHL-RTLSA-TGVTCIITTHYIEEARH 125 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~--~~p~llilDEPt~gLD~~~~~~i~~~l-~~~~~-~g~tvi~vtH~~~~~~~ 125 (131)
....++|.=+.-...++..|- .++.++|+||+-.|-|+.....+...+ ..+.+ .|..++++||+.+...-
T Consensus 647 ~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l 720 (840)
T TIGR01070 647 DLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTAL 720 (840)
T ss_pred chhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHH
Confidence 344466766666777777664 688999999998888887777755544 44455 58889999999876654
No 483
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.95 E-value=0.12 Score=34.07 Aligned_cols=63 Identities=30% Similarity=0.255 Sum_probs=48.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------HHHHhhhCCcEEEEEEcC
Q psy4761 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQ------HLRTLSATGVTCIITTHY 119 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~------~l~~~~~~g~tvi~vtH~ 119 (131)
.....++++..+..+.+|-..+|.++++||+..-.+......... ........+..+|.++|.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 57 KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 345678888888888888888899999999999999887776554 122223457888888884
No 484
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.56 E-value=0.021 Score=43.15 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=38.3
Q ss_pred hCCCEEEEeCCCC------CCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh---------hHHhc-CCccc
Q psy4761 77 HSPLLLILDEPTA------GLDPLISDTIWQHLRTLSATGVTCIITTHYI---------EEARH-AHKVP 130 (131)
Q Consensus 77 ~~p~llilDEPt~------gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~---------~~~~~-~dri~ 130 (131)
.+++++++| +.+ +.|...+..+.++++.+++.|.|+++++|.- ..++. ||.|+
T Consensus 106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI 174 (224)
T TIGR03880 106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVI 174 (224)
T ss_pred hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEE
Confidence 478999999 433 3445556778888888888899999999952 22444 77765
No 485
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.50 E-value=0.025 Score=47.75 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHH-----HHHHHh--hCCCEEEEe-----------------CC--CCCCCHHHHHHHHHHHHHhh--hCC
Q psy4761 59 GQVSGGQQRRIS-----VAVTMM--HSPLLLILD-----------------EP--TAGLDPLISDTIWQHLRTLS--ATG 110 (131)
Q Consensus 59 ~~LS~G~~qrl~-----iaral~--~~p~llilD-----------------EP--t~gLD~~~~~~i~~~l~~~~--~~g 110 (131)
.+=|.++|-+.. +|--+. .+-=++++| || |+|+|+.....+.++++++. +.|
T Consensus 222 ~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~G 301 (438)
T PRK07721 222 SDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASG 301 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence 456677777655 333332 234467788 76 89999999999999999986 357
Q ss_pred c-----EEEEEEcChhHHhcCCccc
Q psy4761 111 V-----TCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 111 ~-----tvi~vtH~~~~~~~~dri~ 130 (131)
. ||++.+||+++ .-||++.
T Consensus 302 sIT~~~TVlv~~hdm~e-~i~d~v~ 325 (438)
T PRK07721 302 SITAFYTVLVDGDDMNE-PIADTVR 325 (438)
T ss_pred CeeeEEEEEEECCCCCc-hhhhhEE
Confidence 5 99999999985 3477653
No 486
>PRK06893 DNA replication initiation factor; Validated
Probab=95.17 E-value=0.048 Score=41.71 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=34.7
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 76 MHSPLLLILDEPTAGL-DPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 76 ~~~p~llilDEPt~gL-D~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
+.++++|++||..... +....+.++.++.+..+.|.+++++|++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4578999999998754 56666689999988877777877776654
No 487
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.84 E-value=0.067 Score=39.31 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=44.9
Q ss_pred HHHHHHHHHHh--hCCCEEEEeCCCCC--CCHHHHHHHHHHHHHhhhCCcEEEEEEcChh--HHhcCCccc
Q psy4761 66 QRRISVAVTMM--HSPLLLILDEPTAG--LDPLISDTIWQHLRTLSATGVTCIITTHYIE--EARHAHKVP 130 (131)
Q Consensus 66 ~qrl~iaral~--~~p~llilDEPt~g--LD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~--~~~~~dri~ 130 (131)
++-...|+..+ .+.+++||||-... ++....+.+.++|++ +..+..||++.++.. .++.||-|+
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-rp~~~evIlTGr~~p~~l~e~AD~VT 150 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-KPEDLELVLTGRNAPKELIEAADLVT 150 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-CCCCCEEEEECCCCCHHHHHhCceee
Confidence 34445555555 45799999998765 444556778888865 445789999999985 334588764
No 488
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=0.086 Score=42.80 Aligned_cols=47 Identities=28% Similarity=0.395 Sum_probs=41.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
.+--++|..+|-+.|-|..+-.+.++|.++++.|+-|++.||.-..+
T Consensus 259 K~~~lIIIEnPEAHLHP~gQs~lg~llA~~a~~gvqvVveTHSdhii 305 (374)
T COG4938 259 KKKYLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHSDHII 305 (374)
T ss_pred cCCcEEEEcCchhhcCchhHHHHHHHHHHHHhcCcEEEEEechHHHh
Confidence 44467889999999999999999999999999999999999965444
No 489
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=94.17 E-value=0.13 Score=43.55 Aligned_cols=73 Identities=21% Similarity=0.285 Sum_probs=53.8
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH-----HH----------HHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLI-----SD----------TIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~-----~~----------~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
-.+=||-+-|-..|..|+-...++|++||=|++-..-- +. -+.+.++.+. +.|.+.|+|+--..
