Query psy4761
Match_columns 131
No_of_seqs 232 out of 1642
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 17:01:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 100.0 1E-29 3.4E-34 194.5 8.5 88 44-131 127-217 (235)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 2.9E-29 9.8E-34 203.2 10.9 88 44-131 121-211 (359)
3 3tui_C Methionine import ATP-b 100.0 1.1E-29 3.9E-34 206.1 8.4 88 44-131 146-236 (366)
4 2pcj_A ABC transporter, lipopr 100.0 2.1E-29 7.1E-34 191.3 9.3 87 44-130 123-210 (224)
5 1ji0_A ABC transporter; ATP bi 100.0 3.8E-29 1.3E-33 191.6 8.6 88 44-131 121-211 (240)
6 3rlf_A Maltose/maltodextrin im 100.0 1.8E-29 6.3E-34 205.7 7.2 88 44-131 116-206 (381)
7 1b0u_A Histidine permease; ABC 100.0 2.3E-29 7.8E-34 195.3 7.3 88 44-131 135-225 (262)
8 2onk_A Molybdate/tungstate ABC 100.0 5E-29 1.7E-33 191.4 8.9 88 44-131 109-199 (240)
9 4g1u_C Hemin import ATP-bindin 100.0 1.1E-28 3.9E-33 192.0 10.1 89 43-131 123-220 (266)
10 2nq2_C Hypothetical ABC transp 100.0 1.6E-28 5.4E-33 189.9 9.8 88 44-131 111-201 (253)
11 3d31_A Sulfate/molybdate ABC t 100.0 7.9E-29 2.7E-33 199.8 7.6 88 44-131 110-200 (348)
12 1oxx_K GLCV, glucose, ABC tran 100.0 1.1E-28 3.9E-33 199.1 8.2 88 44-131 123-213 (353)
13 2yyz_A Sugar ABC transporter, 100.0 1.6E-28 5.4E-33 198.8 9.0 88 44-131 116-206 (359)
14 3gfo_A Cobalt import ATP-bindi 99.9 3E-28 1E-32 190.7 9.4 88 44-131 126-216 (275)
15 1g6h_A High-affinity branched- 99.9 3.8E-28 1.3E-32 187.7 9.7 88 44-131 136-225 (257)
16 1z47_A CYSA, putative ABC-tran 99.9 1.6E-28 5.6E-33 198.5 7.6 88 44-131 128-218 (355)
17 2it1_A 362AA long hypothetical 99.9 2.5E-28 8.6E-33 197.8 8.2 88 44-131 116-206 (362)
18 2olj_A Amino acid ABC transpor 99.9 9.1E-28 3.1E-32 186.8 10.8 88 44-131 142-231 (263)
19 1v43_A Sugar-binding transport 99.9 2.1E-28 7.3E-33 198.8 7.5 88 44-131 124-214 (372)
20 1g29_1 MALK, maltose transport 99.9 3.4E-28 1.2E-32 197.5 8.5 88 44-131 122-212 (372)
21 2qi9_C Vitamin B12 import ATP- 99.9 8.1E-28 2.8E-32 185.7 9.8 88 43-130 108-204 (249)
22 1vpl_A ABC transporter, ATP-bi 99.9 1.9E-27 6.5E-32 184.3 10.5 88 44-131 129-218 (256)
23 1sgw_A Putative ABC transporte 99.9 2E-28 7E-33 185.5 4.8 87 44-130 117-204 (214)
24 2yz2_A Putative ABC transporte 99.9 3.2E-27 1.1E-31 183.5 9.9 89 43-131 118-210 (266)
25 2ihy_A ABC transporter, ATP-bi 99.9 4.5E-27 1.5E-31 184.2 8.4 88 44-131 144-235 (279)
26 2d2e_A SUFC protein; ABC-ATPas 99.9 5.9E-27 2E-31 180.4 8.0 88 44-131 124-216 (250)
27 2zu0_C Probable ATP-dependent 99.9 1.8E-26 6.1E-31 179.4 10.3 87 44-130 145-236 (267)
28 2ixe_A Antigen peptide transpo 99.9 3.7E-26 1.3E-30 178.1 9.9 87 45-131 138-228 (271)
29 2ff7_A Alpha-hemolysin translo 99.9 1.2E-25 4E-30 173.1 9.7 77 54-131 139-215 (247)
30 2pjz_A Hypothetical protein ST 99.9 2.2E-25 7.4E-30 173.4 9.9 84 44-130 110-197 (263)
31 1yqt_A RNAse L inhibitor; ATP- 99.9 3.6E-25 1.2E-29 186.6 11.4 89 43-131 140-230 (538)
32 2ghi_A Transport protein; mult 99.9 2.5E-25 8.6E-30 172.4 9.2 76 55-131 150-225 (260)
33 3ozx_A RNAse L inhibitor; ATP 99.9 3E-25 1E-29 187.3 9.6 88 44-131 368-458 (538)
34 1mv5_A LMRA, multidrug resista 99.9 1.1E-25 3.8E-30 172.4 6.3 75 56-131 135-209 (243)
35 3gd7_A Fusion complex of cysti 99.9 4.6E-26 1.6E-30 186.1 4.3 88 43-131 126-225 (390)
36 3bk7_A ABC transporter ATP-bin 99.9 7E-25 2.4E-29 187.3 10.9 88 43-130 210-299 (607)
37 3j16_B RLI1P; ribosome recycli 99.9 8E-25 2.7E-29 187.1 9.7 88 44-131 450-540 (608)
38 3nh6_A ATP-binding cassette SU 99.9 1.3E-24 4.5E-29 172.5 10.1 77 54-131 184-260 (306)
39 2cbz_A Multidrug resistance-as 99.9 6.6E-25 2.3E-29 167.9 7.2 77 54-131 121-200 (237)
40 3b5x_A Lipid A export ATP-bind 99.9 8.2E-25 2.8E-29 185.2 8.2 76 55-131 475-550 (582)
41 3ozx_A RNAse L inhibitor; ATP 99.9 2E-24 6.7E-29 182.4 10.4 88 43-131 120-209 (538)
42 3j16_B RLI1P; ribosome recycli 99.9 1.9E-24 6.3E-29 184.8 10.3 88 44-131 204-293 (608)
43 2pze_A Cystic fibrosis transme 99.9 9.4E-25 3.2E-29 166.1 7.3 76 55-131 125-201 (229)
44 3ux8_A Excinuclease ABC, A sub 99.9 2.1E-24 7.1E-29 185.1 10.0 86 45-130 185-274 (670)
45 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 2.3E-24 8E-29 155.0 8.6 77 54-130 51-133 (148)
46 1yqt_A RNAse L inhibitor; ATP- 99.9 1.6E-24 5.5E-29 182.7 8.8 87 44-130 384-473 (538)
47 2yl4_A ATP-binding cassette SU 99.9 1.8E-24 6.2E-29 183.5 8.0 75 55-130 478-552 (595)
48 3bk7_A ABC transporter ATP-bin 99.9 4.6E-24 1.6E-28 182.3 10.6 88 44-131 454-544 (607)
49 3ux8_A Excinuclease ABC, A sub 99.9 6.6E-24 2.2E-28 182.1 11.3 88 44-131 525-617 (670)
50 3qf4_B Uncharacterized ABC tra 99.9 2.5E-24 8.6E-29 183.0 7.8 74 57-131 488-561 (598)
51 4a82_A Cystic fibrosis transme 99.9 4.3E-24 1.5E-28 180.8 8.2 76 54-130 471-546 (578)
52 2bbs_A Cystic fibrosis transme 99.9 1.1E-23 3.6E-28 165.9 6.9 76 55-131 154-230 (290)
53 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.8E-23 9.7E-28 167.5 8.5 76 55-130 274-355 (365)
54 3b60_A Lipid A export ATP-bind 99.9 4.7E-23 1.6E-27 174.5 9.6 76 54-130 474-549 (582)
55 3qf4_A ABC transporter, ATP-bi 99.9 6.5E-23 2.2E-27 174.0 10.3 77 54-131 473-549 (587)
56 3pih_A Uvrabc system protein A 99.9 5.9E-23 2E-27 182.1 10.3 87 44-130 787-878 (916)
57 3pih_A Uvrabc system protein A 99.9 2.5E-22 8.7E-27 178.0 9.6 87 44-130 446-536 (916)
58 2vf7_A UVRA2, excinuclease ABC 99.9 2.9E-22 9.9E-27 176.4 9.9 87 44-130 712-803 (842)
59 2r6f_A Excinuclease ABC subuni 99.9 5E-22 1.7E-26 176.5 10.7 87 44-130 827-918 (972)
60 2ygr_A Uvrabc system protein A 99.9 9.8E-22 3.3E-26 175.0 9.9 87 44-130 845-936 (993)
61 2iw3_A Elongation factor 3A; a 99.9 6E-22 2.1E-26 176.5 8.5 84 44-130 530-616 (986)
62 2r6f_A Excinuclease ABC subuni 99.9 1.5E-21 5.1E-26 173.5 10.2 86 45-130 487-576 (972)
63 4f4c_A Multidrug resistance pr 99.8 3.3E-22 1.1E-26 182.3 5.5 75 56-131 1213-1287(1321)
64 2ygr_A Uvrabc system protein A 99.8 2.8E-21 9.6E-26 172.1 10.8 86 45-130 504-593 (993)
65 2iw3_A Elongation factor 3A; a 99.8 1E-21 3.6E-26 174.9 8.0 85 44-131 882-970 (986)
66 2vf7_A UVRA2, excinuclease ABC 99.8 4.8E-21 1.6E-25 168.7 10.0 86 45-130 362-451 (842)
67 4aby_A DNA repair protein RECN 99.8 5.4E-21 1.8E-25 154.2 9.2 74 56-130 290-366 (415)
68 3g5u_A MCG1178, multidrug resi 99.8 4.7E-21 1.6E-25 174.4 8.2 76 55-131 1166-1241(1284)
69 3qkt_A DNA double-strand break 99.8 8E-21 2.7E-25 151.2 8.3 77 54-130 242-324 (339)
70 4f4c_A Multidrug resistance pr 99.8 2.7E-21 9.3E-26 176.4 6.2 76 55-131 549-624 (1321)
71 3g5u_A MCG1178, multidrug resi 99.8 1.7E-20 5.8E-25 170.8 10.1 76 54-130 520-595 (1284)
72 4ad8_A DNA repair protein RECN 99.8 1.2E-20 4.1E-25 157.7 7.7 76 54-130 390-468 (517)
73 3kta_B Chromosome segregation 99.8 6E-20 2.1E-24 135.0 10.1 76 54-130 58-137 (173)
74 1e69_A Chromosome segregation 99.8 1.1E-19 3.8E-24 143.5 9.8 75 54-129 213-291 (322)
75 4gp7_A Metallophosphoesterase; 99.8 2.1E-20 7E-25 135.5 0.8 72 58-129 81-168 (171)
76 1w1w_A Structural maintenance 99.7 6.7E-18 2.3E-22 137.8 9.7 76 55-130 328-407 (430)
77 1ye8_A Protein THEP1, hypothet 99.7 4.5E-18 1.5E-22 124.8 4.9 72 54-128 70-152 (178)
78 3auy_A DNA double-strand break 99.7 1.9E-17 6.6E-22 133.1 8.5 74 56-130 276-356 (371)
79 2o5v_A DNA replication and rep 99.6 8.3E-17 2.8E-21 130.0 4.5 70 55-130 259-338 (359)
80 2npi_A Protein CLP1; CLP1-PCF1 99.6 1.7E-17 5.7E-22 137.8 -1.8 80 44-128 220-313 (460)
81 3b85_A Phosphate starvation-in 99.6 5.5E-17 1.9E-21 121.9 -3.7 56 64-125 108-163 (208)
82 1tf7_A KAIC; homohexamer, hexa 99.5 2.3E-15 7.9E-20 125.8 4.1 77 53-130 346-438 (525)
83 1tq4_A IIGP1, interferon-induc 99.4 2.4E-15 8.1E-20 123.6 -5.3 86 43-129 138-247 (413)
84 3thx_B DNA mismatch repair pro 99.4 3.9E-13 1.3E-17 119.5 6.9 82 46-128 720-804 (918)
85 3thx_A DNA mismatch repair pro 99.4 1.4E-12 4.7E-17 116.1 9.6 76 55-130 716-795 (934)
86 2o8b_B DNA mismatch repair pro 99.3 4.5E-12 1.5E-16 113.7 8.0 75 55-130 846-923 (1022)
87 1cr0_A DNA primase/helicase; R 99.2 1.5E-11 5.1E-16 95.0 7.0 63 57-120 126-197 (296)
88 1znw_A Guanylate kinase, GMP k 99.2 2.4E-13 8.2E-18 100.5 -5.2 67 54-131 128-200 (207)
89 1nlf_A Regulatory protein REPA 99.2 3.8E-11 1.3E-15 92.3 6.5 76 45-123 102-184 (279)
90 2w0m_A SSO2452; RECA, SSPF, un 99.2 5.2E-11 1.8E-15 87.3 6.8 71 60-130 103-187 (235)
91 2pt7_A CAG-ALFA; ATPase, prote 99.2 9.2E-12 3.2E-16 99.0 2.7 61 63-130 225-285 (330)
92 2ehv_A Hypothetical protein PH 99.1 1.6E-11 5.5E-16 91.3 3.6 71 61-131 118-204 (251)
93 1ewq_A DNA mismatch repair pro 99.0 2.1E-10 7E-15 100.4 6.6 68 56-126 631-704 (765)
94 3sop_A Neuronal-specific septi 99.0 7.1E-12 2.4E-16 97.2 -5.2 62 54-123 92-153 (270)
95 1wb9_A DNA mismatch repair pro 99.0 4.9E-10 1.7E-14 98.4 5.6 73 56-129 665-739 (800)
96 3b9q_A Chloroplast SRP recepto 98.9 9.3E-11 3.2E-15 92.3 -0.5 64 45-118 188-255 (302)
97 2cvh_A DNA repair and recombin 98.9 2.2E-09 7.4E-14 78.4 6.1 64 58-121 82-157 (220)
98 1z6g_A Guanylate kinase; struc 98.9 5.3E-12 1.8E-16 94.5 -9.2 71 59-129 121-204 (218)
99 2og2_A Putative signal recogni 98.8 4.4E-10 1.5E-14 90.7 0.5 64 45-118 245-312 (359)
100 2eyu_A Twitching motility prot 98.8 4.3E-09 1.5E-13 81.1 5.7 56 68-130 88-143 (261)
101 4a74_A DNA repair and recombin 98.8 2.6E-09 8.9E-14 78.4 3.4 71 60-130 99-195 (231)
102 1tf7_A KAIC; homohexamer, hexa 98.7 2.3E-08 7.9E-13 83.4 6.6 65 67-131 126-206 (525)
103 3jvv_A Twitching mobility prot 98.7 1.4E-08 4.7E-13 81.7 4.9 54 70-130 188-241 (356)
104 1pzn_A RAD51, DNA repair and r 98.6 2.9E-08 1E-12 79.2 5.1 63 62-124 208-290 (349)
105 3aez_A Pantothenate kinase; tr 98.6 2.9E-10 1E-14 89.8 -7.0 70 45-123 161-231 (312)
106 1pui_A ENGB, probable GTP-bind 98.5 3.8E-08 1.3E-12 71.2 2.7 67 46-112 133-202 (210)
107 2v9p_A Replication protein E1; 98.5 3.3E-10 1.1E-14 89.7 -9.8 51 58-129 198-248 (305)
108 2qnr_A Septin-2, protein NEDD5 98.4 2.5E-09 8.5E-14 83.8 -5.6 59 55-121 108-168 (301)
109 2i3b_A HCR-ntpase, human cance 98.4 1.2E-08 4.2E-13 75.1 -2.1 62 55-120 78-149 (189)
110 3ec2_A DNA replication protein 98.4 9.6E-07 3.3E-11 63.0 7.4 48 74-121 96-144 (180)
111 2obl_A ESCN; ATPase, hydrolase 98.4 1.9E-08 6.4E-13 80.6 -1.9 64 56-130 167-237 (347)
112 2dpy_A FLII, flagellum-specifi 98.3 7E-08 2.4E-12 79.5 -1.3 61 58-129 256-325 (438)
113 3asz_A Uridine kinase; cytidin 98.2 2.2E-10 7.6E-15 83.9 -16.2 76 45-120 73-161 (211)
114 2kjq_A DNAA-related protein; s 98.1 3.1E-06 1.1E-10 59.7 4.8 45 74-119 79-124 (149)
115 1n0w_A DNA repair protein RAD5 98.1 5.3E-06 1.8E-10 61.0 5.8 64 60-123 98-177 (243)
116 2jeo_A Uridine-cytidine kinase 98.0 1.6E-07 5.5E-12 70.7 -3.5 60 53-123 109-168 (245)
117 1sxj_E Activator 1 40 kDa subu 98.0 7.5E-06 2.6E-10 63.7 5.3 46 75-122 131-176 (354)
118 2ewv_A Twitching motility prot 97.9 1E-05 3.4E-10 65.0 4.4 56 68-130 199-254 (372)
119 1rj9_A FTSY, signal recognitio 97.9 2.4E-06 8.2E-11 67.1 0.5 56 60-122 202-260 (304)
120 2qag_C Septin-7; cell cycle, c 97.9 1.7E-06 5.7E-11 71.0 -0.6 58 60-122 118-179 (418)
121 3szr_A Interferon-induced GTP- 97.8 7.5E-06 2.5E-10 69.7 2.9 48 76-123 144-199 (608)
122 1lw7_A Transcriptional regulat 97.7 3.8E-06 1.3E-10 66.8 -0.7 62 58-119 256-328 (365)
123 2bbw_A Adenylate kinase 4, AK4 97.7 2.6E-07 8.8E-12 69.4 -7.2 46 55-107 147-197 (246)
124 2bdt_A BH3686; alpha-beta prot 97.6 1.4E-07 4.9E-12 67.7 -9.0 65 62-130 96-168 (189)
125 1nij_A Hypothetical protein YJ 97.6 4.3E-06 1.5E-10 65.6 -1.5 50 60-121 141-190 (318)
126 1udx_A The GTP-binding protein 97.5 1.8E-05 6.3E-10 64.7 1.2 59 55-118 247-306 (416)
127 2r6a_A DNAB helicase, replicat 97.5 0.00018 6E-09 58.9 6.7 58 59-118 294-362 (454)
128 2dr3_A UPF0273 protein PH0284; 97.5 0.00016 5.6E-09 52.9 5.9 46 77-122 127-175 (247)
129 2xau_A PRE-mRNA-splicing facto 97.4 6.3E-05 2.1E-09 65.7 3.0 71 55-125 185-257 (773)
130 3lda_A DNA repair protein RAD5 97.3 0.00024 8.1E-09 57.8 5.2 44 77-120 272-328 (400)
131 1s96_A Guanylate kinase, GMP k 97.2 0.00042 1.5E-08 51.6 5.4 45 72-125 101-145 (219)
132 1odf_A YGR205W, hypothetical 3 97.2 4.8E-06 1.6E-10 64.9 -5.8 39 56-94 130-168 (290)
133 2zr9_A Protein RECA, recombina 97.0 0.0014 4.7E-08 52.2 6.6 56 66-121 125-199 (349)
134 2ce7_A Cell division protein F 97.0 0.0015 5.1E-08 54.3 6.7 61 63-123 93-167 (476)
135 1zp6_A Hypothetical protein AT 96.9 6E-05 2.1E-09 53.6 -1.8 56 55-119 104-159 (191)
136 3euj_A Chromosome partition pr 96.8 0.0037 1.3E-07 52.1 7.8 61 55-119 374-451 (483)
137 2f1r_A Molybdopterin-guanine d 96.7 1.5E-05 5E-10 57.7 -6.5 52 60-111 103-164 (171)
138 2e87_A Hypothetical protein PH 96.5 0.0054 1.8E-07 48.3 6.6 66 54-121 225-293 (357)
139 2ius_A DNA translocase FTSK; n 96.3 6.5E-05 2.2E-09 63.1 -6.0 61 60-121 268-343 (512)
140 1ls1_A Signal recognition part 96.2 0.016 5.5E-07 44.8 7.5 55 62-117 164-219 (295)
141 1lw7_A Transcriptional regulat 96.0 0.004 1.4E-07 49.2 3.1 29 60-88 296-329 (365)
142 2px0_A Flagellar biosynthesis 95.9 0.0062 2.1E-07 47.3 4.0 59 67-129 173-236 (296)
143 4a1f_A DNAB helicase, replicat 95.9 0.025 8.7E-07 44.9 7.6 55 59-118 108-164 (338)
144 2qag_B Septin-6, protein NEDD5 95.9 0.0034 1.2E-07 51.6 2.5 58 60-120 161-219 (427)
145 1vma_A Cell division protein F 95.5 0.0072 2.5E-07 47.3 2.9 40 46-89 155-197 (306)
146 2z4s_A Chromosomal replication 95.4 0.026 8.9E-07 45.9 6.0 43 78-120 194-237 (440)
147 2gza_A Type IV secretion syste 95.0 0.011 3.7E-07 47.0 2.5 62 62-130 236-297 (361)
148 1ni3_A YCHF GTPase, YCHF GTP-b 94.8 0.00015 5.2E-09 58.9 -9.0 51 78-130 139-193 (392)
149 1fnn_A CDC6P, cell division co 94.7 0.086 2.9E-06 40.6 6.9 47 77-124 124-173 (389)
150 2oap_1 GSPE-2, type II secreti 94.2 1E-05 3.4E-10 67.8 -17.7 58 58-127 398-458 (511)
151 1oix_A RAS-related protein RAB 94.1 0.029 9.8E-07 39.7 2.7 37 67-105 152-188 (191)
152 3b9p_A CG5977-PA, isoform A; A 93.7 0.19 6.4E-06 37.7 6.9 60 62-121 97-170 (297)
153 1g5t_A COB(I)alamin adenosyltr 93.5 0.042 1.4E-06 40.6 2.7 64 66-130 106-175 (196)
154 3bh0_A DNAB-like replicative h 92.5 0.18 6.3E-06 38.9 5.3 54 61-119 134-190 (315)
155 3e70_C DPA, signal recognition 92.1 0.15 5.1E-06 40.1 4.3 48 66-120 231-279 (328)
156 2qm8_A GTPase/ATPase; G protei 91.5 0.07 2.4E-06 41.9 1.8 47 58-108 208-260 (337)
157 2f9l_A RAB11B, member RAS onco 91.3 0.13 4.5E-06 36.2 2.9 36 69-106 130-165 (199)
158 4ag6_A VIRB4 ATPase, type IV s 91.1 0.27 9.4E-06 38.7 4.9 47 78-124 262-311 (392)
159 2z43_A DNA repair and recombin 91.0 0.19 6.5E-06 38.9 3.8 56 67-122 189-260 (324)
160 1l8q_A Chromosomal replication 90.9 0.64 2.2E-05 35.3 6.7 44 76-119 96-140 (324)
161 2eyu_A Twitching motility prot 90.9 6.8E-05 2.3E-09 57.4 -15.8 57 60-118 172-238 (261)
162 2qby_A CDC6 homolog 1, cell di 90.5 0.18 6.2E-06 38.5 3.2 47 78-124 128-177 (386)
163 1v5w_A DMC1, meiotic recombina 90.2 0.36 1.2E-05 37.7 4.8 56 67-122 204-276 (343)
164 1u94_A RECA protein, recombina 90.0 0.98 3.4E-05 35.7 7.2 56 67-122 128-202 (356)
165 2rcn_A Probable GTPase ENGC; Y 89.4 0.12 4E-06 41.4 1.3 48 44-107 297-345 (358)
166 1lvg_A Guanylate kinase, GMP k 89.0 0.0088 3E-07 43.2 -5.1 52 72-123 117-177 (198)
167 2ewv_A Twitching motility prot 88.7 0.00011 3.7E-09 59.0 -16.9 59 60-120 283-351 (372)
168 3c8u_A Fructokinase; YP_612366 88.6 0.00093 3.2E-08 48.6 -10.6 30 59-88 110-140 (208)
169 2w58_A DNAI, primosome compone 87.8 0.27 9.3E-06 34.7 2.3 48 76-123 113-163 (202)
170 3bos_A Putative DNA replicatio 87.0 0.45 1.5E-05 33.7 3.1 44 76-119 102-147 (242)
171 2r8r_A Sensor protein; KDPD, P 85.9 0.49 1.7E-05 35.6 2.8 48 71-118 77-125 (228)
172 2x8a_A Nuclear valosin-contain 85.8 0.0019 6.4E-08 49.4 -10.7 47 55-103 132-190 (274)
173 3szr_A Interferon-induced GTP- 85.8 0.55 1.9E-05 39.7 3.5 60 58-118 162-223 (608)
174 3k1j_A LON protease, ATP-depen 85.7 0.13 4.5E-06 43.3 -0.4 49 57-106 180-228 (604)
175 2b8t_A Thymidine kinase; deoxy 85.5 0.92 3.2E-05 33.7 4.2 37 78-119 89-125 (223)
176 3hr8_A Protein RECA; alpha and 85.2 4.2 0.00015 32.2 8.2 53 67-119 126-197 (356)
177 1njg_A DNA polymerase III subu 85.2 1.1 3.7E-05 31.2 4.3 43 78-122 126-168 (250)
178 1in4_A RUVB, holliday junction 84.2 0.069 2.3E-06 41.5 -2.6 50 54-124 156-206 (334)
179 2orv_A Thymidine kinase; TP4A 82.9 2.3 7.7E-05 32.1 5.4 37 77-119 89-125 (234)
180 1xp8_A RECA protein, recombina 82.9 5.2 0.00018 31.7 7.8 55 67-121 139-212 (366)
181 2q6t_A DNAB replication FORK h 81.7 2.2 7.6E-05 34.2 5.3 50 70-119 300-362 (444)
182 1sxj_D Activator 1 41 kDa subu 81.3 2.2 7.4E-05 32.3 4.9 42 78-121 133-174 (353)
183 1jcn_A Inosine monophosphate d 81.3 0.015 5.3E-07 48.1 -7.8 45 73-123 28-73 (514)
184 1jjv_A Dephospho-COA kinase; P 80.7 0.074 2.5E-06 37.9 -3.5 65 62-130 61-128 (206)
185 2qgz_A Helicase loader, putati 79.4 0.88 3E-05 35.0 2.1 48 76-123 212-262 (308)
186 3llo_A Prestin; STAS domain, c 78.9 6.6 0.00023 26.1 6.3 46 77-122 62-108 (143)
187 3t34_A Dynamin-related protein 77.3 1.8 6E-05 33.7 3.3 63 59-123 153-216 (360)
188 2qtf_A Protein HFLX, GTP-bindi 76.2 1.2 4E-05 35.3 2.0 49 55-107 299-352 (364)
189 3h4m_A Proteasome-activating n 76.1 3.1 0.00011 30.6 4.2 54 70-123 102-169 (285)
190 3cf0_A Transitional endoplasmi 76.0 5.4 0.00018 30.0 5.7 55 69-123 99-167 (301)
191 3d8b_A Fidgetin-like protein 1 75.8 7.3 0.00025 30.1 6.5 55 68-122 166-233 (357)
192 3oiz_A Antisigma-factor antago 75.7 4.1 0.00014 25.8 4.3 43 77-119 42-85 (99)
193 4dgf_A Sulfate transporter sul 75.7 9.3 0.00032 25.3 6.3 46 77-122 50-96 (135)
194 3ny7_A YCHM protein, sulfate t 75.7 4.5 0.00016 26.3 4.6 45 77-122 44-89 (118)
195 2q6t_A DNAB replication FORK h 74.2 29 0.00098 27.6 9.8 55 59-118 263-318 (444)
196 1p9r_A General secretion pathw 73.9 0.026 8.8E-07 46.0 -8.4 36 46-84 280-315 (418)
197 2orw_A Thymidine kinase; TMTK, 73.8 2.4 8.3E-05 29.9 3.0 40 77-121 75-114 (184)
198 2chg_A Replication factor C sm 72.5 7.3 0.00025 26.5 5.3 43 77-121 101-143 (226)
199 3llm_A ATP-dependent RNA helic 72.5 7 0.00024 28.1 5.3 54 61-116 161-215 (235)
200 2i1q_A DNA repair and recombin 72.1 3.8 0.00013 31.1 4.0 52 68-119 191-258 (322)
201 3co5_A Putative two-component 72.1 11 0.00037 25.0 5.9 40 78-118 75-114 (143)
202 3kl4_A SRP54, signal recogniti 71.9 5 0.00017 32.7 4.8 52 68-119 169-223 (433)
203 1xx6_A Thymidine kinase; NESG, 70.8 8.7 0.0003 27.5 5.4 39 77-120 80-118 (191)
204 2dy1_A Elongation factor G; tr 70.3 9.7 0.00033 32.4 6.4 44 75-123 96-139 (665)
205 4dgh_A Sulfate permease family 70.2 19 0.00066 23.3 10.1 46 77-122 47-93 (130)
206 1ega_A Protein (GTP-binding pr 69.9 2.2 7.5E-05 32.5 2.1 56 61-123 101-162 (301)
207 3io5_A Recombination and repai 68.9 11 0.00036 29.9 5.9 77 45-121 74-173 (333)
208 1b9m_A Protein (mode); DNA-bin 68.8 1.1 3.6E-05 33.2 0.1 37 44-80 57-93 (265)
209 1sbo_A Putative anti-sigma fac 68.7 18 0.00061 22.3 6.6 47 75-121 39-87 (110)
210 1q57_A DNA primase/helicase; d 67.8 15 0.00051 29.7 6.8 53 67-120 341-404 (503)
211 2qz4_A Paraplegin; AAA+, SPG7, 67.5 23 0.00078 25.2 7.2 54 70-123 90-158 (262)
212 2yhs_A FTSY, cell division pro 66.9 3.1 0.0001 34.8 2.5 52 64-122 396-450 (503)
213 2ka5_A Putative anti-sigma fac 65.5 24 0.00081 22.9 6.4 46 75-120 48-94 (125)
214 1x52_A Pelota homolog, CGI-17; 62.3 9.8 0.00034 25.6 4.0 60 60-122 38-99 (124)
215 4fcw_A Chaperone protein CLPB; 62.2 13 0.00045 27.3 5.1 36 70-106 110-146 (311)
216 1jr3_A DNA polymerase III subu 61.7 8.7 0.0003 29.0 4.1 43 77-121 118-160 (373)
217 3bt7_A TRNA (uracil-5-)-methyl 61.7 11 0.00037 29.3 4.8 39 78-124 295-333 (369)
218 2kln_A Probable sulphate-trans 61.5 13 0.00046 24.2 4.6 44 78-121 47-91 (130)
219 3tsm_A IGPS, indole-3-glycerol 59.9 40 0.0014 25.6 7.5 51 71-126 135-185 (272)
220 3bh0_A DNAB-like replicative h 58.5 21 0.00073 27.0 5.8 53 68-120 167-231 (315)
221 1jr3_D DNA polymerase III, del 58.4 9.2 0.00031 29.0 3.7 47 72-119 70-116 (343)
222 1ypw_A Transitional endoplasmi 57.9 9.8 0.00034 33.1 4.2 57 68-124 287-354 (806)
223 1th8_B Anti-sigma F factor ant 57.2 24 0.00082 21.9 5.1 43 79-121 43-86 (116)
224 2vhj_A Ntpase P4, P4; non- hyd 57.2 32 0.0011 27.1 6.7 56 63-119 167-235 (331)
225 2v1u_A Cell division control p 56.9 6.7 0.00023 29.6 2.7 44 78-121 130-178 (387)
226 2vo9_A EAD500, L-alanyl-D-glut 56.4 16 0.00054 26.0 4.5 32 88-119 30-61 (179)
227 1e9r_A Conjugal transfer prote 56.2 6.7 0.00023 30.9 2.7 44 78-124 279-322 (437)
228 3hu3_A Transitional endoplasmi 55.8 16 0.00056 29.9 5.0 53 70-122 289-352 (489)
229 4b4t_L 26S protease subunit RP 55.8 41 0.0014 27.2 7.4 57 68-124 264-334 (437)
230 2j9r_A Thymidine kinase; TK1, 55.7 17 0.00059 26.7 4.7 38 78-120 101-138 (214)
231 3q6v_A Beta-lactamase; metallo 55.7 12 0.00042 26.2 3.8 39 78-119 34-72 (233)
232 1d2n_A N-ethylmaleimide-sensit 54.9 19 0.00066 26.2 4.9 54 71-124 117-181 (272)
233 4b4t_J 26S protease regulatory 54.8 16 0.00056 29.5 4.8 55 69-123 232-300 (405)
234 1tmy_A CHEY protein, TMY; chem 54.2 34 0.0012 20.7 6.0 38 77-118 46-83 (120)
235 1iqp_A RFCS; clamp loader, ext 54.2 23 0.00078 26.0 5.3 43 77-121 109-151 (327)
236 3f6c_A Positive transcription 54.1 36 0.0012 21.0 6.4 40 77-120 45-84 (134)
237 3u61_B DNA polymerase accessor 53.7 22 0.00075 26.5 5.1 42 78-121 105-147 (324)
238 4eyb_A Beta-lactamase NDM-1; m 53.0 20 0.00069 26.3 4.8 39 78-119 83-121 (270)
239 1zxx_A 6-phosphofructokinase; 52.5 41 0.0014 26.2 6.6 52 63-119 170-223 (319)
240 4b4t_I 26S protease regulatory 52.2 24 0.0008 28.9 5.3 57 68-124 265-335 (437)
241 1sxj_B Activator 1 37 kDa subu 52.2 17 0.00059 26.6 4.3 42 78-121 107-148 (323)
242 3cu5_A Two component transcrip 51.9 42 0.0014 21.3 5.8 39 77-119 48-86 (141)
243 3cmw_A Protein RECA, recombina 51.9 43 0.0015 32.0 7.6 53 68-120 449-520 (1706)
244 2wji_A Ferrous iron transport 51.8 28 0.00094 23.0 5.0 41 77-124 80-122 (165)
245 1ixk_A Methyltransferase; open 51.8 17 0.00058 27.6 4.3 42 79-120 188-249 (315)
246 3bgw_A DNAB-like replicative h 49.7 25 0.00084 28.3 5.1 53 61-118 263-318 (444)
247 2jk1_A HUPR, hydrogenase trans 49.7 45 0.0015 20.9 5.6 39 76-118 42-80 (139)
248 1xp2_A EAD500, PLY500, L-alany 48.8 24 0.00083 25.4 4.4 30 89-118 31-60 (179)
249 1pfk_A Phosphofructokinase; tr 48.5 49 0.0017 25.7 6.5 52 63-119 171-224 (320)
250 4b4t_M 26S protease regulatory 48.5 34 0.0012 27.7 5.8 57 68-124 264-334 (434)
251 4b4t_K 26S protease regulatory 48.4 50 0.0017 26.7 6.7 54 70-123 257-324 (428)
252 1mvo_A PHOP response regulator 47.8 47 0.0016 20.5 6.7 39 76-118 45-83 (136)
253 3a10_A Response regulator; pho 47.6 43 0.0015 20.0 6.2 39 77-119 44-82 (116)
254 3eul_A Possible nitrate/nitrit 47.3 52 0.0018 20.9 6.5 39 77-119 60-98 (152)
255 1gml_A T-complex protein 1 sub 47.3 31 0.0011 24.3 4.8 46 77-122 26-90 (178)
256 3nhm_A Response regulator; pro 46.9 48 0.0016 20.4 6.5 41 76-119 45-86 (133)
257 4e7p_A Response regulator; DNA 46.6 54 0.0018 20.9 5.9 40 76-119 64-103 (150)
258 3mca_B Protein DOM34, elongati 46.1 39 0.0013 27.0 5.7 52 71-122 299-352 (390)
259 3iog_A Beta-lactamase; hydrola 45.8 19 0.00066 25.1 3.5 38 79-119 32-69 (227)
260 3eie_A Vacuolar protein sortin 45.6 66 0.0023 24.0 6.8 53 70-122 102-166 (322)
261 1dbw_A Transcriptional regulat 45.3 51 0.0017 20.2 5.7 40 76-119 45-84 (126)
262 1jql_B DNA polymerase III, del 45.3 19 0.00066 24.0 3.3 58 61-119 59-116 (140)
263 4a1f_A DNAB helicase, replicat 45.1 41 0.0014 26.2 5.6 63 60-124 137-210 (338)
264 3cmw_A Protein RECA, recombina 45.0 63 0.0022 30.9 7.6 53 67-119 797-868 (1706)
265 3eod_A Protein HNR; response r 44.8 42 0.0014 20.6 4.8 39 76-118 49-87 (130)
266 4b4t_H 26S protease regulatory 44.8 39 0.0013 27.8 5.6 56 68-123 292-361 (467)
267 3o63_A Probable thiamine-phosp 44.3 83 0.0028 23.2 7.0 53 72-125 50-110 (243)
268 1a6d_A Thermosome (alpha subun 44.2 20 0.00069 29.8 3.9 47 76-122 231-296 (545)
269 3lxx_A GTPase IMAP family memb 44.1 51 0.0017 23.3 5.6 43 76-118 110-154 (239)
270 3b2n_A Uncharacterized protein 44.1 56 0.0019 20.3 6.3 39 77-119 48-86 (133)
271 1qvr_A CLPB protein; coiled co 44.0 25 0.00085 30.6 4.5 34 71-105 652-686 (854)
272 3n70_A Transport activator; si 43.9 30 0.001 22.7 4.1 40 78-119 76-115 (145)
273 3f6p_A Transcriptional regulat 43.9 53 0.0018 20.0 5.7 38 76-118 44-81 (120)
274 1srr_A SPO0F, sporulation resp 43.8 53 0.0018 19.9 6.7 39 76-118 45-83 (124)
275 1xwi_A SKD1 protein; VPS4B, AA 43.6 80 0.0027 23.8 7.0 52 70-121 97-160 (322)
276 3lua_A Response regulator rece 43.6 58 0.002 20.3 5.8 40 77-118 49-89 (140)
277 3cz5_A Two-component response 43.6 61 0.0021 20.6 6.6 39 76-118 49-87 (153)
278 2qxy_A Response regulator; reg 43.0 59 0.002 20.3 5.8 38 77-119 47-84 (142)
279 3i42_A Response regulator rece 42.6 56 0.0019 19.9 5.9 40 77-119 46-86 (127)
280 1ojl_A Transcriptional regulat 42.5 47 0.0016 24.9 5.5 41 78-119 96-146 (304)
281 3hzh_A Chemotaxis response reg 42.2 67 0.0023 20.7 6.2 37 78-118 83-119 (157)
282 1we3_A CPN60(groel); chaperoni 42.1 17 0.00057 30.4 3.0 42 76-122 213-254 (543)
283 1iy2_A ATP-dependent metallopr 42.1 0.12 4.3E-06 38.6 -9.2 29 57-87 166-194 (278)
284 2rjn_A Response regulator rece 42.1 65 0.0022 20.5 5.9 41 76-120 49-89 (154)
285 1lv7_A FTSH; alpha/beta domain 41.8 62 0.0021 23.1 5.8 53 71-123 97-163 (257)
286 3hdg_A Uncharacterized protein 41.7 61 0.0021 20.0 5.3 39 77-119 50-88 (137)
287 3ajd_A Putative methyltransfer 41.7 13 0.00046 27.4 2.2 43 78-120 156-214 (274)
288 3qja_A IGPS, indole-3-glycerol 41.5 67 0.0023 24.1 6.2 50 71-125 128-177 (272)
289 1a5t_A Delta prime, HOLB; zinc 41.5 20 0.00069 27.2 3.2 43 77-121 107-149 (334)
290 3v2d_F 50S ribosomal protein L 41.3 50 0.0017 24.2 5.2 62 58-122 98-163 (210)
291 2qp9_X Vacuolar protein sortin 41.3 79 0.0027 24.2 6.7 52 70-121 135-198 (355)
292 1zgz_A Torcad operon transcrip 41.3 57 0.002 19.6 6.7 38 77-119 45-82 (122)
293 2a6p_A Possible phosphoglycera 40.9 29 0.001 24.5 3.9 25 96-120 128-154 (208)
294 3crn_A Response regulator rece 40.8 63 0.0022 20.0 6.0 39 76-118 45-83 (132)
295 3zxn_A RSBS, anti-sigma-factor 40.8 72 0.0025 20.6 6.3 52 73-124 36-89 (123)
296 1a6d_B Thermosome (beta subuni 40.3 30 0.001 28.7 4.3 47 76-122 232-297 (543)
297 3vfd_A Spastin; ATPase, microt 40.2 60 0.0021 25.0 5.9 53 71-123 200-265 (389)
298 3jte_A Response regulator rece 40.2 66 0.0023 20.0 6.3 39 76-118 47-85 (143)
299 3bgw_A DNAB-like replicative h 40.1 55 0.0019 26.2 5.8 57 61-119 291-359 (444)
300 3lnc_A Guanylate kinase, GMP k 40.1 1.1 3.8E-05 32.3 -4.0 50 76-125 146-200 (231)
301 3t15_A Ribulose bisphosphate c 40.0 47 0.0016 24.7 5.1 13 76-88 97-109 (293)
302 3cmu_A Protein RECA, recombina 39.8 79 0.0027 30.9 7.4 56 66-121 447-521 (2050)
303 1h4x_A SPOIIAA, anti-sigma F f 38.7 66 0.0023 19.9 5.0 43 78-120 41-84 (117)
304 2ftc_D Mitochondrial ribosomal 38.1 75 0.0026 22.5 5.6 40 66-107 73-115 (175)
305 2jjq_A Uncharacterized RNA met 37.8 83 0.0028 25.0 6.5 41 78-124 353-393 (425)
306 2gno_A DNA polymerase III, gam 37.7 25 0.00086 26.7 3.2 42 78-121 82-123 (305)
307 4a8j_C Elongator complex prote 37.5 88 0.003 24.1 6.2 44 77-122 148-198 (280)
308 3q58_A N-acetylmannosamine-6-p 37.5 46 0.0016 24.3 4.5 50 72-125 95-144 (229)
309 1qkk_A DCTD, C4-dicarboxylate 37.3 78 0.0027 20.1 5.3 39 77-119 46-84 (155)
310 3syl_A Protein CBBX; photosynt 37.2 1.2E+02 0.004 22.0 7.3 41 78-119 130-178 (309)
311 1ujc_A Phosphohistidine phosph 37.0 36 0.0012 22.9 3.7 25 97-121 86-111 (161)
312 3lte_A Response regulator; str 36.9 72 0.0025 19.5 5.8 40 76-118 48-88 (132)
313 1dmg_A Ribosomal protein L4; a 36.7 55 0.0019 24.2 4.9 52 66-119 104-158 (225)
314 3nwy_A Uridylate kinase; allos 36.7 48 0.0016 25.2 4.7 29 89-117 67-95 (281)
315 3cmu_A Protein RECA, recombina 36.7 1E+02 0.0035 30.2 7.6 55 69-123 799-872 (2050)
316 2dpm_A M.dpnii 1, protein (ade 36.6 96 0.0033 23.3 6.4 48 78-125 187-248 (284)
317 3r7a_A Phosphoglycerate mutase 36.6 31 0.0011 24.6 3.4 25 96-120 155-184 (237)
318 1kgs_A DRRD, DNA binding respo 36.5 99 0.0034 21.0 6.6 39 76-118 44-82 (225)
319 1h2e_A Phosphatase, YHFR; hydr 36.3 36 0.0012 23.9 3.7 25 96-120 126-152 (207)
320 3ilx_A First ORF in transposon 35.5 76 0.0026 21.2 5.1 51 65-118 21-71 (143)
321 1a04_A Nitrate/nitrite respons 35.5 1E+02 0.0035 20.9 6.3 39 76-118 49-87 (215)
322 3hv2_A Response regulator/HD d 35.4 85 0.0029 19.9 6.1 40 76-119 56-95 (153)
323 3f2i_A ALR0221 protein; alpha- 35.3 57 0.0019 22.6 4.6 59 61-122 51-114 (172)
324 2b4a_A BH3024; flavodoxin-like 35.0 77 0.0026 19.6 4.9 37 77-117 59-95 (138)
325 2qr3_A Two-component system re 35.0 80 0.0027 19.4 5.8 38 77-118 46-88 (140)
326 1k68_A Phytochrome response re 34.7 78 0.0027 19.3 5.0 39 77-118 54-93 (140)
327 3n53_A Response regulator rece 34.6 63 0.0022 20.1 4.5 39 77-118 45-84 (140)
328 3p9d_A T-complex protein 1 sub 34.5 38 0.0013 28.2 4.1 45 78-122 241-304 (559)
329 2pl1_A Transcriptional regulat 34.5 75 0.0026 19.0 6.4 39 76-118 42-80 (121)
330 3ilh_A Two component response 34.3 83 0.0028 19.4 6.2 40 77-119 59-101 (146)
331 3igs_A N-acetylmannosamine-6-p 34.3 55 0.0019 23.9 4.5 50 72-125 95-144 (232)
332 1dz3_A Stage 0 sporulation pro 34.0 81 0.0028 19.3 6.8 40 77-119 47-87 (130)
333 1w4r_A Thymidine kinase; type 33.8 50 0.0017 23.8 4.2 40 76-121 89-128 (195)
334 3heb_A Response regulator rece 33.8 65 0.0022 20.4 4.5 40 76-118 57-97 (152)
335 2zts_A Putative uncharacterize 33.7 84 0.0029 21.8 5.4 45 76-120 133-182 (251)
336 3cfy_A Putative LUXO repressor 33.6 88 0.003 19.5 6.0 40 76-119 46-85 (137)
337 3d4i_A STS-2 protein; PGM, 2H- 33.4 50 0.0017 24.0 4.2 24 97-120 177-204 (273)
338 3gt7_A Sensor protein; structu 33.3 95 0.0032 19.8 6.3 40 76-118 49-89 (154)
339 3kht_A Response regulator; PSI 33.3 89 0.003 19.5 5.0 40 76-118 49-89 (144)
340 3c7t_A Ecdysteroid-phosphate p 33.2 44 0.0015 24.3 3.9 24 97-120 167-194 (263)
341 3p9d_G T-complex protein 1 sub 33.2 62 0.0021 26.9 5.1 46 76-121 236-300 (550)
342 2rdm_A Response regulator rece 33.2 83 0.0028 19.1 6.7 37 78-118 50-87 (132)
343 4dad_A Putative pilus assembly 33.2 90 0.0031 19.5 5.7 38 77-118 66-103 (146)
344 2r25_B Osmosensing histidine p 33.1 88 0.003 19.4 6.5 39 77-118 51-89 (133)
345 3lxw_A GTPase IMAP family memb 33.0 66 0.0022 23.2 4.8 58 64-122 88-151 (247)
346 3l4e_A Uncharacterized peptida 32.9 14 0.00049 26.7 1.1 49 78-131 27-85 (206)
347 3cf2_A TER ATPase, transitiona 32.9 59 0.002 28.6 5.1 56 69-124 288-354 (806)
348 2zay_A Response regulator rece 32.6 92 0.0031 19.4 6.2 39 77-118 51-90 (147)
349 3r0j_A Possible two component 32.4 1.3E+02 0.0044 21.1 6.7 39 76-118 65-103 (250)
350 4a29_A Engineered retro-aldol 32.2 80 0.0028 24.0 5.2 50 71-125 119-168 (258)
351 3gp3_A 2,3-bisphosphoglycerate 32.2 44 0.0015 24.1 3.7 25 96-120 164-192 (257)
352 3mbk_A Ubiquitin-associated an 32.2 41 0.0014 24.4 3.5 24 97-120 168-195 (264)
353 4a7w_A Uridylate kinase; trans 31.9 67 0.0023 23.5 4.7 29 89-117 25-53 (240)
354 3pxi_A Negative regulator of g 31.9 83 0.0028 26.7 5.8 41 77-118 578-628 (758)
355 2hqs_H Peptidoglycan-associate 31.8 84 0.0029 20.2 4.7 42 77-118 3-45 (118)
356 3m4x_A NOL1/NOP2/SUN family pr 31.6 33 0.0011 27.9 3.2 44 77-120 174-237 (456)
357 1h1n_A Endo type cellulase ENG 31.3 89 0.003 23.2 5.4 35 86-120 61-95 (305)
358 2a9o_A Response regulator; ess 31.2 85 0.0029 18.6 6.8 37 77-118 44-80 (120)
359 2j48_A Two-component sensor ki 31.2 81 0.0028 18.4 5.9 40 77-119 44-84 (119)
360 3k7i_B IHH, HHG-2, indian hedg 31.2 18 0.0006 26.4 1.3 32 76-107 69-100 (187)
361 1p2f_A Response regulator; DRR 30.9 94 0.0032 21.1 5.2 38 77-118 42-79 (220)
362 3n1g_B Desert hedgehog protein 30.9 18 0.00061 25.9 1.3 41 77-117 62-108 (170)
363 3p9d_D T-complex protein 1 sub 30.9 57 0.002 26.9 4.5 45 76-120 229-292 (528)
364 2g1p_A DNA adenine methylase; 30.8 1.1E+02 0.0038 22.8 5.9 48 78-125 174-235 (278)
365 3t6o_A Sulfate transporter/ant 30.6 1E+02 0.0035 19.4 6.4 45 77-121 46-92 (121)
366 4hbz_A Putative phosphohistidi 30.5 1E+02 0.0034 21.5 5.3 49 70-122 76-124 (186)
367 1k66_A Phytochrome response re 30.5 65 0.0022 20.0 4.0 26 77-105 61-86 (149)
368 3hdv_A Response regulator; PSI 30.5 96 0.0033 19.0 5.3 40 77-119 50-90 (136)
369 3grc_A Sensor protein, kinase; 30.4 98 0.0034 19.1 6.6 43 76-121 48-91 (140)
370 1mqo_A Beta-lactamase II; alph 30.4 77 0.0026 22.1 4.7 37 79-118 50-86 (227)
371 4emb_A 2,3-bisphosphoglycerate 30.4 49 0.0017 24.3 3.7 25 96-120 182-210 (274)
372 2chq_A Replication factor C sm 30.2 15 0.00051 26.9 0.8 43 77-121 101-143 (319)
373 1tue_A Replication protein E1; 30.0 61 0.0021 23.8 4.1 13 77-89 102-114 (212)
374 1pii_A N-(5'phosphoribosyl)ant 29.9 2E+02 0.0069 23.4 7.6 51 71-126 123-173 (452)
375 1iok_A Chaperonin 60; chaperon 29.9 11 0.00036 31.6 -0.1 42 76-122 215-256 (545)
376 3eqz_A Response regulator; str 29.9 86 0.0029 19.1 4.4 40 78-121 46-85 (135)
377 2r2a_A Uncharacterized protein 29.6 7.5 0.00026 27.9 -1.0 48 77-124 86-137 (199)
378 1ne7_A Glucosamine-6-phosphate 29.6 33 0.0011 25.9 2.6 48 57-104 198-260 (289)
379 1i4n_A Indole-3-glycerol phosp 29.5 1.7E+02 0.0059 21.7 6.8 51 71-126 116-166 (251)
380 4b3f_X DNA-binding protein smu 29.5 1.3E+02 0.0045 24.9 6.6 53 65-121 192-244 (646)
381 4hl2_A Beta-lactamase NDM-1; s 29.3 84 0.0029 22.1 4.8 37 80-119 58-94 (243)
382 1e58_A Phosphoglycerate mutase 29.2 62 0.0021 23.2 4.0 26 95-120 156-185 (249)
383 2qzj_A Two-component response 29.2 77 0.0026 19.8 4.2 38 76-118 46-83 (136)
384 3htu_A Vacuolar protein-sortin 29.0 74 0.0025 19.7 3.8 31 84-117 40-70 (79)
385 1qhf_A Protein (phosphoglycera 28.9 63 0.0022 23.0 4.0 25 96-120 155-183 (240)
386 2qvg_A Two component response 28.9 1.1E+02 0.0036 19.0 5.2 40 77-119 58-98 (143)
387 1qo0_D AMIR; binding protein, 28.8 69 0.0024 21.5 4.1 37 77-118 51-87 (196)
388 3mxo_A Serine/threonine-protei 28.7 70 0.0024 22.1 4.1 26 95-120 113-145 (202)
389 4hyl_A Stage II sporulation pr 28.6 1.1E+02 0.0036 19.0 4.7 43 77-120 41-84 (117)
390 1sxj_C Activator 1 40 kDa subu 28.6 89 0.003 23.4 5.0 43 77-121 109-151 (340)
391 3aq1_B Thermosome subunit; gro 28.6 26 0.00089 28.8 2.0 47 76-122 185-250 (500)
392 3ek6_A Uridylate kinase; UMPK 28.5 92 0.0031 22.8 4.9 33 85-117 23-55 (243)
393 2qsj_A DNA-binding response re 28.4 73 0.0025 20.2 4.0 38 77-118 49-86 (154)
394 2bjv_A PSP operon transcriptio 28.3 94 0.0032 22.2 4.9 41 78-119 100-150 (265)
395 1q3q_A Thermosome alpha subuni 28.3 29 0.00099 28.9 2.3 48 76-123 234-300 (548)
396 2p65_A Hypothetical protein PF 28.3 9.1 0.00031 25.4 -0.7 44 78-121 115-163 (187)
397 1yio_A Response regulatory pro 28.2 1.1E+02 0.0038 20.5 5.1 39 77-119 47-85 (208)
398 1sfl_A 3-dehydroquinate dehydr 28.2 1E+02 0.0035 22.5 5.2 59 58-120 75-135 (238)
399 3kkk_A Phosphoglycerate mutase 28.0 57 0.002 23.5 3.7 26 95-120 165-194 (258)
400 3iyg_A T-complex protein 1 sub 28.0 47 0.0016 27.4 3.5 47 76-122 223-288 (529)
401 3cg4_A Response regulator rece 28.0 1.1E+02 0.0037 18.9 5.4 41 76-119 49-90 (142)
402 1jbk_A CLPB protein; beta barr 28.0 25 0.00085 23.1 1.6 45 77-121 114-162 (195)
403 3kcn_A Adenylate cyclase homol 27.8 1.2E+02 0.004 19.2 6.2 40 77-120 46-86 (151)
404 1fzt_A Phosphoglycerate mutase 27.8 52 0.0018 23.0 3.4 25 96-120 137-165 (211)
405 2j5v_A Glutamate 5-kinase; pro 27.8 72 0.0025 25.1 4.4 32 87-118 19-50 (367)
406 1kp8_A Groel protein; chaperon 27.7 18 0.00063 30.2 1.0 42 76-122 214-255 (547)
407 2rfl_A Putative phosphohistidi 27.3 12 0.00042 25.7 -0.1 35 82-120 83-117 (173)
408 2hhj_A Bisphosphoglycerate mut 27.2 60 0.002 23.7 3.7 26 95-120 161-190 (267)
409 1ys7_A Transcriptional regulat 27.1 1.5E+02 0.0051 20.2 6.7 39 76-118 49-87 (233)
410 3e9c_A ZGC:56074; histidine ph 26.9 61 0.0021 23.6 3.7 11 110-120 175-185 (265)
411 3t8y_A CHEB, chemotaxis respon 26.8 1.3E+02 0.0045 19.4 6.2 38 76-118 69-106 (164)
412 4gud_A Imidazole glycerol phos 26.8 84 0.0029 21.8 4.3 44 79-131 3-46 (211)
413 3iyg_B T-complex protein 1 sub 26.7 87 0.003 25.7 4.9 47 76-122 219-285 (513)
414 3gl9_A Response regulator; bet 26.7 1.1E+02 0.0038 18.5 5.4 40 76-118 44-84 (122)
415 4dcu_A GTP-binding protein ENG 26.6 57 0.0019 25.9 3.7 55 65-123 89-144 (456)
416 3m0z_A Putative aldolase; MCSG 26.3 18 0.0006 27.5 0.6 57 45-106 153-211 (249)
417 1z9d_A Uridylate kinase, UK, U 26.3 1.1E+02 0.0039 22.1 5.1 33 85-117 21-53 (252)
418 3cg0_A Response regulator rece 26.2 1.2E+02 0.004 18.6 7.1 37 77-118 53-90 (140)
419 1m3s_A Hypothetical protein YC 26.0 95 0.0032 20.9 4.4 33 97-129 93-127 (186)
420 1fs5_A Glucosamine-6-phosphate 25.9 48 0.0016 24.4 2.9 38 57-94 198-250 (266)
421 1sqg_A SUN protein, FMU protei 25.8 24 0.00082 28.0 1.3 42 78-119 315-376 (429)
422 3m6y_A 4-hydroxy-2-oxoglutarat 25.6 18 0.00063 27.7 0.6 57 45-106 176-234 (275)
423 1i3c_A Response regulator RCP1 25.6 1.3E+02 0.0044 18.9 5.4 38 77-117 60-98 (149)
424 3cnb_A DNA-binding response re 25.5 1.2E+02 0.0041 18.5 6.6 40 77-119 53-93 (143)
425 2yv5_A YJEQ protein; hydrolase 25.4 2.1 7.2E-05 32.7 -4.8 32 42-73 267-300 (302)
426 2a1f_A Uridylate kinase; PYRH, 25.4 1.2E+02 0.0041 21.9 5.1 33 85-117 22-54 (247)
427 1hqc_A RUVB; extended AAA-ATPa 25.0 1.8E+02 0.0063 21.0 6.1 44 77-121 89-149 (324)
428 3pdw_A Uncharacterized hydrola 24.9 1.6E+02 0.0053 20.7 5.6 40 78-118 5-46 (266)
429 3l6n_A Metallo-beta-lactamase; 24.9 61 0.0021 22.3 3.3 37 80-119 41-77 (219)
430 3iyg_H T-complex protein 1 sub 24.6 83 0.0028 25.9 4.4 48 75-122 222-288 (515)
431 1a7t_A Metallo-beta-lactamase; 24.6 74 0.0025 22.3 3.7 37 80-119 47-83 (232)
432 2qv0_A Protein MRKE; structura 24.5 1.3E+02 0.0044 18.5 5.1 39 77-119 54-92 (143)
433 2qni_A AGR_C_517P, uncharacter 24.4 86 0.0029 22.3 4.0 25 96-120 138-165 (219)
434 2jjx_A Uridylate kinase, UMP k 24.3 1.3E+02 0.0046 21.9 5.2 33 85-117 26-58 (255)
435 4a3s_A 6-phosphofructokinase; 24.1 2.2E+02 0.0075 21.9 6.6 46 68-118 175-222 (319)
436 2lpm_A Two-component response 24.1 51 0.0017 21.6 2.5 37 76-118 51-87 (123)
437 2jba_A Phosphate regulon trans 24.1 84 0.0029 18.9 3.5 40 77-119 45-86 (127)
438 1ass_A Thermosome; chaperonin, 24.1 66 0.0022 22.1 3.2 46 77-122 20-84 (159)
439 1jbe_A Chemotaxis protein CHEY 24.0 1.2E+02 0.0043 18.2 6.0 40 76-118 47-87 (128)
440 2vgn_A DOM34; translation term 23.9 1.2E+02 0.0042 23.9 5.2 60 60-122 297-358 (386)
441 1wxx_A TT1595, hypothetical pr 23.9 65 0.0022 24.9 3.5 42 78-119 279-327 (382)
442 2fhx_A SPM-1; metallo-beta-lac 23.8 1.1E+02 0.0038 21.3 4.6 35 81-118 42-76 (246)
443 1xhf_A DYE resistance, aerobic 23.8 1.2E+02 0.0042 18.0 7.2 39 76-119 45-83 (123)
444 1jeo_A MJ1247, hypothetical pr 23.7 72 0.0025 21.5 3.4 33 97-129 96-129 (180)
445 3d8h_A Glycolytic phosphoglyce 23.7 87 0.003 22.8 4.0 26 95-120 174-203 (267)
446 2r6a_A DNAB helicase, replicat 23.7 2.7E+02 0.0092 21.9 7.5 55 59-118 266-321 (454)
447 1mb3_A Cell division response 23.7 1.2E+02 0.0042 18.0 5.8 39 77-118 44-83 (124)
448 1p6q_A CHEY2; chemotaxis, sign 23.7 1.3E+02 0.0043 18.1 5.7 41 76-119 49-90 (129)
449 3c3m_A Response regulator rece 23.6 1.4E+02 0.0047 18.5 6.6 40 77-119 46-86 (138)
450 3kto_A Response regulator rece 23.6 67 0.0023 20.0 3.0 38 77-118 49-88 (136)
451 3rqi_A Response regulator prot 23.5 80 0.0027 21.0 3.6 54 58-118 34-87 (184)
452 4h3d_A 3-dehydroquinate dehydr 23.5 46 0.0016 24.9 2.4 57 58-120 91-149 (258)
453 3rtk_A 60 kDa chaperonin 2; he 23.4 32 0.0011 28.7 1.7 41 76-121 213-253 (546)
454 3rst_A Signal peptide peptidas 23.1 1.9E+02 0.0066 20.8 5.8 66 65-130 31-105 (240)
455 1sxj_A Activator 1 95 kDa subu 23.1 95 0.0033 25.1 4.5 42 77-121 147-190 (516)
456 1svm_A Large T antigen; AAA+ f 22.9 0.66 2.3E-05 37.1 -8.4 35 55-89 277-312 (377)
457 3t6k_A Response regulator rece 22.9 1.4E+02 0.0049 18.4 6.9 40 76-118 46-86 (136)
458 3mm4_A Histidine kinase homolo 22.8 1.8E+02 0.0063 19.7 7.1 38 78-118 119-159 (206)
459 2yxl_A PH0851 protein, 450AA l 22.7 32 0.0011 27.5 1.5 42 79-120 331-392 (450)
460 3p9d_H T-complex protein 1 sub 22.7 90 0.0031 26.0 4.3 45 78-122 244-307 (568)
461 1rii_A 2,3-bisphosphoglycerate 22.6 87 0.003 23.0 3.9 25 96-120 157-185 (265)
462 3j21_D 50S ribosomal protein L 22.3 38 0.0013 25.7 1.7 46 58-107 102-165 (255)
463 3sho_A Transcriptional regulat 22.3 98 0.0034 20.8 3.9 50 75-129 84-135 (187)
464 2zan_A Vacuolar protein sortin 22.2 1.1E+02 0.0038 24.2 4.6 51 72-122 221-283 (444)
465 3o8o_B 6-phosphofructokinase s 22.2 2.6E+02 0.009 24.4 7.2 55 63-118 198-254 (766)
466 3hjg_A Putative alpha-ribazole 22.2 97 0.0033 21.7 3.9 26 95-120 125-151 (213)
467 3ruv_A Chaperonin, CPN; double 22.1 57 0.0019 27.1 2.9 47 76-122 227-292 (543)
468 1vec_A ATP-dependent RNA helic 22.0 34 0.0012 23.3 1.4 42 77-118 145-186 (206)
469 3f3k_A Uncharacterized protein 21.9 81 0.0028 22.9 3.5 24 97-120 146-178 (265)
470 2i4r_A V-type ATP synthase sub 21.6 1E+02 0.0036 19.7 3.6 25 96-120 38-63 (102)
471 1zh2_A KDP operon transcriptio 21.6 1.3E+02 0.0046 17.7 4.9 38 76-118 43-80 (121)
472 3fjy_A Probable MUTT1 protein; 21.4 79 0.0027 24.2 3.5 23 99-121 276-298 (364)
473 1w5s_A Origin recognition comp 21.1 60 0.002 24.6 2.7 45 77-121 137-190 (412)
474 1ex9_A Lactonizing lipase; alp 21.0 2E+02 0.0067 20.9 5.6 50 71-120 31-83 (285)
475 1tk9_A Phosphoheptose isomeras 21.0 99 0.0034 20.8 3.7 50 75-129 107-158 (188)
476 2b9e_A NOL1/NOP2/SUN domain fa 21.0 59 0.002 24.7 2.6 15 79-93 175-189 (309)
477 2xhz_A KDSD, YRBH, arabinose 5 20.9 1.2E+02 0.004 20.3 4.0 32 98-129 111-144 (183)
478 1yfk_A Phosphoglycerate mutase 20.9 1.1E+02 0.0037 22.2 4.0 25 96-120 160-188 (262)
479 1yf3_A DNA adenine methylase; 20.6 2.4E+02 0.0083 20.6 6.0 43 78-120 164-214 (259)
480 2hig_A 6-phospho-1-fructokinas 20.6 1.3E+02 0.0045 24.9 4.8 56 60-120 270-327 (487)
481 1v37_A Phosphoglycerate mutase 20.4 78 0.0027 21.6 3.0 22 96-120 114-135 (177)
482 3ko1_A Chaperonin; 9-fold symm 20.1 67 0.0023 26.7 3.0 46 76-121 241-305 (553)
483 2as0_A Hypothetical protein PH 20.1 72 0.0025 24.7 3.0 42 78-119 289-337 (396)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.96 E-value=1e-29 Score=194.45 Aligned_cols=88 Identities=31% Similarity=0.480 Sum_probs=80.5
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcCh
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~ 120 (131)
.+++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||+..+..+++.+++++++ |.|||+||||+
T Consensus 127 ~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~ 206 (235)
T 3tif_A 127 ECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206 (235)
T ss_dssp HHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred HHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 5778889864 48999999999999999999999999999999999999999999999999999754 99999999999
Q ss_pred hHHhcCCcccC
Q psy4761 121 EEARHAHKVPI 131 (131)
Q Consensus 121 ~~~~~~dri~~ 131 (131)
+.+..||||++
T Consensus 207 ~~~~~~d~i~~ 217 (235)
T 3tif_A 207 NVARFGERIIY 217 (235)
T ss_dssp HHHTTSSEEEE
T ss_pred HHHHhCCEEEE
Confidence 97766999863
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.96 E-value=2.9e-29 Score=203.23 Aligned_cols=88 Identities=28% Similarity=0.450 Sum_probs=81.4
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.+.++. +.|.|+|+||||++
T Consensus 121 ~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 121 AMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE 200 (359)
T ss_dssp HHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 578999995 4899999999999999999999999999999999999999999999999888775 56999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 201 ea~~~aDri~v 211 (359)
T 3fvq_A 201 EALQYADRIAV 211 (359)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHHCCEEEE
Confidence 9987 999864
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.96 E-value=1.1e-29 Score=206.07 Aligned_cols=88 Identities=27% Similarity=0.499 Sum_probs=82.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
++++.+|+. ..++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++++ .|.|||+||||++
T Consensus 146 ~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 146 ELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp HHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 578999996 47999999999999999999999999999999999999999999999999999974 5999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 226 ~~~~~aDrv~v 236 (366)
T 3tui_C 226 VVKRICDCVAV 236 (366)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 4
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.96 E-value=2.1e-29 Score=191.34 Aligned_cols=87 Identities=28% Similarity=0.434 Sum_probs=81.0
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++|.|||+||||+++
T Consensus 123 ~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 123 YLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202 (224)
T ss_dssp HHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 578889995 4789999999999999999999999999999999999999999999999999997669999999999999
Q ss_pred HhcCCccc
Q psy4761 123 ARHAHKVP 130 (131)
Q Consensus 123 ~~~~dri~ 130 (131)
+..|||++
T Consensus 203 ~~~~d~v~ 210 (224)
T 2pcj_A 203 AELTHRTL 210 (224)
T ss_dssp HTTSSEEE
T ss_pred HHhCCEEE
Confidence 85599986
No 5
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=3.8e-29 Score=191.61 Aligned_cols=88 Identities=27% Similarity=0.500 Sum_probs=80.1
Q ss_pred HHHHhcC-CC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNG-LP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~-l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.++ +. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++|+|||+||||++
T Consensus 121 ~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 121 WIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL 200 (240)
T ss_dssp HHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred HHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 4667774 74 578899999999999999999999999999999999999999999999999999777999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. |||+++
T Consensus 201 ~~~~~~d~v~~ 211 (240)
T 1ji0_A 201 GALKVAHYGYV 211 (240)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9876 999863
No 6
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.96 E-value=1.8e-29 Score=205.73 Aligned_cols=88 Identities=27% Similarity=0.385 Sum_probs=82.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++ |.|+|+||||++
T Consensus 116 ~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 116 QVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (381)
T ss_dssp HHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred HHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 578999995 489999999999999999999999999999999999999999999999999999754 999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 196 ea~~~aDri~v 206 (381)
T 3rlf_A 196 EAMTLADKIVV 206 (381)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9987 999864
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.96 E-value=2.3e-29 Score=195.30 Aligned_cols=88 Identities=31% Similarity=0.476 Sum_probs=82.0
Q ss_pred HHHHhcCCC-C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++. . .++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++|.|||+||||++
T Consensus 135 ~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~ 214 (262)
T 1b0u_A 135 KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 214 (262)
T ss_dssp HHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred HHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 578889996 4 68999999999999999999999999999999999999999999999999999877999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 215 ~~~~~~d~v~~ 225 (262)
T 1b0u_A 215 FARHVSSHVIF 225 (262)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9986 999863
No 8
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.96 E-value=5e-29 Score=191.45 Aligned_cols=88 Identities=26% Similarity=0.390 Sum_probs=81.2
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+++.|+++++ .|.|||++|||++
T Consensus 109 ~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 109 EMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188 (240)
T ss_dssp HHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 578889995 47899999999999999999999999999999999999999999999999999865 4999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. |||+++
T Consensus 189 ~~~~~~d~i~~ 199 (240)
T 2onk_A 189 EAAMLADEVAV 199 (240)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9877 999863
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.95 E-value=1.1e-28 Score=192.00 Aligned_cols=89 Identities=24% Similarity=0.302 Sum_probs=81.6
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEE
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMH------SPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCI 114 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~------~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi 114 (131)
..+++.+++. ..++++.+||||||||++|||||+. +|++|||||||+|||+..+..+++.|++++++ |.|||
T Consensus 123 ~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi 202 (266)
T 4g1u_C 123 QQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVC 202 (266)
T ss_dssp HHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEE
T ss_pred HHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3578889995 4789999999999999999999999 99999999999999999999999999999754 68999
Q ss_pred EEEcChhHHhc-CCcccC
Q psy4761 115 ITTHYIEEARH-AHKVPI 131 (131)
Q Consensus 115 ~vtH~~~~~~~-~dri~~ 131 (131)
+||||++++.. ||||++
T Consensus 203 ~vtHdl~~~~~~~d~v~v 220 (266)
T 4g1u_C 203 CVLHDLNLAALYADRIML 220 (266)
T ss_dssp EECSCHHHHHHHCSEEEE
T ss_pred EEEcCHHHHHHhCCEEEE
Confidence 99999999987 999863
No 10
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.95 E-value=1.6e-28 Score=189.85 Aligned_cols=88 Identities=27% Similarity=0.305 Sum_probs=81.5
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++ |.|||++|||++
T Consensus 111 ~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 190 (253)
T 2nq2_C 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190 (253)
T ss_dssp HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH
T ss_pred HHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 578889995 478899999999999999999999999999999999999999999999999999766 999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. |||+++
T Consensus 191 ~~~~~~d~v~~ 201 (253)
T 2nq2_C 191 QVVAIANKTLL 201 (253)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9976 999863
No 11
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.95 E-value=7.9e-29 Score=199.78 Aligned_cols=88 Identities=27% Similarity=0.380 Sum_probs=81.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++.+ .|.|+|+||||++
T Consensus 110 ~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 189 (348)
T 3d31_A 110 DTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189 (348)
T ss_dssp HHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 578999995 47999999999999999999999999999999999999999999999999999864 5999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 190 ~~~~~adri~v 200 (348)
T 3d31_A 190 EARIMADRIAV 200 (348)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 12
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.95 E-value=1.1e-28 Score=199.09 Aligned_cols=88 Identities=26% Similarity=0.433 Sum_probs=81.7
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|+++.+ .|.|+|+||||++
T Consensus 123 ~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 123 EVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (353)
T ss_dssp HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 578899995 47899999999999999999999999999999999999999999999999999865 4999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 203 ~~~~~adri~v 213 (353)
T 1oxx_K 203 DIFAIADRVGV 213 (353)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.95 E-value=1.6e-28 Score=198.81 Aligned_cols=88 Identities=27% Similarity=0.403 Sum_probs=81.7
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++.+ .|.|+|+||||++
T Consensus 116 ~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 116 EIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195 (359)
T ss_dssp HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 578999995 47999999999999999999999999999999999999999999999999999875 4999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 196 ~~~~~adri~v 206 (359)
T 2yyz_A 196 EAMTMASRIAV 206 (359)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 14
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.95 E-value=3e-28 Score=190.69 Aligned_cols=88 Identities=33% Similarity=0.443 Sum_probs=82.0
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+++.|++++ ++|.|||+||||++
T Consensus 126 ~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 126 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred HHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 578899996 4789999999999999999999999999999999999999999999999999997 56999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 206 ~~~~~~drv~~ 216 (275)
T 3gfo_A 206 IVPLYCDNVFV 216 (275)
T ss_dssp SGGGGCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 15
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.95 E-value=3.8e-28 Score=187.67 Aligned_cols=88 Identities=26% Similarity=0.492 Sum_probs=81.9
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++|.|||+||||+++
T Consensus 136 ~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 215 (257)
T 1g6h_A 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI 215 (257)
T ss_dssp HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred HHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 578889995 4789999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
+.. ||||++
T Consensus 216 ~~~~~d~v~~ 225 (257)
T 1g6h_A 216 VLNYIDHLYV 225 (257)
T ss_dssp TGGGCSEEEE
T ss_pred HHHhCCEEEE
Confidence 986 999863
No 16
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.95 E-value=1.6e-28 Score=198.51 Aligned_cols=88 Identities=32% Similarity=0.472 Sum_probs=81.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++.++ |.|+|+||||++
T Consensus 128 ~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 207 (355)
T 1z47_A 128 ELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207 (355)
T ss_dssp HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred HHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 578999995 478999999999999999999999999999999999999999999999999998754 999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 208 ~a~~~adri~v 218 (355)
T 1z47_A 208 EALEVADRVLV 218 (355)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.95 E-value=2.5e-28 Score=197.81 Aligned_cols=88 Identities=31% Similarity=0.469 Sum_probs=81.8
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.+ .|.|+|+||||++
T Consensus 116 ~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (362)
T 2it1_A 116 EVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA 195 (362)
T ss_dssp HHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred HHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 578999995 47999999999999999999999999999999999999999999999999999865 4999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 196 ~a~~~adri~v 206 (362)
T 2it1_A 196 EALAMADRIAV 206 (362)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 18
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.95 E-value=9.1e-28 Score=186.81 Aligned_cols=88 Identities=27% Similarity=0.492 Sum_probs=82.0
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++|.|||+||||+++
T Consensus 142 ~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 221 (263)
T 2olj_A 142 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF 221 (263)
T ss_dssp HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 578889995 4789999999999999999999999999999999999999999999999999997679999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
+.. ||||++
T Consensus 222 ~~~~~d~v~~ 231 (263)
T 2olj_A 222 AREVGDRVLF 231 (263)
T ss_dssp HHHHCSEEEE
T ss_pred HHHhCCEEEE
Confidence 987 999863
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.95 E-value=2.1e-28 Score=198.82 Aligned_cols=88 Identities=28% Similarity=0.427 Sum_probs=81.7
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+|||||||||+|||||+.+|++|||||||+|||+..++.+.+.|+++.++ |.|+|+||||++
T Consensus 124 ~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 203 (372)
T 1v43_A 124 WAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 203 (372)
T ss_dssp HHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 578999995 478999999999999999999999999999999999999999999999999998754 999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 204 ~a~~~adri~v 214 (372)
T 1v43_A 204 EAMTMGDRIAV 214 (372)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 20
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.95 E-value=3.4e-28 Score=197.53 Aligned_cols=88 Identities=28% Similarity=0.456 Sum_probs=81.6
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
++++.+++. ..++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.+ .|.|+|+||||++
T Consensus 122 ~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 201 (372)
T 1g29_1 122 EVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201 (372)
T ss_dssp HHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred HHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 578889995 47899999999999999999999999999999999999999999999999999875 4999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 202 ~a~~~adri~v 212 (372)
T 1g29_1 202 EAMTMGDRIAV 212 (372)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 21
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.95 E-value=8.1e-28 Score=185.69 Aligned_cols=88 Identities=25% Similarity=0.360 Sum_probs=81.5
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEE
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPL-------LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~-------llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi 114 (131)
+.+++.+++. ..++++.+||||||||++|||||+.+|+ +|||||||+|||+..++.+.+.|++++++|.|||
T Consensus 108 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi 187 (249)
T 2qi9_C 108 NDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIV 187 (249)
T ss_dssp HHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 3578889995 4788999999999999999999999999 9999999999999999999999999976699999
Q ss_pred EEEcChhHHhc-CCccc
Q psy4761 115 ITTHYIEEARH-AHKVP 130 (131)
Q Consensus 115 ~vtH~~~~~~~-~dri~ 130 (131)
++|||++++.. |||++
T Consensus 188 ivtHd~~~~~~~~d~v~ 204 (249)
T 2qi9_C 188 MSSHDLNHTLRHAHRAW 204 (249)
T ss_dssp EECSCHHHHHHHCSEEE
T ss_pred EEeCCHHHHHHhCCEEE
Confidence 99999999976 99986
No 22
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=1.9e-27 Score=184.28 Aligned_cols=88 Identities=28% Similarity=0.468 Sum_probs=82.0
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|++++++|.|||++|||+++
T Consensus 129 ~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~ 208 (256)
T 1vpl_A 129 RATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLE 208 (256)
T ss_dssp HHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred HHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 578888995 4788999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
+.. |||+++
T Consensus 209 ~~~~~d~v~~ 218 (256)
T 1vpl_A 209 VEFLCDRIAL 218 (256)
T ss_dssp HTTTCSEEEE
T ss_pred HHHHCCEEEE
Confidence 988 999863
No 23
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.94 E-value=2e-28 Score=185.46 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=80.2
Q ss_pred HHHHhcCCCCCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 44 YISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 44 ~~~~~~~l~~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
.+++.+++...++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++|.|||++|||++++
T Consensus 117 ~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 117 DALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSY 196 (214)
T ss_dssp HHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTT
T ss_pred HHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 57888898522888999999999999999999999999999999999999999999999999876689999999999999
Q ss_pred hc-CCccc
Q psy4761 124 RH-AHKVP 130 (131)
Q Consensus 124 ~~-~dri~ 130 (131)
.. |||++
T Consensus 197 ~~~~d~v~ 204 (214)
T 1sgw_A 197 CDVNENLH 204 (214)
T ss_dssp SSEEEEGG
T ss_pred HHhCCEEE
Confidence 88 89886
No 24
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.94 E-value=3.2e-27 Score=183.47 Aligned_cols=89 Identities=29% Similarity=0.436 Sum_probs=82.5
Q ss_pred HHHHHhcCCC--C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 43 WYISLLNGLP--D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 43 ~~~~~~~~l~--~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
..+++.+++. . .++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++|.|||++|||
T Consensus 118 ~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd 197 (266)
T 2yz2_A 118 KKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197 (266)
T ss_dssp HHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3578899997 5 789999999999999999999999999999999999999999999999999997669999999999
Q ss_pred hhHHhc-CCcccC
Q psy4761 120 IEEARH-AHKVPI 131 (131)
Q Consensus 120 ~~~~~~-~dri~~ 131 (131)
++++.. |||+++
T Consensus 198 ~~~~~~~~d~v~~ 210 (266)
T 2yz2_A 198 IETVINHVDRVVV 210 (266)
T ss_dssp CTTTGGGCSEEEE
T ss_pred HHHHHHhCCEEEE
Confidence 999987 999863
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.94 E-value=4.5e-27 Score=184.16 Aligned_cols=88 Identities=34% Similarity=0.528 Sum_probs=81.2
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEE--EEEEcCh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTC--IITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tv--i~vtH~~ 120 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..++.+++.|++++++|.|| |+||||+
T Consensus 144 ~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~ 223 (279)
T 2ihy_A 144 QLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI 223 (279)
T ss_dssp HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG
T ss_pred HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH
Confidence 578889995 4789999999999999999999999999999999999999999999999999997558999 9999999
Q ss_pred hHHhc-CCcccC
Q psy4761 121 EEARH-AHKVPI 131 (131)
Q Consensus 121 ~~~~~-~dri~~ 131 (131)
+++.. ||||++
T Consensus 224 ~~~~~~~d~v~~ 235 (279)
T 2ihy_A 224 EEITANFSKILL 235 (279)
T ss_dssp GGCCTTCCEEEE
T ss_pred HHHHHhCCEEEE
Confidence 99876 999863
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.94 E-value=5.9e-27 Score=180.36 Aligned_cols=88 Identities=19% Similarity=0.281 Sum_probs=76.4
Q ss_pred HHHHhcCCC-C-CCCCcCC-CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 44 YISLLNGLP-D-PNSLCGQ-VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~~-LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+++.+++. . .++++.+ ||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++|.|||+||||+
T Consensus 124 ~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 203 (250)
T 2d2e_A 124 KALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203 (250)
T ss_dssp HHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS
T ss_pred HHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 577888993 3 7888998 999999999999999999999999999999999999999999999876799999999999
Q ss_pred hHHhc--CCcccC
Q psy4761 121 EEARH--AHKVPI 131 (131)
Q Consensus 121 ~~~~~--~dri~~ 131 (131)
+++.. |||+++
T Consensus 204 ~~~~~~~~d~v~~ 216 (250)
T 2d2e_A 204 RILNYIQPDKVHV 216 (250)
T ss_dssp GGGGTSCCSEEEE
T ss_pred HHHHHhcCCEEEE
Confidence 99987 499863
No 27
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.93 E-value=1.8e-26 Score=179.45 Aligned_cols=87 Identities=26% Similarity=0.295 Sum_probs=79.5
Q ss_pred HHHHhcCCC-C-CCCCcC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 44 YISLLNGLP-D-PNSLCG-QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~-~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+++.+++. . .++++. +||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++++|+|||++|||+
T Consensus 145 ~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 224 (267)
T 2zu0_C 145 EKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 224 (267)
T ss_dssp HHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG
T ss_pred HHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH
Confidence 577889995 3 678887 5999999999999999999999999999999999999999999999876699999999999
Q ss_pred hHHhc--CCccc
Q psy4761 121 EEARH--AHKVP 130 (131)
Q Consensus 121 ~~~~~--~dri~ 130 (131)
+++.. |||++
T Consensus 225 ~~~~~~~~d~v~ 236 (267)
T 2zu0_C 225 RILDYIKPDYVH 236 (267)
T ss_dssp GGGGTSCCSEEE
T ss_pred HHHHhhcCCEEE
Confidence 99976 89986
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.93 E-value=3.7e-26 Score=178.10 Aligned_cols=87 Identities=25% Similarity=0.326 Sum_probs=77.6
Q ss_pred HHHhc--CCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 45 ISLLN--GLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 45 ~~~~~--~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
+++.+ ++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|+++.+ .|+|||+||||+
T Consensus 138 ~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 138 FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp HHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH
T ss_pred HHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 44555 553 36788999999999999999999999999999999999999999999999999864 589999999999
Q ss_pred hHHhcCCcccC
Q psy4761 121 EEARHAHKVPI 131 (131)
Q Consensus 121 ~~~~~~dri~~ 131 (131)
+++..||||++
T Consensus 218 ~~~~~~d~v~~ 228 (271)
T 2ixe_A 218 SLAERAHHILF 228 (271)
T ss_dssp HHHTTCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 99988999863
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.92 E-value=1.2e-25 Score=173.10 Aligned_cols=77 Identities=29% Similarity=0.512 Sum_probs=71.4
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
.++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++. +|.|||+|||+++.+..||||++
T Consensus 139 ~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~~d~v~~ 215 (247)
T 2ff7_A 139 VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIV 215 (247)
T ss_dssp CSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTTSSEEEE
T ss_pred hhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEE
Confidence 356678999999999999999999999999999999999999999999999985 58999999999999888999863
No 30
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=2.2e-25 Score=173.40 Aligned_cols=84 Identities=18% Similarity=0.195 Sum_probs=77.5
Q ss_pred HHHHhcCCC-C-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-D-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+++. . .++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++++ |||++|||++
T Consensus 110 ~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~ 186 (263)
T 2pjz_A 110 EMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD 186 (263)
T ss_dssp HHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG
T ss_pred HHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH
Confidence 577888996 5 6889999999999999999999999999999999999999999999999998754 9999999999
Q ss_pred HHhc-CC-ccc
Q psy4761 122 EARH-AH-KVP 130 (131)
Q Consensus 122 ~~~~-~d-ri~ 130 (131)
++.. || |++
T Consensus 187 ~~~~~~d~~i~ 197 (263)
T 2pjz_A 187 MLNLYKEYKAY 197 (263)
T ss_dssp GGGGCTTSEEE
T ss_pred HHHHhcCceEE
Confidence 9876 99 875
No 31
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.92 E-value=3.6e-25 Score=186.61 Aligned_cols=89 Identities=18% Similarity=0.256 Sum_probs=83.0
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
..+++.+|+. ..++++.+|||||||||+|||||+.+|++|||||||++||+..++.+++.|+++++.|.|||+||||++
T Consensus 140 ~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 140 EEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA 219 (538)
T ss_dssp HHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3678999995 478999999999999999999999999999999999999999999999999999877999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 220 ~~~~~~dri~v 230 (538)
T 1yqt_A 220 VLDYLSDIIHV 230 (538)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.92 E-value=2.5e-25 Score=172.37 Aligned_cols=76 Identities=25% Similarity=0.404 Sum_probs=70.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
++++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|+++++ |.|||+|||+++.+..||||++
T Consensus 150 ~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~~~d~i~~ 225 (260)
T 2ghi_A 150 GNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTISSAESIIL 225 (260)
T ss_dssp SSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGSTTCSEEEE
T ss_pred cCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEE
Confidence 467889999999999999999999999999999999999999999999999864 8999999999999877999863
No 33
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.92 E-value=3e-25 Score=187.31 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=81.0
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|++++ +.|.|||+||||++
T Consensus 368 ~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~ 447 (538)
T 3ozx_A 368 EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS 447 (538)
T ss_dssp HTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 466777884 4789999999999999999999999999999999999999999999999999997 46999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 448 ~~~~~aDri~v 458 (538)
T 3ozx_A 448 IHDYIADRIIV 458 (538)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9998 999863
No 34
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.92 E-value=1.1e-25 Score=172.43 Aligned_cols=75 Identities=29% Similarity=0.479 Sum_probs=70.2
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
+++.+||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++++ +|+|||++||+++.+..||||++
T Consensus 135 ~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~v~~ 209 (243)
T 1mv5_A 135 ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYF 209 (243)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEE
T ss_pred cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHhCCEEEE
Confidence 4568999999999999999999999999999999999999999999999987 69999999999999878999863
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.92 E-value=4.6e-26 Score=186.07 Aligned_cols=88 Identities=25% Similarity=0.414 Sum_probs=78.3
Q ss_pred HHHHHhcCCC-CCCCCcCC-----------CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCC
Q psy4761 43 WYISLLNGLP-DPNSLCGQ-----------VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG 110 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~-----------LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g 110 (131)
+.+++.+++. ..++++.+ |||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++. .|
T Consensus 126 ~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~ 204 (390)
T 3gd7_A 126 WKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-AD 204 (390)
T ss_dssp HHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TT
T ss_pred HHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CC
Confidence 3577888885 46778877 99999999999999999999999999999999999999999998864 57
Q ss_pred cEEEEEEcChhHHhcCCcccC
Q psy4761 111 VTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 111 ~tvi~vtH~~~~~~~~dri~~ 131 (131)
.|+|++|||++.+..||||++
T Consensus 205 ~tvi~vtHd~e~~~~aDri~v 225 (390)
T 3gd7_A 205 CTVILCEARIEAMLECDQFLV 225 (390)
T ss_dssp SCEEEECSSSGGGTTCSEEEE
T ss_pred CEEEEEEcCHHHHHhCCEEEE
Confidence 999999999987777999863
No 36
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.92 E-value=7e-25 Score=187.35 Aligned_cols=88 Identities=18% Similarity=0.264 Sum_probs=82.4
Q ss_pred HHHHHhcCCCC-CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 43 WYISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 43 ~~~~~~~~l~~-~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|++++++|.|||+||||++
T Consensus 210 ~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~ 289 (607)
T 3bk7_A 210 EEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA 289 (607)
T ss_dssp HHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 46889999964 78999999999999999999999999999999999999999999999999999877999999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||||+
T Consensus 290 ~~~~~adri~ 299 (607)
T 3bk7_A 290 VLDYLSDVIH 299 (607)
T ss_dssp HHHHHCSEEE
T ss_pred HHHhhCCEEE
Confidence 9987 99986
No 37
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8e-25 Score=187.08 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=81.4
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++. +.|.|||+||||++
T Consensus 450 ~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~ 529 (608)
T 3j16_B 450 DVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529 (608)
T ss_dssp HTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred HHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 467888885 4789999999999999999999999999999999999999999999999999986 56999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 530 ~~~~~aDrviv 540 (608)
T 3j16_B 530 MATYLADKVIV 540 (608)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9988 999863
No 38
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.91 E-value=1.3e-24 Score=172.46 Aligned_cols=77 Identities=26% Similarity=0.432 Sum_probs=71.7
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
.++.+.+||||||||++|||||+.+|++|||||||+|||+.....+.+.|+++.+ ++|+|+|||+++.+..||||++
T Consensus 184 ~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~aD~i~v 260 (306)
T 3nh6_A 184 VGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLSTVVNADQILV 260 (306)
T ss_dssp ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHHHHTCSEEEE
T ss_pred hcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHHHHcCCEEEE
Confidence 4567789999999999999999999999999999999999999999999999864 7899999999999999999863
No 39
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.91 E-value=6.6e-25 Score=167.86 Aligned_cols=77 Identities=19% Similarity=0.353 Sum_probs=69.8
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLR---TLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~---~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.++++.+||||||||++|||||+.+|+++||||||+|||+..+..+++.+. ++ .+|.|||++||+++.+..|||++
T Consensus 121 ~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~~~~~~~~d~v~ 199 (237)
T 2cbz_A 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHSMSYLPQVDVII 199 (237)
T ss_dssp ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSCSTTGGGSSEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecChHHHHhCCEEE
Confidence 467899999999999999999999999999999999999999999999995 33 35899999999999987799986
Q ss_pred C
Q psy4761 131 I 131 (131)
Q Consensus 131 ~ 131 (131)
+
T Consensus 200 ~ 200 (237)
T 2cbz_A 200 V 200 (237)
T ss_dssp E
T ss_pred E
Confidence 3
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.91 E-value=8.2e-25 Score=185.21 Aligned_cols=76 Identities=26% Similarity=0.427 Sum_probs=70.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
++...+||||||||++||||++.+|+++||||||+|||+...+.+.+.++++.+ |+|+|++||+++.+..||||++
T Consensus 475 ~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~ 550 (582)
T 3b5x_A 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLSTIEQADEILV 550 (582)
T ss_pred cCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHhCCEEEE
Confidence 456789999999999999999999999999999999999999999999999864 8999999999999988999863
No 41
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.91 E-value=2e-24 Score=182.35 Aligned_cols=88 Identities=20% Similarity=0.203 Sum_probs=81.7
Q ss_pred HHHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 43 WYISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 43 ~~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
..+++.+++. ..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++++ |.|||+||||++
T Consensus 120 ~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~ 198 (538)
T 3ozx_A 120 DEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI 198 (538)
T ss_dssp HHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH
T ss_pred HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH
Confidence 4678889995 47899999999999999999999999999999999999999999999999999976 899999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 199 ~~~~~~d~i~v 209 (538)
T 3ozx_A 199 VLDYLTDLIHI 209 (538)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHhhCCEEEE
Confidence 9988 999863
No 42
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.9e-24 Score=184.84 Aligned_cols=88 Identities=20% Similarity=0.185 Sum_probs=82.6
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++. ..++++.+||||||||++|||||+.+|++|||||||+|||+..+..+.+.|++++++|.|||+||||+++
T Consensus 204 ~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~ 283 (608)
T 3j16_B 204 RYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSV 283 (608)
T ss_dssp HHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHH
T ss_pred HHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 578889996 4789999999999999999999999999999999999999999999999999998789999999999999
Q ss_pred Hhc-CCcccC
Q psy4761 123 ARH-AHKVPI 131 (131)
Q Consensus 123 ~~~-~dri~~ 131 (131)
+.. ||||++
T Consensus 284 ~~~~~drv~v 293 (608)
T 3j16_B 284 LDYLSDFVCI 293 (608)
T ss_dssp HHHHCSEEEE
T ss_pred HHHhCCEEEE
Confidence 988 999863
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.91 E-value=9.4e-25 Score=166.14 Aligned_cols=76 Identities=32% Similarity=0.377 Sum_probs=68.1
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHL-RTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l-~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
++++.+||||||||++|||||+.+|+++||||||+|||+..++.+++.+ .++. +|.|||++||+++++..|||+++
T Consensus 125 ~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~~d~v~~ 201 (229)
T 2pze_A 125 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILI 201 (229)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHCSEEEE
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHhCCEEEE
Confidence 4567899999999999999999999999999999999999999999864 5554 48999999999999877999863
No 44
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.91 E-value=2.1e-24 Score=185.14 Aligned_cols=86 Identities=27% Similarity=0.349 Sum_probs=80.1
Q ss_pred HHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 45 ISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSPL--LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 45 ~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p~--llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
+++.+|+.. .++++.+|||||||||+|||||+.+|+ +|||||||+|||+..+..+.+.|++++++|.|||+||||+
T Consensus 185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 467788853 689999999999999999999999998 9999999999999999999999999987899999999999
Q ss_pred hHHhcCCccc
Q psy4761 121 EEARHAHKVP 130 (131)
Q Consensus 121 ~~~~~~dri~ 130 (131)
+++..||||+
T Consensus 265 ~~~~~~d~ii 274 (670)
T 3ux8_A 265 DTMLAADYLI 274 (670)
T ss_dssp HHHHHCSEEE
T ss_pred HHHhhCCEEE
Confidence 9988899986
No 45
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.91 E-value=2.3e-24 Score=155.00 Aligned_cols=77 Identities=25% Similarity=0.228 Sum_probs=69.8
Q ss_pred CCCCcCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCC
Q psy4761 54 PNSLCGQVSGGQQRRISVA------VTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAH 127 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~ia------ral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~d 127 (131)
.++++.+||||||||++|| ||++.+|+++||||||+|||+..+..+.+.+.++.++|.|||++||+++....||
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d 130 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 130 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCC
Confidence 4678999999999999876 8999999999999999999999999999999998767899999999996544599
Q ss_pred ccc
Q psy4761 128 KVP 130 (131)
Q Consensus 128 ri~ 130 (131)
+++
T Consensus 131 ~ii 133 (148)
T 1f2t_B 131 HVI 133 (148)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.91 E-value=1.6e-24 Score=182.68 Aligned_cols=87 Identities=21% Similarity=0.281 Sum_probs=80.1
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++ +.|.|||+||||++
T Consensus 384 ~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~ 463 (538)
T 1yqt_A 384 ELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 463 (538)
T ss_dssp HTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred HHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 466777884 4789999999999999999999999999999999999999999999999999986 45999999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||||+
T Consensus 464 ~~~~~~drv~ 473 (538)
T 1yqt_A 464 MIDYVSDRLM 473 (538)
T ss_dssp HHHHHCSEEE
T ss_pred HHHHhCCEEE
Confidence 9987 99986
No 47
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.90 E-value=1.8e-24 Score=183.52 Aligned_cols=75 Identities=29% Similarity=0.459 Sum_probs=70.1
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
++.+.+||||||||++||||++.+|+++||||||+|||+.+.+.+.+.++++.+ |+|+|++||+++.+..||||+
T Consensus 478 ~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~ 552 (595)
T 2yl4_A 478 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIKNANMVA 552 (595)
T ss_dssp SSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHHHSSEEE
T ss_pred cCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHcCCEEE
Confidence 344589999999999999999999999999999999999999999999999865 899999999999998899986
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.90 E-value=4.6e-24 Score=182.30 Aligned_cols=88 Identities=20% Similarity=0.280 Sum_probs=81.3
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
.+++.+++. ..++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++. +.|.|||+||||++
T Consensus 454 ~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~ 533 (607)
T 3bk7_A 454 ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 533 (607)
T ss_dssp HTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 467888885 4789999999999999999999999999999999999999999999999999986 56999999999999
Q ss_pred HHhc-CCcccC
Q psy4761 122 EARH-AHKVPI 131 (131)
Q Consensus 122 ~~~~-~dri~~ 131 (131)
++.. ||||++
T Consensus 534 ~~~~~adrv~v 544 (607)
T 3bk7_A 534 MIDYVSDRLIV 544 (607)
T ss_dssp HHHHHCSEEEE
T ss_pred HHHHhCCEEEE
Confidence 9987 999863
No 49
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.90 E-value=6.6e-24 Score=182.06 Aligned_cols=88 Identities=25% Similarity=0.307 Sum_probs=79.1
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSP---LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p---~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
..+..+++.. .++++.+|||||||||+|||||+.+| ++|||||||+|||+..+..+.+.|++++++|.|||+|||
T Consensus 525 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtH 604 (670)
T 3ux8_A 525 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH 604 (670)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3456677742 58899999999999999999999887 599999999999999999999999999878999999999
Q ss_pred ChhHHhcCCcccC
Q psy4761 119 YIEEARHAHKVPI 131 (131)
Q Consensus 119 ~~~~~~~~dri~~ 131 (131)
|++++..||||++
T Consensus 605 d~~~~~~~d~i~~ 617 (670)
T 3ux8_A 605 NLDVIKTADYIID 617 (670)
T ss_dssp CHHHHTTCSEEEE
T ss_pred CHHHHHhCCEEEE
Confidence 9999888999863
No 50
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=2.5e-24 Score=182.96 Aligned_cols=74 Identities=26% Similarity=0.419 Sum_probs=69.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
...+||||||||++||||++.+|+++||||||++||+.....+.+.++++. +|+|+|+|||+++.+..||||++
T Consensus 488 ~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~ 561 (598)
T 3qf4_B 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKNADLIIV 561 (598)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHHCSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEE
Confidence 447999999999999999999999999999999999999999999999985 58999999999999999999863
No 51
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.90 E-value=4.3e-24 Score=180.78 Aligned_cols=76 Identities=34% Similarity=0.477 Sum_probs=70.2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.++...+||||||||++||||++.+|+++||||||+|||+.+.+.+.+.++++. +|+|+|++||+++.+..||||+
T Consensus 471 ~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~ 546 (578)
T 4a82_A 471 VGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITHADKIV 546 (578)
T ss_dssp CCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTTCSEEE
T ss_pred hccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEE
Confidence 345667999999999999999999999999999999999999999999998875 4789999999999998899986
No 52
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.89 E-value=1.1e-23 Score=165.94 Aligned_cols=76 Identities=32% Similarity=0.377 Sum_probs=65.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHL-RTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l-~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
++++.+||||||||++|||||+.+|+++||||||+|||+..+..+++.+ +++. +|+|||++||+++.+..|||+++
T Consensus 154 ~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~ 230 (290)
T 2bbs_A 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILI 230 (290)
T ss_dssp ----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEE
T ss_pred cCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEE
Confidence 3456899999999999999999999999999999999999999999864 4554 48999999999999877999863
No 53
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.89 E-value=2.8e-23 Score=167.47 Aligned_cols=76 Identities=21% Similarity=0.213 Sum_probs=71.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMM------HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHK 128 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~------~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dr 128 (131)
++++.+||||||||++||+||+ .+|++|||||||+|||+..+..+.+.|+++++.|.|||+||||++.+..|||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 5788999999999999999999 7999999999999999999999999999998789999999999999777999
Q ss_pred cc
Q psy4761 129 VP 130 (131)
Q Consensus 129 i~ 130 (131)
++
T Consensus 354 ~~ 355 (365)
T 3qf7_A 354 KL 355 (365)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 54
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.88 E-value=4.7e-23 Score=174.45 Aligned_cols=76 Identities=28% Similarity=0.395 Sum_probs=71.2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.++.+.+||||||||++||||++++|+++||||||+|||+...+.+.+.++++.+ |+|+|++||+++.+..||||+
T Consensus 474 ~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~ 549 (582)
T 3b60_A 474 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQADEIV 549 (582)
T ss_dssp CCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTTCSEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHhCCEEE
Confidence 4566789999999999999999999999999999999999999999999999865 899999999999998899986
No 55
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=6.5e-23 Score=174.04 Aligned_cols=77 Identities=32% Similarity=0.494 Sum_probs=71.9
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
.++++.+||||||||++||||++++|+++||||||++||+...+.+.+.++++. +|+|+|+|||+++.+..||||++
T Consensus 473 ~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~v 549 (587)
T 3qf4_A 473 VERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTALLADKILV 549 (587)
T ss_dssp ECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHTTSSEEEE
T ss_pred hcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHHhCCEEEE
Confidence 467788999999999999999999999999999999999999999999999874 58999999999999988999863
No 56
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=5.9e-23 Score=182.05 Aligned_cols=87 Identities=28% Similarity=0.345 Sum_probs=79.6
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSP---LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p---~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+|+.. .++++.+|||||||||+|||||+.+| ++|||||||+|||+...+.+.+.|++++++|.|||+|||
T Consensus 787 ~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~H 866 (916)
T 3pih_A 787 QVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEH 866 (916)
T ss_dssp HHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4567778853 57899999999999999999999875 799999999999999999999999999888999999999
Q ss_pred ChhHHhcCCccc
Q psy4761 119 YIEEARHAHKVP 130 (131)
Q Consensus 119 ~~~~~~~~dri~ 130 (131)
|++++..||||+
T Consensus 867 dL~~i~~ADrIi 878 (916)
T 3pih_A 867 NLDVIKNADHII 878 (916)
T ss_dssp CHHHHTTCSEEE
T ss_pred CHHHHHhCCEEE
Confidence 999998899986
No 57