T Consensus 320 T~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsg 399 (448)
T PF09818_consen 320 TENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSG 399 (448)
T ss_pred ccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccch
Confidence 44789999999999999999999999999998765422 21 2355567775 45887666665555
Q ss_pred HH-hcCCccc
Q psy4761 122 EA-RHAHKVP 130 (131)
Q Consensus 122 ~~-~~~dri~ 130 (131)
.. ..||+|+
T Consensus 400 dy~~vAD~Vi 409 (448)
T PF09818_consen 400 DYFDVADRVI 409 (448)
T ss_pred hhHhhCCEEE
Confidence 44 4488875
No 490
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=94.14 E-value=0.16 Score=45.15 Aligned_cols=49 Identities=29% Similarity=0.431 Sum_probs=41.9
Q ss_pred hhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 76 MHSPLLLILDEPTAGLD-PLISDTIWQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD-~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
-..|.++++||.-.-++ +...+.+.+.++..++.|..++++||+++.+.
T Consensus 627 ~~~~~~i~iDEa~~ll~~~~~~~~i~~~~r~~RK~~~~~~~~TQ~~~d~~ 676 (785)
T TIGR00929 627 DGRPFLIIIDEAWQYLGNPVFAAKIRDWLKTLRKANGIVVLATQSINDAL 676 (785)
T ss_pred CCCCeEEEEechhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence 35789999999877774 77788888999999888999999999998764
No 491
>PRK04296 thymidine kinase; Provisional
Probab=94.04 E-value=0.21 Score=37.06 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=29.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
.+++++++||- --++. +++.++++.++..|.+|+++.++
T Consensus 77 ~~~dvviIDEa-q~l~~---~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 77 EKIDCVLIDEA-QFLDK---EQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred CCCCEEEEEcc-ccCCH---HHHHHHHHHHHHcCCeEEEEecC
Confidence 47899999998 22443 33666777767789999999999
No 492
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.04 E-value=0.2 Score=33.45 Aligned_cols=54 Identities=20% Similarity=0.172 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-----CCcEEEEEEcChh
Q psy4761 67 RRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-----TGVTCIITTHYIE 121 (131)
Q Consensus 67 qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-----~g~tvi~vtH~~~ 121 (131)
+......+...++.++++||.-.. ++.....+.+.+..... .+.++|++|++..
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 445566677789999999998765 55666778888877643 4788999998654
No 493
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=93.88 E-value=0.091 Score=45.95 Aligned_cols=61 Identities=26% Similarity=0.462 Sum_probs=47.9
Q ss_pred HHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCC
Q psy4761 66 QRRISVAVTMM----HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAH 127 (131)
Q Consensus 66 ~qrl~iaral~----~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~d 127 (131)
.+.++....+. ..|.+||.+||-+.|-|..+..+++.++.+. .+.-+|++||..+.+..+|
T Consensus 285 ~~~l~~~~~~~~~~~~r~~ILLiEEPEahLHPq~q~~l~~ll~~l~-~~~Q~IvTThS~~~~s~~d 349 (581)
T COG3593 285 MQLLQAIGSLELERVARPNILLIEEPEAHLHPQLQAVLWDLLNNLP-LGLQRIVTTHSPHLLSLAD 349 (581)
T ss_pred HHHHHHHhHhhhhhhcccceEEEeCchhhcCHHHHHHHHHHHhcCC-cceEEEEEcCCcccccccC
Confidence 45555544443 2344999999999999999999999998876 6788999999998887543
No 494
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.85 E-value=0.19 Score=41.86 Aligned_cols=55 Identities=18% Similarity=0.354 Sum_probs=40.3
Q ss_pred HHHHHHhhCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHhh----hCCcEEEEEEcChhHHh
Q psy4761 70 SVAVTMMHSPLLLILDE----------PTAGLDPLISDTIWQHLRTLS----ATGVTCIITTHYIEEAR 124 (131)
Q Consensus 70 ~iaral~~~p~llilDE----------Pt~gLD~~~~~~i~~~l~~~~----~~g~tvi~vtH~~~~~~ 124 (131)
.+..|-...|.++++|| +.+|.|....+.+.+++..+. ..+..||++||+++.+.