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=2.5e-22 Score=178.01 Aligned_cols=87 Identities=29% Similarity=0.400 Sum_probs=80.0
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSPL--LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p~--llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
..+..+|+.. .++++.+||||||||++|||||+.+|+ +|||||||+|||+...+.+++.|+++++.|.|||+||||
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd 525 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD 525 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3456688853 589999999999999999999999887 999999999999999999999999998889999999999
Q ss_pred hhHHhcCCccc
Q psy4761 120 IEEARHAHKVP 130 (131)
Q Consensus 120 ~~~~~~~dri~ 130 (131)
++++..||||+
T Consensus 526 ~~~~~~aD~ii 536 (916)
T 3pih_A 526 EEVIRNADHII 536 (916)
T ss_dssp HHHHHTCSEEE
T ss_pred HHHHHhCCEEE
Confidence 99998899986
No 58
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.87 E-value=2.9e-22 Score=176.40 Aligned_cols=87 Identities=28% Similarity=0.346 Sum_probs=80.5
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHS---PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~---p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++.. .++++.+|||||||||+||++|+.+ |++|||||||+|||+..++.+.+.|+++++.|.|||+|||
T Consensus 712 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisH 791 (842)
T 2vf7_A 712 DTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEH 791 (842)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 4678888864 5889999999999999999999996 7999999999999999999999999999888999999999
Q ss_pred ChhHHhcCCccc
Q psy4761 119 YIEEARHAHKVP 130 (131)
Q Consensus 119 ~~~~~~~~dri~ 130 (131)
|++++..||||+
T Consensus 792 dl~~i~~aDrii 803 (842)
T 2vf7_A 792 KMQVVAASDWVL 803 (842)
T ss_dssp CHHHHTTCSEEE
T ss_pred CHHHHHhCCEEE
Confidence 999996699986
No 59
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.86 E-value=5e-22 Score=176.49 Aligned_cols=87 Identities=25% Similarity=0.325 Sum_probs=80.2
Q ss_pred HHHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSP---LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p---~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++.. .++++.+|||||||||+||++|+.+| ++|||||||+|||+..+..+++.|++++++|.|||+|||
T Consensus 827 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisH 906 (972)
T 2r6f_A 827 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH 906 (972)
T ss_dssp HHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 4678888853 68899999999999999999999865 999999999999999999999999999888999999999
Q ss_pred ChhHHhcCCccc
Q psy4761 119 YIEEARHAHKVP 130 (131)
Q Consensus 119 ~~~~~~~~dri~ 130 (131)
|++++..||||+
T Consensus 907 dl~~i~~aDrIi 918 (972)
T 2r6f_A 907 NLDVIKTADYII 918 (972)
T ss_dssp CHHHHTTCSEEE
T ss_pred CHHHHHhCCEEE
Confidence 999987799986
No 60
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.86 E-value=9.8e-22 Score=175.01 Aligned_cols=87 Identities=23% Similarity=0.310 Sum_probs=79.8
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSP---LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p---~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+++.+++. ..++++.+|||||||||+||++|+.+| ++|||||||+|||+..+..+.+.|+++++.|.|||+|||
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisH 924 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEH 924 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 467778885 368899999999999999999999865 999999999999999999999999999888999999999
Q ss_pred ChhHHhcCCccc
Q psy4761 119 YIEEARHAHKVP 130 (131)
Q Consensus 119 ~~~~~~~~dri~ 130 (131)
|++++..||||+
T Consensus 925 dl~~i~~aDrIi 936 (993)
T 2ygr_A 925 NLDVIKTSDWII 936 (993)
T ss_dssp CHHHHTTCSEEE
T ss_pred CHHHHHhCCEEE
Confidence 999987799986
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.85 E-value=6e-22 Score=176.47 Aligned_cols=84 Identities=23% Similarity=0.254 Sum_probs=78.1
Q ss_pred HHHHhcCCC--CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 44 YISLLNGLP--DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 44 ~~~~~~~l~--~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++.+|+. ..++++++||||||||++|||||+.+|++|||||||+|||+..++.+.+.|++ .|.|||+||||++
T Consensus 530 ~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~ 606 (986)
T 2iw3_A 530 DKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV 606 (986)
T ss_dssp HHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH
T ss_pred HHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH
Confidence 578889994 36889999999999999999999999999999999999999999999999987 5899999999999
Q ss_pred HHhc-CCccc
Q psy4761 122 EARH-AHKVP 130 (131)
Q Consensus 122 ~~~~-~dri~ 130 (131)
++.. ||||+
T Consensus 607 ~l~~~adrii 616 (986)
T 2iw3_A 607 FLDNVCEYII 616 (986)
T ss_dssp HHHHHCSEEE
T ss_pred HHHHhCCEEE
Confidence 9987 99986
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.85 E-value=1.5e-21 Score=173.48 Aligned_cols=86 Identities=27% Similarity=0.361 Sum_probs=80.4
Q ss_pred HHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 45 ISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSP--LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 45 ~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p--~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+..+|+.. .++++.+|||||+||++||++|..+| ++|||||||+|||+...+.+++.|+++++.|.|||+||||+
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 467889963 68999999999999999999999985 99999999999999999999999999988899999999999
Q ss_pred hHHhcCCccc
Q psy4761 121 EEARHAHKVP 130 (131)
Q Consensus 121 ~~~~~~dri~ 130 (131)
+++..||||+
T Consensus 567 ~~i~~ADrIi 576 (972)
T 2r6f_A 567 DTMLAADYLI 576 (972)
T ss_dssp HHHHSCSEEE
T ss_pred HHHHhCCEEE
Confidence 9998899986
No 63
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.85 E-value=3.3e-22 Score=182.33 Aligned_cols=75 Identities=31% Similarity=0.535 Sum_probs=68.9
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
....+||||||||++|||||+++|+|||||||||+||+++.+.+.+.|++.. +|+|+|+|+|.++.+.+||||++
T Consensus 1213 e~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi~~aD~I~V 1287 (1321)
T 4f4c_A 1213 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTVMNADCIAV 1287 (1321)
T ss_dssp TTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTTTTCSEEEE
T ss_pred CCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHHhCCEEEE
Confidence 3456899999999999999999999999999999999999999999998764 58999999999999999999963
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.85 E-value=2.8e-21 Score=172.07 Aligned_cols=86 Identities=28% Similarity=0.378 Sum_probs=80.0
Q ss_pred HHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 45 ISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHS--PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 45 ~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~--p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+..+|+.+ .++++.+|||||+||++||++|..+ |++|||||||+|||+...+.+++.|+++++.|.|||+||||+
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH
Confidence 467788863 6899999999999999999999999 599999999999999999999999999998899999999999
Q ss_pred hHHhcCCccc
Q psy4761 121 EEARHAHKVP 130 (131)
Q Consensus 121 ~~~~~~dri~ 130 (131)
+++..||||+
T Consensus 584 ~~i~~ADrIi 593 (993)
T 2ygr_A 584 DTIEHADWIV 593 (993)
T ss_dssp HHHHTCSEEE
T ss_pred HHHHhCCEEE
Confidence 9998899986
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.85 E-value=1e-21 Score=174.93 Aligned_cols=85 Identities=28% Similarity=0.324 Sum_probs=76.3
Q ss_pred HHHHhcCCCC---CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 44 YISLLNGLPD---PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 44 ~~~~~~~l~~---~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+++.+|+.. .++++++||||||||++|||||+.+|++|||||||+|||+.+...+.+.|+++ |.|||+||||+
T Consensus 882 ~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~ 958 (986)
T 2iw3_A 882 EHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSA 958 (986)
T ss_dssp HHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCH
T ss_pred HHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCH
Confidence 5678889952 47889999999999999999999999999999999999999999998888764 57999999999
Q ss_pred hHHhc-CCcccC
Q psy4761 121 EEARH-AHKVPI 131 (131)
Q Consensus 121 ~~~~~-~dri~~ 131 (131)
+++.. ||||++
T Consensus 959 e~v~~l~DrViv 970 (986)
T 2iw3_A 959 EFTKNLTEEVWA 970 (986)
T ss_dssp HHHTTTCCEEEC
T ss_pred HHHHHhCCEEEE
Confidence 99987 999864
No 66
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.84 E-value=4.8e-21 Score=168.68 Aligned_cols=86 Identities=24% Similarity=0.395 Sum_probs=80.0
Q ss_pred HHHhcCCCC--CCCCcCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 45 ISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSP--LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 45 ~~~~~~l~~--~~~~~~~LS~G~~qrl~iaral~~~p--~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+..+|+.+ .++++.+|||||||||+||++|..+| +++||||||+|||+...+.+++.++++++.|.|||+||||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 467788864 68999999999999999999999999 59999999999999999999999999988899999999999
Q ss_pred hHHhcCCccc
Q psy4761 121 EEARHAHKVP 130 (131)
Q Consensus 121 ~~~~~~dri~ 130 (131)
+++..||||+
T Consensus 442 ~~l~~aD~ii 451 (842)
T 2vf7_A 442 DVIRRADWLV 451 (842)
T ss_dssp HHHTTCSEEE
T ss_pred HHHHhCCEEE
Confidence 9888899986
No 67
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.84 E-value=5.4e-21 Score=154.16 Aligned_cols=74 Identities=23% Similarity=0.320 Sum_probs=67.9
Q ss_pred CCcCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 56 SLCGQ-VSGGQQRRISVAVTMMHSP--LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 56 ~~~~~-LS~G~~qrl~iaral~~~p--~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
+++.. ||||||||++||++|+.+| ++|||||||+|||+..+..+.+.|+++. +|.|||+|||+++.+..|||++
T Consensus 290 ~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~~d~i~ 366 (415)
T 4aby_A 290 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHHHY 366 (415)
T ss_dssp CBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSEEE
T ss_pred cchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhhcCeEE
Confidence 34444 5999999999999999999 9999999999999999999999999997 6899999999998887799986
No 68
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.83 E-value=4.7e-21 Score=174.40 Aligned_cols=76 Identities=30% Similarity=0.528 Sum_probs=69.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
.....+||||||||++|||||+.+|++|||||||+|||+.+.+.+.+.+++. .+|+|||+|||+++++..||||++
T Consensus 1166 ge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~i~~~dri~v 1241 (1284)
T 3g5u_A 1166 GDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLSTIQNADLIVV 1241 (1284)
T ss_dssp STTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTGGGSCSEEEE
T ss_pred CCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHHHHcCCEEEE
Confidence 3456789999999999999999999999999999999999999999999885 458999999999999988999863
No 69
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.83 E-value=8e-21 Score=151.20 Aligned_cols=77 Identities=25% Similarity=0.247 Sum_probs=69.1
Q ss_pred CCCCcCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCC
Q psy4761 54 PNSLCGQVSGGQQR------RISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAH 127 (131)
Q Consensus 54 ~~~~~~~LS~G~~q------rl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~d 127 (131)
.++++.+||||||| |+++|++++.+|++|||||||+|||+..+..+.+.|+++.+.|.|||+||||.+....||
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d 321 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 321 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCC
Confidence 35688999999999 677888888999999999999999999999999999998777889999999977655699
Q ss_pred ccc
Q psy4761 128 KVP 130 (131)
Q Consensus 128 ri~ 130 (131)
+++
T Consensus 322 ~~~ 324 (339)
T 3qkt_A 322 HVI 324 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 70
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.83 E-value=2.7e-21 Score=176.37 Aligned_cols=76 Identities=33% Similarity=0.480 Sum_probs=69.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
.....+||||||||++||||++.+|+++|||||||+||+.+.+.+.+.|.++. +|+|+|+|||++..+..||+|++
T Consensus 549 Ge~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i~~aD~Iiv 624 (1321)
T 4f4c_A 549 GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTIRNADLIIS 624 (1321)
T ss_dssp SSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTTTTCSEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHHHhCCEEEE
Confidence 44566899999999999999999999999999999999999999999998875 58999999999999999999863
No 71
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.82 E-value=1.7e-20 Score=170.80 Aligned_cols=76 Identities=30% Similarity=0.481 Sum_probs=70.4
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
......+||||||||++||||++.+|++|||||||++||+.+.+.+.+.++++. +|+|+|+|||+++.+..||||+
T Consensus 520 ~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~~d~i~ 595 (1284)
T 3g5u_A 520 VGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRNADVIA 595 (1284)
T ss_dssp CSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTTCSEEE
T ss_pred ccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEE
Confidence 456678999999999999999999999999999999999999999999998764 5899999999999999999986
No 72
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.82 E-value=1.2e-20 Score=157.66 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=71.6
Q ss_pred CCCCcCCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 54 PNSLCGQV-SGGQQRRISVAVTMMHSP--LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 54 ~~~~~~~L-S~G~~qrl~iaral~~~p--~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
..+++.+| ||||+||++||+|++.+| ++|||||||+|||+..+..+.+.|+++++ |.|||+|||+++.+..|||++
T Consensus 390 ~~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~~~d~~~ 468 (517)
T 4ad8_A 390 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAARAHHHY 468 (517)
T ss_dssp CCCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHHHSSEEE
T ss_pred CcccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhCCEEE
Confidence 45778898 999999999999999999 99999999999999999999999999987 899999999999988899986
No 73
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.82 E-value=6e-20 Score=135.02 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=67.9
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMH----SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKV 129 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~----~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri 129 (131)
..+++..||||||||++||++++. +|+++||||||+|||+.....+.+.|+++.+ +.++|++||+......||++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~~~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVMMANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHHHTTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHHHHhCCEE
Confidence 456789999999999999999974 4699999999999999999999999998864 46899999999888779998
Q ss_pred c
Q psy4761 130 P 130 (131)
Q Consensus 130 ~ 130 (131)
+
T Consensus 137 ~ 137 (173)
T 3kta_B 137 I 137 (173)
T ss_dssp E
T ss_pred E
Confidence 5
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.80 E-value=1.1e-19 Score=143.55 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=67.6
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcc
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMM----HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKV 129 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~----~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri 129 (131)
.+.++.+||+|||||++||+||+ .+|+++||||||++||+...+.+.+.++++. +|.|||++||+.+....||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKIVMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTTGGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHHhhCceE
Confidence 46678899999999999999997 5789999999999999999999999999984 588999999998766669975
No 75
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.78 E-value=2.1e-20 Score=135.51 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=64.8
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPL----------------ISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~----------------~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
....|+|+|||++||||++.+|++++|||||++||+. ....+.+.+++++++|.|+|++|||++
T Consensus 81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 3456999999999999999999999999999999999 558889998888766999999999999
Q ss_pred HHhcCCcc
Q psy4761 122 EARHAHKV 129 (131)
Q Consensus 122 ~~~~~dri 129 (131)
++..++++
T Consensus 161 ~~~~~~~~ 168 (171)
T 4gp7_A 161 EVEEVVFE 168 (171)
T ss_dssp HHHHEEEE
T ss_pred Hhhhhhhc
Confidence 99887654
No 76
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.74 E-value=6.7e-18 Score=137.83 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=68.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMM----HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~----~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
.+++..|||||||+++||++|+ .+|+++||||||++||+..+..+.+.|+++.+.|.++|++||+......||+++
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~ 407 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALV 407 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEE
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEE
Confidence 4567789999999999999999 589999999999999999999999999998656889999999988777799875
No 77
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.71 E-value=4.5e-18 Score=124.81 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=63.0
Q ss_pred CCCCcCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhhhCCcEEEEEE---cChhHH
Q psy4761 54 PNSLCGQVSGGQQRRISVAVT-----MMHSPLLLILDE--PTAGLDPLISDTIWQHLRTLSATGVTCIITT---HYIEEA 123 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iara-----l~~~p~llilDE--Pt~gLD~~~~~~i~~~l~~~~~~g~tvi~vt---H~~~~~ 123 (131)
.++++.+||||||||++||+| ++.+|+++|||| ||+++|+...+.+.+.+.+ .+.|+|++| |+.+++
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~ 146 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLV 146 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHH
Confidence 467788999999999999996 999999999999 9999999999888888765 467788888 488888
Q ss_pred hc-CCc
Q psy4761 124 RH-AHK 128 (131)
Q Consensus 124 ~~-~dr 128 (131)
.. |||
T Consensus 147 ~~i~~r 152 (178)
T 1ye8_A 147 KEIRRL 152 (178)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 77 776
No 78
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.71 E-value=1.9e-17 Score=133.07 Aligned_cols=74 Identities=27% Similarity=0.283 Sum_probs=64.6
Q ss_pred CCcCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCc
Q psy4761 56 SLCGQVSGGQQRRI------SVAVTMMHS-PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHK 128 (131)
Q Consensus 56 ~~~~~LS~G~~qrl------~iaral~~~-p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dr 128 (131)
.++..|||||+||+ ++|++++.+ |+++||||||+|||+..+..+.+.|.++. .+.+||+|||+++....||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRELEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGGGGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHHHHhhCCE
Confidence 56789999999988 567899999 99999999999999999999999999874 34689999999975555998
Q ss_pred cc
Q psy4761 129 VP 130 (131)
Q Consensus 129 i~ 130 (131)
++
T Consensus 355 ~~ 356 (371)
T 3auy_A 355 II 356 (371)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 79
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.64 E-value=8.3e-17 Score=130.03 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=62.1
Q ss_pred CCCcC-CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 55 NSLCG-QVSGGQQRRISVAVTMM---------HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 55 ~~~~~-~LS~G~~qrl~iaral~---------~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
++++. .||+|||||++||++|+ .+|++|||||||++||+..+..+++.+.++. .|+|++||. +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 56777 89999999999999999 8999999999999999999999999998863 799999994 44
Q ss_pred cCCccc
Q psy4761 125 HAHKVP 130 (131)
Q Consensus 125 ~~dri~ 130 (131)
.||++.
T Consensus 333 ~~~~i~ 338 (359)
T 2o5v_A 333 GAALTL 338 (359)
T ss_dssp TCSEEE
T ss_pred cCCEEE
Confidence 677764
No 80
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.7e-17 Score=137.82 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=65.3
Q ss_pred HHHHhcCCCCCCCCcCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhhhCCcEEEEE
Q psy4761 44 YISLLNGLPDPNSLCGQVSGGQQRRISVAVT--MMHSPLL----LILDE-PTAGLDPLISDTIWQHLRTLSATGVTCIIT 116 (131)
Q Consensus 44 ~~~~~~~l~~~~~~~~~LS~G~~qrl~iara--l~~~p~l----lilDE-Pt~gLD~~~~~~i~~~l~~~~~~g~tvi~v 116 (131)
.+++.+|+..... +.+||||||||+++||| |+.+|++ ||||| ||++||+. .+.+.+++++ .|.|+|+|
T Consensus 220 ~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiV 294 (460)
T 2npi_A 220 PMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLV 294 (460)
T ss_dssp CEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEE
T ss_pred HHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEE
Confidence 3567778854222 88999999999999999 9999999 99999 99999998 5555555544 37899999
Q ss_pred EcChh------HHhc-CCc
Q psy4761 117 THYIE------EARH-AHK 128 (131)
Q Consensus 117 tH~~~------~~~~-~dr 128 (131)
||+.+ ++.. |||
T Consensus 295 th~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 295 LCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp ECCSSCTHHHHHHHHHHHH
T ss_pred EccCchhhhHHHHHHhccc
Confidence 99987 6655 888
No 81
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.56 E-value=5.5e-17 Score=121.92 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 64 GQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 64 G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
|||||++|||||+.+|++|||||||+| .+..+.+.|+++ ++|.||| +|||++++..
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC------
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC
Confidence 999999999999999999999999999 788899999888 6689999 9999988765
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.54 E-value=2.3e-15 Score=125.85 Aligned_cols=77 Identities=8% Similarity=-0.040 Sum_probs=70.7
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHhhhCCcEEEEEEcCh-------
Q psy4761 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPL-----ISDTIWQHLRTLSATGVTCIITTHYI------- 120 (131)
Q Consensus 53 ~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~-----~~~~i~~~l~~~~~~g~tvi~vtH~~------- 120 (131)
..+.++.+||+||+||+.+|+++..+|+++|+| ||+|||.. .++.+.++++.+++.|.|||++||+.
T Consensus 346 ~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~ 424 (525)
T 1tf7_A 346 IVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424 (525)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCS
T ss_pred EEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCccc
Confidence 356778999999999999999999999999999 99999999 89999999999888899999999999
Q ss_pred ---hHHhc-CCccc
Q psy4761 121 ---EEARH-AHKVP 130 (131)
Q Consensus 121 ---~~~~~-~dri~ 130 (131)
+.+.. ||+|+
T Consensus 425 ~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 425 ITDSHISTITDTII 438 (525)
T ss_dssp SCSSCCTTTCSEEE
T ss_pred ccCcccceeeeEEE
Confidence 67766 89875
No 83
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.41 E-value=2.4e-15 Score=123.58 Aligned_cols=86 Identities=9% Similarity=0.004 Sum_probs=71.0
Q ss_pred HHHHHhcCCCCCCCCcCCCCHH--HHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh---
Q psy4761 43 WYISLLNGLPDPNSLCGQVSGG--QQRRISVAVTMMH----------SPLLLILDEPTAGLDPLISDTIWQHLRTLS--- 107 (131)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~LS~G--~~qrl~iaral~~----------~p~llilDEPt~gLD~~~~~~i~~~l~~~~--- 107 (131)
..+++.+++...+..+. ||+| |+||++||+|++. +|+++++||||+|||+..++.+.+.++++.
T Consensus 138 ~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~ 216 (413)
T 1tq4_A 138 DTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT 216 (413)
T ss_dssp HHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 35778888754344444 9999 9999999999999 999999999999999999999999999874
Q ss_pred --hC----CcEEEEEEcChhH--Hhc-CCcc
Q psy4761 108 --AT----GVTCIITTHYIEE--ARH-AHKV 129 (131)
Q Consensus 108 --~~----g~tvi~vtH~~~~--~~~-~dri 129 (131)
+. ..+|+++||+++. ++. ||+|
T Consensus 217 l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 217 FRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 32 2678899999886 665 7665
No 84
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.39 E-value=3.9e-13 Score=119.48 Aligned_cols=82 Identities=16% Similarity=0.052 Sum_probs=63.4
Q ss_pred HHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhhh-CCcEEEEEEcChhH
Q psy4761 46 SLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIW-QHLRTLSA-TGVTCIITTHYIEE 122 (131)
Q Consensus 46 ~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~-~~l~~~~~-~g~tvi~vtH~~~~ 122 (131)
+..+++. ...+..+++|+||+|++.++++ +.+|+++||||||+|+|+.....+. .+++.+.+ .|.|+|++||+++.
T Consensus 720 ~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el 798 (918)
T 3thx_B 720 FTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPV 798 (918)
T ss_dssp EEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred HHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHH
Confidence 3445553 3566788999999999999999 8999999999999999999998887 67777764 59999999999988
Q ss_pred HhcCCc
Q psy4761 123 ARHAHK 128 (131)
Q Consensus 123 ~~~~dr 128 (131)
+..||+
T Consensus 799 ~~l~~~ 804 (918)
T 3thx_B 799 CELEKN 804 (918)
T ss_dssp GGHHHH
T ss_pred HHHHhh
Confidence 765654
No 85
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.37 E-value=1.4e-12 Score=116.14 Aligned_cols=76 Identities=22% Similarity=0.329 Sum_probs=60.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhh-CCcEEEEEEcChhHHhcCCccc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTM--MHSPLLLILDEPTAGLDPLISDTI-WQHLRTLSA-TGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral--~~~p~llilDEPt~gLD~~~~~~i-~~~l~~~~~-~g~tvi~vtH~~~~~~~~dri~ 130 (131)
+.....+|+|++++..+++++ +.+|+++||||||+|+|+.....+ +.+++.+.+ .|.|+|++||+.+....||++.
T Consensus 716 d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~ 795 (934)
T 3thx_A 716 DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIP 795 (934)
T ss_dssp -------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCT
T ss_pred hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccc
Confidence 345567899999999999988 899999999999999999988887 666777765 4999999999988887788864
No 86
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.29 E-value=4.5e-12 Score=113.70 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=62.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHhhhC-CcEEEEEEcChhHHhc-CCccc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLIS-DTIWQHLRTLSAT-GVTCIITTHYIEEARH-AHKVP 130 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~-~~i~~~l~~~~~~-g~tvi~vtH~~~~~~~-~dri~ 130 (131)
....+++|+|+++ +++|++++.+|+++|||||++|+|+... ..++.+++.+.++ |.++|++||+++++.. ||++.
T Consensus 846 ~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~ 923 (1022)
T 2o8b_B 846 MSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVA 923 (1022)
T ss_dssp ----CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSS
T ss_pred hhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcce
Confidence 3456678888776 9999999999999999999999999885 4578889888766 9999999999999987 88764
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.23 E-value=1.5e-11 Score=95.00 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=49.4
Q ss_pred CcCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 57 LCGQVSGGQ-QRRISVAVTMMHSPLLLILDEPTA---G---LDP-LISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 57 ~~~~LS~G~-~qrl~iaral~~~p~llilDEPt~---g---LD~-~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
.+.++|.++ +|++. ++++..+|+++|+||||+ + +|. .....+.+.|+++++ .|+|||++||+.
T Consensus 126 ~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 126 SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 346788988 66666 999999999999999999 5 455 666788999999874 499999999995
No 88
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.18 E-value=2.4e-13 Score=100.47 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=58.1
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC----CHHHHHHHHHHHHHhh-hCCcEEEEEEcChhHHhc-CC
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGL----DPLISDTIWQHLRTLS-ATGVTCIITTHYIEEARH-AH 127 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gL----D~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~~~~~-~d 127 (131)
.++++..|| +|+.+|++++|||||+|+ |+..++.+.+.+++++ +.|.|+|+||||++++.. ||
T Consensus 128 ~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d 196 (207)
T 1znw_A 128 KKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELV 196 (207)
T ss_dssp HHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHH
T ss_pred HHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHH
Confidence 345566666 899999999999999998 7889999999999987 458999999999999987 99
Q ss_pred cccC
Q psy4761 128 KVPI 131 (131)
Q Consensus 128 ri~~ 131 (131)
||++
T Consensus 197 ~i~~ 200 (207)
T 1znw_A 197 SLLV 200 (207)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9874
No 89
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.17 E-value=3.8e-11 Score=92.27 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=58.5
Q ss_pred HHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH---HHHHHHHHHHhh-hCCcEEEEEE
Q psy4761 45 ISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTA--GLDPLI---SDTIWQHLRTLS-ATGVTCIITT 117 (131)
Q Consensus 45 ~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~--gLD~~~---~~~i~~~l~~~~-~~g~tvi~vt 117 (131)
+++.+.+. ..++++..||+|++|++ ++++.+|+++|+||||+ ++|+.. ...+.+.|+++. +.|+|||++|
T Consensus 102 ~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~ 178 (279)
T 1nlf_A 102 VADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLH 178 (279)
T ss_dssp HHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred ccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 34566664 35778999999997765 68889999999999999 999743 477888888886 4599999999
Q ss_pred cChhHH
Q psy4761 118 HYIEEA 123 (131)
Q Consensus 118 H~~~~~ 123 (131)
|+....
T Consensus 179 H~~~~~ 184 (279)
T 1nlf_A 179 HASKGA 184 (279)
T ss_dssp EC----
T ss_pred cCCCcc
Confidence 998765
No 90
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.16 E-value=5.2e-11 Score=87.29 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHhh-hCCcEEEEEEcCh--------hHHhc-
Q psy4761 60 QVSGGQQRRISVAVTMMHSPL--LLILDEPTAGL--DPLISDTIWQHLRTLS-ATGVTCIITTHYI--------EEARH- 125 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~~p~--llilDEPt~gL--D~~~~~~i~~~l~~~~-~~g~tvi~vtH~~--------~~~~~- 125 (131)
..|.++.++...+.+...+|+ ++++||||+++ |+.....+.+.+++++ +.|.|||++||+. ..+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 458999988888888888999 99999999877 9988899999999986 5699999999999 44666
Q ss_pred CCccc
Q psy4761 126 AHKVP 130 (131)
Q Consensus 126 ~dri~ 130 (131)
||+|+
T Consensus 183 ~d~vi 187 (235)
T 2w0m_A 183 ADGII 187 (235)
T ss_dssp CSEEE
T ss_pred eeEEE
Confidence 99875
No 91
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.16 E-value=9.2e-12 Score=99.04 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 63 GGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 63 ~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
|||+||++|++||..+|+++++||||+. .+.+.++.+...+.|+|+++|+.+....|||++
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~ 285 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLA 285 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHH
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhhe
Confidence 8999999999999999999999999982 355677776544458999999999656689875
No 92
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.15 E-value=1.6e-11 Score=91.33 Aligned_cols=71 Identities=18% Similarity=0.103 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHhhhCCcEEEEEEcChhHH---------hc-
Q psy4761 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLD-----PLISDTIWQHLRTLSATGVTCIITTHYIEEA---------RH- 125 (131)
Q Consensus 61 LS~G~~qrl~iaral~~~p~llilDEPt~gLD-----~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~---------~~- 125 (131)
.+.++.........-..+|+++++||||+++| +..++.+.++++.+++.|+|||++||+++++ ..
T Consensus 118 ~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 118 FNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEF 197 (251)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGG
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhE
Confidence 34455544444444568999999999999997 6666779999998887799999999999998 44
Q ss_pred C-CcccC
Q psy4761 126 A-HKVPI 131 (131)
Q Consensus 126 ~-dri~~ 131 (131)
| |+|++
T Consensus 198 ~aD~vi~ 204 (251)
T 2ehv_A 198 IARGVIV 204 (251)
T ss_dssp GCSEEEE
T ss_pred eeeEEEE
Confidence 7 98863
No 93
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.05 E-value=2.1e-10 Score=100.40 Aligned_cols=68 Identities=25% Similarity=0.281 Sum_probs=55.3
Q ss_pred CCcCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHhhhCCcEEEEEEcChhHHhcC
Q psy4761 56 SLCGQVSGGQQRRISVAVTM--MHSPLLLILDEP---TAGLDPLIS-DTIWQHLRTLSATGVTCIITTHYIEEARHA 126 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral--~~~p~llilDEP---t~gLD~~~~-~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~ 126 (131)
.....+|+|+++++.+++++ +.+|+++||||| |+++|+.+. ..+.+.+.+ .|.|+|++||+.++...|
T Consensus 631 ~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 631 DLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTALG 704 (765)
T ss_dssp ----CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHTCC
T ss_pred HHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhh
Confidence 34457899999999999999 999999999999 999998775 457777665 588999999999887544
No 94
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.97 E-value=7.1e-12 Score=97.22 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=51.3
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
.+..+.+||||||||+++|||++. ++++|||+.|||+.. .+.++++.+. .+||++.|..+.+
T Consensus 92 ~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 92 EKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGGGS
T ss_pred HhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEeccccC
Confidence 456678999999999999999886 999999999999987 4555666555 8999999887644
No 95
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.96 E-value=4.9e-10 Score=98.43 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=55.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhh-CCcEEEEEEcChhHHhcCCcc
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTI-WQHLRTLSA-TGVTCIITTHYIEEARHAHKV 129 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i-~~~l~~~~~-~g~tvi~vtH~~~~~~~~dri 129 (131)
...+.+|+|+++. +.+...+.+|+++|||||++|+|+.....+ ..+++.+.+ .|.++|++||+.+.+..||++
T Consensus 665 ~~~stf~~e~~~~-~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~ 739 (800)
T 1wb9_A 665 SGRSTFMVEMTET-ANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 (800)
T ss_dssp -----CHHHHHHH-HHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHS
T ss_pred hhhhhhhHHHHHH-HHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhh
Confidence 3456778777654 444456899999999999999999877775 778888876 499999999999877667764
No 96
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.92 E-value=9.3e-11 Score=92.33 Aligned_cols=64 Identities=27% Similarity=0.347 Sum_probs=51.2
Q ss_pred HHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEc
Q psy4761 45 ISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPL--LLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTH 118 (131)
Q Consensus 45 ~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~--llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH 118 (131)
+++.+|+. ..++++.+|| |||++||||++.+|+ +|+|| ||+|+|+... ++++. +.|.|+|++||
T Consensus 188 lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiTh 255 (302)
T 3b9q_A 188 LCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTK 255 (302)
T ss_dssp EECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEEC
T ss_pred HHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeC
Confidence 34555553 3456778899 999999999999999 99999 9999998754 24454 45899999999
No 97
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.89 E-value=2.2e-09 Score=78.38 Aligned_cols=64 Identities=17% Similarity=0.037 Sum_probs=48.9
Q ss_pred cCCCCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCCCCHH--------HHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 58 CGQVSGGQ--QRRISVAVTMMHS-PLLLILDEPTAGLDPL--------ISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 58 ~~~LS~G~--~qrl~iaral~~~-p~llilDEPt~gLD~~--------~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
+.++|+++ +++++.+++++.+ |+++|+||||+++|+. ....+.+.|+++.+ .|.|||+++|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 82 LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 34555554 5688888999986 9999999999999973 23445666777754 4899999999875
No 98
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.86 E-value=5.3e-12 Score=94.45 Aligned_cols=71 Identities=11% Similarity=0.075 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHH-----HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-------CCcEEEEEEcChhHHhc-
Q psy4761 59 GQVSGGQQRRISV-----AVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-------TGVTCIITTHYIEEARH- 125 (131)
Q Consensus 59 ~~LS~G~~qrl~i-----aral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-------~g~tvi~vtH~~~~~~~- 125 (131)
.+|||||+||+++ +++++.+|++++|||||+++|......+.+.+.++.+ .+.+.|+++|+++++..
T Consensus 121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~ 200 (218)
T 1z6g_A 121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQ 200 (218)
T ss_dssp ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHH
T ss_pred ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHH
Confidence 5789999999999 8999999999999999999999888888887776532 46788999999998865
Q ss_pred CCcc
Q psy4761 126 AHKV 129 (131)
Q Consensus 126 ~dri 129 (131)
++++
T Consensus 201 ~~~i 204 (218)
T 1z6g_A 201 LKNY 204 (218)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 99
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.83 E-value=4.4e-10 Score=90.68 Aligned_cols=64 Identities=27% Similarity=0.347 Sum_probs=51.1
Q ss_pred HHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEc
Q psy4761 45 ISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPL--LLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTH 118 (131)
Q Consensus 45 ~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~--llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH 118 (131)
+++.+|+. ..++++.+|| +||++||||++.+|+ +|+|| ||+|+|+... ++++. +.|.|+|++||
T Consensus 245 lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~------~~~~~~~~g~t~iiiTh 312 (359)
T 2og2_A 245 LCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTK 312 (359)
T ss_dssp EEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEES
T ss_pred HHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH------HHHHHHhcCCeEEEEec
Confidence 34555553 2456678899 999999999999999 99999 9999998754 23444 35899999999
No 100
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.82 E-value=4.3e-09 Score=81.08 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=45.9
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 68 RISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 68 rl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
+++|++||..+|+++++|||| |+.....+ ++. ...|.+|+++||+.+....|||++
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~-~~~g~~vl~t~H~~~~~~~~dri~ 143 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AETGHLVFGTLHTNTAIDTIHRIV 143 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHH-HHTTCEEEEEECCSSHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHH-HccCCEEEEEeCcchHHHHHHHHh
Confidence 899999999999999999999 88776543 333 356999999999988655588764
No 101
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.79 E-value=2.6e-09 Score=78.36 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=48.5
Q ss_pred CCCHHHHH-HHHHHHHHhh-------CCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHhh-hCCcEEEEEEc
Q psy4761 60 QVSGGQQR-RISVAVTMMH-------SPLLLILDEPTAGLDPL-------I-----SDTIWQHLRTLS-ATGVTCIITTH 118 (131)
Q Consensus 60 ~LS~G~~q-rl~iaral~~-------~p~llilDEPt~gLD~~-------~-----~~~i~~~l~~~~-~~g~tvi~vtH 118 (131)
..+.++++ .+..+++++. +|+++++||||+++|+. . ...+.+.+.++. +.|.|||++||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH 178 (231)
T 4a74_A 99 AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 178 (231)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEee
Confidence 44555444 3666666666 99999999999999983 1 236777777775 45999999999
Q ss_pred ChhH----Hhc-CCccc
Q psy4761 119 YIEE----ARH-AHKVP 130 (131)
Q Consensus 119 ~~~~----~~~-~dri~ 130 (131)
..+. +.+ ||+++
T Consensus 179 ~~~~~g~~~~~~~d~~l 195 (231)
T 4a74_A 179 VQANGGHILAHSATLRV 195 (231)
T ss_dssp CC---------CCSEEE
T ss_pred cccCcchhhHhhceEEE
Confidence 6554 666 78764
No 102
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.69 E-value=2.3e-08 Score=83.43 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=53.9
Q ss_pred HHHHHHHHHh-hCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH---------hc-CCccc
Q psy4761 67 RRISVAVTMM-HSPLLLILDEPTA-----GLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA---------RH-AHKVP 130 (131)
Q Consensus 67 qrl~iaral~-~~p~llilDEPt~-----gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~---------~~-~dri~ 130 (131)
+.-.+..+|. .+|+++++||||+ ++|+..++.++++++++++.|+|||++||+++++ +. ||+|+
T Consensus 126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi 205 (525)
T 1tf7_A 126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV 205 (525)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEE
Confidence 3445555664 6899999999997 4699999999999999987799999999999984 55 99986
Q ss_pred C
Q psy4761 131 I 131 (131)
Q Consensus 131 ~ 131 (131)
+
T Consensus 206 ~ 206 (525)
T 1tf7_A 206 I 206 (525)
T ss_dssp E
T ss_pred E
Confidence 3
No 103
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.69 E-value=1.4e-08 Score=81.70 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=44.8
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 70 SVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 70 ~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
+|++||..+|++|++|||| |... .+.+.++.+.|.||++++|+.+.+..|||++
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~~~~~dRli 241 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTSAAKTIDRVV 241 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSSHHHHHHHHH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccChHHHHHHHHh
Confidence 9999999999999999999 6544 3344445567999999999999887788874
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.62 E-value=2.9e-08 Score=79.25 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHHH------------HHHHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 62 SGGQQRRISVAVTMM-------HSPLLLILDEPTAGLDPLI------------SDTIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 62 S~G~~qrl~iaral~-------~~p~llilDEPt~gLD~~~------------~~~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
|.+++|++.++++++ .+|+++|+||||+++|+.. ...+...|.++. +.|+|||+++|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 688999999999999 6899999999999999852 345666666665 45999999999876
Q ss_pred HHh
Q psy4761 122 EAR 124 (131)
Q Consensus 122 ~~~ 124 (131)
...
T Consensus 288 ~~~ 290 (349)
T 1pzn_A 288 RPD 290 (349)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 105
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.60 E-value=2.9e-10 Score=89.84 Aligned_cols=70 Identities=14% Similarity=-0.012 Sum_probs=51.8
Q ss_pred HHHhcCCCCCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChhHH
Q psy4761 45 ISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIEEA 123 (131)
Q Consensus 45 ~~~~~~l~~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~~~ 123 (131)
+++.++-...+.++..|||||+||+++|+|++.+|++||+|||+..+|+.. ..+.+. + .+|+++|+.+..
T Consensus 161 ~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D-~~I~V~a~~~~~ 231 (312)
T 3aez_A 161 FVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFD-FSLYVDARIEDI 231 (312)
T ss_dssp HHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCS-EEEEEEECHHHH
T ss_pred HHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcC-cEEEEECCHHHH
Confidence 455555323456788999999999999999999999999999999998521 122222 3 357788888664
No 106
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.51 E-value=3.8e-08 Score=71.18 Aligned_cols=67 Identities=10% Similarity=0.025 Sum_probs=54.5
Q ss_pred HHhcCCCC--CCCCcCCCCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcE
Q psy4761 46 SLLNGLPD--PNSLCGQVSGGQQRR-ISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112 (131)
Q Consensus 46 ~~~~~l~~--~~~~~~~LS~G~~qr-l~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~t 112 (131)
+...+++. ...++..+|+||+|+ +..+++++.+|+++++|||||++|......+++.|.++..+|.|
T Consensus 133 ~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 133 AVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 34556653 356788999999999 89999999999999999999999999999999999988755544
No 107
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.48 E-value=3.3e-10 Score=89.67 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=45.2
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcc
Q psy4761 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKV 129 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri 129 (131)
+.+|||||||| |||++.+|+||| |++||+.....+.. +||+++.+..||||
T Consensus 198 g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~~~~~aD~i 248 (305)
T 2v9p_A 198 GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQTFRFEQPC 248 (305)
T ss_dssp TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEEEEECCCCC
T ss_pred ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHHHHHhCCEE
Confidence 77999999999 999999999999 99999988887752 18998887779987
No 108
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.44 E-value=2.5e-09 Score=83.76 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=48.6
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTA-GLDPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~-gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
++++.++|||+|||+.+|||++ ++++||||+ |||+... +.++++.+. +.++|+++||+.
T Consensus 108 ~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 108 ERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 3677899999999999998885 999999998 5999763 556666543 889999999984
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.41 E-value=1.2e-08 Score=75.14 Aligned_cols=62 Identities=15% Similarity=0.091 Sum_probs=44.4
Q ss_pred CCCcCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhhhCCcEEEE----EEcCh
Q psy4761 55 NSLCGQVSGGQQRRI-SVAV---TMMHSPLLLILDE--PTAGLDPLISDTIWQHLRTLSATGVTCII----TTHYI 120 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl-~iar---al~~~p~llilDE--Pt~gLD~~~~~~i~~~l~~~~~~g~tvi~----vtH~~ 120 (131)
.++...+|+|||+++ ++.+ |++.+|+++|+|| |+..+|+...+.+.+++. ...++|+ +||+.
T Consensus 78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~~~~~ilgti~vsh~~ 149 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----TPGTIILGTIPVPKGK 149 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----CSSCCEEEECCCCCSS
T ss_pred ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----CCCcEEEEEeecCCCC
Confidence 445667999999888 4444 6899999999999 899899876555555443 3444443 44975
No 110
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.38 E-value=9.6e-07 Score=62.98 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=41.9
Q ss_pred HHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 74 TMMHSPLLLILDEPTA-GLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 74 al~~~p~llilDEPt~-gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
..+.+|++|++|||++ ++|+.....+.+++.+..++|+++|++||...
T Consensus 96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 3456999999999985 99999999999999888778899999999764
No 111
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.38 E-value=1.9e-08 Score=80.60 Aligned_cols=64 Identities=14% Similarity=0.260 Sum_probs=54.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh--CCc-----EEEEEEcChhHHhcCCc
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA--TGV-----TCIITTHYIEEARHAHK 128 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~--~g~-----tvi~vtH~~~~~~~~dr 128 (131)
..+.+||+|| |++++| +.+|++ |+|+|+.....+.++++++.+ .|. ||+++|||++ ..-||+
T Consensus 167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~ 235 (347)
T 2obl_A 167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDE 235 (347)
T ss_dssp ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHH
T ss_pred hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-Chhhhh
Confidence 4688999999 899999 688887 999999999999999999864 587 9999999998 223776
Q ss_pred cc
Q psy4761 129 VP 130 (131)
Q Consensus 129 i~ 130 (131)
+.
T Consensus 236 v~ 237 (347)
T 2obl_A 236 VR 237 (347)
T ss_dssp HH
T ss_pred eE
Confidence 53
No 112
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.25 E-value=7e-08 Score=79.48 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=52.2
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh---C-Cc-----EEEEEEcChhHHhcCCc
Q psy4761 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA---T-GV-----TCIITTHYIEEARHAHK 128 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~---~-g~-----tvi~vtH~~~~~~~~dr 128 (131)
+..||+|| ||++|| +.+|++ |+|||+.....+.+++.++.+ + |. ||+++|||++ ..-||+
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~ 324 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADS 324 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHH
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhce
Confidence 67899999 999999 888988 999999999999999999865 3 74 9999999997 333665
Q ss_pred c
Q psy4761 129 V 129 (131)
Q Consensus 129 i 129 (131)
+
T Consensus 325 v 325 (438)
T 2dpy_A 325 A 325 (438)
T ss_dssp H
T ss_pred E
Confidence 5
No 113
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.17 E-value=2.2e-10 Score=83.89 Aligned_cols=76 Identities=7% Similarity=-0.058 Sum_probs=62.9
Q ss_pred HHHhcCCC-CCCCCcCCCCHHHH----HHHHHHHHHhhCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHh-hhCCc
Q psy4761 45 ISLLNGLP-DPNSLCGQVSGGQQ----RRISVAVTMMHSPLLLILDEPTAG-------LDPLISDTIWQHLRTL-SATGV 111 (131)
Q Consensus 45 ~~~~~~l~-~~~~~~~~LS~G~~----qrl~iaral~~~p~llilDEPt~g-------LD~~~~~~i~~~l~~~-~~~g~ 111 (131)
.++.+++. ..+.++.++|+|++ ||++++++++.+|.++++||||++ ||+.....+.+.+.+. .+.|.
T Consensus 73 ~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~ 152 (211)
T 3asz_A 73 HAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGR 152 (211)
T ss_dssp HHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCC
Confidence 44555553 35567889999974 688999999999999999999999 9999888899988875 46689
Q ss_pred EEEEEEcCh
Q psy4761 112 TCIITTHYI 120 (131)
Q Consensus 112 tvi~vtH~~ 120 (131)
|++.++|+.
T Consensus 153 t~~~~~~~~ 161 (211)
T 3asz_A 153 SLEGVVAQY 161 (211)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999999975
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.11 E-value=3.1e-06 Score=59.66 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=37.8
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcE-EEEEEcC
Q psy4761 74 TMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT-CIITTHY 119 (131)
Q Consensus 74 al~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~t-vi~vtH~ 119 (131)
+++.+|++|++|||++ ++....+.+++++.++.++|++ +|++||.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 4577999999999998 6665688899999988777887 8888884
No 115
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.08 E-value=5.3e-06 Score=61.02 Aligned_cols=64 Identities=25% Similarity=0.270 Sum_probs=37.8
Q ss_pred CCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHhhh-CCcEEEEEEcChhHH
Q psy4761 60 QVSGGQQRR-ISVAVTMM--HSPLLLILDEPTAGLDPL-------I-----SDTIWQHLRTLSA-TGVTCIITTHYIEEA 123 (131)
Q Consensus 60 ~LS~G~~qr-l~iaral~--~~p~llilDEPt~gLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~vtH~~~~~ 123 (131)
..+..+... +.-+..++ .+|+++++|||++.+|+. . ...+...+.++++ .|+|||+++|.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence 455555433 33333443 589999999999999975 2 3345555666553 499999999976543
No 116
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.02 E-value=1.6e-07 Score=70.68 Aligned_cols=60 Identities=7% Similarity=-0.015 Sum_probs=47.6
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 53 ~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
..+.++..||+||+||+++ ++++.+|+++|+|||....+.. +.++ .+.+|+++||+...+
T Consensus 109 ~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~~~~i~v~th~~~~~ 168 (245)
T 2jeo_A 109 GKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--FHLRLFVDTDSDVRL 168 (245)
T ss_dssp TCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--CSEEEEEECCHHHHH
T ss_pred CCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--cCeEEEEECCHHHHH
Confidence 3566788999999999988 6888999999999999888753 2222 378999999974433
No 117
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.98 E-value=7.5e-06 Score=63.71 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=38.3
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 75 MMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 75 l~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+..+|+++|+|||++ ||+.....+.+.+.+.. .+.++|++||+.+.
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP 176 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHH
Confidence 467899999999999 99999999999998864 47899999999753
No 118
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.88 E-value=1e-05 Score=65.05 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=42.5
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 68 RISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 68 rl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
+.+|+++|..+|+++++|||+ |+.... ..++. ...|.+|+.++|+.+....+||++
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~-~~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRA-AETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHH-HTTTCEEEECCCCCSHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHH-HhcCCEEEEEECcchHHHHHHHHH
Confidence 469999999999999999999 765533 34443 356899999999977444477763
No 119
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.86 E-value=2.4e-06 Score=67.13 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChhH
Q psy4761 60 QVSGGQQRRISVAVTMMHSPL--LLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIEE 122 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~~p~--llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~~ 122 (131)
.++...+||++||||++.+|+ ++.|| |+++ ..+.+.++++.+ .|.|+|++||+.+.
T Consensus 202 ~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~------~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 202 LMEELKKVKRAIAKADPEEPKEVWLVLD-AVTG------QNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC------THHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH------HHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 345566899999999999999 55566 5555 345555666654 38999999998543
No 120
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.85 E-value=1.7e-06 Score=70.98 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 60 QVSGGQQRRISVAVTMMHSPL---LLILDEPT-AGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~~p~---llilDEPt-~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.++.+++|+++|+|+++.+|+ ++++|||| .|+|+... ++++++.. +.+||+|.|..+.
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTTS
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcccC
Confidence 356778888999999999999 99999999 69999773 44455543 7888888887654
No 121
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.82 E-value=7.5e-06 Score=69.72 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=40.8
Q ss_pred hhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHhh-h-CCcEEEEEEcChhHH
Q psy4761 76 MHSPLLLILDEP------TAGLDPLISDTIWQHLRTLS-A-TGVTCIITTHYIEEA 123 (131)
Q Consensus 76 ~~~p~llilDEP------t~gLD~~~~~~i~~~l~~~~-~-~g~tvi~vtH~~~~~ 123 (131)
...|+++++||| |+|||+..+..+.++++++. + .+.+++++||+++.+
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 457999999999 99999999999999999974 3 378899999998754
No 122
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.71 E-value=3.8e-06 Score=66.80 Aligned_cols=62 Identities=11% Similarity=-0.139 Sum_probs=47.4
Q ss_pred cCCCCHHHHHHHHHHHHHh-hCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcC
Q psy4761 58 CGQVSGGQQRRISVAVTMM-HSPLLLILDE---PT------AGLDPLISDTIWQHLRTLS-ATGVTCIITTHY 119 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~-~~p~llilDE---Pt------~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~ 119 (131)
+..+|+|++|+..+++++. .+|++++||| |+ .++|+..+..+.+.+.++. +.|.+|++++|.
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 256 AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 4456778888888888875 6999999999 65 5899999999999998875 448999999985
No 123
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.70 E-value=2.6e-07 Score=69.40 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=39.5
Q ss_pred CCCcCCCCHHHHHHHHHHHHH-hhCCCEEEEe----CCCCCCCHHHHHHHHHHHHHhh
Q psy4761 55 NSLCGQVSGGQQRRISVAVTM-MHSPLLLILD----EPTAGLDPLISDTIWQHLRTLS 107 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral-~~~p~llilD----EPt~gLD~~~~~~i~~~l~~~~ 107 (131)
++++..||| |+ +|+ +.+|+++++| |||+|+|+...+.+.+.++++.
T Consensus 147 ~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 147 RRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 567788998 55 777 9999999999 9999999998888888887764
No 124
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.64 E-value=1.4e-07 Score=67.73 Aligned_cols=65 Identities=9% Similarity=0.067 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC-hhHHhc-CCccc
Q psy4761 62 SGGQQRRISVAV------TMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY-IEEARH-AHKVP 130 (131)
Q Consensus 62 S~G~~qrl~iar------al~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~-~~~~~~-~dri~ 130 (131)
|+|++|++.++. +++.+|+...+|+ ++|+..... ++.+.++.+.+.++|.+||. +++++. ||+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh
Confidence 777777777777 8888888888884 899988888 88888876667899999999 888887 88763
No 125
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.62 E-value=4.3e-06 Score=65.58 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
++|+||+||+..+++++.+|+++ ||| +.+.+.++++. .+.||+++||+..
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 79999999999889999999987 998 67778887764 5899999999643
No 126
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.54 E-value=1.8e-05 Score=64.74 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=46.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hhhCCcEEEEEEc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRT-LSATGVTCIITTH 118 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~-~~~~g~tvi~vtH 118 (131)
+.++.+||+|++|+++++++|+.+|.++++ +++|.... ...+.+.+ +.+.|.+++++|.
T Consensus 247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 567889999999999999999999999999 99998766 44444444 3455777776664
No 127
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.52 E-value=0.00018 Score=58.86 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC--------HHHHHHHHHHHHHhhh-CCcEEEEEEc
Q psy4761 59 GQVSGGQQRRISVAVTMM--HSPLLLILDEPTAGLD--------PLISDTIWQHLRTLSA-TGVTCIITTH 118 (131)
Q Consensus 59 ~~LS~G~~qrl~iaral~--~~p~llilDEPt~gLD--------~~~~~~i~~~l~~~~~-~g~tvi~vtH 118 (131)
..+|.++.+ +.++.+. ++|+++++|+++...+ ......+...|+.+++ .|++||+++|
T Consensus 294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 478998876 5666666 6899999999988763 2344567777777764 4999999999
No 128
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.51 E-value=0.00016 Score=52.93 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=33.7
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHh-hhCCcEEEEEEcChhH
Q psy4761 77 HSPLLLILDEPTAGL--DPLISDTIWQHLRTL-SATGVTCIITTHYIEE 122 (131)
Q Consensus 77 ~~p~llilDEPt~gL--D~~~~~~i~~~l~~~-~~~g~tvi~vtH~~~~ 122 (131)
.+|+++++|+|++.+ |+.....+...+.++ ++.|.||++++|....
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 689999999999887 554445555555554 4679999999998765
No 129
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.42 E-value=6.3e-05 Score=65.71 Aligned_cols=71 Identities=15% Similarity=0.096 Sum_probs=56.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhhCCcEEEEE-EcChhHHhc
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTA-GLDPLISDTIWQHLRTLSATGVTCIIT-THYIEEARH 125 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~-gLD~~~~~~i~~~l~~~~~~g~tvi~v-tH~~~~~~~ 125 (131)
+..+.-+|.|+.++..++++++.+++++|+|||.. ++|......+++.+.+......+|+++ ||+.+.+..
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 34566789999999999999999999999999996 999877666666665554456677775 998876654
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.32 E-value=0.00024 Score=57.81 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=33.6
Q ss_pred hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 77 HSPLLLILDEPTAGLDPLIS------------DTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~------------~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
.+|+++++|||++.+|.... ..+...|+++++ .|.|||+++|..
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 57999999999999986432 557777888764 499999999983
No 131
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.25 E-value=0.00042 Score=51.64 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=38.4
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 72 AVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 72 aral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
+..++..++++||| ||+..+..+.+.+. +|.||+++||+++++..
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKIELDR 145 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHHHHHH
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHHHHHH
Confidence 45566779999999 99999999988775 58999999999998764
No 132
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.21 E-value=4.8e-06 Score=64.93 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=32.2
Q ss_pred CCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy4761 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPL 94 (131)
Q Consensus 56 ~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~ 94 (131)
.+...+||||+||+.+|++...+|+|+|+||||+++|+.
T Consensus 130 ~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 130 KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred cCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 345689999999999873333399999999999999984
No 133
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.01 E-value=0.0014 Score=52.16 Aligned_cols=56 Identities=21% Similarity=0.333 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhC--CCEEEEeCCCCCCC----------H---HHHHHHHHHHHHh----hhCCcEEEEEEcChh
Q psy4761 66 QRRISVAVTMMHS--PLLLILDEPTAGLD----------P---LISDTIWQHLRTL----SATGVTCIITTHYIE 121 (131)
Q Consensus 66 ~qrl~iaral~~~--p~llilDEPt~gLD----------~---~~~~~i~~~l~~~----~~~g~tvi~vtH~~~ 121 (131)
.+.+.++++++.+ |+++++|||++.+. + ...+.+.+.++++ ++.|+|||+++|...
T Consensus 125 e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 3456788888754 99999999999883 2 1222445555554 355999999999654
No 134
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.97 E-value=0.0015 Score=54.25 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHhh----hCCcEEEEEEcChhHH
Q psy4761 63 GGQQRRISVAVTMMHSPLLLILDEP----------TAGLDPLISDTIWQHLRTLS----ATGVTCIITTHYIEEA 123 (131)
Q Consensus 63 ~G~~qrl~iaral~~~p~llilDEP----------t~gLD~~~~~~i~~~l~~~~----~~g~tvi~vtH~~~~~ 123 (131)
+++++|-.+.+|....|.+|++||+ +.|.|....+.+.+++..+. ..+..||.+||..+.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 6788889999999999999999999 34667666666666666552 3478899999998654
No 135
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.93 E-value=6e-05 Score=53.58 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=42.1
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
+.++..+|+|++|++.++|++.++|+++ +|+...+.+++.+..+...+..+ +.|++
T Consensus 104 ~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~-i~t~~ 159 (191)
T 1zp6_A 104 ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHV-LPVSG 159 (191)
T ss_dssp CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGE-EECTT
T ss_pred CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccE-EECCC
Confidence 3456789999999999999999999876 58888888888776664333334 44543
No 136
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.81 E-value=0.0037 Score=52.07 Aligned_cols=61 Identities=21% Similarity=0.337 Sum_probs=47.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHh--h---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEE
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMM--H---------------SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~--~---------------~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vt 117 (131)
++..+.+||||+|-.-+|.+.+ . .-+++++||. +-+|....+..+++++++ |.-+|++|
T Consensus 374 s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiat 449 (483)
T 3euj_A 374 RAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAA 449 (483)
T ss_dssp ECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEE
T ss_pred ecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEEC
Confidence 4457899999999655554433 1 2368999999 999999999999999865 77788888
Q ss_pred cC
Q psy4761 118 HY 119 (131)
Q Consensus 118 H~ 119 (131)
=+
T Consensus 450 P~ 451 (483)
T 3euj_A 450 PE 451 (483)
T ss_dssp SS
T ss_pred cc
Confidence 65
No 137
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.72 E-value=1.5e-05 Score=57.71 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEE-------EEeCCCCC---CCHHHHHHHHHHHHHhhhCCc
Q psy4761 60 QVSGGQQRRISVAVTMMHSPLLL-------ILDEPTAG---LDPLISDTIWQHLRTLSATGV 111 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~~p~ll-------ilDEPt~g---LD~~~~~~i~~~l~~~~~~g~ 111 (131)
.|||||+||++||||++.+|++. +-|.|..+ +|....+.+.++|.+...+|.
T Consensus 103 glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 103 GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhccC
Confidence 59999999999999999999873 23444322 334456778888866554443
No 138
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.53 E-value=0.0054 Score=48.34 Aligned_cols=66 Identities=8% Similarity=0.116 Sum_probs=51.2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEE--cChh
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILD-EPTAGLDPLISDTIWQHLRTLSATGVTCIITT--HYIE 121 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vt--H~~~ 121 (131)
.+.++..+|+|++|.+. +.+...++-++++| +|..|+|......+++.+.+... +..+|++. ||+.
T Consensus 225 ~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 225 LDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp SSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred cccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 34567789999998776 55555677889999 99999999888888777766543 77888888 7763
No 139
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.32 E-value=6.5e-05 Score=63.12 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=40.2
Q ss_pred CCCHHHHHHH----------HHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHh----hhCCcEEEEEEcChh
Q psy4761 60 QVSGGQQRRI----------SVAVTMMHSPL-LLILDEPTAGLDPLISDTIWQHLRTL----SATGVTCIITTHYIE 121 (131)
Q Consensus 60 ~LS~G~~qrl----------~iaral~~~p~-llilDEPt~gLD~~~~~~i~~~l~~~----~~~g~tvi~vtH~~~ 121 (131)
.+|+|++|+. ++++++...|. ++++||++.-++.. ...+.+.+.++ ++-|.++|++||++.
T Consensus 268 ~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 268 ADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 4566665542 24555667787 89999999888732 23444444444 344889999999987
No 140
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.21 E-value=0.016 Score=44.78 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhhhCCcEEEEEE
Q psy4761 62 SGGQQRRISVAVTMMHSPLLLILDEP-TAGLDPLISDTIWQHLRTLSATGVTCIITT 117 (131)
Q Consensus 62 S~G~~qrl~iaral~~~p~llilDEP-t~gLD~~~~~~i~~~l~~~~~~g~tvi~vt 117 (131)
+..+.+|.+++.+...+++++|+||| +.++|......+.+..+... ...+++++.
T Consensus 164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~-~~~~~lv~~ 219 (295)
T 1ls1_A 164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG-PDEVLLVLD 219 (295)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC-CSEEEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC-CCEEEEEEe
Confidence 44566788999998899999999999 99999988888877776653 344555444
No 141
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.95 E-value=0.004 Score=49.16 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHH---hh--CCCEEEEeCCC
Q psy4761 60 QVSGGQQRRISVAVTM---MH--SPLLLILDEPT 88 (131)
Q Consensus 60 ~LS~G~~qrl~iaral---~~--~p~llilDEPt 88 (131)
++|+|++||.+++++| .. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 5899999999999999 66 89999999997
No 142
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.94 E-value=0.0062 Score=47.27 Aligned_cols=59 Identities=15% Similarity=0.123 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh---hCCcEEEE-EEcChhHHhc-CCcc
Q psy4761 67 RRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS---ATGVTCII-TTHYIEEARH-AHKV 129 (131)
Q Consensus 67 qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~---~~g~tvi~-vtH~~~~~~~-~dri 129 (131)
-+.++++ +.+|+++|+| |+|+|+.....+.++.+-+. ..+.++++ +||..+.+.+ ++++
T Consensus 173 l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~ 236 (296)
T 2px0_A 173 FQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRF 236 (296)
T ss_dssp HHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTT
T ss_pred HHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHH
Confidence 3455554 4999999999 99999876555544433332 12334444 4899888776 7654
No 143
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.93 E-value=0.025 Score=44.89 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hC-CcEEEEEEc
Q psy4761 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-AT-GVTCIITTH 118 (131)
Q Consensus 59 ~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~-g~tvi~vtH 118 (131)
+.||.++.+|+..|...+.+++++|.|+|... ...+...+++++ +. |..+|+|-|
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 57999999999999999999999999998654 235666666665 44 788888865
No 144
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.92 E-value=0.0034 Score=51.58 Aligned_cols=58 Identities=5% Similarity=-0.034 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hhhCCcEEEEEEcCh
Q psy4761 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRT-LSATGVTCIITTHYI 120 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~-~~~~g~tvi~vtH~~ 120 (131)
.|+... +.++++|..+++++++|+|+..|.+.....+.+.+++ +...|.+|+.+|.+-
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 466555 7999999999999999999999999999999999986 777899999988753
No 145
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.51 E-value=0.0072 Score=47.28 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=31.8
Q ss_pred HHhcCCCCCCCCcCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCC
Q psy4761 46 SLLNGLPDPNSLCGQVSGGQQRRI---SVAVTMMHSPLLLILDEPTA 89 (131)
Q Consensus 46 ~~~~~l~~~~~~~~~LS~G~~qrl---~iaral~~~p~llilDEPt~ 89 (131)
.+..+++. +...|+|+.+++ ++++++..+|+++|+|||..
T Consensus 155 ~~~~gl~~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 155 GERVGATV----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHTCEE----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHcCCcE----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 34455542 335689999999 89999999999999999975
No 146
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.43 E-value=0.026 Score=45.87 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=36.2
Q ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 78 SPLLLILDEPTAGLDP-LISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 78 ~p~llilDEPt~gLD~-~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
+|++|++||+..-.+. ...+.++..+.++.+.|..||++||+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 8999999999776653 577789999988877789999999973
No 147
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.99 E-value=0.011 Score=46.95 Aligned_cols=62 Identities=8% Similarity=0.065 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCccc
Q psy4761 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130 (131)
Q Consensus 62 S~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~ 130 (131)
+++..++-.|+.++..+|+.+++||+.. ..+.+.+..+.....|++.++|..+....+||+.
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~ 297 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGSCELTFERLA 297 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHH
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHH
Confidence 3666788999999999999999999986 2355666666544457899999977544577764
No 148
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.80 E-value=0.00015 Score=58.89 Aligned_cols=51 Identities=22% Similarity=0.122 Sum_probs=44.2
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHh-hhCCcEEEEEEcChhHHhc-CCccc
Q psy4761 78 SP--LLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTHYIEEARH-AHKVP 130 (131)
Q Consensus 78 ~p--~llilDEPt~gLD~~~~~~i~~~l~~~-~~~g~tvi~vtH~~~~~~~-~dri~ 130 (131)
+| ++.++|||+.++|+...++.++.+.+. ...|.|++ +|++..+.. ||++.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~ 193 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVY 193 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHH
Confidence 89 999999999999999999999999988 66677764 999988877 77763
No 149
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.70 E-value=0.086 Score=40.64 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=37.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh---CCcEEEEEEcChhHHh
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSA---TGVTCIITTHYIEEAR 124 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~---~g~tvi~vtH~~~~~~ 124 (131)
.+|.++++||+... |......+...+.++.. .+.++|++||+.+...
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 45889999999876 88888888777766554 5789999999986544
No 150
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.19 E-value=1e-05 Score=67.81 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=44.7
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEE--EEcChhHHhc-CC
Q psy4761 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCII--TTHYIEEARH-AH 127 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~--vtH~~~~~~~-~d 127 (131)
...+|+||+||.+++ ++ | |+|+|+...+.+++.+.++.+.|.|+++ +||+++++.. |+
T Consensus 398 ~~~~s~G~~~R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 398 TMWVRGNTRLRRTKE----------VN-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEESSSCEEEEEEE----------EE-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEEeCCCceEEEEE----------EE-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 346799999887664 12 7 9999998877777777777666889875 9999999875 54
No 151
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.12 E-value=0.029 Score=39.67 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4761 67 RRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRT 105 (131)
Q Consensus 67 qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~ 105 (131)
+...+|++++.+|+++++| ||++|......+++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3467899999999999999 999999999999988865
No 152
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.75 E-value=0.19 Score=37.69 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHhhh----CCcEEEEEEcChh
Q psy4761 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDP----------LISDTIWQHLRTLSA----TGVTCIITTHYIE 121 (131)
Q Consensus 62 S~G~~qrl~iaral~~~p~llilDEPt~gLD~----------~~~~~i~~~l~~~~~----~g~tvi~vtH~~~ 121 (131)
+++++.+..+..+...+|.+|++||+.+-.+. .....+...+..... .+..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 46788888888888899999999999765442 233345555544421 2456788888754
No 153
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.50 E-value=0.042 Score=40.58 Aligned_cols=64 Identities=22% Similarity=0.091 Sum_probs=42.5
Q ss_pred HHHHHHHHHHh--hCCCEEEEeCCCCC--CCHHHHHHHHHHHHHhhhCCcEEEEEEcChh--HHhcCCccc
Q psy4761 66 QRRISVAVTMM--HSPLLLILDEPTAG--LDPLISDTIWQHLRTLSATGVTCIITTHYIE--EARHAHKVP 130 (131)
Q Consensus 66 ~qrl~iaral~--~~p~llilDEPt~g--LD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~--~~~~~dri~ 130 (131)
+..+..++..+ .+.+++||||.+.. ++......+++.|.+ +-.+..||+++.+.. .++.||-|.
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VT 175 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVS 175 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCccee
Confidence 45556666667 56899999999652 233334567777764 334688999998763 344588653
No 154
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.54 E-value=0.18 Score=38.90 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcE--EEEEEcC
Q psy4761 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVT--CIITTHY 119 (131)
Q Consensus 61 LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~t--vi~vtH~ 119 (131)
||.++++++..|...+.++++++.|+|... ...+...++++.+ .|.. +|++-|-
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 999999999999999999999999998644 3446666666654 4777 8888773
No 155
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.12 E-value=0.15 Score=40.08 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcCh
Q psy4761 66 QRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYI 120 (131)
Q Consensus 66 ~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~ 120 (131)
.+.-.+++++..++.++++|.++. . .+.+.++.+. +.|.|+|++||.-
T Consensus 231 ~eL~~i~ral~~de~llvLDa~t~-~------~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 231 DEMKKIARVTKPNLVIFVGDALAG-N------AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHHCCSEEEEEEEGGGT-T------HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHHHhcCCCCEEEEecHHH-H------HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 344458999998889999995554 2 4445556665 4589999999943
No 156
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.53 E-value=0.07 Score=41.89 Aligned_cols=47 Identities=13% Similarity=0.312 Sum_probs=40.8
Q ss_pred cCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh
Q psy4761 58 CGQVSGGQQRRISVAVTMMH------SPLLLILDEPTAGLDPLISDTIWQHLRTLSA 108 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~------~p~llilDEPt~gLD~~~~~~i~~~l~~~~~ 108 (131)
...+|+|++|++..+++++. +|+++. +|++|......+++.|.++.+
T Consensus 208 ~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 208 GERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999987 688876 999999999999999988653
No 157
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.27 E-value=0.13 Score=36.20 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=31.6
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy4761 69 ISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106 (131)
Q Consensus 69 l~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~ 106 (131)
...|++++.+|++.++| |+++|....+.+++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999999998888664
No 158
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.09 E-value=0.27 Score=38.69 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=40.6
Q ss_pred CCCEEEEeCCCCCC---CHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 78 SPLLLILDEPTAGL---DPLISDTIWQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 78 ~p~llilDEPt~gL---D~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
.|.++++||--.-+ ++.....+.+.+++.++.|..++++||+++.+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 58999999997777 467788899999999888999999999998764
No 159
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.98 E-value=0.19 Score=38.89 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=36.2
Q ss_pred HHHHHHHHHh---hCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHhh-hCCcEEEEEEcChhH
Q psy4761 67 RRISVAVTMM---HSPLLLILDEPTAGLDP--------LI----SDTIWQHLRTLS-ATGVTCIITTHYIEE 122 (131)
Q Consensus 67 qrl~iaral~---~~p~llilDEPt~gLD~--------~~----~~~i~~~l~~~~-~~g~tvi~vtH~~~~ 122 (131)
+.+..++.++ .+|+++++|+.++-... .. ...+...|.+++ +.|++||+++|-...
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~ 260 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMAR 260 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC---
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeec
Confidence 5677777777 67999999999875432 11 234444555554 348999999886543
No 160
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.91 E-value=0.64 Score=35.34 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=33.0
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 76 MHSPLLLILDEPTA-GLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 76 ~~~p~llilDEPt~-gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
..++++|++||+-. .-+....+.++..+..+.+.|..+|+++++
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 45799999999854 234467788888888877777777777764
No 161
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.86 E-value=6.8e-05 Score=57.43 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCE--EEEeCCCCCCCHHHH--------HHHHHHHHHhhhCCcEEEEEEc
Q psy4761 60 QVSGGQQRRISVAVTMMHSPLL--LILDEPTAGLDPLIS--------DTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~~p~l--lilDEPt~gLD~~~~--------~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+|+| ||+++++++..+|++ +|+||.|+.+|.... +.+.+...+...+|.|.+.+.|
T Consensus 172 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~ 238 (261)
T 2eyu_A 172 PKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAM 238 (261)
T ss_dssp CCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHH
T ss_pred ecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHH
Confidence 56888 899999999999999 999999999987632 2233444344456777655544
No 162
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.49 E-value=0.18 Score=38.47 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=27.4
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 78 SPLLLILDEPTAGLD---PLISDTIWQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 78 ~p~llilDEPt~gLD---~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
.|.++++||+....+ ......+.+.+..+...+.++|++||+.+...
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 388999999976542 22222333333222233678999999886543
No 163
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.21 E-value=0.36 Score=37.74 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=35.4
Q ss_pred HHHHHHHHHh----hCCCEEEEeCCCCCCCHH------------HHHHHHHHHHHhh-hCCcEEEEEEcChhH
Q psy4761 67 RRISVAVTMM----HSPLLLILDEPTAGLDPL------------ISDTIWQHLRTLS-ATGVTCIITTHYIEE 122 (131)
Q Consensus 67 qrl~iaral~----~~p~llilDEPt~gLD~~------------~~~~i~~~l~~~~-~~g~tvi~vtH~~~~ 122 (131)
+.+..++.++ .+++++++|+.++-.... ....+...|.+++ +.|.+||+++|-...
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~ 276 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD 276 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceec
Confidence 4455555665 579999999998765431 1234445555555 358999999996643
No 164
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.00 E-value=0.98 Score=35.74 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=34.4
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHh----hhCCcEEEEEEcChhH
Q psy4761 67 RRISVAVTMM--HSPLLLILDEPTAGLDPL-------------ISDTIWQHLRTL----SATGVTCIITTHYIEE 122 (131)
Q Consensus 67 qrl~iaral~--~~p~llilDEPt~gLD~~-------------~~~~i~~~l~~~----~~~g~tvi~vtH~~~~ 122 (131)
+.+.+++.++ .+++++++|.+++-.... ..+.+.+.++++ ++.|++||+++|-...
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~ 202 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 202 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Confidence 4456667664 679999999998766321 112344445444 3458999999886543
No 165
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.37 E-value=0.12 Score=41.41 Aligned_cols=48 Identities=10% Similarity=-0.027 Sum_probs=35.0
Q ss_pred HHHHhcCCC-CCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q psy4761 44 YISLLNGLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS 107 (131)
Q Consensus 44 ~~~~~~~l~-~~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~ 107 (131)
++++.+++. ..++++.+|| ||+||++||+++ +++.-.+...+++.++.
T Consensus 297 e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl---------------i~~~R~~~y~~l~~e~~ 345 (358)
T 2rcn_A 297 EFHDYLGHCKYRDCKHDADP-GCAIREAVENGA---------------IAETRFENYHRILESMA 345 (358)
T ss_dssp GGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS---------------SCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC---------------CCHHHHHHHHHHHHHHH
Confidence 466778885 4788999999 999999999875 34544445555666654
No 166
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.97 E-value=0.0088 Score=43.21 Aligned_cols=52 Identities=12% Similarity=0.193 Sum_probs=35.0
Q ss_pred HH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh--------CCcEEEEEEcChhHH
Q psy4761 72 AV-TMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA--------TGVTCIITTHYIEEA 123 (131)
Q Consensus 72 ar-al~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~--------~g~tvi~vtH~~~~~ 123 (131)
++ +++.+|++++|||+|+++|....+.+.+.|.+..+ ...-.|++-++++.+
T Consensus 117 ~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~~~~~D~iivnd~le~a 177 (198)
T 1lvg_A 117 PIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKA 177 (198)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGSTTTCSEEEECSSHHHH
T ss_pred cEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCceEEEECCCHHHH
Confidence 44 66777788888888999998777778777766532 222345566666554
No 167
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.68 E-value=0.00011 Score=58.97 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCE--EEEeCCCCCCCHHH---H-----HHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 60 QVSGGQQRRISVAVTMMHSPLL--LILDEPTAGLDPLI---S-----DTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~~p~l--lilDEPt~gLD~~~---~-----~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+|+| ||+++++++..+|++ +|+||.|+.+|... . +.+.+...+...+|.|.+.+.|.+
T Consensus 283 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~ 351 (372)
T 2ewv_A 283 PKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEA 351 (372)
T ss_dssp ECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSS
T ss_pred ecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHH
Confidence 45788 889999999999999 99999999988541 1 233444444445688777666654
No 168
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.55 E-value=0.00093 Score=48.56 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHH-HHHhhCCCEEEEeCCC
Q psy4761 59 GQVSGGQQRRISVA-VTMMHSPLLLILDEPT 88 (131)
Q Consensus 59 ~~LS~G~~qrl~ia-ral~~~p~llilDEPt 88 (131)
..+|+|++|+++++ ++++.++.++++|||.
T Consensus 110 ~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 110 RDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred ccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 35799999999998 8888888888899984
No 169
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.84 E-value=0.27 Score=34.66 Aligned_cols=48 Identities=15% Similarity=0.291 Sum_probs=25.9
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHhhhCCcEEEEEEc-ChhHH
Q psy4761 76 MHSPLLLILDEPTA-GLDPLISDTIW-QHLRTLSATGVTCIITTH-YIEEA 123 (131)
Q Consensus 76 ~~~p~llilDEPt~-gLD~~~~~~i~-~~l~~~~~~g~tvi~vtH-~~~~~ 123 (131)
+.++++|++||+-. .++......++ .++......+..+|++|+ +++.+
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l 163 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQL 163 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHH
Confidence 45678999999932 23332334344 455554344555666655 55544
No 170
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.99 E-value=0.45 Score=33.74 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=30.3
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhhhCCcE-EEEEEcC
Q psy4761 76 MHSPLLLILDEPTAGL-DPLISDTIWQHLRTLSATGVT-CIITTHY 119 (131)
Q Consensus 76 ~~~p~llilDEPt~gL-D~~~~~~i~~~l~~~~~~g~t-vi~vtH~ 119 (131)
+.+|.++++||.-.-- +......+.+.+....+.+.. +|++|+.
T Consensus 102 ~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 102 LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 3679999999965432 233367788888877665654 7787774
No 171
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=85.86 E-value=0.49 Score=35.63 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=31.4
Q ss_pred HHHHHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 71 VAVTMMHSPLLLILDEPTAG-LDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 71 iaral~~~p~llilDEPt~g-LD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
+..++..+|+++|+||+-.. .+.......++.+.+..+.|..++.++|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 33334578999999998642 3433333455555555567888998888
No 172
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.85 E-value=0.0019 Score=49.43 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=36.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC------------CCCHHHHHHHHHHH
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTA------------GLDPLISDTIWQHL 103 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~------------gLD~~~~~~i~~~l 103 (131)
++.+.+|||||+|++.+++|+.++|++| ||++. --|...+..+++.+
T Consensus 132 ~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 132 NQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 4456689999999999999999999985 99864 23666666666554
No 173
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=85.81 E-value=0.55 Score=39.69 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=46.2
Q ss_pred cCCCCHH-HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEc
Q psy4761 58 CGQVSGG-QQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118 (131)
Q Consensus 58 ~~~LS~G-~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH 118 (131)
.+.|+.+ .++...+++.++.+|..++++.++.++|... ....++++++... +.||+++||
T Consensus 162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~-~~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIAT-TEALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTT-CHHHHHHHHHCSSCCSEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhcc-HHHHHHHHHHhhcCCceEEEecc
Confidence 5666555 4577889999999999999999999999874 4466777777544 578888888
No 174
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.70 E-value=0.13 Score=43.26 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=41.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy4761 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~ 106 (131)
..+.+|+|++|++..++....++.+|++||... |++..+..+.+.|.+-
T Consensus 180 ~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~~ 228 (604)
T 3k1j_A 180 QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQEK 228 (604)
T ss_dssp ----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHHS
T ss_pred hcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHcC
Confidence 346799999999999999999999999999988 8999999999998753
No 175
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=85.50 E-value=0.92 Score=33.65 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=27.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
+++++++||--. ++.. +.+.++.+.+.|.+||++.|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~ 125 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLD 125 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCS
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEecc
Confidence 589999999964 5543 444556666569999999994
No 176
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.22 E-value=4.2 Score=32.18 Aligned_cols=53 Identities=9% Similarity=0.133 Sum_probs=33.9
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCCCCCH----------------HHHHHHHHHHHHhh-hCCcEEEEEEcC
Q psy4761 67 RRISVAVTMM--HSPLLLILDEPTAGLDP----------------LISDTIWQHLRTLS-ATGVTCIITTHY 119 (131)
Q Consensus 67 qrl~iaral~--~~p~llilDEPt~gLD~----------------~~~~~i~~~l~~~~-~~g~tvi~vtH~ 119 (131)
+.+.+++.++ .+|+++++|.-++=... .....++..|..++ +.|.|||++.|-
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 4556677665 46999999987655431 11223344455555 458999999886
No 177
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.21 E-value=1.1 Score=31.24 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=31.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+|.++++||.-. +++.....+.+.+.+. ..+..+|++|++...
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQK 168 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHh
Confidence 478999999765 7877777777666543 246788888887643
No 178
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.25 E-value=0.069 Score=41.48 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=36.5
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChhHHh
Q psy4761 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIEEAR 124 (131)
Q Consensus 54 ~~~~~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~~~~ 124 (131)
..+.+..||+|++||+.++ .+||+...+.+.+++++..+ .| ++|+.+.+.
T Consensus 156 at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~ 206 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAE 206 (334)
T ss_dssp EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHH
T ss_pred ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHH
Confidence 3456789999999998654 67888888888888888753 34 256665543
No 179
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=82.94 E-value=2.3 Score=32.11 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=28.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
.+.+++++||----.+ +.++++.+.+.|+.||++.++
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~ 125 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALD 125 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCS
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecc
Confidence 7789999999976643 455555555579999999999
No 180
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=82.91 E-value=5.2 Score=31.66 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=34.7
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCCCCC-----H--------HHHHHHHHHHHHh---h-hCCcEEEEEEcChh
Q psy4761 67 RRISVAVTMM--HSPLLLILDEPTAGLD-----P--------LISDTIWQHLRTL---S-ATGVTCIITTHYIE 121 (131)
Q Consensus 67 qrl~iaral~--~~p~llilDEPt~gLD-----~--------~~~~~i~~~l~~~---~-~~g~tvi~vtH~~~ 121 (131)
+.+.+++.++ .+++++|+|..++=.. - ...+.+.+.++++ . +.|++||+++|-..
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~ 212 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVRE 212 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEeccc
Confidence 4556677776 5699999999976441 0 1123455566555 3 45899999988643
No 181
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=81.72 E-value=2.2 Score=34.25 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=32.6
Q ss_pred HHHHHHh--hCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHhhh-CCcEEEEEEcC
Q psy4761 70 SVAVTMM--HSPLLLILDEPTAGLDP----------LISDTIWQHLRTLSA-TGVTCIITTHY 119 (131)
Q Consensus 70 ~iaral~--~~p~llilDEPt~gLD~----------~~~~~i~~~l~~~~~-~g~tvi~vtH~ 119 (131)
+.++.+. ++++++++|..+.-... .....+...|+.+++ .|++||+++|-
T Consensus 300 ~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 362 (444)
T 2q6t_A 300 ARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQL 362 (444)
T ss_dssp HHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 3444454 47999999998653322 123456666666654 49999999983
No 182
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.30 E-value=2.2 Score=32.26 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=31.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
+++++++|| ...+++.....+.+.+.+... +..+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 456999999 778899888888888877543 455777777664
No 183
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=81.26 E-value=0.015 Score=48.13 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=34.2
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChhHH
Q psy4761 73 VTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIEEA 123 (131)
Q Consensus 73 ral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~~~ 123 (131)
|||..+ ++||+ ||++.+||. ...+. .++.+. +.++.++||+++++
T Consensus 28 ralt~d-dvlLm-p~~s~~~p~-~v~l~---~eLt~~~~~~iP~vsa~md~~ 73 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIAD-EVDLT---SALTRKITLKTPLISSPMDTV 73 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCGG-GCBCC---EESSSSCEESSCEEECCCTTT
T ss_pred cccccC-cEEec-cCccCCCcc-eeEEE---eeccCCeeEeceEEEEehhhh
Confidence 789999 99999 999999994 32222 234333 67889999999876
No 184
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=80.65 E-value=0.074 Score=37.86 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH--h-cCCccc
Q psy4761 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA--R-HAHKVP 130 (131)
Q Consensus 62 S~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~--~-~~dri~ 130 (131)
+.|+.+|..+++.+..+|+.+-.+ .+.++|...+.+.+.+... .+.++|+.+|.+.+. . .||+++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi 128 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRIL 128 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEE
Confidence 678899999998888877643332 3345565555555544432 355888889988765 3 378765
No 185
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=79.36 E-value=0.88 Score=34.97 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=25.4
Q ss_pred hhCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHhhhCCcEEEEEEc-ChhHH
Q psy4761 76 MHSPLLLILDEPT-AGLDPLISDTIWQ-HLRTLSATGVTCIITTH-YIEEA 123 (131)
Q Consensus 76 ~~~p~llilDEPt-~gLD~~~~~~i~~-~l~~~~~~g~tvi~vtH-~~~~~ 123 (131)
+.++++|++||.- ..++......++. ++......+..+|++|+ .++.+
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l 262 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADL 262 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHH
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHH
Confidence 4578999999983 2344433443444 66543334456667776 44443
No 186
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=78.89 E-value=6.6 Score=26.09 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=38.9
Q ss_pred hCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 77 HSPLLLILD-EPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 77 ~~p~llilD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++| .-.+.+|......+.++.+++++.|..+.++.-+...
T Consensus 62 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 108 (143)
T 3llo_A 62 ENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQV 108 (143)
T ss_dssp -CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHHH
T ss_pred CCceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 368899999 6789999999999999999998889998888765543
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=77.29 E-value=1.8 Score=33.66 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCC-cEEEEEEcChhHH
Q psy4761 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG-VTCIITTHYIEEA 123 (131)
Q Consensus 59 ~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g-~tvi~vtH~~~~~ 123 (131)
++.+++++++..+++..+.+|+++|+.-..+..|... ....++++++...| .+|+++|. .+.+
T Consensus 153 ~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK-~Dl~ 216 (360)
T 3t34_A 153 GQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK-IDLM 216 (360)
T ss_dssp TCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC-GGGC
T ss_pred CCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC-CccC
Confidence 3567888999999999999999888874444445433 44556677765555 46666654 4443
No 188
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=76.22 E-value=1.2 Score=35.31 Aligned_cols=49 Identities=8% Similarity=0.128 Sum_probs=37.8
Q ss_pred CCCcCCCCHHHHHHHHHH----HHH-hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q psy4761 55 NSLCGQVSGGQQRRISVA----VTM-MHSPLLLILDEPTAGLDPLISDTIWQHLRTLS 107 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~ia----ral-~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~ 107 (131)
..++..+|+|+++++.++ +++ ..+|++ +|+|++|......+++.|.+..