T Consensus 230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LD 298 (398)
T PTZ00454 230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 298 (398)
T ss_pred HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCC
Confidence 34455567899999999 456677777777777777653 23678999999876653
No 495
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.47 E-value=0.057 Score=51.79 Aligned_cols=56 Identities=30% Similarity=0.461 Sum_probs=42.4
Q ss_pred cCCCCHHHHHHHHHHHHHh--------h--------CC-CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEE
Q psy4761 58 CGQVSGGQQRRISVAVTMM--------H--------SP-LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~--------~--------~p-~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vt 117 (131)
.+.||||||..+.+...++ . -| ++|+|||. +++|......++++++.+ |.-.||+|
T Consensus 1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~---~~q~i~~t 1435 (1486)
T PRK04863 1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERL---DMQLLIAA 1435 (1486)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHc---CCcEEEec
Confidence 5789999998887766554 1 22 55799999 999999999999988743 44445544
No 496
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=92.98 E-value=0.16 Score=36.81 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=42.8
Q ss_pred HHhcCCCC--CCCCcCCCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC
Q psy4761 46 SLLNGLPD--PNSLCGQVSGGQQRRIS--VAVTMMH-SPLLLILDEPTAGLDPLISDTIWQHLRTLSAT 109 (131)
Q Consensus 46 ~~~~~l~~--~~~~~~~LS~G~~qrl~--iaral~~-~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~ 109 (131)
+...+.+. .-.++..+|+|++|++. +.+.+-. +++++ |+|++|....+.+++.|.++.++
T Consensus 131 l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 131 LKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 34445541 34567789999999877 5555544 34443 99999999999999999887654
No 497
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=92.97 E-value=0.093 Score=44.65 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=35.4
Q ss_pred hCCCEEEEeCC---CCCCCHHH--HHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 77 HSPLLLILDEP---TAGLDPLI--SDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 77 ~~p~llilDEP---t~gLD~~~--~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+|+.+++|=- ++++|... +..+.++++.+++.|.|+|+++|...
T Consensus 129 ~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~~g~TvLlt~~~~~ 178 (509)
T PRK09302 129 IGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQKGVTAVITGERGD 178 (509)
T ss_pred hCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHhCCCEEEEEECCcc
Confidence 58999999954 45666655 56788888878788999999999764
No 498
>COG1106 Predicted ATPases [General function prediction only]
Probab=92.31 E-value=0.51 Score=39.23 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=58.5
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChhHHh
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMH-SPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIEEAR 124 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~-~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~~~~ 124 (131)
..+....|-|-++.+.+.-++.. +-+++++||+-++|-|.....+.+.+.+-.+ ....++++||+.+.+.
T Consensus 246 ~~~~~~~~~G~kk~~~i~~~l~~~~~k~l~iDEie~~lHp~lm~~~l~~~~~~~~~~niq~~~TTH~~e~id 317 (371)
T COG1106 246 KIPLNEEGEGFKKALIIVPLLSDLNDKVLLIDEIENGLHPSLMILILETLEDKVKNNNIQVFLTTHSTEFID 317 (371)
T ss_pred ceeeeeecchHHHHHHHHhhhhhcCCceEEeehhhhccCHHHHHHHHHHHHhhcccceEEEEeecccHHHHH
Confidence 34556889999999999998874 4599999999999999999998888877654 3588999999987765
No 499
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.20 E-value=0.61 Score=39.45 Aligned_cols=52 Identities=6% Similarity=0.060 Sum_probs=41.0
Q ss_pred HHHHHHhhCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 70 SVAVTMMHSPLLLILDEP-TAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 70 ~iaral~~~p~llilDEP-t~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.-.+.-+.++++|++||. +-+.+....+.++.++..+.+.|+.+|++|+...
T Consensus 198 ~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 198 EQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred HHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 334555788999999999 4455677888999999998877888888888654
No 500
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.85 E-value=0.29 Score=37.77 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=35.9
Q ss_pred HHHHHHHHHHh--hCCCEEEEeCCCCCCCH-------H-HHHHHHHHHHHhh-hCCcEEEEEEcCh
Q psy4761 66 QRRISVAVTMM--HSPLLLILDEPTAGLDP-------L-ISDTIWQHLRTLS-ATGVTCIITTHYI 120 (131)
Q Consensus 66 ~qrl~iaral~--~~p~llilDEPt~gLD~-------~-~~~~i~~~l~~~~-~~g~tvi~vtH~~ 120 (131)
...+..++.++ .+|+++++|..+.-.+. . ....+...|++++ +.|+||++++|--
T Consensus 126 ~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~ 191 (271)
T cd01122 126 DSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLR 191 (271)
T ss_pred HHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 34455555554 47999999997654322 1 2335556676765 4599999999854
Done!