T Consensus 299 ~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 299 LNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 345777898888888877 555 334454 8999999999999999998764
No 189
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=76.08 E-value=3.1 Score=30.60 Aligned_cols=54 Identities=24% Similarity=0.258 Sum_probs=35.6
Q ss_pred HHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHhh---h-CCcEEEEEEcChhHH
Q psy4761 70 SVAVTMMHSPLLLILDEPTA----------GLDPLISDTIWQHLRTLS---A-TGVTCIITTHYIEEA 123 (131)
Q Consensus 70 ~iaral~~~p~llilDEPt~----------gLD~~~~~~i~~~l~~~~---~-~g~tvi~vtH~~~~~ 123 (131)
.+..+-..+|.+|++||.-. +-+......+..++..+. . .+..||.+|+..+.+
T Consensus 102 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 102 IFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp HHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred HHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 34555567889999999732 125566677777777653 2 256778888866544
No 190
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=75.99 E-value=5.4 Score=30.05 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=34.2
Q ss_pred HHHHHHHhhCCCEEEEeCCCC-------------CCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChhHH
Q psy4761 69 ISVAVTMMHSPLLLILDEPTA-------------GLDPLISDTIWQHLRTLS-ATGVTCIITTHYIEEA 123 (131)
Q Consensus 69 l~iaral~~~p~llilDEPt~-------------gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~~~ 123 (131)
-.+..|....|.++++||.-+ +........++..+..+. ..+..||.+|+..+.+
T Consensus 99 ~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 99 EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred HHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 345555567899999999642 222333455555555443 2367888999987544
No 191
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=75.76 E-value=7.3 Score=30.12 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=29.0
Q ss_pred HHHHHHHHhhCCCEEEEeCC-------CCCCCHHHHHHHHHHHHHhh------hCCcEEEEEEcChhH
Q psy4761 68 RISVAVTMMHSPLLLILDEP-------TAGLDPLISDTIWQHLRTLS------ATGVTCIITTHYIEE 122 (131)
Q Consensus 68 rl~iaral~~~p~llilDEP-------t~gLD~~~~~~i~~~l~~~~------~~g~tvi~vtH~~~~ 122 (131)
+-.+..+-..+|.+|++||. ..+.+......+.+++..+. ..+..||.+|+..+.
T Consensus 166 ~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~ 233 (357)
T 3d8b_A 166 RALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233 (357)
T ss_dssp HHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGG
T ss_pred HHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhh
Confidence 34455555678999999998 33333333333333343332 124566778887643
No 192
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=75.74 E-value=4.1 Score=25.78 Aligned_cols=43 Identities=9% Similarity=-0.005 Sum_probs=36.7
Q ss_pred hCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 77 HSPLLLILD-EPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
.+|+.+++| .....+|......+.+..+++++.|.++.++.-+
T Consensus 42 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 85 (99)
T 3oiz_A 42 EALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGMN 85 (99)
T ss_dssp SCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEESHH
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 467889999 6788999999999999999998889988777543
No 193
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=75.73 E-value=9.3 Score=25.26 Aligned_cols=46 Identities=13% Similarity=0.251 Sum_probs=39.1
Q ss_pred hCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 77 HSPLLLILD-EPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 77 ~~p~llilD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+++.+++| ...+.+|......+.+..+++++.|..+.++.-+...
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 96 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSDRL 96 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCCHHH
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 578999999 6788999999999999999998888998888765543
No 194
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=75.73 E-value=4.5 Score=26.34 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=39.1
Q ss_pred hCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 77 HSPLLLILD-EPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 77 ~~p~llilD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+|+.+++| ...+.+|......+.+..+++++ |..++++.-+...
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l~l~~~~~~v 89 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCELRVCNVEFQP 89 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEEEEECCCHHH
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEEEEecCCHHH
Confidence 678999999 68899999999999999999988 9999888766543
No 195
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=74.23 E-value=29 Score=27.62 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEc
Q psy4761 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTH 118 (131)
Q Consensus 59 ~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH 118 (131)
+.||.++.+++.-|...+.+.++++.|+|.. +. ..+...++++. +.|..+|++-+
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~---~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TL---MEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BH---HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CH---HHHHHHHHHHHHHcCCCEEEEcC
Confidence 5799999999998888888889999998744 33 33455566664 45777888765
No 196
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=73.89 E-value=0.026 Score=45.99 Aligned_cols=36 Identities=11% Similarity=-0.066 Sum_probs=28.3
Q ss_pred HHhcCCCCCCCCcCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy4761 46 SLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLIL 84 (131)
Q Consensus 46 ~~~~~l~~~~~~~~~LS~G~~qrl~iaral~~~p~llil 84 (131)
+..+++... ..+.+|||||+|| |||+++.+|++..-
T Consensus 280 L~~lgl~~~-~~~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 280 LRDMGIEPF-LISSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHHTCCHH-HHHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHcCCcHH-HHHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 455566432 3677999999999 99999999999763
No 197
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=73.76 E-value=2.4 Score=29.94 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=28.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++++++||--. +++. +.+.++.+.+.|..|+++.++.+
T Consensus 75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp TTEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeeccc
Confidence 3678999999744 4432 45566666666899999888554
No 198
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=72.52 E-value=7.3 Score=26.54 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=30.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.++.++++||.- .+++.....+...+.+. ..+..+|++|+...
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMY-SKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHT-TTTEEEEEEESCGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhc-CCCCeEEEEeCChh
Confidence 568899999964 46777777777777663 33567778887654
No 199
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=72.47 E-value=7 Score=28.12 Aligned_cols=54 Identities=9% Similarity=0.028 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhhCCcEEEEE
Q psy4761 61 VSGGQQRRISVAVTMMHSPLLLILDEPTA-GLDPLISDTIWQHLRTLSATGVTCIIT 116 (131)
Q Consensus 61 LS~G~~qrl~iaral~~~p~llilDEPt~-gLD~~~~~~i~~~l~~~~~~g~tvi~v 116 (131)
.+.|.-.+. ...-+.+.+++|+||.-. ++|........+.+.....+-.+++++
T Consensus 161 ~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~S 215 (235)
T 3llm_A 161 CTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMS 215 (235)
T ss_dssp EEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred ECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 345655544 334578999999999976 677766544444443333222344444
No 200
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=72.09 E-value=3.8 Score=31.11 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=31.7
Q ss_pred HHHHHHHHh---hCCCEEEEeCCCCCCC--------HHH----HHHHHHHHHHhh-hCCcEEEEEEcC
Q psy4761 68 RISVAVTMM---HSPLLLILDEPTAGLD--------PLI----SDTIWQHLRTLS-ATGVTCIITTHY 119 (131)
Q Consensus 68 rl~iaral~---~~p~llilDEPt~gLD--------~~~----~~~i~~~l~~~~-~~g~tvi~vtH~ 119 (131)
.+..++.++ .+++++++|..++-.. ... ...+...|++++ +.|.+||++.|-
T Consensus 191 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~ 258 (322)
T 2i1q_A 191 FAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV 258 (322)
T ss_dssp HHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECE
T ss_pred HHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECce
Confidence 444455555 4589999998875321 111 234444555554 468999998873
No 201
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=72.08 E-value=11 Score=24.97 Aligned_cols=40 Identities=13% Similarity=0.022 Sum_probs=29.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
+..++++||.- .+++..+..+.+.+.+....+..+|.+|+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 46899999975 47888888888888775434566666665
No 202
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=71.88 E-value=5 Score=32.67 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=34.7
Q ss_pred HHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 68 RISVAVTMMHSPLLLILDEPT-AG--LDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 68 rl~iaral~~~p~llilDEPt-~g--LD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
+-+++.+...+++++|+|+|- .+ .|+.....+.++.+........+++.++.
T Consensus 169 ~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 169 KKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 345666666799999999996 34 78877777777665554334444555543
No 203
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=70.76 E-value=8.7 Score=27.45 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=28.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+.+++++||--- +|+.. .+.++++...|..||++.++.
T Consensus 80 ~~~dvViIDEaqf-l~~~~----v~~l~~l~~~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 80 EDTEVIAIDEVQF-FDDEI----VEIVNKIAESGRRVICAGLDM 118 (191)
T ss_dssp TTCSEEEECSGGG-SCTHH----HHHHHHHHHTTCEEEEEECSB
T ss_pred ccCCEEEEECCCC-CCHHH----HHHHHHHHhCCCEEEEEeccc
Confidence 3579999999644 66443 456667666689999999854
No 204
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=70.26 E-value=9.7 Score=32.38 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=32.9
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 75 MMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 75 l~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
-..+..++++| |+.|+++...+ + ++.+.+.|..+|++.|.++..
T Consensus 96 ~~ad~~ilVvD-~~~g~~~qt~~-~---~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 96 EAADAALVAVS-AEAGVQVGTER-A---WTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHCSEEEEEEE-TTTCSCHHHHH-H---HHHHHHTTCCEEEEEECGGGC
T ss_pred hhcCcEEEEEc-CCcccchhHHH-H---HHHHHHccCCEEEEecCCchh
Confidence 35788899999 99999987653 3 333334588899999998865
No 205
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=70.22 E-value=19 Score=23.35 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=39.9
Q ss_pred hCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 77 HSPLLLILD-EPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 77 ~~p~llilD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.+|+.+++| ...+.+|......+.+..+++++.|..++++.-....
T Consensus 47 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 93 (130)
T 4dgh_A 47 ETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSRV 93 (130)
T ss_dssp SCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCCHHH
T ss_pred cCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 578999999 7899999999999999999998889999888765543
No 206
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=69.91 E-value=2.2 Score=32.51 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHhhhC-Cc--EEEEEEcChhHH
Q psy4761 61 VSGGQQRRISVAVTMM--HSPLLLILDEPTAGLDPLI-SDTIWQHLRTLSAT-GV--TCIITTHYIEEA 123 (131)
Q Consensus 61 LS~G~~qrl~iaral~--~~p~llilDEPt~gLD~~~-~~~i~~~l~~~~~~-g~--tvi~vtH~~~~~ 123 (131)
+|.|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++.+. |. .+.+++|+-+-+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 888886 4566666 68999998 7888866 56677888887653 43 555666665443
No 207
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=68.92 E-value=11 Score=29.94 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=45.5
Q ss_pred HHHhcCCCCCCCCcCCCCHHHHHHHHHHHHH--h--hCCCEEEEeCCCCCCC-H--------------HHHHHHHHHHHH
Q psy4761 45 ISLLNGLPDPNSLCGQVSGGQQRRISVAVTM--M--HSPLLLILDEPTAGLD-P--------------LISDTIWQHLRT 105 (131)
Q Consensus 45 ~~~~~~l~~~~~~~~~LS~G~~qrl~iaral--~--~~p~llilDEPt~gLD-~--------------~~~~~i~~~l~~ 105 (131)
..+.+|++..+-.+.+=..++++.+.++..+ + .+|+++++|--++=.. . ...+.+.+.+++
T Consensus 74 ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~Lrk 153 (333)
T 3io5_A 74 YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRI 153 (333)
T ss_dssp HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHH
T ss_pred HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHH
Confidence 4566776432222223335666667777776 3 4799999998765431 0 123344455554
Q ss_pred h----hhCCcEEEEEEcChh
Q psy4761 106 L----SATGVTCIITTHYIE 121 (131)
Q Consensus 106 ~----~~~g~tvi~vtH~~~ 121 (131)
+ ++.|+++|++-|-..
T Consensus 154 L~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 154 VTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHhCCEEEEECCeee
Confidence 3 356999999999765
No 208
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=68.77 E-value=1.1 Score=33.24 Aligned_cols=37 Identities=11% Similarity=-0.014 Sum_probs=28.0
Q ss_pred HHHHhcCCCCCCCCcCCCCHHHHHHHHHHHHHhhCCC
Q psy4761 44 YISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPL 80 (131)
Q Consensus 44 ~~~~~~~l~~~~~~~~~LS~G~~qrl~iaral~~~p~ 80 (131)
.+.+.+|.+..++.++.||||..|+...+++|+..|+
T Consensus 57 ~le~~lg~~L~~R~~~~lsg~~~~lt~~g~~l~~~~~ 93 (265)
T 1b9m_A 57 EMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp HHHHHHTSCCEEECCCC-----EEECHHHHHHHHHHH
T ss_pred HHHHHhCCCeEEecCCCCCCCceEECHHHHHHHHHHH
Confidence 4677888877788899999999999999999998887
No 209
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=68.67 E-value=18 Score=22.28 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=37.4
Q ss_pred HhhCC-CEEEEe-CCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 75 MMHSP-LLLILD-EPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 75 l~~~p-~llilD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
+...+ +.+++| .-.+.+|......+....+++++.|..+.++.-...
T Consensus 39 ~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 87 (110)
T 1sbo_A 39 ISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKES 87 (110)
T ss_dssp HHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCHH
T ss_pred HhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 33344 788999 678899999999999999998888888888765543
No 210
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=67.77 E-value=15 Score=29.71 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=33.4
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCCCC-------CH-HHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 67 RRISVAVTMM--HSPLLLILDEPTAGL-------DP-LISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 67 qrl~iaral~--~~p~llilDEPt~gL-------D~-~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
+.++.++.+. .+|+++++|=-+. + +. .....+...|+.+++ .|++||+++|--
T Consensus 341 ~i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~ 404 (503)
T 1q57_A 341 RLLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 404 (503)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCC
Confidence 3444555554 4799999995433 2 11 233456666666654 499999999954
No 211
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=67.48 E-value=23 Score=25.22 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=29.0
Q ss_pred HHHHHHhhCCCEEEEeCCCCCC-----------CHHHHHHHHHHHHHhhh----CCcEEEEEEcChhHH
Q psy4761 70 SVAVTMMHSPLLLILDEPTAGL-----------DPLISDTIWQHLRTLSA----TGVTCIITTHYIEEA 123 (131)
Q Consensus 70 ~iaral~~~p~llilDEPt~gL-----------D~~~~~~i~~~l~~~~~----~g~tvi~vtH~~~~~ 123 (131)
.+..+....|.++++||.-.-. +......+..++..+.. .+..+|.+|+..+.+
T Consensus 90 ~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 90 LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADIL 158 (262)
T ss_dssp HHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGG
T ss_pred HHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhc
Confidence 3445555679999999985421 23333445555555432 245677777766543
No 212
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=66.90 E-value=3.1 Score=34.77 Aligned_cols=52 Identities=15% Similarity=0.327 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHh-hCC-CEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChhH
Q psy4761 64 GQQRRISVAVTMM-HSP-LLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIEE 122 (131)
Q Consensus 64 G~~qrl~iaral~-~~p-~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~~ 122 (131)
..+|++.+++++. ..| .+++...+++|.|.. +.++.+. .-|.|.+++|| ++.
T Consensus 396 EL~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 396 ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVGLTGITLTK-LDG 450 (503)
T ss_dssp HHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTCCSEEEEEC-GGG
T ss_pred HHHHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHHhhcCCCEEEEEc-CCC
Confidence 4457788888764 456 355555588886543 3344444 34889999999 444
No 213
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=65.46 E-value=24 Score=22.87 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=37.5
Q ss_pred HhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 75 MMHSPLLLILD-EPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 75 l~~~p~llilD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
+..+++.+++| .-.+.+|......+....+++++.|..+.++.=..
T Consensus 48 ~~~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~~~~~ 94 (125)
T 2ka5_A 48 LNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNE 94 (125)
T ss_dssp TTTTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred hhCCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 34467889999 67889999999999999999887788888776443
No 214
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=62.26 E-value=9.8 Score=25.58 Aligned_cols=60 Identities=17% Similarity=0.035 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 60 QVSGGQQRRISVAVTMMHSP--LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~~p--~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
....|.. .+.+|+-... .+||-|+-...=|+..+..+.+++....+.|..|.++|.+-+.
T Consensus 38 ~~~yG~~---eV~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~el~e~~~~~G~~V~ivs~~~~~ 99 (124)
T 1x52_A 38 RAFYGLK---QVEKANEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVS 99 (124)
T ss_dssp GEEESHH---HHHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHH
T ss_pred cEEECHH---HHHHHHHcCCccEEEechhhhcCCChHHHHHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 3444543 3555665554 5666666655557878888888555555678888888876554
No 215
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=62.15 E-value=13 Score=27.33 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=27.2
Q ss_pred HHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy4761 70 SVAVTMMHSP-LLLILDEPTAGLDPLISDTIWQHLRTL 106 (131)
Q Consensus 70 ~iaral~~~p-~llilDEPt~gLD~~~~~~i~~~l~~~ 106 (131)
.+..++...| .++++||. ..+++.....+.+.+.+-
T Consensus 110 ~~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 110 QLTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp HHHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred hHHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 3455565555 89999998 557888888888888764
No 216
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=61.74 E-value=8.7 Score=29.03 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=29.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++++++||.- .++......+.+.+.+. ..+..+|++|++..
T Consensus 118 ~~~~vliiDe~~-~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEVH-MLSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECGG-GSCHHHHHHHHHHHHSC-CSSEEEEEEESCGG
T ss_pred CCeEEEEEECcc-hhcHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 357899999964 46777777777666543 23567788888654
No 217
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=61.74 E-value=11 Score=29.34 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=28.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
.++++++|-|..|++....+. + + .+..++++|.+.....
T Consensus 295 ~fD~Vv~dPPr~g~~~~~~~~----l---~-~~g~ivyvsc~p~t~a 333 (369)
T 3bt7_A 295 QCETIFVDPPRSGLDSETEKM----V---Q-AYPRILYISCNPETLC 333 (369)
T ss_dssp CEEEEEECCCTTCCCHHHHHH----H---T-TSSEEEEEESCHHHHH
T ss_pred CCCEEEECcCccccHHHHHHH----H---h-CCCEEEEEECCHHHHH
Confidence 579999999999998643322 2 2 5678999999886543
No 218
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=61.51 E-value=13 Score=24.19 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=37.4
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 78 SPLLLILD-EPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 78 ~p~llilD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
+++.+++| .-.+.+|......+.++.+++++.|..++++.-...
T Consensus 47 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 91 (130)
T 2kln_A 47 QVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQD 91 (130)
T ss_dssp CCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSSH
T ss_pred CceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 57899999 678889999999999999999888998888765543
No 219
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=59.85 E-value=40 Score=25.62 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=38.6
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcC
Q psy4761 71 VAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHA 126 (131)
Q Consensus 71 iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~ 126 (131)
+..|...+.+.++|+ ++.|+....+.+.+..++ -|..+++-.|+.+++.++
T Consensus 135 i~ea~~~GAD~VlLi--~a~L~~~~l~~l~~~a~~---lGl~~lvevh~~eEl~~A 185 (272)
T 3tsm_A 135 VYEARSWGADCILII--MASVDDDLAKELEDTAFA---LGMDALIEVHDEAEMERA 185 (272)
T ss_dssp HHHHHHTTCSEEEEE--TTTSCHHHHHHHHHHHHH---TTCEEEEEECSHHHHHHH
T ss_pred HHHHHHcCCCEEEEc--ccccCHHHHHHHHHHHHH---cCCeEEEEeCCHHHHHHH
Confidence 667788999999996 446777555555555444 499999999999999763
No 220
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=58.47 E-value=21 Score=27.04 Aligned_cols=53 Identities=11% Similarity=0.028 Sum_probs=32.6
Q ss_pred HHHHHHHHh--hCCC--EEEEeCCCCCC------C-HHHHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 68 RISVAVTMM--HSPL--LLILDEPTAGL------D-PLISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 68 rl~iaral~--~~p~--llilDEPt~gL------D-~~~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
..+.++.+. .+++ ++++|--+.=- + ......+...|+.+++ .|++||+++|--
T Consensus 167 i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~ 231 (315)
T 3bh0_A 167 IWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLS 231 (315)
T ss_dssp HHHHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecC
Confidence 334445554 3688 99999754211 1 1333456666777654 499999999943
No 221
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=58.43 E-value=9.2 Score=29.05 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=32.1
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 72 AVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 72 aral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
...+..+.+++++||+-..+.......+.+.+.+.. .+..+|+++.+
T Consensus 70 ~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~-~~~~~il~~~~ 116 (343)
T 1jr3_D 70 AMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLH-DDLLLIVRGNK 116 (343)
T ss_dssp HHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCB-TTEEEEEEESC
T ss_pred CcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCC-CCeEEEEEcCC
Confidence 344567889999999977677666666766665432 35666666655
No 222
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=57.95 E-value=9.8 Score=33.12 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=34.1
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCC----------HHHHHHHHHHHHHhhh-CCcEEEEEEcChhHHh
Q psy4761 68 RISVAVTMMHSPLLLILDEPTAGLD----------PLISDTIWQHLRTLSA-TGVTCIITTHYIEEAR 124 (131)
Q Consensus 68 rl~iaral~~~p~llilDEPt~gLD----------~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~~~~ 124 (131)
+..+..+....|.++++||+...+. ......+...+..+.. .+..+|.+||+.+.+.
T Consensus 287 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 287 RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp HHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred HHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 3445566667899999999944332 1222334444443332 3568888999875543
No 223
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=57.22 E-value=24 Score=21.93 Aligned_cols=43 Identities=9% Similarity=0.066 Sum_probs=36.0
Q ss_pred CCEEEEe-CCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 79 PLLLILD-EPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 79 p~llilD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
++.+++| .-.+.+|......+....+++++.|..+.++.-...
T Consensus 43 ~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 86 (116)
T 1th8_B 43 IRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVSPA 86 (116)
T ss_dssp CCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESCCHH
T ss_pred CcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeEEEEeCCHH
Confidence 7888999 667889999999999999999888888887765543
No 224
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=57.16 E-value=32 Score=27.08 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=29.7
Q ss_pred HHHHHHHH-HHHHHhhCCCEEEEeCCCCCCCHHH--------HHHHHHHHHHh---h-hCCcEEEEEEcC
Q psy4761 63 GGQQRRIS-VAVTMMHSPLLLILDEPTAGLDPLI--------SDTIWQHLRTL---S-ATGVTCIITTHY 119 (131)
Q Consensus 63 ~G~~qrl~-iaral~~~p~llilDEPt~gLD~~~--------~~~i~~~l~~~---~-~~g~tvi~vtH~ 119 (131)
.+..+.+. +...+.... ++++||-.+=-.... .+.+.+.+.++ . +.|+|+|++++-
T Consensus 167 ~~le~~l~~i~~~l~~~~-LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 167 TDFNVFVDDIARAMLQHR-VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp CCHHHHHHHHHHHHHHCS-EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred cCHHHHHHHHHHHHhhCC-EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 33444444 444454444 999999765322111 12234444433 3 458999998873
No 225
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=56.87 E-value=6.7 Score=29.62 Aligned_cols=44 Identities=16% Similarity=0.081 Sum_probs=25.5
Q ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHHHHHhh----hCCcEEEEEEcChh
Q psy4761 78 SPLLLILDEPTAGLDPL-ISDTIWQHLRTLS----ATGVTCIITTHYIE 121 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~-~~~~i~~~l~~~~----~~g~tvi~vtH~~~ 121 (131)
+|.++++||.-.-.+.. ....+..+++... ..+.++|++|++.+
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 36799999975432111 3344555554432 33678899998773
No 226
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=56.44 E-value=16 Score=26.05 Aligned_cols=32 Identities=16% Similarity=0.388 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 88 TAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 88 t~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
..||++...+.+.+++....++|..+.+++=.
T Consensus 30 ~~gl~~~aa~al~~m~~~a~~~Gi~l~i~sgy 61 (179)
T 2vo9_A 30 AGGMYKITSDKTRNVIKKMAKEGIYLCVAQGY 61 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred ccccCHHHHHHHHHHHHHHHHCCCeEEEEEEE
Confidence 45899999999999999988889887766643
No 227
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=56.19 E-value=6.7 Score=30.94 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=33.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
.|-++++||-.+-... ..+.+.+...++.|..++++++++..+.
T Consensus 279 ~~~~~~lDE~~~l~~~---~~l~~~~~~~R~~g~~~~~~~Qs~~ql~ 322 (437)
T 1e9r_A 279 RRLWLFIDELASLEKL---ASLADALTKGRKAGLRVVAGLQSTSQLD 322 (437)
T ss_dssp CCEEEEESCGGGSCBC---SSHHHHHHHCTTTTEEEEEEESCHHHHH
T ss_pred ccEEEEEEcccccccc---hhHHHHHHHHhccCCEEEEEecCHHHHH
Confidence 3568999998765431 2466777787888999999999998764
No 228
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=55.81 E-value=16 Score=29.86 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=32.5
Q ss_pred HHHHHHhhCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChhH
Q psy4761 70 SVAVTMMHSPLLLILDEPT----------AGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIEE 122 (131)
Q Consensus 70 ~iaral~~~p~llilDEPt----------~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~~ 122 (131)
.+..|--..|.+|++||-- ..+.......++..+...... +..||.+|+..+.
T Consensus 289 ~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (489)
T ss_dssp HHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred HHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence 3455566788999999971 222234445566666554433 5667778887654
No 229
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.77 E-value=41 Score=27.24 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=37.2
Q ss_pred HHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHhh----hCCcEEEEEEcChhHHh
Q psy4761 68 RISVAVTMMHSPLLLILDEPTA----------GLDPLISDTIWQHLRTLS----ATGVTCIITTHYIEEAR 124 (131)
Q Consensus 68 rl~iaral~~~p~llilDEPt~----------gLD~~~~~~i~~~l~~~~----~~g~tvi~vtH~~~~~~ 124 (131)
|-.+..|-.+.|.|+++||--+ +-|......+..+|.++- ..+.-||.+|+.++.+.
T Consensus 264 r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD 334 (437)
T 4b4t_L 264 REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD 334 (437)
T ss_dssp HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC
T ss_pred HHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC
Confidence 4456666678999999999842 223344445556666553 23567899999876553
No 230
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=55.74 E-value=17 Score=26.71 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=28.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
+.+++++||--- +|+... +.+++++..|..||+..++.
T Consensus 101 ~~dvViIDEaQF-~~~~~V----~~l~~l~~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIV----EVVQVLANRGYRVIVAGLDQ 138 (214)
T ss_dssp SCCEEEECCGGG-SCTTHH----HHHHHHHHTTCEEEEEECSB
T ss_pred CCCEEEEECccc-CCHHHH----HHHHHHhhCCCEEEEEeccc
Confidence 579999999866 665432 55666666699999999954
No 231
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=55.65 E-value=12 Score=26.23 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=27.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
+-..+|+| +|.++...+.+.+.++++......-|++||-
T Consensus 34 ~~~~iLiD---~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~ 72 (233)
T 3q6v_A 34 TDGITIIG---ATWTPETAETLYKEIRKVSPLPINEVINTNY 72 (233)
T ss_dssp SSCEEEES---CCSSHHHHHHHHHHHHHHCCCCEEEEECSSS
T ss_pred CCeEEEEE---CCCCHHHHHHHHHHHHHhcCCCcEEEEECCC
Confidence 34677888 4666777778888887764445666788873
No 232
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=54.87 E-value=19 Score=26.16 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=28.7
Q ss_pred HHHHHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHhhh----C--CcEEEEEEcChhHHh
Q psy4761 71 VAVTMMHSPLLLILDEPTA-----GLDPLISDTIWQHLRTLSA----T--GVTCIITTHYIEEAR 124 (131)
Q Consensus 71 iaral~~~p~llilDEPt~-----gLD~~~~~~i~~~l~~~~~----~--g~tvi~vtH~~~~~~ 124 (131)
+..+...++.+|++||.-. ..++.....+.+.|.++.+ . +..||.+|+..+.+.
T Consensus 117 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~ 181 (272)
T 1d2n_A 117 FDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ 181 (272)
T ss_dssp HHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHH
T ss_pred HHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcc
Confidence 4444456799999999411 1112223345555544422 2 234666777775544
No 233
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.83 E-value=16 Score=29.46 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=34.9
Q ss_pred HHHHHHHhhCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHhh----hCCcEEEEEEcChhHH
Q psy4761 69 ISVAVTMMHSPLLLILDEPTAG----------LDPLISDTIWQHLRTLS----ATGVTCIITTHYIEEA 123 (131)
Q Consensus 69 l~iaral~~~p~llilDEPt~g----------LD~~~~~~i~~~l~~~~----~~g~tvi~vtH~~~~~ 123 (131)
-.+..|-...|.++++||--+- -|......+..+|.++- ..+..||.+|+.++.+
T Consensus 232 ~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~L 300 (405)
T 4b4t_J 232 ELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL 300 (405)
T ss_dssp HHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSS
T ss_pred HHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhC
Confidence 3455555678999999997432 23344445556665552 2367789999877543
No 234
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=54.24 E-value=34 Score=20.71 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=23.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+|+++++|--..+.|- ..+.+.+++.. .+..+|++|.
T Consensus 46 ~~~dlil~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~ 83 (120)
T 1tmy_A 46 LKPDIVTMDITMPEMNG---IDAIKEIMKID-PNAKIIVCSA 83 (120)
T ss_dssp HCCSEEEEECSCGGGCH---HHHHHHHHHHC-TTCCEEEEEC
T ss_pred cCCCEEEEeCCCCCCcH---HHHHHHHHhhC-CCCeEEEEeC
Confidence 57999999987766653 23445555432 2344555554
No 235
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=54.20 E-value=23 Score=25.98 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=30.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++++++||.- .++......+.+.+.+.. .+..+|++|.+..
T Consensus 109 ~~~~vliiDe~~-~l~~~~~~~L~~~le~~~-~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEAD-ALTQDAQQALRRTMEMFS-SNVRFILSCNYSS 151 (327)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred CCCeEEEEeCCC-cCCHHHHHHHHHHHHhcC-CCCeEEEEeCCcc
Confidence 468999999964 466777777777776542 3566777777653
No 236
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=54.08 E-value=36 Score=21.02 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=25.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+|+++|+|--..+.|- ..+.+.+++.. .+..||++|...
T Consensus 45 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~~ 84 (134)
T 3f6c_A 45 LKPDIVIIDVDIPGVNG---IQVLETLRKRQ-YSGIIIIVSAKN 84 (134)
T ss_dssp HCCSEEEEETTCSSSCH---HHHHHHHHHTT-CCSEEEEEECC-
T ss_pred cCCCEEEEecCCCCCCh---HHHHHHHHhcC-CCCeEEEEeCCC
Confidence 68999999998888774 33444555432 245566665543
No 237
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=53.71 E-value=22 Score=26.48 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=30.4
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 78 SPLLLILDEPTAGLD-PLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 78 ~p~llilDEPt~gLD-~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
+++++++||.-. +. ......+...+.+.. .+..+|++|+...
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYS-SNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHG-GGCEEEEEESSGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcc
Confidence 789999999854 44 666667777776653 3567888888765
No 238
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=52.95 E-value=20 Score=26.31 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=26.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
+-..+|.|= |.++...+.+.+.+++......+-|+.||-
T Consensus 83 ~~~~ilIDt---g~~~~~~~~l~~~i~~~~~~~I~~Ii~TH~ 121 (270)
T 4eyb_A 83 GGRVLVVDT---AWTDDQTAQILNWIKQEINLPVALAVVTHA 121 (270)
T ss_dssp TTEEEEESC---CSSHHHHHHHHHHHHHHTCCCEEEEEECSS
T ss_pred CCEEEEEeC---CCCHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 445777883 457888888888887754334555777883
No 239
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=52.46 E-value=41 Score=26.22 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh--hCCcEEEEEEcC
Q psy4761 63 GGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS--ATGVTCIITTHY 119 (131)
Q Consensus 63 ~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~--~~g~tvi~vtH~ 119 (131)
|..-=.+++..+|+..|+++++=|- ..|. +.+.+.+++.. .++.+||+++.-
T Consensus 170 GR~aG~lAl~a~lA~ga~~iliPE~--~~~~---~~i~~~i~~~~~~gk~~~iIvvaEG 223 (319)
T 1zxx_A 170 GRNCGDIAMRVGVACGADAIVIPER--PYDV---EEIANRLKQAQESGKDHGLVVVAEG 223 (319)
T ss_dssp CTTCCHHHHHHHHHTTCSEEECTTS--CCCH---HHHHHHHHHHHHTTCCCEEEEEETT
T ss_pred CCCHHHHHHHHHHhcCCCEEEeCCC--CCCH---HHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 3344478999999999999999543 3343 45666676644 346788888764
No 240
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.25 E-value=24 Score=28.91 Aligned_cols=57 Identities=28% Similarity=0.341 Sum_probs=37.0
Q ss_pred HHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHhh----hCCcEEEEEEcChhHHh
Q psy4761 68 RISVAVTMMHSPLLLILDEPTA----------GLDPLISDTIWQHLRTLS----ATGVTCIITTHYIEEAR 124 (131)
Q Consensus 68 rl~iaral~~~p~llilDEPt~----------gLD~~~~~~i~~~l~~~~----~~g~tvi~vtH~~~~~~ 124 (131)
|-.+..|-...|.|+++||--+ +-+......+..+|.++- ..+.-||.+|+.++.+.
T Consensus 265 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LD 335 (437)
T 4b4t_I 265 RQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD 335 (437)
T ss_dssp HHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCC
T ss_pred HHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcC
Confidence 4455566667899999999732 223344555666665542 23677899999887654
No 241
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.16 E-value=17 Score=26.59 Aligned_cols=42 Identities=10% Similarity=0.179 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
+++++++||.- .++......+.+.+.+. ..+..+|++|++..
T Consensus 107 ~~~viiiDe~~-~l~~~~~~~L~~~le~~-~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEAD-SMTAGAQQALRRTMELY-SNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHT-TTTEEEEEEESCGG
T ss_pred CceEEEEECcc-cCCHHHHHHHHHHHhcc-CCCceEEEEeCChh
Confidence 48999999963 35666666677777654 24567888887754
No 242
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=51.88 E-value=42 Score=21.27 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=24.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
..|+++|+|--..+.|- ..+.+.+++.. .+..||++|..
T Consensus 48 ~~~dlvllD~~lp~~~g---~~l~~~l~~~~-~~~~ii~ls~~ 86 (141)
T 3cu5_A 48 HPPNVLLTDVRMPRMDG---IELVDNILKLY-PDCSVIFMSGY 86 (141)
T ss_dssp SCCSEEEEESCCSSSCH---HHHHHHHHHHC-TTCEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhhC-CCCcEEEEeCC
Confidence 57999999988877764 34455555432 34555555543
No 243
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=51.86 E-value=43 Score=32.05 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=34.7
Q ss_pred HHHHHHHHh--hCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHh----hhCCcEEEEEEcCh
Q psy4761 68 RISVAVTMM--HSPLLLILDEPTAGLDPL-------------ISDTIWQHLRTL----SATGVTCIITTHYI 120 (131)
Q Consensus 68 rl~iaral~--~~p~llilDEPt~gLD~~-------------~~~~i~~~l~~~----~~~g~tvi~vtH~~ 120 (131)
-+.+++.++ .+|+++++|..++=.... ..+.+.+.++++ ++.|++||+++|-.
T Consensus 449 ~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~ 520 (1706)
T 3cmw_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (1706)
T ss_dssp HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEE
T ss_pred HHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 345566554 579999999988765411 223345555555 34599999999854
No 244
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=51.82 E-value=28 Score=22.98 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=25.5
Q ss_pred hCCCEEE--EeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 77 HSPLLLI--LDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 77 ~~p~lli--lDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
.++++++ +| +++ .......+.++.+.+..++++.|..+...
T Consensus 80 ~~~~~~i~v~D-~~~------~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 80 EKPDLVVNIVD-ATA------LERNLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp HCCSEEEEEEE-TTC------HHHHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred CCCCEEEEEec-CCc------hhHhHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 3777655 44 222 22334455555556889999999988764
No 245
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=51.81 E-value=17 Score=27.62 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=27.1
Q ss_pred CCEEEEeCCCCCCC-----HH---------------HHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 79 PLLLILDEPTAGLD-----PL---------------ISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 79 p~llilDEPt~gLD-----~~---------------~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
-+++++|=|++|+. +. .+..+++.+.++.+.|..++++|+.+
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 48999999998854 21 11344454545445677888988765
No 246
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=49.71 E-value=25 Score=28.34 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcE--EEEEEc
Q psy4761 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVT--CIITTH 118 (131)
Q Consensus 61 LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~t--vi~vtH 118 (131)
|+.++.+++.-|...+.+.+++|.|+|. +++. .+...++++. +.|.. +|++-+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~---~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVN---YIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHH---HHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHH---HHHHHHHHHHHHhCCCCeEEEEec
Confidence 7888888888888878888899998874 5543 3555555554 34677 877765
No 247
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=49.70 E-value=45 Score=20.89 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=23.4
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-..|+++|+|--..+.|- ..+.+.+++.. .+..+|++|.
T Consensus 42 ~~~~dlvl~D~~lp~~~g---~~~~~~l~~~~-~~~~ii~~s~ 80 (139)
T 2jk1_A 42 EEWVQVIICDQRMPGRTG---VDFLTEVRERW-PETVRIIITG 80 (139)
T ss_dssp HSCEEEEEEESCCSSSCH---HHHHHHHHHHC-TTSEEEEEES
T ss_pred cCCCCEEEEeCCCCCCcH---HHHHHHHHHhC-CCCcEEEEeC
Confidence 357999999988777774 23444554432 2344444443
No 248
>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A
Probab=48.76 E-value=24 Score=25.43 Aligned_cols=30 Identities=13% Similarity=0.320 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 89 AGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 89 ~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
+|||+.....+.+++....++|..+.+++=
T Consensus 31 ~gLdp~~a~al~~m~~aA~~~Gi~l~v~sG 60 (179)
T 1xp2_A 31 GGMYKITSDKTRNVIKKMAKEGIYLCVAQG 60 (179)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 689999999999988888777887655553
No 249
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=48.55 E-value=49 Score=25.74 Aligned_cols=52 Identities=8% Similarity=0.119 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh--hCCcEEEEEEcC
Q psy4761 63 GGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS--ATGVTCIITTHY 119 (131)
Q Consensus 63 ~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~--~~g~tvi~vtH~ 119 (131)
|..-=.+++..+|+..|+++++=|- ..|. +.+.+.+++-. .++.+||+++.-
T Consensus 171 GR~aG~lAl~a~lA~ga~~iliPE~--~~~~---~~i~~~i~~~~~~gk~~~iIvvaEG 224 (320)
T 1pfk_A 171 GRYCGDLTLAAAIAGGCEFVVVPEV--EFSR---EDLVNEIKAGIAKGKKHAIVAITEH 224 (320)
T ss_dssp CTTCCHHHHHHHHHTTCSEEECTTS--CCCH---HHHHHHHHHHHHTTCSCEEEEEESS
T ss_pred CcCHHHHHHHHHHhcCCCEEEeCCC--CCCH---HHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 3333478999999999999999542 2343 45666666543 246788888753
No 250
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.52 E-value=34 Score=27.72 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=35.5
Q ss_pred HHHHHHHHhhCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHhh----hCCcEEEEEEcChhHHh
Q psy4761 68 RISVAVTMMHSPLLLILDEPT----------AGLDPLISDTIWQHLRTLS----ATGVTCIITTHYIEEAR 124 (131)
Q Consensus 68 rl~iaral~~~p~llilDEPt----------~gLD~~~~~~i~~~l~~~~----~~g~tvi~vtH~~~~~~ 124 (131)
|-.+..|-...|.|+++||-- .+-+......+..+|..+- ..+.-||.+|+.++.+.
T Consensus 264 r~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD 334 (434)
T 4b4t_M 264 RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334 (434)
T ss_dssp HHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC
T ss_pred HHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC
Confidence 445556667889999999951 1223334445555565552 23567888998876543
No 251
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.40 E-value=50 Score=26.66 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=34.3
Q ss_pred HHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHhh----hCCcEEEEEEcChhHH
Q psy4761 70 SVAVTMMHSPLLLILDEP----------TAGLDPLISDTIWQHLRTLS----ATGVTCIITTHYIEEA 123 (131)
Q Consensus 70 ~iaral~~~p~llilDEP----------t~gLD~~~~~~i~~~l~~~~----~~g~tvi~vtH~~~~~ 123 (131)
.+..|-...|.++++||- .++-|....+.+.++|..+- ..|.-||.+|+.++.+
T Consensus 257 lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 257 VFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp HHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred HHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 445555678999999997 22334444445555555542 2467889999877543
No 252
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=47.76 E-value=47 Score=20.51 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=24.0
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-..|+++|+|--..+.|- ..+.+.+++.. ....||++|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~ 83 (136)
T 1mvo_A 45 TEKPDLIVLDVMLPKLDG---IEVCKQLRQQK-LMFPILMLTA 83 (136)
T ss_dssp HHCCSEEEEESSCSSSCH---HHHHHHHHHTT-CCCCEEEEEC
T ss_pred hcCCCEEEEecCCCCCCH---HHHHHHHHcCC-CCCCEEEEEC
Confidence 358999999988877774 23445555432 2344555544
No 253
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=47.63 E-value=43 Score=20.03 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=24.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
.+|+++++|--..+.|- ..+.+.+++.. .+..||++|..
T Consensus 44 ~~~dlvl~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~ 82 (116)
T 3a10_A 44 GNYDLVILDIEMPGISG---LEVAGEIRKKK-KDAKIILLTAY 82 (116)
T ss_dssp SCCSEEEECSCCSSSCH---HHHHHHHHHHC-TTCCEEEEESC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHccC-CCCeEEEEECC
Confidence 57999999988777664 23445555432 24445555543
No 254
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=47.35 E-value=52 Score=20.91 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=24.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
.+|+++|+|--..+.|- ..+.+.+++.. .+..||++|..
T Consensus 60 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~ 98 (152)
T 3eul_A 60 HLPDVALLDYRMPGMDG---AQVAAAVRSYE-LPTRVLLISAH 98 (152)
T ss_dssp HCCSEEEEETTCSSSCH---HHHHHHHHHTT-CSCEEEEEESC
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhcC-CCCeEEEEEcc
Confidence 68999999988777764 33444454432 24455555543
No 255
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=47.30 E-value=31 Score=24.28 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=31.5
Q ss_pred hCCCEEEEeCCCCCCCH-------------------HHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 77 HSPLLLILDEPTAGLDP-------------------LISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~-------------------~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.||+|+++|=|...--+ ...+.+.+.++++.+.|..|+++.-.++.
T Consensus 26 ~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~I~d 90 (178)
T 1gml_A 26 KNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISD 90 (178)
T ss_dssp ESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCBCH
T ss_pred ccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEECCcccH
Confidence 68999999988543211 13445677777777778899988766543
No 256
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=46.90 E-value=48 Score=20.37 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=25.2
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcC
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHY 119 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~ 119 (131)
-.+|+++|+|--..+.|- ..+.+.+++.. ..+..||++|..
T Consensus 45 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 45 AHPPDVLISDVNMDGMDG---YALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HSCCSEEEECSSCSSSCH---HHHHHHHHHSTTTTTCCEEEEESC
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhCCccCCCCEEEEeCC
Confidence 368999999988777664 33555555532 124555555543
No 257
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=46.65 E-value=54 Score=20.85 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=24.7
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
-.+|+++|+|--..+.|- ..+.+.+++.. .+..||++|..
T Consensus 64 ~~~~dlii~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~ls~~ 103 (150)
T 4e7p_A 64 KESVDIAILDVEMPVKTG---LEVLEWIRSEK-LETKVVVVTTF 103 (150)
T ss_dssp TSCCSEEEECSSCSSSCH---HHHHHHHHHTT-CSCEEEEEESC
T ss_pred ccCCCEEEEeCCCCCCcH---HHHHHHHHHhC-CCCeEEEEeCC
Confidence 467999999988777664 33444555432 34555555543
No 258
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=46.14 E-value=39 Score=26.95 Aligned_cols=52 Identities=15% Similarity=0.042 Sum_probs=38.3
Q ss_pred HHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 71 VAVTMMHSP--LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 71 iaral~~~p--~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+..|+-... .|||.|+-+..-|+..+..+.+++....+.|..|.++|.+-+.
T Consensus 299 V~~Ale~GAVetLLI~d~l~r~~d~~~r~~~~~L~e~~~~~Gg~V~ivs~~~~~ 352 (390)
T 3mca_B 299 VLKAFELGAIGELLISDSLFRSSDIATRKKWVSLVEGVKEINCPVYIFSSLHES 352 (390)
T ss_dssp HHHHHHTTCBSSCEEEETTCCCSCHHHHHHHHHHHHHHHHTTCCEEEECTTSHH
T ss_pred HHHHHHcCCCeEEEEecccccCCChhHHHHHHHHHHHHHhcCCEEEEECCCCCc
Confidence 344444443 6999999998889988888887777666778888888876543
No 259
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=45.83 E-value=19 Score=25.05 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=24.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 79 PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 79 p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
-..+|+| +|.++...+.+.+.++++.......|+.||-
T Consensus 32 ~~~iLiD---~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~ 69 (227)
T 3iog_A 32 KGVTVVG---ATWTPDTARELHKLIKRVSRKPVLEVINTNY 69 (227)
T ss_dssp SCEEEES---CCSSHHHHHHHHHHHHTTCCSCEEEEECSSS
T ss_pred CeEEEEE---CCCChHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 3567777 4556667777777777643334566788883
No 260
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=45.64 E-value=66 Score=24.04 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=30.3
Q ss_pred HHHHHHhhCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHhh-h-CCcEEEEEEcChhH
Q psy4761 70 SVAVTMMHSPLLLILDEPTAG----------LDPLISDTIWQHLRTLS-A-TGVTCIITTHYIEE 122 (131)
Q Consensus 70 ~iaral~~~p~llilDEPt~g----------LD~~~~~~i~~~l~~~~-~-~g~tvi~vtH~~~~ 122 (131)
.+..|-..+|.+|++||--+= ........++..+..+. . .+..||.+|+..+.
T Consensus 102 ~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 102 LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 166 (322)
T ss_dssp HHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG
T ss_pred HHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhh
Confidence 344555678999999997421 11223444555555443 2 35566668877544
No 261
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=45.33 E-value=51 Score=20.16 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=23.8
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
-..|+++|+|--..+.|- ..+.+.+++.. .+..||++|..
T Consensus 45 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~ 84 (126)
T 1dbw_A 45 DVRNGVLVTDLRMPDMSG---VELLRNLGDLK-INIPSIVITGH 84 (126)
T ss_dssp GCCSEEEEEECCSTTSCH---HHHHHHHHHTT-CCCCEEEEECT
T ss_pred cCCCCEEEEECCCCCCCH---HHHHHHHHhcC-CCCCEEEEECC
Confidence 357999999987777764 23444454432 34445555543
No 262
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=45.32 E-value=19 Score=23.97 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 61 LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
.+.++---.+-+..|..+.+++++.+|...+.....+.+.+.+.... .+..+|++.+.
T Consensus 59 ~~~~~l~~~~~s~slF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~-~~~~lvi~~~k 116 (140)
T 1jql_B 59 TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLH-DDLLLIVRGNK 116 (140)
T ss_dssp CCHHHHHHHHHCCCTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCC-SSCCEEEECSS
T ss_pred CCHHHHHHHHhcCCCCCCCEEEEEECCCCCCChHHHHHHHHHHhcCC-CCEEEEEEeCC
Confidence 34443332233334467889999999987776556666766665543 23444444343
No 263
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=45.10 E-value=41 Score=26.19 Aligned_cols=63 Identities=13% Similarity=-0.018 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHHh--h-CCCEEEEeCCCCCCCHH-------HHHHHHHHHHHhhh-CCcEEEEEEcChhHHh
Q psy4761 60 QVSGGQQRRISVAVTMM--H-SPLLLILDEPTAGLDPL-------ISDTIWQHLRTLSA-TGVTCIITTHYIEEAR 124 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~--~-~p~llilDEPt~gLD~~-------~~~~i~~~l~~~~~-~g~tvi~vtH~~~~~~ 124 (131)
.+|-. +..+.++.+. + +++++++|--..=-... ....+...|+.+++ .|++||+++|--...+
T Consensus 137 ~~si~--~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e 210 (338)
T 4a1f_A 137 YVRIE--QIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQLNRSLE 210 (338)
T ss_dssp TCCHH--HHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGG
T ss_pred CCcHH--HHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCcccc
Confidence 34533 3445555554 3 68999999764422221 23456677777764 4999999999655544
No 264
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=45.03 E-value=63 Score=30.91 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=34.6
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHh---h-hCCcEEEEEEcC
Q psy4761 67 RRISVAVTMM--HSPLLLILDEPTAGLD-P------------LISDTIWQHLRTL---S-ATGVTCIITTHY 119 (131)
Q Consensus 67 qrl~iaral~--~~p~llilDEPt~gLD-~------------~~~~~i~~~l~~~---~-~~g~tvi~vtH~ 119 (131)
+....++.++ .+|+++++|+..+-.. . ...+.+.+.++++ . +.|++||+++|-
T Consensus 797 ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql 868 (1706)
T 3cmw_A 797 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 4455555544 5899999999887552 1 1233455555554 3 459999999984
No 265
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=44.84 E-value=42 Score=20.65 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=19.1
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-.+|+++|+|--..+.|. ..+.+.+++.. .+..||++|.
T Consensus 49 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~-~~~~ii~~t~ 87 (130)
T 3eod_A 49 GFTPDLMICDIAMPRMNG---LKLLEHIRNRG-DQTPVLVISA 87 (130)
T ss_dssp TCCCSEEEECCC-----C---HHHHHHHHHTT-CCCCEEEEEC
T ss_pred cCCCCEEEEecCCCCCCH---HHHHHHHHhcC-CCCCEEEEEc
Confidence 457999999976655442 33444454432 2344444443
No 266
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.80 E-value=39 Score=27.82 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=36.2
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHhh----hCCcEEEEEEcChhHH
Q psy4761 68 RISVAVTMMHSPLLLILDEPTAGL----------DPLISDTIWQHLRTLS----ATGVTCIITTHYIEEA 123 (131)
Q Consensus 68 rl~iaral~~~p~llilDEPt~gL----------D~~~~~~i~~~l~~~~----~~g~tvi~vtH~~~~~ 123 (131)
|-.+..|-...|.++++||--+-. +......+..+|.++- ..+.-||.+|+.++.+
T Consensus 292 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 292 RELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp HHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred HHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 455666777889999999985322 2334445566666653 2356778888876543
No 267
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=44.31 E-value=83 Score=23.22 Aligned_cols=53 Identities=11% Similarity=0.055 Sum_probs=33.7
Q ss_pred HHHHhhCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHhhh-CCcEEEEEEcChhHHhc
Q psy4761 72 AVTMMHSPLLLILDEPTAG-------LDPLISDTIWQHLRTLSA-TGVTCIITTHYIEEARH 125 (131)
Q Consensus 72 aral~~~p~llilDEPt~g-------LD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~~~~~ 125 (131)
.+++-...+++.|=|+... ++......+...++++.+ .|.. +++..+.+.+..
T Consensus 50 ~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~-liInd~~~lA~~ 110 (243)
T 3o63_A 50 EAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGAL-FAVNDRADIARA 110 (243)
T ss_dssp HHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCE-EEEESCHHHHHH
T ss_pred HHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCE-EEEeCHHHHHHH
Confidence 3456677888888888754 777777667777777764 3544 444455555543
No 268
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=44.20 E-value=20 Score=29.80 Aligned_cols=47 Identities=11% Similarity=0.268 Sum_probs=34.8
Q ss_pred hhCCCEEEEeCC-------------CCCCCH------HHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 76 MHSPLLLILDEP-------------TAGLDP------LISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 76 ~~~p~llilDEP-------------t~gLD~------~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+.||+|+++|-| .+..+. ...+.+...++++.+.|..++++.-+.+.
T Consensus 231 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~ 296 (545)
T 1a6d_A 231 VKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDD 296 (545)
T ss_dssp EEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCH
T ss_pred ecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccH
Confidence 689999999999 444433 23445677888887889999999877654
No 269
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=44.13 E-value=51 Score=23.30 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=29.5
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh--CCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA--TGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~--~g~tvi~vtH 118 (131)
..+++++|+..+.+.++......+..+...+.. ...++|+.+|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 347899999999888888666655555544322 1257888888
No 270
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=44.05 E-value=56 Score=20.28 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=24.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
.+|+++|+|--..+.|- ..+.+.+++. ..+..||++|..
T Consensus 48 ~~~dlvilD~~lp~~~g---~~~~~~l~~~-~~~~~ii~ls~~ 86 (133)
T 3b2n_A 48 YNPNVVILDIEMPGMTG---LEVLAEIRKK-HLNIKVIIVTTF 86 (133)
T ss_dssp HCCSEEEECSSCSSSCH---HHHHHHHHHT-TCSCEEEEEESC
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHHH-CCCCcEEEEecC
Confidence 58999999987777663 2344455442 234556665543
No 271
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=44.00 E-value=25 Score=30.56 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=23.5
Q ss_pred HHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4761 71 VAVTMMHS-PLLLILDEPTAGLDPLISDTIWQHLRT 105 (131)
Q Consensus 71 iaral~~~-p~llilDEPt~gLD~~~~~~i~~~l~~ 105 (131)
+..++-.. +.++++||.- .+++.....+.+.+.+
T Consensus 652 l~~~~~~~~~~vl~lDEi~-~l~~~~~~~Ll~~l~~ 686 (854)
T 1qvr_A 652 LTEAVRRRPYSVILFDEIE-KAHPDVFNILLQILDD 686 (854)
T ss_dssp HHHHHHHCSSEEEEESSGG-GSCHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCeEEEEeccc-ccCHHHHHHHHHHhcc
Confidence 33444444 5899999994 4788777777777754
No 272
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=43.95 E-value=30 Score=22.71 Aligned_cols=40 Identities=15% Similarity=-0.039 Sum_probs=28.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
+..+|++||.- .+++..+..+.+.+... ..+..+|.+|+.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESS
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCc
Confidence 66899999995 57888888888888432 234556666653
No 273
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=43.94 E-value=53 Score=20.02 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=22.4
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-.+|+++|+|=-..+.|- ..+.+.+++. .+..||++|.
T Consensus 44 ~~~~dlii~D~~~p~~~g---~~~~~~lr~~--~~~~ii~~t~ 81 (120)
T 3f6p_A 44 ELQPDLILLDIMLPNKDG---VEVCREVRKK--YDMPIIMLTA 81 (120)
T ss_dssp TTCCSEEEEETTSTTTHH---HHHHHHHHTT--CCSCEEEEEE
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCCCEEEEEC
Confidence 468999999987777653 3344444432 2444554443
No 274
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=43.84 E-value=53 Score=19.94 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=24.1
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-..|+++|+|--..+.|- ..+.+.+++. ..+..||++|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g---~~~~~~l~~~-~~~~~ii~~s~ 83 (124)
T 1srr_A 45 KERPDLVLLDMKIPGMDG---IEILKRMKVI-DENIRVIIMTA 83 (124)
T ss_dssp HHCCSEEEEESCCTTCCH---HHHHHHHHHH-CTTCEEEEEES
T ss_pred ccCCCEEEEecCCCCCCH---HHHHHHHHHh-CCCCCEEEEEc
Confidence 368999999987777764 2344445443 23455555554
No 275
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=43.61 E-value=80 Score=23.78 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=28.1
Q ss_pred HHHHHHhhCCCEEEEeCCCC-------CCCHHHHHHHHHHHHHhh-----hCCcEEEEEEcChh
Q psy4761 70 SVAVTMMHSPLLLILDEPTA-------GLDPLISDTIWQHLRTLS-----ATGVTCIITTHYIE 121 (131)
Q Consensus 70 ~iaral~~~p~llilDEPt~-------gLD~~~~~~i~~~l~~~~-----~~g~tvi~vtH~~~ 121 (131)
.+..|-..+|.+|++||.-+ +......+.+.+++..+. ..+..||.+|+..+
T Consensus 97 lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 97 LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp HHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 34445567899999999842 112222233333344332 13456677787653
No 276
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=43.58 E-value=58 Score=20.31 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=23.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-hhCCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~-~~~g~tvi~vtH 118 (131)
.+|+++|+|--..| ......+.+.+++. ...+..||++|.
T Consensus 49 ~~~dlvi~D~~l~~--~~~g~~~~~~l~~~~~~~~~~ii~ls~ 89 (140)
T 3lua_A 49 DSITLIIMDIAFPV--EKEGLEVLSAIRNNSRTANTPVIIATK 89 (140)
T ss_dssp CCCSEEEECSCSSS--HHHHHHHHHHHHHSGGGTTCCEEEEES
T ss_pred CCCcEEEEeCCCCC--CCcHHHHHHHHHhCcccCCCCEEEEeC
Confidence 57999999965541 23345566666662 123444555554
No 277
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=43.56 E-value=61 Score=20.60 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=24.1
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-..|+++|+|--..+.|- ..+.+.+++.. .+..||++|.
T Consensus 49 ~~~~dlii~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~ls~ 87 (153)
T 3cz5_A 49 ETTPDIVVMDLTLPGPGG---IEATRHIRQWD-GAARILIFTM 87 (153)
T ss_dssp TTCCSEEEECSCCSSSCH---HHHHHHHHHHC-TTCCEEEEES
T ss_pred cCCCCEEEEecCCCCCCH---HHHHHHHHHhC-CCCeEEEEEC
Confidence 357999999988777663 34455555532 2444555554
No 278
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=43.03 E-value=59 Score=20.26 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=22.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
.+|+++|+|- ..+. ....+.+.+++.. .+..||++|..
T Consensus 47 ~~~dlvi~d~-~~~~---~g~~~~~~l~~~~-~~~pii~ls~~ 84 (142)
T 2qxy_A 47 EKIDLVFVDV-FEGE---ESLNLIRRIREEF-PDTKVAVLSAY 84 (142)
T ss_dssp SCCSEEEEEC-TTTH---HHHHHHHHHHHHC-TTCEEEEEESC
T ss_pred cCCCEEEEeC-CCCC---cHHHHHHHHHHHC-CCCCEEEEECC
Confidence 6799999997 5442 2334455555432 24555555543
No 279
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=42.57 E-value=56 Score=19.90 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=25.6
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~ 119 (131)
.+|+++|+|--..+.|- ..+.+.+++.. ..+..||++|..
T Consensus 46 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 46 RGYDAVFIDLNLPDTSG---LALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp SCCSEEEEESBCSSSBH---HHHHHHHHHSCCSSCCEEEEEECC
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhhhccCCCCEEEEECC
Confidence 67999999988877764 34555555532 234556666543
No 280
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=42.48 E-value=47 Score=24.92 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=29.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh----------hCCcEEEEEEcC
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLS----------ATGVTCIITTHY 119 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~----------~~g~tvi~vtH~ 119 (131)
+..+|++||.- .++......+...+.+.. ..+..||.+|+.
T Consensus 96 ~~g~L~LDEi~-~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 96 DGGTLFLDEIG-DISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp TTSEEEEESCT-TCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred CCCEEEEeccc-cCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 56899999965 467777778887776532 124668888875
No 281
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=42.21 E-value=67 Score=20.67 Aligned_cols=37 Identities=11% Similarity=0.124 Sum_probs=23.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
+|+++|+|--..+.|- ..+.+.|++.. .+..||++|.
T Consensus 83 ~~dliilD~~l~~~~g---~~~~~~lr~~~-~~~~ii~ls~ 119 (157)
T 3hzh_A 83 NIDIVTLXITMPKMDG---ITCLSNIMEFD-KNARVIMISA 119 (157)
T ss_dssp GCCEEEECSSCSSSCH---HHHHHHHHHHC-TTCCEEEEES
T ss_pred CCCEEEEeccCCCccH---HHHHHHHHhhC-CCCcEEEEec
Confidence 7899999988877774 34555555543 2344555554
No 282
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=42.15 E-value=17 Score=30.41 Aligned_cols=42 Identities=17% Similarity=0.359 Sum_probs=33.0
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+.||+|+++|.+.+. .+.+...+.++.+.|..++++..+.+.
T Consensus 213 ~en~~Ill~d~~Is~-----~~~l~~~le~i~~~g~~lvii~~~I~~ 254 (543)
T 1we3_A 213 LEDAFILIVEKKVSN-----VRELLPILEQVAQTGKPLLIIAEDVEG 254 (543)
T ss_dssp EEEEEEEEESSCBCC-----HHHHHHHHHHHHTTTCCEEEEESCBCH
T ss_pred ecCceEEEECCCcCC-----HHHHHHHHHHHHhcCCCEEEEcCCccH
Confidence 468999999998664 345777888877789999999887653
No 283
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=42.11 E-value=0.12 Score=38.65 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=24.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy4761 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEP 87 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~~~p~llilDEP 87 (131)
....|||||+|++.+++|+.++|++ +|++
T Consensus 166 ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 166 LLVEMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp HHHHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred HHHHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 3557899999999999999999987 6766
No 284
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=42.06 E-value=65 Score=20.48 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=25.7
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
-..|+++|+|-...+.|. ..+.+.+++.. .+..||++|...
T Consensus 49 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~-~~~~ii~ls~~~ 89 (154)
T 2rjn_A 49 GTSVQLVISDMRMPEMGG---EVFLEQVAKSY-PDIERVVISGYA 89 (154)
T ss_dssp TSCCSEEEEESSCSSSCH---HHHHHHHHHHC-TTSEEEEEECGG
T ss_pred cCCCCEEEEecCCCCCCH---HHHHHHHHHhC-CCCcEEEEecCC
Confidence 357999999998887764 23445555432 345566665543
No 285
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=41.76 E-value=62 Score=23.06 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=28.9
Q ss_pred HHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHhh----hCCcEEEEEEcChhHH
Q psy4761 71 VAVTMMHSPLLLILDEP----------TAGLDPLISDTIWQHLRTLS----ATGVTCIITTHYIEEA 123 (131)
Q Consensus 71 iaral~~~p~llilDEP----------t~gLD~~~~~~i~~~l~~~~----~~g~tvi~vtH~~~~~ 123 (131)
+..|-...|.++++||- +.+-.......+..++..+- ..+..||.+|+..+.+
T Consensus 97 ~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 97 FEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp HHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 44444556889999996 11111122233444444432 2356788888877543
No 286
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=41.72 E-value=61 Score=20.05 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=24.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
.+|+++|+|--..+.|- ..+.+.+++.. .+..||++|..
T Consensus 50 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~ 88 (137)
T 3hdg_A 50 HAPDVIITDIRMPKLGG---LEMLDRIKAGG-AKPYVIVISAF 88 (137)
T ss_dssp HCCSEEEECSSCSSSCH---HHHHHHHHHTT-CCCEEEECCCC
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhcC-CCCcEEEEecC
Confidence 68999999988777664 33444555432 34556655543
No 287
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=41.65 E-value=13 Score=27.42 Aligned_cols=43 Identities=14% Similarity=-0.009 Sum_probs=26.1
Q ss_pred CCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 78 SPLLLILDEPTAGLDPL----------------ISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~----------------~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
..+++++|=|++|+... ....+++.+.++.+.|..++++|..+
T Consensus 156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 35999999999986431 12445555555545677888888654
No 288
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=41.53 E-value=67 Score=24.15 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=30.9
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 71 VAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 71 iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
+..|...+.+.++| +.+.|++.....+.+.. .+-|..+++..|+.+++..
T Consensus 128 v~~A~~~GAD~VlL--i~a~l~~~~l~~l~~~a---~~lGl~~lvev~t~ee~~~ 177 (272)
T 3qja_A 128 IHEARAHGADMLLL--IVAALEQSVLVSMLDRT---ESLGMTALVEVHTEQEADR 177 (272)
T ss_dssp HHHHHHTTCSEEEE--EGGGSCHHHHHHHHHHH---HHTTCEEEEEESSHHHHHH
T ss_pred HHHHHHcCCCEEEE--ecccCCHHHHHHHHHHH---HHCCCcEEEEcCCHHHHHH
Confidence 34444567777776 22234554444443333 3458999999999998865
No 289
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=41.52 E-value=20 Score=27.24 Aligned_cols=43 Identities=9% Similarity=0.096 Sum_probs=29.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+.+++|+||.- .|.......+.+.+.+- ..+..+|++|++.+
T Consensus 107 ~~~kvviIdead-~l~~~a~naLLk~lEep-~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDAA-LLTDAAANALLKTLEEP-PAETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCGG-GBCHHHHHHHHHHHTSC-CTTEEEEEEESCGG
T ss_pred CCcEEEEECchh-hcCHHHHHHHHHHhcCC-CCCeEEEEEeCChH
Confidence 356999999974 36666666666665442 13567788998874
No 290
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=41.31 E-value=50 Score=24.21 Aligned_cols=62 Identities=8% Similarity=-0.000 Sum_probs=39.2
Q ss_pred cCCCCHHHHHHHHHHHHHh---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChhH
Q psy4761 58 CGQVSGGQQRRISVAVTMM---HSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIEE 122 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~---~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~~ 122 (131)
-..+..-+ +|+++..||. .+-+++++|+-. ++....+.+.++|+.+.- .+..+++|+.|-+.
T Consensus 98 ~~klnkK~-rrlAl~sALs~k~~~~~l~Vvd~~~--~~~~KTK~~~~~L~~lg~~~~~~~LiV~~~~~~ 163 (210)
T 3v2d_F 98 SYTLPKKV-RKKGLAMAVADRAREGKLLLVEAFA--GVNGKTKEFLAWAKEAGLDGSESVLLVTGNELV 163 (210)
T ss_dssp CCCCCHHH-HHHHHHHHHHHHHHTTCEEEESCCT--TCSSCHHHHHHHHHHTTCCSSSCEEEECSCHHH
T ss_pred eeeCCHHH-HHHHHHHHHHHHHhcCCEEEecccc--cCCccHHHHHHHHHHcCCCCCCceEEEeCChhH
Confidence 33454444 4678888886 456899999864 455456778888888742 23455666655433
No 291
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=41.29 E-value=79 Score=24.19 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=28.8
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCC----------HHHHHHHHHHHHHhh--hCCcEEEEEEcChh
Q psy4761 70 SVAVTMMHSPLLLILDEPTAGLD----------PLISDTIWQHLRTLS--ATGVTCIITTHYIE 121 (131)
Q Consensus 70 ~iaral~~~p~llilDEPt~gLD----------~~~~~~i~~~l~~~~--~~g~tvi~vtH~~~ 121 (131)
.+..|-..+|.+|++||--+-.. ......++..+..+. ..+..||.+|+..+
T Consensus 135 ~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 135 LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp HHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred HHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 34444456899999999753211 112333444444432 23566777888664
No 292
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=41.25 E-value=57 Score=19.63 Aligned_cols=38 Identities=24% Similarity=0.180 Sum_probs=24.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
.+|+++|+|--..+.|- ..+.+.+++ ..+..||++|..
T Consensus 45 ~~~dlvi~d~~l~~~~g---~~~~~~l~~--~~~~~ii~~s~~ 82 (122)
T 1zgz_A 45 QSVDLILLDINLPDENG---LMLTRALRE--RSTVGIILVTGR 82 (122)
T ss_dssp SCCSEEEEESCCSSSCH---HHHHHHHHT--TCCCEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCh---HHHHHHHHh--cCCCCEEEEECC
Confidence 57999999988777764 234444444 234556666543
No 293
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=40.89 E-value=29 Score=24.46 Aligned_cols=25 Identities=8% Similarity=0.008 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhh--CCcEEEEEEcCh
Q psy4761 96 SDTIWQHLRTLSA--TGVTCIITTHYI 120 (131)
Q Consensus 96 ~~~i~~~l~~~~~--~g~tvi~vtH~~ 120 (131)
.+++.+.+.++.+ .+.+|++|||..
T Consensus 128 ~~R~~~~l~~l~~~~~~~~vlvVsHg~ 154 (208)
T 2a6p_A 128 NDRADSAVALALEHMSSRDVLFVSHGH 154 (208)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEEEECHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEeCHH
Confidence 3456666776653 577899999975
No 294
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=40.79 E-value=63 Score=19.98 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=23.9
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-..|+++|+|--..+.|- ..+.+.+++.. .+..||++|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~ 83 (132)
T 3crn_A 45 NEFFNLALFXIKLPDMEG---TELLEKAHKLR-PGMKKIMVTG 83 (132)
T ss_dssp HSCCSEEEECSBCSSSBH---HHHHHHHHHHC-TTSEEEEEES
T ss_pred cCCCCEEEEecCCCCCch---HHHHHHHHhhC-CCCcEEEEec
Confidence 367999999987777664 23444454432 3455555554
No 295
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=40.79 E-value=72 Score=20.64 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=40.8
Q ss_pred HHHh-hCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 73 VTMM-HSPLLLILD-EPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 73 ral~-~~p~llilD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
..+. .+++.+|+| .-..-+|......+.+..+.++..|..++++.=..+...
T Consensus 36 ~~i~~~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l~Gi~p~va~ 89 (123)
T 3zxn_A 36 HNITGVAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVLTGIKPAVAI 89 (123)
T ss_dssp HHHTSSCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEEECCCHHHHH
T ss_pred HHHHhcCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 3443 478999999 778889999999999999988777888878776665543
No 296
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=40.31 E-value=30 Score=28.74 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=34.9
Q ss_pred hhCCCEEEEeCC-------------CCCCCH------HHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 76 MHSPLLLILDEP-------------TAGLDP------LISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 76 ~~~p~llilDEP-------------t~gLD~------~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+.||+|+++|-| .+..+. ...+.+...+.++.+.|..++++.-+.+.
T Consensus 232 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~ 297 (543)
T 1a6d_B 232 VKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDD 297 (543)
T ss_dssp EEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCH
T ss_pred ecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCH
Confidence 579999999999 444443 23344677888887889999999877654
No 297
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=40.25 E-value=60 Score=25.00 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=27.9
Q ss_pred HHHHHhhCCCEEEEeCCCC-------C---CCHHHHHHHHHHHHHhhh---CCcEEEEEEcChhHH
Q psy4761 71 VAVTMMHSPLLLILDEPTA-------G---LDPLISDTIWQHLRTLSA---TGVTCIITTHYIEEA 123 (131)
Q Consensus 71 iaral~~~p~llilDEPt~-------g---LD~~~~~~i~~~l~~~~~---~g~tvi~vtH~~~~~ 123 (131)
+..+-..+|.+|++||--. + ........+...+..... .+..||.+|+..+.+
T Consensus 200 ~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 265 (389)
T 3vfd_A 200 FAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQEL 265 (389)
T ss_dssp HHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGC
T ss_pred HHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhc
Confidence 3344456889999999831 1 122233344444444332 235567778765443
No 298
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=40.23 E-value=66 Score=20.04 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=24.2
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-..|+++|+|--..+.|- ..+.+.+++.. .+..||++|-
T Consensus 47 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~-~~~~ii~ls~ 85 (143)
T 3jte_A 47 CNSIDVVITDMKMPKLSG---MDILREIKKIT-PHMAVIILTG 85 (143)
T ss_dssp TTTCCEEEEESCCSSSCH---HHHHHHHHHHC-TTCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCcH---HHHHHHHHHhC-CCCeEEEEEC
Confidence 358999999988877764 23445555432 3455555554
No 299
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=40.10 E-value=55 Score=26.25 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHh--hCCC--EEEEeCCCC---CC---C-HHHHHHHHHHHHHhhh-CCcEEEEEEcC
Q psy4761 61 VSGGQQRRISVAVTMM--HSPL--LLILDEPTA---GL---D-PLISDTIWQHLRTLSA-TGVTCIITTHY 119 (131)
Q Consensus 61 LS~G~~qrl~iaral~--~~p~--llilDEPt~---gL---D-~~~~~~i~~~l~~~~~-~g~tvi~vtH~ 119 (131)
+|-.+- .+.++.+. ++++ ++++|--.. +- + ......+...|+.+++ .|++||+++|-
T Consensus 291 ~s~~~i--~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 359 (444)
T 3bgw_A 291 QSVNYI--WSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQL 359 (444)
T ss_dssp CBHHHH--HHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CCHHHH--HHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 555443 23344443 4799 999996532 11 1 1233455566666654 49999999994
No 300
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=40.08 E-value=1.1 Score=32.32 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=23.3
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-----hCCcEEEEEEcChhHHhc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-----ATGVTCIITTHYIEEARH 125 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-----~~g~tvi~vtH~~~~~~~ 125 (131)
+..|+..+++|++.+.|....+.+.+.+.... .....+++++|+++++..
T Consensus 146 v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~ 200 (231)
T 3lnc_A 146 IMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETAD 200 (231)
T ss_dssp EECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHH
T ss_pred EECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHH
Confidence 45566667788888888766666666665432 124578888999887654
No 301
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=39.99 E-value=47 Score=24.68 Aligned_cols=13 Identities=8% Similarity=0.081 Sum_probs=10.7
Q ss_pred hhCCCEEEEeCCC
Q psy4761 76 MHSPLLLILDEPT 88 (131)
Q Consensus 76 ~~~p~llilDEPt 88 (131)
...|.+|++||--
T Consensus 97 ~~~~~vl~iDEiD 109 (293)
T 3t15_A 97 KGNMCCLFINDLD 109 (293)
T ss_dssp TSSCCCEEEECCC
T ss_pred cCCCeEEEEechh
Confidence 4579999999983
No 302
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=39.82 E-value=79 Score=30.88 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=37.1
Q ss_pred HHHHHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHh---h-hCCcEEEEEEcChh
Q psy4761 66 QRRISVAVTMM--HSPLLLILDEPTAGLD-P------------LISDTIWQHLRTL---S-ATGVTCIITTHYIE 121 (131)
Q Consensus 66 ~qrl~iaral~--~~p~llilDEPt~gLD-~------------~~~~~i~~~l~~~---~-~~g~tvi~vtH~~~ 121 (131)
.+-+.+++.++ .+|+++++|..++-.. . ...+.+.+.++++ . +.|++||+++|-..
T Consensus 447 e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~ 521 (2050)
T 3cmu_A 447 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 521 (2050)
T ss_dssp HHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEE
T ss_pred HHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 34566777665 5799999999876542 1 1223455666665 3 56999999998543
No 303
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=38.66 E-value=66 Score=19.92 Aligned_cols=43 Identities=16% Similarity=0.113 Sum_probs=35.0
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 78 SPLLLILD-EPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 78 ~p~llilD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
+++-+++| ...+.+|......+....+++++.|..+.++.-..
T Consensus 41 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~ 84 (117)
T 1h4x_A 41 AVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPSP 84 (117)
T ss_dssp SCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESCCH
T ss_pred CCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 57788888 56778899999999999998887888887776544
No 304
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=38.10 E-value=75 Score=22.52 Aligned_cols=40 Identities=15% Similarity=0.056 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhh---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q psy4761 66 QRRISVAVTMMH---SPLLLILDEPTAGLDPLISDTIWQHLRTLS 107 (131)
Q Consensus 66 ~qrl~iaral~~---~p~llilDEPt~gLD~~~~~~i~~~l~~~~ 107 (131)
.+|+++..||.. +-++++.|+- .++....+.+.++|+.+.
T Consensus 73 ~rrlAl~sALs~k~~~~~lvVvd~~--~~~~~KTK~~~~~l~~l~ 115 (175)
T 2ftc_D 73 VRALGLKVALTVKLAQDDLHIMDSL--ELPTGDPQYLTELAHYRR 115 (175)
T ss_pred HHHHHHHHHHHHhccCCCEEEEecc--cCCCCCHHHHHHHHHHCC
Confidence 367888888864 5689999975 334445566777777763
No 305
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=37.77 E-value=83 Score=25.04 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=28.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
..+++++|-|-+|++....+ .+..++ . ..++++|.+.....
T Consensus 353 ~fD~Vv~dPPr~g~~~~~~~----~l~~l~-p-~givyvsc~p~tla 393 (425)
T 2jjq_A 353 GFDTVIVDPPRAGLHPRLVK----RLNREK-P-GVIVYVSCNPETFA 393 (425)
T ss_dssp TCSEEEECCCTTCSCHHHHH----HHHHHC-C-SEEEEEESCHHHHH
T ss_pred CCCEEEEcCCccchHHHHHH----HHHhcC-C-CcEEEEECChHHHH
Confidence 57999999999999864433 334443 2 35788898886654
No 306
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=37.67 E-value=25 Score=26.75 Aligned_cols=42 Identities=7% Similarity=0.114 Sum_probs=29.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
+.+++|+||+-. +...+...+.+.+.+.. ....+|++|++.+
T Consensus 82 ~~kvviIdead~-lt~~a~naLLk~LEep~-~~t~fIl~t~~~~ 123 (305)
T 2gno_A 82 TRKYVIVHDCER-MTQQAANAFLKALEEPP-EYAVIVLNTRRWH 123 (305)
T ss_dssp SSEEEEETTGGG-BCHHHHHHTHHHHHSCC-TTEEEEEEESCGG
T ss_pred CceEEEeccHHH-hCHHHHHHHHHHHhCCC-CCeEEEEEECChH
Confidence 358999999854 56667777777666542 3567888888874
No 307
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=37.53 E-value=88 Score=24.07 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=30.0
Q ss_pred hCCCEEEEeCC------CCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEcChhH
Q psy4761 77 HSPLLLILDEP------TAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYIEE 122 (131)
Q Consensus 77 ~~p~llilDEP------t~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~~ 122 (131)
....++|+|-| |.|+..... -.+.|.++++. +.+|+.+++|...
T Consensus 148 ~~~~vlIldqpdlLLa~t~~it~~~L--~~~~I~~L~k~~~~lvvt~saD~pl 198 (280)
T 4a8j_C 148 PTDTIVIIEQPELLLSLVSGLTCSEL--NNKFITPLLRQCKVLIIVSNSDIFN 198 (280)
T ss_dssp TTSEEEEEECGGGHHHHSTTCCHHHH--HHHTHHHHHHTCSEEEEEEECGGGC
T ss_pred CCCeEEEEcChHHHHHhccCCCHHHH--HHHHHHHHHHhcceEEEEeccCccc
Confidence 45689999999 556776543 04555555543 6788888888753
No 308
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=37.51 E-value=46 Score=24.33 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=34.8
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 72 AVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 72 aral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
-.+.....+++++|-. ..++|.. +.++++..++.|..++...|+.+++..
T Consensus 95 ~~~~~aGad~I~l~~~-~~~~p~~---l~~~i~~~~~~g~~v~~~v~t~eea~~ 144 (229)
T 3q58_A 95 DALAQAGADIIAFDAS-FRSRPVD---IDSLLTRIRLHGLLAMADCSTVNEGIS 144 (229)
T ss_dssp HHHHHHTCSEEEEECC-SSCCSSC---HHHHHHHHHHTTCEEEEECSSHHHHHH
T ss_pred HHHHHcCCCEEEECcc-ccCChHH---HHHHHHHHHHCCCEEEEecCCHHHHHH
Confidence 3456789999999954 3456643 444444444558889999999998864
No 309
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=37.28 E-value=78 Score=20.11 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=24.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
..|+++|+|--..+.+. ..+.+.+++.. .+..||++|..
T Consensus 46 ~~~dliild~~l~~~~g---~~~~~~l~~~~-~~~pii~ls~~ 84 (155)
T 1qkk_A 46 DFAGIVISDIRMPGMDG---LALFRKILALD-PDLPMILVTGH 84 (155)
T ss_dssp TCCSEEEEESCCSSSCH---HHHHHHHHHHC-TTSCEEEEECG
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhhC-CCCCEEEEECC
Confidence 57999999988777664 24455555432 34555555543
No 310
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=37.17 E-value=1.2e+02 Score=22.01 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=27.7
Q ss_pred CCCEEEEeCCCC--------CCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 78 SPLLLILDEPTA--------GLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 78 ~p~llilDEPt~--------gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
++.+|++||--. ..+......+.+.+.+. ..+..+|++|+.
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-~~~~~~i~~~~~ 178 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-RDDLVVILAGYA 178 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-TTTCEEEEEECH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-CCCEEEEEeCCh
Confidence 688999999842 23666667777777653 235667777763
No 311
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=37.01 E-value=36 Score=22.89 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 97 DTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 97 ~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
..+.+.+.++.+ .+.+|++|||..-
T Consensus 86 ~r~~~~l~~~~~~~~~~vlvV~H~~~ 111 (161)
T 1ujc_A 86 GLVSAYLQALTNEGVASVLVISHLPL 111 (161)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTH
T ss_pred HHHHHHHHHHhccCCCeEEEEeCHHH
Confidence 456666666643 5789999999753
No 312
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=36.88 E-value=72 Score=19.48 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=24.4
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH 118 (131)
-.+|+++|+|--..+.|- ..+.+.+++... ....|+++|.
T Consensus 48 ~~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 48 TFEPAIMTLDLSMPKLDG---LDVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp HTCCSEEEEESCBTTBCH---HHHHHHHHTTTCSSCCEEEEECC
T ss_pred hcCCCEEEEecCCCCCCH---HHHHHHHHhcCccCCCeEEEEeC
Confidence 468999999988877764 234444444321 2345555554
No 313
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=36.74 E-value=55 Score=24.22 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=33.2
Q ss_pred HHHHHHHHHHh---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 66 QRRISVAVTMM---HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 66 ~qrl~iaral~---~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
.+|+++..||. .+-+|++.|+- .++....+.+.++|+.+.-.+..+++|+.+
T Consensus 104 ~rrlAl~sALs~k~~~~~LvVvd~~--~~~~~KTK~~~~~L~~l~~~~~~~LiV~~~ 158 (225)
T 1dmg_A 104 MKKLALRSALSVKYRENKLLVLDDL--KLERPKTKSLKEILQNLQLSDKKTLIVLPW 158 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEESCC--CCSSCCHHHHHHHHHHTTCTTSCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeec--ccCCCCHHHHHHHHHHcCCCCCCEEEEECC
Confidence 36788888886 45689999975 445555677788888874221234455433
No 314
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=36.72 E-value=48 Score=25.18 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCcEEEEEE
Q psy4761 89 AGLDPLISDTIWQHLRTLSATGVTCIITT 117 (131)
Q Consensus 89 ~gLD~~~~~~i~~~l~~~~~~g~tvi~vt 117 (131)
.++|+.....+.+.|.++.+.|.-|++|+
T Consensus 67 ~~ld~~~i~~la~~I~~l~~~G~~vviV~ 95 (281)
T 3nwy_A 67 VGLDPDVVAQVARQIADVVRGGVQIAVVI 95 (281)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 78999999999999999988887776666
No 315
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=36.68 E-value=1e+02 Score=30.15 Aligned_cols=55 Identities=7% Similarity=0.044 Sum_probs=33.5
Q ss_pred HHHHHHHh--hCCCEEEEeCCCCCCC----------------HHHHHHHHHHHHHhhh-CCcEEEEEEcChhHH
Q psy4761 69 ISVAVTMM--HSPLLLILDEPTAGLD----------------PLISDTIWQHLRTLSA-TGVTCIITTHYIEEA 123 (131)
Q Consensus 69 l~iaral~--~~p~llilDEPt~gLD----------------~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~~~ 123 (131)
.+.++.+. .+|+++++|+-.+=-. ......+...|+.+++ .+++||+++|-....
T Consensus 799 ~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~~ 872 (2050)
T 3cmu_A 799 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 872 (2050)
T ss_dssp HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECT
T ss_pred HHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccccc
Confidence 34456654 5799999999432211 1122334446666654 599999999965443
No 316
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=36.65 E-value=96 Score=23.32 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=37.8
Q ss_pred CCCEEEEeCCCC--------------CCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 78 SPLLLILDEPTA--------------GLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 78 ~p~llilDEPt~--------------gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
.-.++.+|-|=. +-+.....++.+.++++.++|.-+++|-+|-+++.+
T Consensus 187 ~~~fvY~DPPY~~~~~~~~f~~Y~~~~f~~~dh~~L~~~l~~l~~~g~~~~lS~~d~~~i~~ 248 (284)
T 2dpm_A 187 TGDFVYFDPPYIPLSETSAFTSYTHEGFSFADQVRLRDAFKRLSDTGAYVMLSNSSSALVEE 248 (284)
T ss_dssp TTCEEEECCCCCCC-----CCCCCCSSCCHHHHHHHHHHHHHHHTTTCEEEEEEESCHHHHH
T ss_pred CCCEEEeCCCcccccCCCCccccccCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCCHHHHH
Confidence 347899998732 346677889999999987778889999999877754
No 317
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=36.62 E-value=31 Score=24.60 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhh-----hCCcEEEEEEcCh
Q psy4761 96 SDTIWQHLRTLS-----ATGVTCIITTHYI 120 (131)
Q Consensus 96 ~~~i~~~l~~~~-----~~g~tvi~vtH~~ 120 (131)
..++...+.++. ..+.+|++|||-.
T Consensus 155 ~~R~~~~l~~l~~~~~~~~~~~vlvVsHg~ 184 (237)
T 3r7a_A 155 STRIKAEIDKISEEAAKDGGGNVLVVVHGL 184 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEcCHH
Confidence 345666666664 2478999999964
No 318
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=36.54 E-value=99 Score=21.01 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=23.8
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-..|+++|+|--..+.|- -.+.+.+++.. .+..||++|.
T Consensus 44 ~~~~dlvllD~~l~~~~g---~~~~~~lr~~~-~~~~ii~ls~ 82 (225)
T 1kgs_A 44 NEPFDVVILDIMLPVHDG---WEILKSMRESG-VNTPVLMLTA 82 (225)
T ss_dssp HSCCSEEEEESCCSSSCH---HHHHHHHHHTT-CCCCEEEEES
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhcC-CCCCEEEEeC
Confidence 368999999987777764 23444454432 2444555554
No 319
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=36.25 E-value=36 Score=23.90 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhh--CCcEEEEEEcCh
Q psy4761 96 SDTIWQHLRTLSA--TGVTCIITTHYI 120 (131)
Q Consensus 96 ~~~i~~~l~~~~~--~g~tvi~vtH~~ 120 (131)
.+++.+.+.++.+ .+.+|++|||..
T Consensus 126 ~~R~~~~l~~l~~~~~~~~vlvVsHg~ 152 (207)
T 1h2e_A 126 QQRALEAVQSIVDRHEGETVLIVTHGV 152 (207)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEECHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEcCHH
Confidence 3456666777653 368999999975
No 320
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=35.46 E-value=76 Score=21.24 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 65 QQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 65 ~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
++|+-.+ +..+.+-.+++-|+- ||-+ ..+..+.+++..+.+...-+|+|.+
T Consensus 21 ~~Q~~~l-~~~~~g~~~i~~D~~-SG~~-~~Rp~l~~ll~~~~~g~id~vvv~~ 71 (143)
T 3ilx_A 21 ANQVKYL-EEQVKEYDLVITDIG-SGLN-MKRKGFLKLLRMILNNEVSRVITAY 71 (143)
T ss_dssp HHHHHHH-HHHCSCCSEEEEEES-CTTC-TTCHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHH-HHHhCCCeEEEEcCc-cccc-CCcHHHHHHHHHHHhCCCCEEEEEe
Confidence 4444433 334446667666665 7776 4566677777665433233444443
No 321
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=35.45 E-value=1e+02 Score=20.86 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=23.2
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-..|+++|+|--..+.|- -.+.+.+++.. ....||++|.
T Consensus 49 ~~~~dlvllD~~lp~~~g---~~~~~~lr~~~-~~~~ii~ls~ 87 (215)
T 1a04_A 49 SLDPDLILLDLNMPGMNG---LETLDKLREKS-LSGRIVVFSV 87 (215)
T ss_dssp HHCCSEEEEETTSTTSCH---HHHHHHHHHSC-CCSEEEEEEC
T ss_pred hcCCCEEEEeCCCCCCcH---HHHHHHHHHhC-CCCcEEEEEC
Confidence 358999999987777764 23444444432 2344555443
No 322
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=35.43 E-value=85 Score=19.91 Aligned_cols=40 Identities=18% Similarity=0.105 Sum_probs=25.3
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
-..|+++|+|--..+.|- ..+.+.+++. ..+..||++|..
T Consensus 56 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~-~~~~~ii~~s~~ 95 (153)
T 3hv2_A 56 SREVDLVISAAHLPQMDG---PTLLARIHQQ-YPSTTRILLTGD 95 (153)
T ss_dssp HSCCSEEEEESCCSSSCH---HHHHHHHHHH-CTTSEEEEECCC
T ss_pred cCCCCEEEEeCCCCcCcH---HHHHHHHHhH-CCCCeEEEEECC
Confidence 368999999988877764 3344555543 234556666543
No 323
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=35.27 E-value=57 Score=22.55 Aligned_cols=59 Identities=12% Similarity=-0.066 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHhh---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh--hCCcEEEEEEcChhH
Q psy4761 61 VSGGQQRRISVAVTMMH---SPLLLILDEPTAGLDPLISDTIWQHLRTLS--ATGVTCIITTHYIEE 122 (131)
Q Consensus 61 LS~G~~qrl~iaral~~---~p~llilDEPt~gLD~~~~~~i~~~l~~~~--~~g~tvi~vtH~~~~ 122 (131)
+|.-.++=..-|..+.. ++++-..|+-+.+=|+. .+.+.+.++. +.+.++++|+|+...
T Consensus 51 ~sSp~~Ra~qTa~~l~~~~~~~~~~~~~~L~~~~~~~---~~~~~l~~~~~~~~~~~vllVgH~P~l 114 (172)
T 3f2i_A 51 VTSPLIRARQTAEILLASGLSCQLEESNHLAPNGNIF---NWLDYWLKPKNFPENAQIAIVGHEPCL 114 (172)
T ss_dssp EECSSHHHHHHHHHHHHTTSCSCEEECGGGSTTCCHH---HHHHHTHHHHCCCTTCEEEEEECTTHH
T ss_pred EECChHHHHHHHHHHHhcCCCCCeEECcccCCccCHH---HHHHHHHHhccCCCCCEEEEEeCChHH
Confidence 33334444444444443 35666666655555543 3455555543 457799999998743
No 324
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=35.02 E-value=77 Score=19.62 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=23.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEE
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vt 117 (131)
..|+++|+|--..+.|- ..+.+.+++. ..+..||++|
T Consensus 59 ~~~dlvilD~~l~~~~g---~~~~~~l~~~-~~~~~ii~ls 95 (138)
T 2b4a_A 59 STCDLLIVSDQLVDLSI---FSLLDIVKEQ-TKQPSVLILT 95 (138)
T ss_dssp GSCSEEEEETTCTTSCH---HHHHHHHTTS-SSCCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhh-CCCCCEEEEE
Confidence 57999999988777664 2333444331 2255666666
No 325
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=34.96 E-value=80 Score=19.43 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=21.3
Q ss_pred hCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTA-----GLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~-----gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
..|+++|+|--.. +.|- ..+.+.+++.. .+..||++|.
T Consensus 46 ~~~dlvi~d~~~~~~~~~~~~g---~~~~~~l~~~~-~~~~ii~ls~ 88 (140)
T 2qr3_A 46 ENPEVVLLDMNFTSGINNGNEG---LFWLHEIKRQY-RDLPVVLFTA 88 (140)
T ss_dssp SCEEEEEEETTTTC-----CCH---HHHHHHHHHHC-TTCCEEEEEE
T ss_pred CCCCEEEEeCCcCCCCCCCccH---HHHHHHHHhhC-cCCCEEEEEC
Confidence 5799999998765 5553 23444554432 2344444443
No 326
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=34.70 E-value=78 Score=19.28 Aligned_cols=39 Identities=10% Similarity=0.233 Sum_probs=23.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH 118 (131)
..|+++|+|--..+.|- ..+.+.+++... .+..||++|.
T Consensus 54 ~~~dlvi~d~~~~~~~g---~~~~~~l~~~~~~~~~pii~ls~ 93 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDG---REVLAEIKSDPTLKRIPVVVLST 93 (140)
T ss_dssp CCCSEEEECSSCSSSCH---HHHHHHHHHSTTGGGSCEEEEES
T ss_pred CCCcEEEEecCCCcccH---HHHHHHHHcCcccccccEEEEec
Confidence 47999999988777664 344555554321 2344444443
No 327
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=34.64 E-value=63 Score=20.10 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=19.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH 118 (131)
.+|+++|+|--..+.|- ..+.+.+++... .+..||++|-
T Consensus 45 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~ 84 (140)
T 3n53_A 45 HHPDLVILDMDIIGENS---PNLCLKLKRSKGLKNVPLILLFS 84 (140)
T ss_dssp HCCSEEEEETTC---------CHHHHHHTSTTCTTCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCcH---HHHHHHHHcCcccCCCCEEEEec
Confidence 58999999977665442 334444544321 3444555444
No 328
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=34.49 E-value=38 Score=28.24 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=32.9
Q ss_pred CCCEEEEeCCC--------------CCCCH-----HHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 78 SPLLLILDEPT--------------AGLDP-----LISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 78 ~p~llilDEPt--------------~gLD~-----~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+|+++++|-|. +.-|. ...+.+...++++.+.|..++++.-+.+.
T Consensus 241 n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~~ 304 (559)
T 3p9d_A 241 NVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDD 304 (559)
T ss_dssp SBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCCG
T ss_pred CceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCCH
Confidence 99999999885 22232 23345788888888889999999877653
No 329
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=34.47 E-value=75 Score=18.98 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=23.2
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-..|+++++|--..+.|- ..+.+.+++.. ....+|++|.
T Consensus 42 ~~~~dlil~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~ 80 (121)
T 2pl1_A 42 EHIPDIAIVDLGLPDEDG---LSLIRRWRSND-VSLPILVLTA 80 (121)
T ss_dssp HSCCSEEEECSCCSSSCH---HHHHHHHHHTT-CCSCEEEEES
T ss_pred ccCCCEEEEecCCCCCCH---HHHHHHHHhcC-CCCCEEEEec
Confidence 357999999987777664 23444444422 2444555554
No 330
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=34.32 E-value=83 Score=19.45 Aligned_cols=40 Identities=8% Similarity=0.121 Sum_probs=25.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHh---hhCCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTL---SATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~---~~~g~tvi~vtH~ 119 (131)
..|+++|+|--..+.|- ..+.+.+++. ......||++|..
T Consensus 59 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~~~ii~~t~~ 101 (146)
T 3ilh_A 59 RWPSIICIDINMPGING---WELIDLFKQHFQPMKNKSIVCLLSSS 101 (146)
T ss_dssp CCCSEEEEESSCSSSCH---HHHHHHHHHHCGGGTTTCEEEEECSS
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHHhhhhccCCCeEEEEeCC
Confidence 67999999988887774 3455556552 1234555555543
No 331
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=34.28 E-value=55 Score=23.90 Aligned_cols=50 Identities=8% Similarity=0.131 Sum_probs=34.7
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 72 AVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 72 aral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
-.++....+++++|-. ..++|.. +.++++..++.|..++...|+.+++..
T Consensus 95 ~~~~~~Gad~V~l~~~-~~~~p~~---l~~~i~~~~~~g~~v~~~v~t~eea~~ 144 (232)
T 3igs_A 95 DALAQAGAAIIAVDGT-ARQRPVA---VEALLARIHHHHLLTMADCSSVDDGLA 144 (232)
T ss_dssp HHHHHHTCSEEEEECC-SSCCSSC---HHHHHHHHHHTTCEEEEECCSHHHHHH
T ss_pred HHHHHcCCCEEEECcc-ccCCHHH---HHHHHHHHHHCCCEEEEeCCCHHHHHH
Confidence 3456789999999854 4456643 444444444558889999999998864
No 332
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=34.01 E-value=81 Score=19.26 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=24.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCc-EEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGV-TCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~-tvi~vtH~ 119 (131)
..|+++|+|--..+.|- ..+.+.+++...... .|+++++.
T Consensus 47 ~~~dlvllD~~l~~~~g---~~~~~~l~~~~~~~~~ii~ls~~~ 87 (130)
T 1dz3_A 47 KRPDILLLDIIMPHLDG---LAVLERIRAGFEHQPNVIMLTAFG 87 (130)
T ss_dssp HCCSEEEEESCCSSSCH---HHHHHHHHHHCSSCCEEEEEEETT
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHhcCCCCCcEEEEecCC
Confidence 57999999987777764 244555554212234 34455554
No 333
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=33.83 E-value=50 Score=23.82 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=29.5
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
..+.+++++||-=-= .. +.+.+..+.+.|+.||+...+.+
T Consensus 89 ~~~~DvIlIDEaQFf--k~----~ve~~~~L~~~gk~VI~~GL~~D 128 (195)
T 1w4r_A 89 ALGVAVIGIDEGQFF--PD----IVEFCEAMANAGKTVIVAALDGT 128 (195)
T ss_dssp HHTCSEEEESSGGGC--TT----HHHHHHHHHHTTCEEEEEEESBC
T ss_pred ccCCCEEEEEchhhh--HH----HHHHHHHHHHCCCeEEEEecccc
Confidence 567899999998443 21 44555666677999999999874
No 334
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=33.80 E-value=65 Score=20.45 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=24.4
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH 118 (131)
-..|+++|+|--..+.|- ..+.+.+++.. ..+..||++|.
T Consensus 57 ~~~~dliilD~~l~~~~g---~~~~~~lr~~~~~~~~pii~~t~ 97 (152)
T 3heb_A 57 AGRAQLVLLDLNLPDMTG---IDILKLVKENPHTRRSPVVILTT 97 (152)
T ss_dssp TTCBEEEEECSBCSSSBH---HHHHHHHHHSTTTTTSCEEEEES
T ss_pred cCCCCEEEEeCCCCCCcH---HHHHHHHHhcccccCCCEEEEec
Confidence 467999999988777764 34555555521 12444555554
No 335
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=33.72 E-value=84 Score=21.76 Aligned_cols=45 Identities=22% Similarity=0.177 Sum_probs=30.5
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHhh-hCCcEEEEEEcCh
Q psy4761 76 MHSPLLLILDEPTA----GLDPLISDTIWQHLRTLS-ATGVTCIITTHYI 120 (131)
Q Consensus 76 ~~~p~llilDEPt~----gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~ 120 (131)
..+|+++++|--+. .-+......+...+.+++ +.|+++++++|-.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 46899999996432 113444556666676665 4599999999854
No 336
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=33.57 E-value=88 Score=19.52 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=24.5
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
-..|+++|+|--..+.|- ..+.+.+++. .....||++|..
T Consensus 46 ~~~~dlvllD~~l~~~~g---~~l~~~l~~~-~~~~~ii~ls~~ 85 (137)
T 3cfy_A 46 RSKPQLIILDLKLPDMSG---EDVLDWINQN-DIPTSVIIATAH 85 (137)
T ss_dssp HHCCSEEEECSBCSSSBH---HHHHHHHHHT-TCCCEEEEEESS
T ss_pred hcCCCEEEEecCCCCCCH---HHHHHHHHhc-CCCCCEEEEEec
Confidence 358999999987777664 2344445443 234556666543
No 337
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=33.44 E-value=50 Score=24.04 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhh----CCcEEEEEEcCh
Q psy4761 97 DTIWQHLRTLSA----TGVTCIITTHYI 120 (131)
Q Consensus 97 ~~i~~~l~~~~~----~g~tvi~vtH~~ 120 (131)
+++...+.++.+ .+.+|++|||..
T Consensus 177 ~R~~~~l~~l~~~~~~~~~~vlvVsHg~ 204 (273)
T 3d4i_A 177 ERCAVSMGQIINTCPQDMGITLIVSHSS 204 (273)
T ss_dssp HHHHHHHHHHHTTSTTCCSEEEEEECTT
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEechH
Confidence 345566666542 468999999975
No 338
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=33.34 E-value=95 Score=19.81 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=25.2
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH 118 (131)
-.+|+++|+|--..+.|- ..+.+.+++... .+..||++|.
T Consensus 49 ~~~~dlii~D~~l~~~~g---~~~~~~lr~~~~~~~~pii~~s~ 89 (154)
T 3gt7_A 49 LTRPDLIISDVLMPEMDG---YALCRWLKGQPDLRTIPVILLTI 89 (154)
T ss_dssp TCCCSEEEEESCCSSSCH---HHHHHHHHHSTTTTTSCEEEEEC
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHhCCCcCCCCEEEEEC
Confidence 367999999988877774 335555555321 3455666553
No 339
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=33.32 E-value=89 Score=19.48 Aligned_cols=40 Identities=18% Similarity=0.068 Sum_probs=23.7
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH 118 (131)
-.+|+++|+|--..+.|- ..+.+.+++.. ..+..||++|.
T Consensus 49 ~~~~dlii~D~~l~~~~g---~~~~~~lr~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 49 QAKYDLIILDIGLPIANG---FEVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp TCCCSEEEECTTCGGGCH---HHHHHHHHSSSTTTTCCEEEEET
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhcccccCCCEEEEeC
Confidence 367999999987766653 33444454421 12455666654
No 340
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=33.22 E-value=44 Score=24.26 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhh----CCcEEEEEEcCh
Q psy4761 97 DTIWQHLRTLSA----TGVTCIITTHYI 120 (131)
Q Consensus 97 ~~i~~~l~~~~~----~g~tvi~vtH~~ 120 (131)
+++.+.+.++.+ .+.+|++|||..
T Consensus 167 ~Rv~~~l~~l~~~~~~~~~~vlvVsHg~ 194 (263)
T 3c7t_A 167 KRGEVAMQAAVNDTEKDGGNVIFIGHAI 194 (263)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEeCHH
Confidence 345566666542 467999999975
No 341
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=33.21 E-value=62 Score=26.91 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=33.3
Q ss_pred hhCCCEEEEeCCC-------------CCCCH------HHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 76 MHSPLLLILDEPT-------------AGLDP------LISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 76 ~~~p~llilDEPt-------------~gLD~------~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
+.||+|+++|-|. +..+. ...+.+.+.++++.+.|..++++.-.++
T Consensus 236 ~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I~ 300 (550)
T 3p9d_G 236 FNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIG 300 (550)
T ss_dssp CSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCCC
T ss_pred ccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 7899999999984 23321 2234566778888778999999887665
No 342
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=33.18 E-value=83 Score=19.10 Aligned_cols=37 Identities=8% Similarity=-0.030 Sum_probs=22.5
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 78 SPLLLILDEPTAG-LDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 78 ~p~llilDEPt~g-LD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.|+++|+|--..+ .|- ..+.+.+++.. .+..||++|.
T Consensus 50 ~~dlvi~d~~l~~~~~g---~~~~~~l~~~~-~~~~ii~~s~ 87 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDG---WQVARVAREID-PNMPIVYISG 87 (132)
T ss_dssp CCCEEEEESCCSSSSCH---HHHHHHHHHHC-TTCCEEEEES
T ss_pred CCCEEEEeeeCCCCCCH---HHHHHHHHhcC-CCCCEEEEeC
Confidence 7999999987765 664 23445555432 2445555554
No 343
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=33.16 E-value=90 Score=19.50 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=23.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
..|+++|+|--..+.| ...+.+.+++.. .+..||++|.
T Consensus 66 ~~~dlvi~D~~l~~~~---g~~~~~~l~~~~-~~~~ii~lt~ 103 (146)
T 4dad_A 66 DAFDILMIDGAALDTA---ELAAIEKLSRLH-PGLTCLLVTT 103 (146)
T ss_dssp TTCSEEEEECTTCCHH---HHHHHHHHHHHC-TTCEEEEEES
T ss_pred CCCCEEEEeCCCCCcc---HHHHHHHHHHhC-CCCcEEEEeC
Confidence 6899999998766533 334445555432 3455555554
No 344
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=33.07 E-value=88 Score=19.39 Aligned_cols=39 Identities=10% Similarity=-0.000 Sum_probs=23.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
..|+++|+|=-..+.|- -.+.+.+++.......||++|.
T Consensus 51 ~~~dlvllD~~mp~~~G---~~~~~~lr~~~~~~~~ii~lt~ 89 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDG---LLSTKMIRRDLGYTSPIVALTA 89 (133)
T ss_dssp CCCSEEEECSCCSSSCH---HHHHHHHHHHSCCCSCEEEEES
T ss_pred CCCCEEEEeCCCCCCCh---HHHHHHHHhhcCCCCCEEEEEC
Confidence 57999999987777774 2344455442222334555544
No 345
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=32.99 E-value=66 Score=23.18 Aligned_cols=58 Identities=10% Similarity=0.021 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHh---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-h--CCcEEEEEEcChhH
Q psy4761 64 GQQRRISVAVTMM---HSPLLLILDEPTAGLDPLISDTIWQHLRTLS-A--TGVTCIITTHYIEE 122 (131)
Q Consensus 64 G~~qrl~iaral~---~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~--~g~tvi~vtH~~~~ 122 (131)
|++.+-.+.+++. .+++++|+--+.+.+.... ..+.+.+.+.. . .+.++|+++|-.+.
T Consensus 88 ~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 88 TDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHH-HHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 3555566777763 7888888776666665543 44556666643 2 26789999997654
No 346
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=32.88 E-value=14 Score=26.67 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCC--CH-HHHHHHHHHHHHhhhCCcEEEEEE---cCh----hHHhcCCcccC
Q psy4761 78 SPLLLILDEPTAGL--DP-LISDTIWQHLRTLSATGVTCIITT---HYI----EEARHAHKVPI 131 (131)
Q Consensus 78 ~p~llilDEPt~gL--D~-~~~~~i~~~l~~~~~~g~tvi~vt---H~~----~~~~~~dri~~ 131 (131)
.|++.++| |++- |. ...+.+.+.+++ -|..+..+. |+. +.+..||.|++
T Consensus 27 ~~~i~~Ip--~As~~~~~~~~~~s~~~a~~~---lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l 85 (206)
T 3l4e_A 27 GKTVTFIP--TASTVEEVTFYVEAGKKALES---LGLLVEELDIATESLGEITTKLRKNDFIYV 85 (206)
T ss_dssp TCEEEEEC--GGGGGCSCCHHHHHHHHHHHH---TTCEEEECCTTTSCHHHHHHHHHHSSEEEE
T ss_pred CCEEEEEC--CCCCCCCHHHHHHHHHHHHHH---cCCeEEEEEecCCChHHHHHHHHhCCEEEE
Confidence 58999995 4433 22 234455555554 476665554 666 45667998764
No 347
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=32.85 E-value=59 Score=28.56 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=34.2
Q ss_pred HHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChhHHh
Q psy4761 69 ISVAVTMMHSPLLLILDEPTA----------GLDPLISDTIWQHLRTLSA-TGVTCIITTHYIEEAR 124 (131)
Q Consensus 69 l~iaral~~~p~llilDEPt~----------gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~~~~ 124 (131)
-.+..|--+.|.||++||--+ +.+......+...+..+.. .+..||.+|.+.+.+.
T Consensus 288 ~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 288 KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp HHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred HHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 345666678899999999722 1222233344455555543 3677888888876553
No 348
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=32.58 E-value=92 Score=19.43 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=23.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-hhCCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~-~~~g~tvi~vtH 118 (131)
..|+++|+|--..+.|- ..+.+.+++. ...+..||++|.
T Consensus 51 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~ls~ 90 (147)
T 2zay_A 51 THPHLIITEANMPKISG---MDLFNSLKKNPQTASIPVIALSG 90 (147)
T ss_dssp HCCSEEEEESCCSSSCH---HHHHHHHHTSTTTTTSCEEEEES
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHcCcccCCCCEEEEeC
Confidence 48999999988777664 3344555542 112455555554
No 349
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=32.38 E-value=1.3e+02 Score=21.08 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=23.4
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-..|+++|+|=-..+.|- -.+.+.+++.. .+..||++|.
T Consensus 65 ~~~~dlvllD~~lp~~~g---~~~~~~lr~~~-~~~~ii~lt~ 103 (250)
T 3r0j_A 65 ETRPDAVILDVXMPGMDG---FGVLRRLRADG-IDAPALFLTA 103 (250)
T ss_dssp HHCCSEEEEESCCSSSCH---HHHHHHHHHTT-CCCCEEEEEC
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHhcC-CCCCEEEEEC
Confidence 368999999987777774 23444444432 2344555444
No 350
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=32.22 E-value=80 Score=23.95 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=35.8
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 71 VAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 71 iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
|.-|-....+.++| ..+.|+......+.+.-+ +-|..+++=.|+.+++++
T Consensus 119 I~eAr~~GADaILL--I~a~L~~~~l~~l~~~A~---~lGl~~LvEVh~~~El~r 168 (258)
T 4a29_A 119 IDDAYNLGADTVLL--IVKILTERELESLLEYAR---SYGMEPLILINDENDLDI 168 (258)
T ss_dssp HHHHHHHTCSEEEE--EGGGSCHHHHHHHHHHHH---HTTCCCEEEESSHHHHHH
T ss_pred HHHHHHcCCCeeeh--HHhhcCHHHHHHHHHHHH---HHhHHHHHhcchHHHHHH
Confidence 55555668888877 457788766555544443 459999999999999876
No 351
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=32.18 E-value=44 Score=24.11 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhh----hCCcEEEEEEcCh
Q psy4761 96 SDTIWQHLRTLS----ATGVTCIITTHYI 120 (131)
Q Consensus 96 ~~~i~~~l~~~~----~~g~tvi~vtH~~ 120 (131)
..++...+.++. ..+.+|++|||-.
T Consensus 164 ~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~ 192 (257)
T 3gp3_A 164 VARVLPLWNESIAPAVKAGKQVLIAAHGN 192 (257)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEeCcH
Confidence 345666666653 3578999999964
No 352
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=32.15 E-value=41 Score=24.45 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=16.4
Q ss_pred HHHHHHHHHhh----hCCcEEEEEEcCh
Q psy4761 97 DTIWQHLRTLS----ATGVTCIITTHYI 120 (131)
Q Consensus 97 ~~i~~~l~~~~----~~g~tvi~vtH~~ 120 (131)
.++...+.++. ..+.+|++|||.-
T Consensus 168 ~R~~~~l~~l~~~~~~~~~~vlvVsHg~ 195 (264)
T 3mbk_A 168 NRSFQVTKEIISECKSKGNNILIVAHAS 195 (264)
T ss_dssp HHHHHHHHHHHHHHTTSCSEEEEEECTT
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEecHH
Confidence 34556666553 2478999999975
No 353
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=31.87 E-value=67 Score=23.45 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCcEEEEEE
Q psy4761 89 AGLDPLISDTIWQHLRTLSATGVTCIITT 117 (131)
Q Consensus 89 ~gLD~~~~~~i~~~l~~~~~~g~tvi~vt 117 (131)
.++|+...+.+.+.|.++++.|.-+++|+
T Consensus 25 ~~~~~~~i~~~a~~I~~l~~~G~~vvlV~ 53 (240)
T 4a7w_A 25 FGIDIHVLDHIAKEIKSLVENDIEVGIVI 53 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 47999999999999999988787666554
No 354
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=31.86 E-value=83 Score=26.71 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=28.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh----------hCCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLS----------ATGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~----------~~g~tvi~vtH 118 (131)
..+.++++||.- .+++.....+.+.+.+-. ..+..+|++|+
T Consensus 578 ~~~~vl~lDEi~-~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 578 KPYSVVLLDAIE-KAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp CSSSEEEEECGG-GSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred CCCeEEEEeCcc-ccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 356899999984 468888888888887622 11346777777
No 355
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=31.85 E-value=84 Score=20.17 Aligned_cols=42 Identities=10% Similarity=0.131 Sum_probs=24.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC-CcEEEEEEc
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~vtH 118 (131)
.-+.-+.+|-=.+.|++.....+.++...+... +..|.++.|
T Consensus 3 ~~~~~i~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Gh 45 (118)
T 2hqs_H 3 QQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGH 45 (118)
T ss_dssp -CCSEEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred cccceeEecCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 345556666666677776666665555555433 456666666
No 356
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=31.59 E-value=33 Score=27.88 Aligned_cols=44 Identities=16% Similarity=0.115 Sum_probs=27.4
Q ss_pred hCCCEEEEeCCCCCCC-----HHH---------------HHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 77 HSPLLLILDEPTAGLD-----PLI---------------SDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 77 ~~p~llilDEPt~gLD-----~~~---------------~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
...+++++|=|++|.- |.. +..+++...++.+.|..++++|-.+
T Consensus 174 ~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 174 GFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp TCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred ccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 4569999999998864 222 1233333334435577888887644
No 357
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Probab=31.28 E-value=89 Score=23.16 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=28.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 86 EPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 86 EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
++...+|....+.+.+++..+.+.|..||+.-|..
T Consensus 61 ~~~~~~~~~~l~~~~~~v~~~~~~gi~vild~h~~ 95 (305)
T 1h1n_A 61 SMTGSPDPNYLADLIATVNAITQKGAYAVVDPHNY 95 (305)
T ss_dssp STTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEecccc
Confidence 45566888888888888888888899999999975
No 358
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=31.24 E-value=85 Score=18.62 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=22.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+|+++++|--..+.|-. .+.+.+++. ....+|++|.
T Consensus 44 ~~~dlvl~D~~l~~~~g~---~~~~~l~~~--~~~~ii~~s~ 80 (120)
T 2a9o_A 44 EQPDIIILDLMLPEIDGL---EVAKTIRKT--SSVPILMLSA 80 (120)
T ss_dssp HCCSEEEECSSCSSSCHH---HHHHHHHHH--CCCCEEEEES
T ss_pred CCCCEEEEeccCCCCCHH---HHHHHHHhC--CCCCEEEEec
Confidence 589999999877776642 344555542 3444555543
No 359
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=31.24 E-value=81 Score=18.38 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=24.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~ 119 (131)
..|+++|+|-...+.|. ..+.+.+++... .+..+|++|..
T Consensus 44 ~~~dlii~d~~~~~~~~---~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 44 LQPIVILMAWPPPDQSC---LLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HCCSEEEEECSTTCCTH---HHHHHHHHHTCCCSSCCCEEEESS
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHhccccCCCCEEEEeCC
Confidence 57999999988777664 345555555421 34455555543
No 360
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=31.23 E-value=18 Score=26.35 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=24.2
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLS 107 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~ 107 (131)
..||+|++=||..+|=|--....+.+.|..++
T Consensus 69 n~n~dIvF~deE~tgadR~Mt~Rc~~kL~~La 100 (187)
T 3k7i_B 69 NYNPDIIFKDEENTGADRLMTQRCKDRLNSLA 100 (187)
T ss_dssp CCCTTEEECCTTSSSGGGEECHHHHHHHHHHH
T ss_pred cCCCceEecCccCCCcchhhCHHHHHHHHHHH
Confidence 45899999999999977766666666665553
No 361
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=30.91 E-value=94 Score=21.15 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=24.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
..|+++|+|--..+.|- -.+.+.+++.. .+..||++|.
T Consensus 42 ~~~dlvllD~~lp~~~g---~~~~~~lr~~~-~~~~ii~lt~ 79 (220)
T 1p2f_A 42 EAFHVVVLDVMLPDYSG---YEICRMIKETR-PETWVILLTL 79 (220)
T ss_dssp SCCSEEEEESBCSSSBH---HHHHHHHHHHC-TTSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC-CCCcEEEEEc
Confidence 78999999987777664 23445555432 3455555554
No 362
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B
Probab=30.91 E-value=18 Score=25.93 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=24.2
Q ss_pred hCCCEEEEeCCCCC----CCHHHHHHHHHHHHHhhh-C-CcEEEEEE
Q psy4761 77 HSPLLLILDEPTAG----LDPLISDTIWQHLRTLSA-T-GVTCIITT 117 (131)
Q Consensus 77 ~~p~llilDEPt~g----LD~~~~~~i~~~l~~~~~-~-g~tvi~vt 117 (131)
.+|+|++-||-.+| +|+...+.+..+-..+.. . |..|.++|
T Consensus 62 ~n~divFrDee~tg~~~~Md~rl~d~L~~L~~~v~~~~~g~pi~V~S 108 (170)
T 3n1g_B 62 YNPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWPGVRLRVTE 108 (170)
T ss_dssp CCTTEEECCTTSSSGGGEECHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred CCCCcEEecccccCCcccCCHHHHHHHHHHHHHHhcccCCCcEEEEe
Confidence 38999999999544 555444444433333322 1 65666665
No 363
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=30.85 E-value=57 Score=26.94 Aligned_cols=45 Identities=2% Similarity=0.008 Sum_probs=34.2
Q ss_pred hhCCCEEEEeCCCCC-------------CCH------HHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 76 MHSPLLLILDEPTAG-------------LDP------LISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 76 ~~~p~llilDEPt~g-------------LD~------~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
+.||+++++|-|... .+. ...+.+...+.++.+.|..++++.-+.
T Consensus 229 ien~kIll~~~~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I 292 (528)
T 3p9d_D 229 KEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSI 292 (528)
T ss_dssp ESSEEEEEECCCSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCS
T ss_pred ccCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 679999999999762 221 233457888888888899999998776
No 364
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=30.82 E-value=1.1e+02 Score=22.80 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=36.9
Q ss_pred CCCEEEEeCCCC--------------CCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhc
Q psy4761 78 SPLLLILDEPTA--------------GLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH 125 (131)
Q Consensus 78 ~p~llilDEPt~--------------gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~ 125 (131)
.-+++.+|-|=. +-+.....++.+.++++.++|.-+++|-+|-+++.+
T Consensus 174 ~~~fvY~DPPY~~~~~~~~f~~Y~~~~F~~~dh~~L~~~l~~l~~~~~~~~lS~~d~~~i~~ 235 (278)
T 2g1p_A 174 DSSVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTRE 235 (278)
T ss_dssp TTEEEEECCSCCCC-----------CCCCHHHHHHHHHHHHHHHHTTCCEEEEEECCHHHHH
T ss_pred CCCEEEeCCcccccCCCCCccccccCCCCHHHHHHHHHHHHHHHhcCCeEEEEcCCCHHHHH
Confidence 347999999842 235566778999999988778889999999877654
No 365
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=30.61 E-value=1e+02 Score=19.38 Aligned_cols=45 Identities=7% Similarity=0.049 Sum_probs=37.5
Q ss_pred hCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 77 HSPLLLILD-EPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 77 ~~p~llilD-EPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+++-+++| .-...+|......+....+++++ .|..+.++.-...
T Consensus 46 ~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~~g~~l~l~~~~~~ 92 (121)
T 3t6o_A 46 AQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKEDQQGVFALCSVSPY 92 (121)
T ss_dssp SSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTSTTCEEEEESCCHH
T ss_pred cCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 468899999 67888999999999999999888 8888888765543
No 366
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=30.51 E-value=1e+02 Score=21.54 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=30.3
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 70 SVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 70 ~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.-+.++....++-+.++-- .-++ ..+.+.++++.+...++++|+|+...
T Consensus 76 qTa~~~~~~~~~~~~~~ly-~~~~---~~~l~~i~~~~~~~~~vllvGHnP~l 124 (186)
T 4hbz_A 76 QTLAATGISAQVRYRDELY-GGGV---DEILAEVAAVPADASTVLVVGHAPTI 124 (186)
T ss_dssp HHHHHHTCCSEEEEEGGGT-TCCH---HHHHHHHHTSCTTCSEEEEEECTTHH
T ss_pred HHHHhhccccccccccccc-ccCh---HHHHHHHHhccCCCCeeeecccCCCH
Confidence 3344555555555555432 2233 45667777765667899999999743
No 367
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=30.49 E-value=65 Score=20.00 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=17.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRT 105 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~ 105 (131)
..|+++|+|--..+.|- ..+.+.+++
T Consensus 61 ~~~dlvi~D~~l~~~~g---~~~~~~l~~ 86 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDG---REVLQEIKQ 86 (149)
T ss_dssp CCCSEEEECSCCSSSCH---HHHHHHHTT
T ss_pred CCCcEEEEECCCCCCCH---HHHHHHHHh
Confidence 57999999988777764 234444443
No 368
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=30.45 E-value=96 Score=19.01 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=23.9
Q ss_pred hC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 77 HS-PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 77 ~~-p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
.. |+++|+|--..+.|- ..+.+.+++....+..||++|..
T Consensus 50 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~ii~~s~~ 90 (136)
T 3hdv_A 50 QKRIGLMITDLRMQPESG---LDLIRTIRASERAALSIIVVSGD 90 (136)
T ss_dssp CTTEEEEEECSCCSSSCH---HHHHHHHHTSTTTTCEEEEEESS
T ss_pred CCCCcEEEEeccCCCCCH---HHHHHHHHhcCCCCCCEEEEeCC
Confidence 44 899999988877764 23444444431134556666644
No 369
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=30.37 E-value=98 Score=19.08 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=27.8
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcChh
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHYIE 121 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~~~ 121 (131)
-.+|+++|+|--..+.|- ..+.+.+++.. ..+..||++|...+
T Consensus 48 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~~~ 91 (140)
T 3grc_A 48 RRPYAAMTVDLNLPDQDG---VSLIRALRRDSRTRDLAIVVVSANAR 91 (140)
T ss_dssp HSCCSEEEECSCCSSSCH---HHHHHHHHTSGGGTTCEEEEECTTHH
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHhCcccCCCCEEEEecCCC
Confidence 368999999988887774 34455555421 23566777776543
No 370
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=30.36 E-value=77 Score=22.06 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 79 PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 79 p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-..+++| +|.+......+.+.+++........|++||
T Consensus 50 ~~~iliD---~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH 86 (227)
T 1mqo_A 50 KGLVLVD---SSWDDKLTKELIEMVEKKFQKRVTDVIITH 86 (227)
T ss_dssp TEEEEES---CCSSHHHHHHHHHHHHHHHTSCEEEEECCC
T ss_pred CeEEEEE---CCCChHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 3567777 344554455666777664334567788888
No 371
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=30.36 E-value=49 Score=24.27 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhh----hCCcEEEEEEcCh
Q psy4761 96 SDTIWQHLRTLS----ATGVTCIITTHYI 120 (131)
Q Consensus 96 ~~~i~~~l~~~~----~~g~tvi~vtH~~ 120 (131)
..++...+.++. ..+.+|++|||--
T Consensus 182 ~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~ 210 (274)
T 4emb_A 182 VARVIPYWTDEIAKEVLEGKKVIVAAHGN 210 (274)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEeCHH
Confidence 345666666542 3578999999954
No 372
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=30.22 E-value=15 Score=26.89 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=26.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++++++||.- .++......+.+.+.+. ..+..+|++|++..
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~L~~~le~~-~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMY-SKSCRFILSCNYVS 143 (319)
T ss_dssp CCCEEEEEETGG-GSCHHHHHTTGGGTSSS-SSSEEEEEEESCGG
T ss_pred CCceEEEEeCCC-cCCHHHHHHHHHHHHhc-CCCCeEEEEeCChh
Confidence 468999999963 35665555554444332 23566777787654
No 373
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=30.04 E-value=61 Score=23.84 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=10.7
Q ss_pred hCCCEEEEeCCCC
Q psy4761 77 HSPLLLILDEPTA 89 (131)
Q Consensus 77 ~~p~llilDEPt~ 89 (131)
.+.++++|||...
T Consensus 102 ~~~kIiiLDEad~ 114 (212)
T 1tue_A 102 TDTKVAMLDDATT 114 (212)
T ss_dssp TTCSSEEEEEECH
T ss_pred CCCCEEEEECCCc
Confidence 4688999999873
No 374
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=29.93 E-value=2e+02 Score=23.37 Aligned_cols=51 Identities=12% Similarity=-0.029 Sum_probs=37.0
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcC
Q psy4761 71 VAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHA 126 (131)
Q Consensus 71 iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~ 126 (131)
+..|-....+.++|+=- -|+......+.+..+ +-|..+++=.|+.+++.++
T Consensus 123 i~ea~~~GAD~ILLi~a--~l~~~~l~~l~~~a~---~lgm~~LvEvh~~eE~~~A 173 (452)
T 1pii_A 123 IYLARYYQADACLLMLS--VLDDDQYRQLAAVAH---SLEMGVLTEVSNEEEQERA 173 (452)
T ss_dssp HHHHHHTTCSEEEEETT--TCCHHHHHHHHHHHH---HTTCEEEEEECSHHHHHHH
T ss_pred HHHHHHcCCCEEEEEcc--cCCHHHHHHHHHHHH---HcCCeEEEEeCCHHHHHHH
Confidence 45577789999999854 577654444444443 4599999999999998763
No 375
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=29.92 E-value=11 Score=31.63 Aligned_cols=42 Identities=14% Similarity=0.315 Sum_probs=24.8
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+.||+|+++|-+.+..+. +...++++.+.|..++++..+.+.
T Consensus 215 ~en~~Ill~d~~I~~~~~-----l~~~le~i~~~g~~lvIi~~~I~~ 256 (545)
T 1iok_A 215 LEDAYILLHEKKLSSLQP-----MVPLLESVIQSQKPLLIVAEDVEG 256 (545)
T ss_dssp EEEEEEEECSSCBCCCCC----------------CCCCEEEESCBC-
T ss_pred ecCCeEEEEcCCcCCHHH-----HHHHHHHHHhcCCCEEEECCCcCH
Confidence 578999999999887654 556777777778899998877653
No 376
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=29.90 E-value=86 Score=19.06 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=23.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.|+++|+|--..+.|- ..+.+.+++.. .+..||++|...+
T Consensus 46 ~~dlvi~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~~~ 85 (135)
T 3eqz_A 46 KQDIIILDLMMPDMDG---IEVIRHLAEHK-SPASLILISGYDS 85 (135)
T ss_dssp TTEEEEEECCTTTTHH---HHHHHHHHHTT-CCCEEEEEESSCH
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhCC-CCCCEEEEEeccc
Confidence 4999999987766543 34445555432 3455666655443
No 377
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=29.56 E-value=7.5 Score=27.95 Aligned_cols=48 Identities=17% Similarity=0.052 Sum_probs=28.4
Q ss_pred hCCCEEEEeCCCCCCC----HHHHHHHHHHHHHhhhCCcEEEEEEcChhHHh
Q psy4761 77 HSPLLLILDEPTAGLD----PLISDTIWQHLRTLSATGVTCIITTHYIEEAR 124 (131)
Q Consensus 77 ~~p~llilDEPt~gLD----~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~ 124 (131)
.+..+||+||-=.=+. ....-.+...+...+..|..||++|+..+.+.
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~ 137 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLD 137 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBC
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHh
Confidence 3488999999522110 00111344444444456889999999965543
No 378
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=29.55 E-value=33 Score=25.87 Aligned_cols=48 Identities=8% Similarity=0.040 Sum_probs=32.8
Q ss_pred CcCCCCHHHHHHHHHHHHHhhCC--------------CEEEEeCCCC-CCCHHHHHHHHHHHH
Q psy4761 57 LCGQVSGGQQRRISVAVTMMHSP--------------LLLILDEPTA-GLDPLISDTIWQHLR 104 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~~~p--------------~llilDEPt~-gLD~~~~~~i~~~l~ 104 (131)
.+--+.+|+.|+-++.+|+-.+. -.+++||.++ .|+....+...+..+
T Consensus 198 ~vi~la~G~~Ka~ai~~al~g~~~~~~Pas~l~~h~~~~li~D~~aA~~L~~~~~~~~~~~~~ 260 (289)
T 1ne7_A 198 EVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLML 260 (289)
T ss_dssp CEEEEECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEEEEGGGGTTSBHHHHHHHHHTHH
T ss_pred EEEEEEcCHHHHHHHHHHHhCCCCccCchHHHccCCCEEEEEcHHHHhhcccchhhhhHHHHh
Confidence 34456788888999999887654 3899999997 576544444433333
No 379
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=29.54 E-value=1.7e+02 Score=21.69 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=37.0
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcC
Q psy4761 71 VAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHA 126 (131)
Q Consensus 71 iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~ 126 (131)
+..|-..+.+.++|+=- .|+... +.+++...++-|..+++=.|+.+++.++
T Consensus 116 i~ea~~~GAD~ilLi~a--~l~~~~---l~~l~~~a~~lGl~~lvEv~~~eE~~~A 166 (251)
T 1i4n_A 116 VKLASSVGADAILIIAR--ILTAEQ---IKEIYEAAEELGMDSLVEVHSREDLEKV 166 (251)
T ss_dssp HHHHHHTTCSEEEEEGG--GSCHHH---HHHHHHHHHTTTCEEEEEECSHHHHHHH
T ss_pred HHHHHHcCCCEEEEecc--cCCHHH---HHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 44577789999999855 477644 4444444444599999999999998763
No 380
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=29.48 E-value=1.3e+02 Score=24.95 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 65 QQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 65 ~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
..|+-|+..||..+|=.||.=-|=+| -...+.+++..+.+.|..|+++++.-.
T Consensus 192 ~~Q~~AV~~al~~~~~~lI~GPPGTG----KT~ti~~~I~~l~~~~~~ILv~a~TN~ 244 (646)
T 4b3f_X 192 TSQKEAVLFALSQKELAIIHGPPGTG----KTTTVVEIILQAVKQGLKVLCCAPSNI 244 (646)
T ss_dssp HHHHHHHHHHHHCSSEEEEECCTTSC----HHHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred HHHHHHHHHHhcCCCceEEECCCCCC----HHHHHHHHHHHHHhCCCeEEEEcCchH
Confidence 45566777888766666666667666 334467777777777889999998643
No 381
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=29.31 E-value=84 Score=22.11 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=22.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 80 LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 80 ~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
..+|+| +|..+.....+.+.+++........|++||.
T Consensus 58 ~~iLID---~G~~~~~~~~l~~~l~~~~~~~i~~vi~TH~ 94 (243)
T 4hl2_A 58 RVLVVD---TAWTDDQTAQILNWIKQEINLPVALAVVTHA 94 (243)
T ss_dssp EEEEES---CCSSHHHHHHHHHHHHHHTCCCEEEEEECSS
T ss_pred cEEEEE---CCCCCccHHHHHHHHHHhhCCCeeEEEECCC
Confidence 467777 3445556667777776642223566788883
No 382
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=29.16 E-value=62 Score=23.18 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=17.5
Q ss_pred HHHHHHHHHHH-hh---hCCcEEEEEEcCh
Q psy4761 95 ISDTIWQHLRT-LS---ATGVTCIITTHYI 120 (131)
Q Consensus 95 ~~~~i~~~l~~-~~---~~g~tvi~vtH~~ 120 (131)
..+++...+.+ +. ..+.+|++|||-.
T Consensus 156 ~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~ 185 (249)
T 1e58_A 156 TIDRVIPYWNETILPRMKSGERVIIAAHGN 185 (249)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcChH
Confidence 34556666666 43 2578999999964
No 383
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=29.15 E-value=77 Score=19.79 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=22.6
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-.+|+++|+|--..+.|- ..+.+.+++. ....||++|.
T Consensus 46 ~~~~dlvllD~~l~~~~g---~~l~~~l~~~--~~~~ii~ls~ 83 (136)
T 2qzj_A 46 SNKYDLIFLEIILSDGDG---WTLCKKIRNV--TTCPIVYMTY 83 (136)
T ss_dssp HCCCSEEEEESEETTEEH---HHHHHHHHTT--CCCCEEEEES
T ss_pred hcCCCEEEEeCCCCCCCH---HHHHHHHccC--CCCCEEEEEc
Confidence 367999999987766663 2344444432 1445555554
No 384
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=28.95 E-value=74 Score=19.74 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=21.3
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEE
Q psy4761 84 LDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117 (131)
Q Consensus 84 lDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vt 117 (131)
..|.+-|||+.. +.+.|+-+.++|++-|+-+
T Consensus 40 ~~~ef~gmd~~~---L~kaL~~L~k~gkA~i~~~ 70 (79)
T 3htu_A 40 EDEEFHGLDEAT---LLRALQALQQEHKAEIITV 70 (79)
T ss_dssp TTSTTTTCCHHH---HHHHHHHHHHTTSEEEECC
T ss_pred CCCcccCCCHHH---HHHHHHHHHHcCCEEEEec
Confidence 357889999865 5555555566788777754
No 385
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=28.87 E-value=63 Score=22.98 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=16.6
Q ss_pred HHHHHHHHHH-hh---hCCcEEEEEEcCh
Q psy4761 96 SDTIWQHLRT-LS---ATGVTCIITTHYI 120 (131)
Q Consensus 96 ~~~i~~~l~~-~~---~~g~tvi~vtH~~ 120 (131)
.+++...+.+ +. ..+.+|++|||-.
T Consensus 155 ~~R~~~~l~~~i~~~~~~~~~vlvVsHg~ 183 (240)
T 1qhf_A 155 IDRLLPYWQDVIAKDLLSGKTVMIAAHGN 183 (240)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEeCHH
Confidence 4456666655 43 2578899999965
No 386
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=28.86 E-value=1.1e+02 Score=18.96 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=24.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~ 119 (131)
..|+++|+|--..+.|- ..+.+.+++... .+..||++|..
T Consensus 58 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~ls~~ 98 (143)
T 2qvg_A 58 IHPKLILLDINIPKMNG---IEFLKELRDDSSFTDIEVFVLTAA 98 (143)
T ss_dssp CCCSEEEEETTCTTSCH---HHHHHHHTTSGGGTTCEEEEEESC
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHcCccccCCcEEEEeCC
Confidence 57999999987777664 234444444321 34556666543
No 387
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=28.80 E-value=69 Score=21.46 Aligned_cols=37 Identities=8% Similarity=-0.087 Sum_probs=22.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
..|+++|+|-...+.|- . +.+.+++.. ....||++|.
T Consensus 51 ~~~dlvl~D~~mp~~~g---~-l~~~~~~~~-~~~~ii~lt~ 87 (196)
T 1qo0_D 51 VPVDVVFTSIFQNRHHD---E-IAALLAAGT-PRTTLVALVE 87 (196)
T ss_dssp SCCSEEEEECCSSTHHH---H-HHHHHHHSC-TTCEEEEEEC
T ss_pred CCCCEEEEeCCCCccch---H-HHHHHhccC-CCCCEEEEEc
Confidence 58999999987766551 2 555554432 3455665554
No 388
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=28.65 E-value=70 Score=22.12 Aligned_cols=26 Identities=15% Similarity=-0.018 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhh-------CCcEEEEEEcCh
Q psy4761 95 ISDTIWQHLRTLSA-------TGVTCIITTHYI 120 (131)
Q Consensus 95 ~~~~i~~~l~~~~~-------~g~tvi~vtH~~ 120 (131)
..+.+.+.+.++.+ .+.+|++|||--
T Consensus 113 ~~~R~~~~~~~~~~~~~~~~~~~~~vlvVsHg~ 145 (202)
T 3mxo_A 113 DGARIEAAFRNYIHRADARQEEDSYEIFICHAN 145 (202)
T ss_dssp HHHHHHHHHHHHTTCCCTTCCSCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhhhhccCCCceEEEEeCHH
Confidence 34556667776653 257899999953
No 389
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=28.65 E-value=1.1e+02 Score=19.01 Aligned_cols=43 Identities=12% Similarity=0.019 Sum_probs=34.2
Q ss_pred hCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 77 HSPLLLILD-EPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 77 ~~p~llilD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
..+ -+++| .-.+.+|......+....+++++.|..+.++.-..
T Consensus 41 ~~~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~ 84 (117)
T 4hyl_A 41 AKG-KMILDLREVSYMSSAGLRVLLSLYRHTSNQQGALVLVGVSE 84 (117)
T ss_dssp TTC-EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred cCC-eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 344 78888 56788999999999999999888888887776544
No 390
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.61 E-value=89 Score=23.39 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=29.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.+++++++||.- .+.......+...+.+.. ....+|++|+...
T Consensus 109 ~~~~viiiDe~~-~l~~~~~~~L~~~le~~~-~~~~~il~~n~~~ 151 (340)
T 1sxj_C 109 KGFKLIILDEAD-AMTNAAQNALRRVIERYT-KNTRFCVLANYAH 151 (340)
T ss_dssp CSCEEEEETTGG-GSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred CCceEEEEeCCC-CCCHHHHHHHHHHHhcCC-CCeEEEEEecCcc
Confidence 358999999974 355667777777776653 3456777777653
No 391
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=28.58 E-value=26 Score=28.77 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=31.3
Q ss_pred hhCCCEEEEeCCCC-------------CCCH------HHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 76 MHSPLLLILDEPTA-------------GLDP------LISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 76 ~~~p~llilDEPt~-------------gLD~------~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+.||+|+++|-|.. ..+. ...+.+...++++.+.|..++++.-+.+.
T Consensus 185 i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~ 250 (500)
T 3aq1_B 185 VENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDD 250 (500)
T ss_dssp EEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTCCSEEEESSCBCH
T ss_pred ccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEECCCcCH
Confidence 57999999999932 1111 12223577888887789999999877654
No 392
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=28.50 E-value=92 Score=22.77 Aligned_cols=33 Identities=12% Similarity=0.300 Sum_probs=25.6
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEE
Q psy4761 85 DEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117 (131)
Q Consensus 85 DEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vt 117 (131)
|+-..++|+...+.+.+.|.++++.|.-+++|+
T Consensus 23 ~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~ 55 (243)
T 3ek6_A 23 GDGDYGIDPKVINRLAHEVIEAQQAGAQVALVI 55 (243)
T ss_dssp TTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 333457999999999999999988787666665
No 393
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=28.38 E-value=73 Score=20.16 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=17.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
..|+++|+|--..+.| ...+.+.+++.. .+..||++|.
T Consensus 49 ~~~dlvi~d~~l~~~~---g~~~~~~l~~~~-~~~~ii~ls~ 86 (154)
T 2qsj_A 49 NTVDLILLDVNLPDAE---AIDGLVRLKRFD-PSNAVALISG 86 (154)
T ss_dssp CCCSEEEECC---------CHHHHHHHHHHC-TTSEEEEC--
T ss_pred CCCCEEEEeCCCCCCc---hHHHHHHHHHhC-CCCeEEEEeC
Confidence 5799999997665443 233444554432 2455555544
No 394
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=28.32 E-value=94 Score=22.17 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh----------hCCcEEEEEEcC
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLS----------ATGVTCIITTHY 119 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~----------~~g~tvi~vtH~ 119 (131)
+..+|++||.- .+++.....+...+.+-. ..+..+|++|+.
T Consensus 100 ~~~~l~lDEi~-~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 100 DGGTLFLDELA-TAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp TTSEEEEESGG-GSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred CCcEEEEechH-hcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 56899999975 467777788888876531 234567888875
No 395
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=28.31 E-value=29 Score=28.87 Aligned_cols=48 Identities=10% Similarity=0.261 Sum_probs=32.5
Q ss_pred hhCCCEEEEeCCCCC----------C-CHHH--------HHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 76 MHSPLLLILDEPTAG----------L-DPLI--------SDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 76 ~~~p~llilDEPt~g----------L-D~~~--------~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
+.||+|+++|-|..- + ++.. .+.+...++++.+.|..++++.-+.+..
T Consensus 234 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~ 300 (548)
T 1q3q_A 234 VENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDL 300 (548)
T ss_dssp ESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHH
T ss_pred ecCCEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCcCHH
Confidence 689999999999322 1 1222 2335777777777788899998776543
No 396
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=28.26 E-value=9.1 Score=25.44 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=23.7
Q ss_pred CCCEEEEeCCCCCC----CHHHHHHHHHHHHHhhhC-CcEEEEEEcChh
Q psy4761 78 SPLLLILDEPTAGL----DPLISDTIWQHLRTLSAT-GVTCIITTHYIE 121 (131)
Q Consensus 78 ~p~llilDEPt~gL----D~~~~~~i~~~l~~~~~~-g~tvi~vtH~~~ 121 (131)
+|.++++||--.-. +......+.+.+..+.+. +..+|.+|+..+
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~ 163 (187)
T 2p65_A 115 GQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSE 163 (187)
T ss_dssp TSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHH
T ss_pred CceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHH
Confidence 57899999952211 011113344555554444 466777776543
No 397
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=28.21 E-value=1.1e+02 Score=20.51 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=24.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
..|+++|+|--..+.|- -.+.+.+++.. .+..||++|..
T Consensus 47 ~~~dlvl~D~~lp~~~g---~~~~~~l~~~~-~~~~ii~ls~~ 85 (208)
T 1yio_A 47 EQHGCLVLDMRMPGMSG---IELQEQLTAIS-DGIPIVFITAH 85 (208)
T ss_dssp TSCEEEEEESCCSSSCH---HHHHHHHHHTT-CCCCEEEEESC
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhcC-CCCCEEEEeCC
Confidence 57999999987777764 23444554432 34555555543
No 398
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=28.20 E-value=1e+02 Score=22.50 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=37.0
Q ss_pred cCCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 58 CGQVSGGQQRRISVAVTMMH--SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~--~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+..++.+..++.+.+..+. .|+++=++ -+...+.... .+++...++.|..||++.||.
T Consensus 75 GG~~~~~~~~~~~ll~~~~~~~~~d~iDvE-l~~~~~~~~~---~~l~~~~~~~~~kvI~S~Hdf 135 (238)
T 1sfl_A 75 GGYGQFTNDSYLNLISDLANINGIDMIDIE-WQADIDIEKH---QRIITHLQQYNKEVIISHHNF 135 (238)
T ss_dssp TSCBCCCHHHHHHHHHHGGGCTTCCEEEEE-CCTTSCHHHH---HHHHHHHHHTTCEEEEEEEES
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEEE-ccCCCChHHH---HHHHHHHHhcCCEEEEEecCC
Confidence 44566778888888888884 47766554 3332243333 334444445678899999974
No 399
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=28.05 E-value=57 Score=23.45 Aligned_cols=26 Identities=4% Similarity=-0.003 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhh----hCCcEEEEEEcCh
Q psy4761 95 ISDTIWQHLRTLS----ATGVTCIITTHYI 120 (131)
Q Consensus 95 ~~~~i~~~l~~~~----~~g~tvi~vtH~~ 120 (131)
...++...+.++. ..+.+|++|||-.
T Consensus 165 ~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~ 194 (258)
T 3kkk_A 165 TVERVLPFWFDHIAPDILANKKVMVAAHGN 194 (258)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHhhhccCCCEEEEEcCHH
Confidence 3445666666642 3578999999964
No 400
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=28.03 E-value=47 Score=27.43 Aligned_cols=47 Identities=28% Similarity=0.330 Sum_probs=32.4
Q ss_pred hhCCCEEEEeCCCCCC-----------CH--------HHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 76 MHSPLLLILDEPTAGL-----------DP--------LISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 76 ~~~p~llilDEPt~gL-----------D~--------~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+.+|+++++|-|...- |+ ...+.+.+.++++.+.|..++++.-+.+.
T Consensus 223 ien~kIlll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d 288 (529)
T 3iyg_A 223 IVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDD 288 (529)
T ss_pred cCCceEEEecCCcccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 4689999999986321 11 12234667777777789999999877653
No 401
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=28.00 E-value=1.1e+02 Score=18.85 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=25.1
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcC
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHY 119 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~ 119 (131)
-..|+++|+|--..+.|- ..+.+.+++.. .....||++|..
T Consensus 49 ~~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 49 KGFSGVVLLDIMMPGMDG---WDTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp TCCCEEEEEESCCSSSCH---HHHHHHHHHTTCCTTEEEEEEECT
T ss_pred hcCCCEEEEeCCCCCCCH---HHHHHHHHhhcccCCCCEEEEECC
Confidence 357999999987777664 23455555421 234556666654
No 402
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=28.00 E-value=25 Score=23.09 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=24.4
Q ss_pred hCCCEEEEeCCCCCCCH---HHHHHHHHHHHHhhh-CCcEEEEEEcChh
Q psy4761 77 HSPLLLILDEPTAGLDP---LISDTIWQHLRTLSA-TGVTCIITTHYIE 121 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~---~~~~~i~~~l~~~~~-~g~tvi~vtH~~~ 121 (131)
.+|.++++||--.-.+. .....+.+.+..+.+ .+..+|++|+...
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 162 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHH
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHH
Confidence 45779999997432211 111223444555443 3567778777654
No 403
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=27.81 E-value=1.2e+02 Score=19.15 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=24.1
Q ss_pred hCC-CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 77 HSP-LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 77 ~~p-~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+| +++|+|--..+.|- ..+.+.+++.. .+..||++|...
T Consensus 46 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~~ 86 (151)
T 3kcn_A 46 SDPFSVIMVDMRMPGMEG---TEVIQKARLIS-PNSVYLMLTGNQ 86 (151)
T ss_dssp SCCCSEEEEESCCSSSCH---HHHHHHHHHHC-SSCEEEEEECGG
T ss_pred CCCCCEEEEeCCCCCCcH---HHHHHHHHhcC-CCcEEEEEECCC
Confidence 456 99999988777764 33444555432 345555555433
No 404
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=27.80 E-value=52 Score=22.97 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhh----CCcEEEEEEcCh
Q psy4761 96 SDTIWQHLRTLSA----TGVTCIITTHYI 120 (131)
Q Consensus 96 ~~~i~~~l~~~~~----~g~tvi~vtH~~ 120 (131)
..++.+.+.++.+ .+.+|++|||..
T Consensus 137 ~~R~~~~l~~l~~~~~~~~~~vlvVsHg~ 165 (211)
T 1fzt_A 137 AERVLPYYKSTIVPHILKGEKVLIAAHGN 165 (211)
T ss_dssp HHHHHHHHHHHHTTHHHHTCCEEEESCHH
T ss_pred HHHHHHHHHHHHhhhhcCCCeEEEEeChH
Confidence 3456666766532 367899999974
No 405
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=27.79 E-value=72 Score=25.05 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 87 PTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 87 Pt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
+..++|......+.+.|.++++.|.-+++|++
T Consensus 19 ~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~g 50 (367)
T 2j5v_A 19 GSRRLNRAHIVELVRQCAQLHAAGHRIVIVTS 50 (367)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 44679999999999999999888888888876
No 406
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=27.65 E-value=18 Score=30.19 Aligned_cols=42 Identities=19% Similarity=0.426 Sum_probs=32.4
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+.||+|+++|-+.+..+ ++...++++.+.|..++++..+.+.
T Consensus 214 lenp~Ill~d~~Is~~~-----~l~~~le~i~~~g~~lvIi~~~I~~ 255 (547)
T 1kp8_A 214 LESPFILLADKKISNIR-----EMLPVLEAVAKAGKPLLIIAEDVEG 255 (547)
T ss_dssp EESCEEECEESEECCGG-----GTHHHHHHHHGGGCCEEEEESEECH
T ss_pred ecCceEEEEcCcCCCHH-----HHHHHHHHHHhcCCCEEEECCCcCH
Confidence 47999999999877543 3667777777778889998877643
No 407
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=27.26 E-value=12 Score=25.69 Aligned_cols=35 Identities=3% Similarity=0.004 Sum_probs=21.9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 82 LILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 82 lilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
+..|+-....|++. +.+.+ ++.+.+.+|++|||..
T Consensus 83 ~~~~~~l~e~~~e~---~~~~l-~~~~~~~~vlvVsH~~ 117 (173)
T 2rfl_A 83 IVYIDEMYNARSET---YLSLI-AAQTEVQSVMLVGHNP 117 (173)
T ss_dssp EEECGGGSSCSSSC---SHHHH-HTCTTCSEEEEEECTT
T ss_pred eEECHhHhcCCHHH---HHHHH-hCCCCCCeEEEEeCCH
Confidence 45565555555533 34445 5544578999999985
No 408
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=27.23 E-value=60 Score=23.71 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=17.7
Q ss_pred HHHHHHHHHHH-hh---hCCcEEEEEEcCh
Q psy4761 95 ISDTIWQHLRT-LS---ATGVTCIITTHYI 120 (131)
Q Consensus 95 ~~~~i~~~l~~-~~---~~g~tvi~vtH~~ 120 (131)
...++...+.+ +. ..|.+|++|||-.
T Consensus 161 ~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~ 190 (267)
T 2hhj_A 161 VLERLLPYWNERIAPEVLRGKTILISAHGN 190 (267)
T ss_dssp HHHHHHHHHHHHTHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcCcH
Confidence 34556666666 43 2578999999964
No 409
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=27.13 E-value=1.5e+02 Score=20.17 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=24.1
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-..|+++|+|--..+.|-. .+.+.+++.. .+..||++|.
T Consensus 49 ~~~~dlvllD~~l~~~~g~---~~~~~l~~~~-~~~~ii~lt~ 87 (233)
T 1ys7_A 49 ENRPDAIVLDINMPVLDGV---SVVTALRAMD-NDVPVCVLSA 87 (233)
T ss_dssp HSCCSEEEEESSCSSSCHH---HHHHHHHHTT-CCCCEEEEEC
T ss_pred hCCCCEEEEeCCCCCCCHH---HHHHHHHhcC-CCCCEEEEEc
Confidence 3689999999877777642 3444554432 3455555554
No 410
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio} PDB: 3e9d_A 3e9e_A
Probab=26.90 E-value=61 Score=23.62 Aligned_cols=11 Identities=18% Similarity=0.304 Sum_probs=9.1
Q ss_pred CcEEEEEEcCh
Q psy4761 110 GVTCIITTHYI 120 (131)
Q Consensus 110 g~tvi~vtH~~ 120 (131)
+.+|++|||--
T Consensus 175 ~~~vlvVsHg~ 185 (265)
T 3e9c_A 175 PVHALMVSHGA 185 (265)
T ss_dssp CCEEEEEECHH
T ss_pred CCeEEEEeCHH
Confidence 67999999954
No 411
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=26.84 E-value=1.3e+02 Score=19.41 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=23.2
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-..|+++|+|--..+.|- ..+.+.+++.. ...+|++|-
T Consensus 69 ~~~~dlvilD~~l~~~~g---~~l~~~lr~~~--~~~ii~~s~ 106 (164)
T 3t8y_A 69 ELKPDVITMDIEMPNLNG---IEALKLIMKKA--PTRVIMVSS 106 (164)
T ss_dssp HHCCSEEEECSSCSSSCH---HHHHHHHHHHS--CCEEEEEES
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CceEEEEec
Confidence 357999999988777764 33444555432 244555543
No 412
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=26.78 E-value=84 Score=21.84 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=28.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHHhcCCcccC
Q psy4761 79 PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVPI 131 (131)
Q Consensus 79 p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~~~~dri~~ 131 (131)
.+|+|+|==..++ ..+.+.|++ -|..+.+ +++.+++..+|.|++
T Consensus 3 ~~I~iiD~g~~n~-----~si~~al~~---~G~~~~v-~~~~~~l~~~D~lil 46 (211)
T 4gud_A 3 QNVVIIDTGCANI-----SSVKFAIER---LGYAVTI-SRDPQVVLAADKLFL 46 (211)
T ss_dssp CCEEEECCCCTTH-----HHHHHHHHH---TTCCEEE-ECCHHHHHHCSEEEE
T ss_pred CEEEEEECCCChH-----HHHHHHHHH---CCCEEEE-ECCHHHHhCCCEEEE
Confidence 4788988544432 334445544 4665554 578899999998864
No 413
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=26.72 E-value=87 Score=25.69 Aligned_cols=47 Identities=13% Similarity=0.285 Sum_probs=31.4
Q ss_pred hhCCCEEEEeCCCCCCC------------HHH--------HHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 76 MHSPLLLILDEPTAGLD------------PLI--------SDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD------------~~~--------~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+.||+|+++|-|...-- +.. .+.+.+.++++.+.|..++++.-+.+.
T Consensus 219 ~en~kIll~~~~Le~~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~ 285 (513)
T 3iyg_B 219 IENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYN 285 (513)
T ss_pred ecCceEEEEcCCcccccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccH
Confidence 67999999998754211 111 223445677777779999999877653
No 414
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=26.70 E-value=1.1e+02 Score=18.54 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=24.1
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH 118 (131)
-.+|+++|+|=-..+.|- -.+.+.+++... .+..||++|.
T Consensus 44 ~~~~dlvllD~~~p~~~g---~~~~~~l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 44 EFTPDLIVLXIMMPVMDG---FTVLKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp TBCCSEEEECSCCSSSCH---HHHHHHHHTSTTTTTSCEEEEES
T ss_pred hcCCCEEEEeccCCCCcH---HHHHHHHHhcccccCCCEEEEec
Confidence 468999999987777774 234444443221 2445555554
No 415
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=26.60 E-value=57 Score=25.94 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhHH
Q psy4761 65 QQRRISVAVTMMHSPLLLILDEPTA-GLDPLISDTIWQHLRTLSATGVTCIITTHYIEEA 123 (131)
Q Consensus 65 ~~qrl~iaral~~~p~llilDEPt~-gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~~ 123 (131)
+.+....+...+.+++++|+..... ++.... ..+.+.+ ++.++.++++.+..+..
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l---~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKIL---YRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHH---TTCCSCEEEEEECC---
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHH---HHcCCCEEEEEECccch
Confidence 6777778888888898888776544 455543 3444444 34578888888876654
No 416
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=26.34 E-value=18 Score=27.46 Aligned_cols=57 Identities=18% Similarity=0.031 Sum_probs=33.7
Q ss_pred HHHhcCCCC-CCCCcCCCC-HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy4761 45 ISLLNGLPD-PNSLCGQVS-GGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106 (131)
Q Consensus 45 ~~~~~~l~~-~~~~~~~LS-~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~ 106 (131)
++..+|.+. +--+.+.|+ .-|-+- +|.|-+. -.+ .=|||.|+|..+...+.++..+.
T Consensus 153 ml~dmG~~SvKffPm~Gl~~l~E~~a--vAka~a~-~g~--~lEPTGGIdl~N~~~I~~i~l~a 211 (249)
T 3m0z_A 153 LLKDMGGSSIKYFPMGGLKHRAEFEA--VAKACAA-HDF--WLEPTGGIDLENYSEILKIALDA 211 (249)
T ss_dssp HHHHTTCCEEEECCCTTTTTHHHHHH--HHHHHHH-TTC--EEEEBSSCCTTTHHHHHHHHHHH
T ss_pred HHHHcCCCeeeEeecCCcccHHHHHH--HHHHHHH-cCc--eECCCCCccHhhHHHHHHHHHHc
Confidence 445556543 233444443 344443 4444444 334 33999999999988888877664
No 417
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=26.28 E-value=1.1e+02 Score=22.15 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=25.0
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEE
Q psy4761 85 DEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117 (131)
Q Consensus 85 DEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vt 117 (131)
|+.+.++|+.....+.+.|.++.+.|.-+++|+
T Consensus 21 ~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVh 53 (252)
T 1z9d_A 21 GEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVI 53 (252)
T ss_dssp CSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 334567889899999999999887776666655
No 418
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=26.16 E-value=1.2e+02 Score=18.59 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=22.6
Q ss_pred hCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTA-GLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~-gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+|+++|+|--.. +.|. ..+.+.+++. .+..||++|.
T Consensus 53 ~~~dlii~d~~~~~~~~g---~~~~~~l~~~--~~~~ii~ls~ 90 (140)
T 3cg0_A 53 LRPDIALVDIMLCGALDG---VETAARLAAG--CNLPIIFITS 90 (140)
T ss_dssp HCCSEEEEESSCCSSSCH---HHHHHHHHHH--SCCCEEEEEC
T ss_pred CCCCEEEEecCCCCCCCH---HHHHHHHHhC--CCCCEEEEec
Confidence 5799999997765 5663 2344555554 3444555544
No 419
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=25.98 E-value=95 Score=20.95 Aligned_cols=33 Identities=6% Similarity=-0.051 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhCCcEEEEEEcCh-h-HHhcCCcc
Q psy4761 97 DTIWQHLRTLSATGVTCIITTHYI-E-EARHAHKV 129 (131)
Q Consensus 97 ~~i~~~l~~~~~~g~tvi~vtH~~-~-~~~~~dri 129 (131)
..+.+.++..++.|..+|.+|.+. . ....||.+
T Consensus 93 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~ 127 (186)
T 1m3s_A 93 KSLIHTAAKAKSLHGIVAALTINPESSIGKQADLI 127 (186)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEE
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEE
Confidence 446667777777888888888764 2 33447754
No 420
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=25.85 E-value=48 Score=24.37 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=28.7
Q ss_pred CcCCCCHHHHHHHHHHHHHhhCC--------------CEEEEeCCCC-CCCHH
Q psy4761 57 LCGQVSGGQQRRISVAVTMMHSP--------------LLLILDEPTA-GLDPL 94 (131)
Q Consensus 57 ~~~~LS~G~~qrl~iaral~~~p--------------~llilDEPt~-gLD~~ 94 (131)
.+--+.+|+.|.-+|.+++-.+. ..+++||.++ .|+..
T Consensus 198 ~vi~va~G~~Ka~ai~~al~g~~~~~~Pas~l~~~~~~~li~D~~aA~~L~~~ 250 (266)
T 1fs5_A 198 EVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVK 250 (266)
T ss_dssp CEEEEECSGGGHHHHHHHHHSCCCSSSGGGGGGGCSSEEEEECSGGGTTSBHH
T ss_pred EEEEEecChHHHHHHHHHhcCCCCCcCChHHHccCCCEEEEEeHHHhhhcccc
Confidence 34456789999999998887543 6799999997 46644
No 421
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=25.76 E-value=24 Score=27.96 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=25.7
Q ss_pred CCCEEEEeCCCCCCCH-----H---------------HHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 78 SPLLLILDEPTAGLDP-----L---------------ISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 78 ~p~llilDEPt~gLD~-----~---------------~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
.-+++++|=|++|... . .+..+++...++.+.|..++++|..
T Consensus 315 ~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp CEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred CCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 3589999999998642 1 1123333333333567788888843
No 422
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=25.64 E-value=18 Score=27.69 Aligned_cols=57 Identities=16% Similarity=0.030 Sum_probs=33.0
Q ss_pred HHHhcCCCC-CCCCcCCCC-HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q psy4761 45 ISLLNGLPD-PNSLCGQVS-GGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106 (131)
Q Consensus 45 ~~~~~~l~~-~~~~~~~LS-~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~ 106 (131)
++..+|.+. +--+.+.|+ .-|-+-++ .|-+. -.+ .=|||.|+|..+...|.++..+.
T Consensus 176 ml~dmG~~SvKffPM~Gl~~leEl~avA--kAca~-~g~--~lEPTGGIdl~Nf~~I~~i~l~a 234 (275)
T 3m6y_A 176 LVRDMGGNSLKYFPMKGLAHEEEYRAVA--KACAE-EGF--ALEPTGGIDKENFETIVRIALEA 234 (275)
T ss_dssp HHHHHTCCEEEECCCTTTTTHHHHHHHH--HHHHH-HTC--EEEEBSSCCTTTHHHHHHHHHHT
T ss_pred HHHHcCCCeeeEeecCCcccHHHHHHHH--HHHHH-cCc--eECCCCCccHhHHHHHHHHHHHc
Confidence 445556543 233444443 34444444 44333 233 33999999999988888777653
No 423
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=25.57 E-value=1.3e+02 Score=18.92 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=22.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEE
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITT 117 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vt 117 (131)
..|+++|+|--..+.|- ..+.+.+++... .+..||++|
T Consensus 60 ~~~dlillD~~lp~~~g---~~l~~~l~~~~~~~~~piiils 98 (149)
T 1i3c_A 60 PRPNLILLDLNLPKKDG---REVLAEIKQNPDLKRIPVVVLT 98 (149)
T ss_dssp CCCSEEEECSCCSSSCH---HHHHHHHHHCTTTTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCcH---HHHHHHHHhCcCcCCCeEEEEE
Confidence 36999999988777774 234455554321 234444444
No 424
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=25.48 E-value=1.2e+02 Score=18.54 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=24.6
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-hhCCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~-~~~g~tvi~vtH~ 119 (131)
..|+++|+|--..+.|. ..+.+.+++. ...+..||++|..
T Consensus 53 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 53 VKPDVVMLDLMMVGMDG---FSICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp TCCSEEEEETTCTTSCH---HHHHHHHHTSTTTTTSEEEEEESS
T ss_pred cCCCEEEEecccCCCcH---HHHHHHHHhCccccCCcEEEEeCC
Confidence 57999999987777664 2344555442 1234556666543
No 425
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=25.42 E-value=2.1 Score=32.71 Aligned_cols=32 Identities=3% Similarity=-0.253 Sum_probs=26.0
Q ss_pred HHHHHHhcCCC--CCCCCcCCCCHHHHHHHHHHH
Q psy4761 42 PWYISLLNGLP--DPNSLCGQVSGGQQRRISVAV 73 (131)
Q Consensus 42 ~~~~~~~~~l~--~~~~~~~~LS~G~~qrl~iar 73 (131)
...+++.+++. ..++++..|||..+|+++|||
T Consensus 267 v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 267 VKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678888996 367889999999999999986
No 426
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=25.41 E-value=1.2e+02 Score=21.92 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=24.8
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEE
Q psy4761 85 DEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117 (131)
Q Consensus 85 DEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vt 117 (131)
|+.+.++|+.....+.+.|.++.+.|.-+++|+
T Consensus 22 ~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVh 54 (247)
T 2a1f_A 22 GEDGLGIDPAILDRMAVEIKELVEMGVEVSVVL 54 (247)
T ss_dssp CTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 333567899999999999998877776665555
No 427
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=24.99 E-value=1.8e+02 Score=21.02 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=31.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-h----------------CCcEEEEEEcChh
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLS-A----------------TGVTCIITTHYIE 121 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~----------------~g~tvi~vtH~~~ 121 (131)
.++.++++||.- .++......+...+.+.. . .+..+|.+|+...
T Consensus 89 ~~~~~l~lDEi~-~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~ 149 (324)
T 1hqc_A 89 EEGDILFIDEIH-RLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG 149 (324)
T ss_dssp CTTCEEEETTTT-SCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS
T ss_pred cCCCEEEEECCc-ccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc
Confidence 478999999975 567777778888777642 0 1356778887654
No 428
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=24.94 E-value=1.6e+02 Score=20.72 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=26.3
Q ss_pred CCCEEEEeC-CCCCCCHH-HHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 78 SPLLLILDE-PTAGLDPL-ISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 78 ~p~llilDE-Pt~gLD~~-~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
+.+++++|= =|- +|.. ......+.|++++++|..++++|-
T Consensus 5 ~~kli~~DlDGTL-l~~~~~~~~~~~ai~~l~~~Gi~v~laTg 46 (266)
T 3pdw_A 5 TYKGYLIDLDGTM-YNGTEKIEEACEFVRTLKDRGVPYLFVTN 46 (266)
T ss_dssp CCSEEEEECSSST-TCHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCEEEEeCcCce-EeCCEeCccHHHHHHHHHHCCCeEEEEeC
Confidence 467888872 222 3322 223467888888888999999876
No 429
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=24.92 E-value=61 Score=22.30 Aligned_cols=37 Identities=14% Similarity=0.306 Sum_probs=20.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 80 LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 80 ~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
..+|+|=. .+......+.+.+.+........|++||-
T Consensus 41 ~~iLiD~G---~~~~~~~~~~~~l~~~~~~~i~~ii~TH~ 77 (219)
T 3l6n_A 41 GVVLFDVP---WEKVQYQSLMDTIKKRHNLPVVAVFATHS 77 (219)
T ss_dssp EEEEESCC---SSGGGHHHHHHHHHHHHSCCEEEEECSSS
T ss_pred EEEEEeCC---CChHHHHHHHHHHHHhcCCceeEEEecCC
Confidence 45666633 33334455666665533345667788883
No 430
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=24.61 E-value=83 Score=25.87 Aligned_cols=48 Identities=13% Similarity=0.288 Sum_probs=31.9
Q ss_pred HhhCCCEEEEeCCCCC----------C-CHHH--------HHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 75 MMHSPLLLILDEPTAG----------L-DPLI--------SDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 75 l~~~p~llilDEPt~g----------L-D~~~--------~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
-+.||+|+++|-|... + ++.. .+.+...+.++.+.|..++++.-..+.
T Consensus 222 ~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~d 288 (515)
T 3iyg_H 222 KYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGD 288 (515)
T ss_pred cccccEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcccH
Confidence 3679999999987432 1 1122 233567777777778999988766544
No 431
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=24.59 E-value=74 Score=22.26 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=21.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 80 LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 80 ~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
..+++|= |........+.+.+++........|++||.
T Consensus 47 ~~iLiD~---G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~ 83 (232)
T 1a7t_A 47 QAALLDT---PINDAQTEMLVNWVTDSLHAKVTTFIPNHW 83 (232)
T ss_dssp EEEEESC---CSSHHHHHHHHHHHHHHHCCEEEEEECSSS
T ss_pred EEEEEeC---CCCHHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 4667773 333444556666666543234566777873
No 432
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=24.49 E-value=1.3e+02 Score=18.55 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=22.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
..|+++|+|--..+.|- ..+.+.+++. .....||++|..
T Consensus 54 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~-~~~~~ii~~s~~ 92 (143)
T 2qv0_A 54 NKVDAIFLDINIPSLDG---VLLAQNISQF-AHKPFIVFITAW 92 (143)
T ss_dssp CCCSEEEECSSCSSSCH---HHHHHHHTTS-TTCCEEEEEESC
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHcc-CCCceEEEEeCC
Confidence 57999999987776663 2333444332 123446666654
No 433
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=24.41 E-value=86 Score=22.32 Aligned_cols=25 Identities=8% Similarity=0.015 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhhC--C-cEEEEEEcCh
Q psy4761 96 SDTIWQHLRTLSAT--G-VTCIITTHYI 120 (131)
Q Consensus 96 ~~~i~~~l~~~~~~--g-~tvi~vtH~~ 120 (131)
.+++.+.+.++.++ + .+|++|||..
T Consensus 138 ~~Rv~~~l~~l~~~~~~~~~vlvVsHg~ 165 (219)
T 2qni_A 138 QARIVEAVKAVLDRHDARQPIAFVGHGG 165 (219)
T ss_dssp HHHHHHHHHHHHHTCCTTSCEEEEECHH
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeCHH
Confidence 35566777776532 3 5899999974
No 434
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=24.27 E-value=1.3e+02 Score=21.85 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=24.5
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEE
Q psy4761 85 DEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117 (131)
Q Consensus 85 DEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vt 117 (131)
|+.+.++|+.....+.+.|.++.+.|.-+++|+
T Consensus 26 ~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~ 58 (255)
T 2jjx_A 26 DQTGNSFNSKRLEHIANEILSIVDLGIEVSIVI 58 (255)
T ss_dssp CSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 334567889999999999998877776555554
No 435
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=24.14 E-value=2.2e+02 Score=21.87 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=33.0
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh--CCcEEEEEEc
Q psy4761 68 RISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA--TGVTCIITTH 118 (131)
Q Consensus 68 rl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~--~g~tvi~vtH 118 (131)
.++++.+|+..|+++++=| ...|. +.+.+.+++..+ ++.+||+++-
T Consensus 175 ~lA~~a~la~ga~~iliPE--~~~~~---~~~~~~i~~~~~~g~~~~iivvaE 222 (319)
T 4a3s_A 175 DIALWAGLAGGAESILIPE--ADYDM---HEIIARLKRGHERGKKHSIIIVAE 222 (319)
T ss_dssp HHHHHHHHHHTCSEEEBTT--BCCCH---HHHHHHHHHHHTTTCCCEEEEEET
T ss_pred HHHHHHHhccCCCEEEecC--CCCCH---HHHHHHHHHHHHcCCCceEEEEEC
Confidence 7899999999999999955 34454 445666666543 3567888875
No 436
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=24.13 E-value=51 Score=21.55 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=24.3
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-.+|+++|+|==.-|+|-. .+.+.++ +.+.-||++|-
T Consensus 51 ~~~~DlvllDi~mP~~~G~---el~~~lr---~~~ipvI~lTa 87 (123)
T 2lpm_A 51 KGQFDIAIIDVNLDGEPSY---PVADILA---ERNVPFIFATG 87 (123)
T ss_dssp HCCSSEEEECSSSSSCCSH---HHHHHHH---HTCCSSCCBCT
T ss_pred hCCCCEEEEecCCCCCCHH---HHHHHHH---cCCCCEEEEec
Confidence 4789999999988888743 2444444 34555665553
No 437
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=24.11 E-value=84 Score=18.93 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=22.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEE-EEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCI-ITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi-~vtH~ 119 (131)
.+|+++|+|--..+.|- ..+.+.+++.. ..+..|| ++++.
T Consensus 45 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (127)
T 2jba_A 45 PWPDLILLAWMLPGGSG---IQFIKHLRRESMTRDIPVVMLTARG 86 (127)
T ss_dssp SCCSEEEEESEETTEEH---HHHHHHHHTSTTTTTSCEEEEEETT
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHhCcccCCCCEEEEeCCC
Confidence 46999999987666653 23444444322 1234444 45544
No 438
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=24.10 E-value=66 Score=22.15 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=31.8
Q ss_pred hCCCEEEEeCCCCCCC-------------------HHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 77 HSPLLLILDEPTAGLD-------------------PLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 77 ~~p~llilDEPt~gLD-------------------~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
.||+|+++|=|...-- ....+.+.+.+.++.+.|..|+++.-.++.
T Consensus 20 ~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~I~d 84 (159)
T 1ass_A 20 KNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDD 84 (159)
T ss_dssp EEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESSCBCH
T ss_pred CCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEECCccCH
Confidence 6899999998865321 122334677777777789999988765543
No 439
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=24.03 E-value=1.2e+02 Score=18.16 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=23.3
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH 118 (131)
-..|+++++|--..+.|- ..+.+.+++... ....||++|.
T Consensus 47 ~~~~dlvi~D~~l~~~~g---~~l~~~l~~~~~~~~~~ii~~s~ 87 (128)
T 1jbe_A 47 AGGYGFVISDWNMPNMDG---LELLKTIRAXXAMSALPVLMVTA 87 (128)
T ss_dssp TCCCCEEEEESCCSSSCH---HHHHHHHHC--CCTTCCEEEEES
T ss_pred hcCCCEEEEeCCCCCCCH---HHHHHHHHhhcccCCCcEEEEec
Confidence 357999999988877774 234444444211 2344555554
No 440
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=23.87 E-value=1.2e+02 Score=23.88 Aligned_cols=60 Identities=10% Similarity=0.113 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 60 QVSGGQQRRISVAVTMMHSP--LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~~p--~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
....|.. .+.+|+-... .|||-|+-...=|+..+..+.+++....+.|..|.++|.+-+.
T Consensus 297 ~a~yG~~---eV~~Ale~GAVetLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ivs~~~e~ 358 (386)
T 2vgn_A 297 KAWYGEK---EVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSL 358 (386)
T ss_dssp SEEESHH---HHHHHHHTTCEEEEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECTTSHH
T ss_pred cEEeCHH---HHHHHHHcCCcEEEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 4445543 3455555554 6777777666668877777656665555678889888876543
No 441
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=23.87 E-value=65 Score=24.90 Aligned_cols=42 Identities=14% Similarity=0.007 Sum_probs=25.0
Q ss_pred CCCEEEEeCCCCCCCHHH-------HHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 78 SPLLLILDEPTAGLDPLI-------SDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~-------~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
..+++++|-|..+.+... ...+.....++.+.|..++++++.
T Consensus 279 ~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 279 RFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 569999999997765422 222333333333456667777654
No 442
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=23.85 E-value=1.1e+02 Score=21.33 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=17.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 81 LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 81 llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+|+| +|..+...+.+.+.+++.......-|++||
T Consensus 42 ~iLiD---~G~~~~~~~~l~~~l~~~~~~~~~~vi~TH 76 (246)
T 2fhx_A 42 VVIVS---SPFENLGTQTLMDWVAKTMKPKKVVAINTH 76 (246)
T ss_dssp EEEES---CCSSHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred EEEEe---CCCCHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 66677 244444555566666553211111245666
No 443
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=23.81 E-value=1.2e+02 Score=18.03 Aligned_cols=39 Identities=23% Similarity=0.209 Sum_probs=24.4
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
-.+|+++|+|--..+.|-. .+.+.+++. .+..+|++|..
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~--~~~~ii~~s~~ 83 (123)
T 1xhf_A 45 EYDINLVIMDINLPGKNGL---LLARELREQ--ANVALMFLTGR 83 (123)
T ss_dssp HSCCSEEEECSSCSSSCHH---HHHHHHHHH--CCCEEEEEESC
T ss_pred cCCCCEEEEcCCCCCCCHH---HHHHHHHhC--CCCcEEEEECC
Confidence 3679999999877777642 344445443 34556655543
No 444
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=23.74 E-value=72 Score=21.45 Aligned_cols=33 Identities=6% Similarity=-0.017 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhhCCcEEEEEEcChhHHh-cCCcc
Q psy4761 97 DTIWQHLRTLSATGVTCIITTHYIEEAR-HAHKV 129 (131)
Q Consensus 97 ~~i~~~l~~~~~~g~tvi~vtH~~~~~~-~~dri 129 (131)
..+.+.++..++.|..+|.+|.+.+-+. .||.+
T Consensus 96 ~~~~~~~~~ak~~g~~vi~IT~~~~sl~~~ad~~ 129 (180)
T 1jeo_A 96 ESVLTVAKKAKNINNNIIAIVCECGNVVEFADLT 129 (180)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSCCGGGGGCSEE
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCChHHHhCCEE
Confidence 3456667777777887888887543233 37754
No 445
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=23.73 E-value=87 Score=22.84 Aligned_cols=26 Identities=8% Similarity=0.243 Sum_probs=17.3
Q ss_pred HHHHHHHHHHH-hh---hCCcEEEEEEcCh
Q psy4761 95 ISDTIWQHLRT-LS---ATGVTCIITTHYI 120 (131)
Q Consensus 95 ~~~~i~~~l~~-~~---~~g~tvi~vtH~~ 120 (131)
..+++...+.+ +. ..+.+|++|||-.
T Consensus 174 ~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~ 203 (267)
T 3d8h_A 174 TVERVKPYFEDVIAPSIMSGKSVLVSAHGN 203 (267)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEEeCHH
Confidence 34456666666 33 2577899999964
No 446
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=23.71 E-value=2.7e+02 Score=21.91 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEc
Q psy4761 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTH 118 (131)
Q Consensus 59 ~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH 118 (131)
+.|+..+.+++.-|...+...++++.|+| +++... +...++++. +.|..+|++-+
T Consensus 266 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~--~~s~~~---i~~~~~~l~~~~~~~livID~ 321 (454)
T 2r6a_A 266 GKLTPEDWGKLTMAMGSLSNAGIYIDDTP--SIRVSD---IRAKCRRLKQESGLGMIVIDY 321 (454)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSCEEEECCT--TCCHHH---HHHHHHHHHTTTCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCC--CCCHHH---HHHHHHHHHHHcCCCEEEEcc
Confidence 35788888888777777777788888865 455433 445566665 34777777754
No 447
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=23.70 E-value=1.2e+02 Score=18.00 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=23.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH 118 (131)
..|+++|+|--..+.|- ..+.+.+++... ....||++|.
T Consensus 44 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~ 83 (124)
T 1mb3_A 44 NKPDLILMDIQLPEISG---LEVTKWLKEDDDLAHIPVVAVTA 83 (124)
T ss_dssp HCCSEEEEESBCSSSBH---HHHHHHHHHSTTTTTSCEEEEC-
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHcCccccCCcEEEEEC
Confidence 57999999988877764 234555554321 2444555543
No 448
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=23.69 E-value=1.3e+02 Score=18.15 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=24.2
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcC
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHY 119 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~ 119 (131)
-..|+++++|--..+.|-. .+.+.+++.. ..+..||++|..
T Consensus 49 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 49 QNPHHLVISDFNMPKMDGL---GLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp TSCCSEEEECSSSCSSCHH---HHHHHHTTCTTSTTCEEEECCSC
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHhcCccccCCCEEEEeCC
Confidence 3579999999887777642 3444444321 124556666543
No 449
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=23.65 E-value=1.4e+02 Score=18.48 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=24.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEcC
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTHY 119 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH~ 119 (131)
..|+++|+|--..+.|- ..+.+.+++.. .....||++|..
T Consensus 46 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 46 TPPDLVLLDIMMEPMDG---WETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp SCCSEEEEESCCSSSCH---HHHHHHHHHSTTTTTSCEEEEESS
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHcCcccCCCCEEEEECC
Confidence 57999999988877774 23445555432 124556666543
No 450
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=23.58 E-value=67 Score=19.97 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=21.8
Q ss_pred hCCCEEEEeCCCCC--CCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTAG--LDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~g--LD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+|+++|+|--..+ .|- ..+.+.+++.. .+..||++|.
T Consensus 49 ~~~dlvi~D~~l~~~~~~g---~~~~~~l~~~~-~~~~ii~~s~ 88 (136)
T 3kto_A 49 DDAIGMIIEAHLEDKKDSG---IELLETLVKRG-FHLPTIVMAS 88 (136)
T ss_dssp TTEEEEEEETTGGGBTTHH---HHHHHHHHHTT-CCCCEEEEES
T ss_pred cCCCEEEEeCcCCCCCccH---HHHHHHHHhCC-CCCCEEEEEc
Confidence 56999999976655 442 33444554432 2444555554
No 451
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=23.51 E-value=80 Score=21.05 Aligned_cols=54 Identities=7% Similarity=0.011 Sum_probs=28.8
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
+...+.|+.- +...--..|+++|+|=-..+.|- -.+.+.+++.. .+..||++|.
T Consensus 34 v~~~~~~~~a---l~~~~~~~~dlvl~D~~lp~~~g---~~~~~~l~~~~-~~~~ii~lt~ 87 (184)
T 3rqi_A 34 VRQAHNKDEA---LKLAGAEKFEFITVXLHLGNDSG---LSLIAPLCDLQ-PDARILVLTG 87 (184)
T ss_dssp EEEECSHHHH---HHHHTTSCCSEEEECSEETTEES---HHHHHHHHHHC-TTCEEEEEES
T ss_pred EEEeCCHHHH---HHHHhhCCCCEEEEeccCCCccH---HHHHHHHHhcC-CCCCEEEEeC
Confidence 4445555432 22223467999999976666553 23444455432 2445555554
No 452
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=23.45 E-value=46 Score=24.85 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=33.1
Q ss_pred cCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 58 CGQVSGGQQRRISVAVTMMHS--PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~~--p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+...+.+..++.+.+.++.. ++++=+. -+ .+... +.+++...++.|..||++.||.
T Consensus 91 GG~~~~~~~~~~~ll~~~~~~~~~d~iDvE-l~--~~~~~---~~~l~~~a~~~~~kiI~S~Hdf 149 (258)
T 4h3d_A 91 GGEKLISRDYYTTLNKEISNTGLVDLIDVE-LF--MGDEV---IDEVVNFAHKKEVKVIISNHDF 149 (258)
T ss_dssp TCSCCCCHHHHHHHHHHHHHTTCCSEEEEE-GG--GCHHH---HHHHHHHHHHTTCEEEEEEEES
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCchhhHHh-hh--ccHHH---HHHHHHHHHhCCCEEEEEEecC
Confidence 456666677788887777654 5554432 22 12222 2223333345688899999985
No 453
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=23.41 E-value=32 Score=28.74 Aligned_cols=41 Identities=15% Similarity=0.370 Sum_probs=31.6
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
+.||+|+++|-+.+..+ ++..+++++.+.|..++++.-+.+
T Consensus 213 len~kIll~d~kIs~~~-----~l~~~le~I~~~g~~lvIi~~~I~ 253 (546)
T 3rtk_A 213 LEDPYILLVSSKVSTVK-----DLLPLLEKVIGAGKPLLIIAEDVE 253 (546)
T ss_dssp EESCEEEEBSSEECCST-----TTHHHHHHHHTTTCCEEEEESEEC
T ss_pred ecccEEEEECCccCCHH-----HHHHHHHHHHhcCCCEEEEcCCCC
Confidence 57999999999877654 356677777777888888887654
No 454
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=23.13 E-value=1.9e+02 Score=20.85 Aligned_cols=66 Identities=12% Similarity=0.060 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhh-CCcEEEEEEcCh------hHHhcCCccc
Q psy4761 65 QQRRISVAVTMMHSPL--LLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHYI------EEARHAHKVP 130 (131)
Q Consensus 65 ~~qrl~iaral~~~p~--llilDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~vtH~~------~~~~~~dri~ 130 (131)
-+......+.+..+|+ .++|+=-+.|-|......+.+.++++++ .++-||..-|.. ..+..||+|+
T Consensus 31 ~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~ 105 (240)
T 3rst_A 31 HRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIF 105 (240)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeE
Confidence 3455555666677776 3666533568899999999999999876 466665544433 4445577764
No 455
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.11 E-value=95 Score=25.07 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=24.4
Q ss_pred hCCCEEEEeCCC--CCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 77 HSPLLLILDEPT--AGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 77 ~~p~llilDEPt--~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
.++.+|++||.- ++-+......+.+.+. +.+..+|+++.+..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~---~~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCR---KTSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHH---HCSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHH---hcCCCEEEEEcCCC
Confidence 568899999972 2223222233443333 34567888887653
No 456
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=22.94 E-value=0.66 Score=37.12 Aligned_cols=35 Identities=14% Similarity=0.005 Sum_probs=28.6
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhhCCCEEE-EeCCCC
Q psy4761 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLI-LDEPTA 89 (131)
Q Consensus 55 ~~~~~~LS~G~~qrl~iaral~~~p~lli-lDEPt~ 89 (131)
+.....+++|+++|+..+.+++..|++++ ||+|+.
T Consensus 277 d~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 277 TMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp EECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred ChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 44566789999999998877888888887 888876
No 457
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=22.93 E-value=1.4e+02 Score=18.43 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=25.0
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-hCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~vtH 118 (131)
-..|+++|+|--..+.|- -.+.+.+++.. ..+..||++|.
T Consensus 46 ~~~~dlvl~D~~lp~~~g---~~~~~~lr~~~~~~~~pii~~t~ 86 (136)
T 3t6k_A 46 KNLPDALICDVLLPGIDG---YTLCKRVRQHPLTKTLPILMLTA 86 (136)
T ss_dssp HSCCSEEEEESCCSSSCH---HHHHHHHHHSGGGTTCCEEEEEC
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHcCCCcCCccEEEEec
Confidence 468999999988888774 33555555532 23444555554
No 458
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=22.83 E-value=1.8e+02 Score=19.71 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=24.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh---hCCcEEEEEEc
Q psy4761 78 SPLLLILDEPTAGLDPLISDTIWQHLRTLS---ATGVTCIITTH 118 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~~~~i~~~l~~~~---~~g~tvi~vtH 118 (131)
.|+++|+|=-..+.|- ..+.+.|++.. .....||++|-
T Consensus 119 ~~dlillD~~lp~~~G---~el~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDG---YEATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp SCSEEEEESCCSSSCH---HHHHHHHHHHHHTTTCCCCEEEEES
T ss_pred CCCEEEEcCCCCCCCH---HHHHHHHHhhhhhcCCCCcEEEEEC
Confidence 7999999987777774 34555555541 13445555554
No 459
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=22.66 E-value=32 Score=27.50 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=26.5
Q ss_pred CCEEEEeCCCCCCCH-----H-----------H----HHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 79 PLLLILDEPTAGLDP-----L-----------I----SDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 79 p~llilDEPt~gLD~-----~-----------~----~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.+++++|=|++|... . . +..+++.+.++.+.|..++++|..+
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 489999999998742 1 1 1234444444435577888888755
No 460
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=22.65 E-value=90 Score=26.03 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=30.7
Q ss_pred CCCEEEEeCCCCC----------C-CHH--------HHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 78 SPLLLILDEPTAG----------L-DPL--------ISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 78 ~p~llilDEPt~g----------L-D~~--------~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+|+|+++|-|..- + ++. ..+.+.+.+.++.+.|.-++++.-+.+.
T Consensus 244 n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~ 307 (568)
T 3p9d_H 244 KHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGE 307 (568)
T ss_dssp SCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCCCH
T ss_pred cceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCcCh
Confidence 9999999998421 1 122 2234556777777789999999877654
No 461
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=22.60 E-value=87 Score=22.99 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=16.7
Q ss_pred HHHHHHHHHH-hh---hCCcEEEEEEcCh
Q psy4761 96 SDTIWQHLRT-LS---ATGVTCIITTHYI 120 (131)
Q Consensus 96 ~~~i~~~l~~-~~---~~g~tvi~vtH~~ 120 (131)
..++...+.+ +. ..|.+|++|||-.
T Consensus 157 ~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~ 185 (265)
T 1rii_A 157 VARFLPYFTDVIVGDLRVGKTVLIVAHGN 185 (265)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEeChH
Confidence 4455566655 32 3578999999964
No 462
>3j21_D 50S ribosomal protein L4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.29 E-value=38 Score=25.71 Aligned_cols=46 Identities=9% Similarity=0.252 Sum_probs=28.5
Q ss_pred cCCCCHHHHHHHHHHHHHhhCC------------------CEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q psy4761 58 CGQVSGGQQRRISVAVTMMHSP------------------LLLILDEPTAGLDPLISDTIWQHLRTLS 107 (131)
Q Consensus 58 ~~~LS~G~~qrl~iaral~~~p------------------~llilDEPt~gLD~~~~~~i~~~l~~~~ 107 (131)
-..+..-| +|+++..||.... +|++.|+-. ++.....+.++|+.+.
T Consensus 102 ~~klNkK~-rrlAl~sALsa~~~~~lv~~rgh~~~~~~~~~lvVvd~~~---~~~KTK~~~~~L~~lg 165 (255)
T 3j21_D 102 WEDINKKE-KRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQ---KVQKTRETREIFKKLG 165 (255)
T ss_dssp CCCCCHHH-HHHHHHHHHHHTTCHHHHHHHTCCCSCTTCSSEEECGGGG---TCCCHHHHHHHHHHHT
T ss_pred ceecCHHH-HHHHHHHHHHHHhhcccchhcccccccccceeEEEEeCCc---CCCChHHHHHHHHHcC
Confidence 33455444 5789999997654 488888753 2223445667776653
No 463
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.27 E-value=98 Score=20.83 Aligned_cols=50 Identities=20% Similarity=0.062 Sum_probs=28.5
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcChh--HHhcCCcc
Q psy4761 75 MMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE--EARHAHKV 129 (131)
Q Consensus 75 l~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~~--~~~~~dri 129 (131)
.+.+-+++|+= -.+|=. ..+.+.++..++.|..+|.+|.+.+ ....||.+
T Consensus 84 ~~~~~d~~i~i-S~sG~t----~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~ 135 (187)
T 3sho_A 84 NLRPTDLMIGV-SVWRYL----RDTVAALAGAAERGVPTMALTDSSVSPPARIADHV 135 (187)
T ss_dssp TCCTTEEEEEE-CCSSCC----HHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEE
T ss_pred cCCCCCEEEEE-eCCCCC----HHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEE
Confidence 34444555541 234433 3466667777777888888887542 33447754
No 464
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=22.24 E-value=1.1e+02 Score=24.21 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=27.4
Q ss_pred HHHHhhCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHhh-----hCCcEEEEEEcChhH
Q psy4761 72 AVTMMHSPLLLILDEPTAG-------LDPLISDTIWQHLRTLS-----ATGVTCIITTHYIEE 122 (131)
Q Consensus 72 aral~~~p~llilDEPt~g-------LD~~~~~~i~~~l~~~~-----~~g~tvi~vtH~~~~ 122 (131)
..|-...|.+|++||--+- ......+.+..++..+. ..+..||.+|+..+.
T Consensus 221 ~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ 283 (444)
T 2zan_A 221 QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 283 (444)
T ss_dssp HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGG
T ss_pred HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccc
Confidence 3344578999999997532 11111222223333321 235677888887643
No 465
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=22.23 E-value=2.6e+02 Score=24.42 Aligned_cols=55 Identities=11% Similarity=0.150 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhC--CcEEEEEEc
Q psy4761 63 GGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT--GVTCIITTH 118 (131)
Q Consensus 63 ~G~~qrl~iaral~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~--g~tvi~vtH 118 (131)
|..-=.+++..+|+..|+++++=|---.++. ..+.+.+.+++.++. +.+||+++.
T Consensus 198 GR~aG~LAl~aglA~gAd~ilIPE~p~~~~~-~~~~v~~~i~~~~~~gk~~~IVvVaE 254 (766)
T 3o8o_B 198 GRNCGWLALLAGIATSADYIFIPEKPATSSE-WQDQMCDIVSKHRSRGKRTTIVVVAE 254 (766)
T ss_dssp CTTCCHHHHHHHHHHTCSEEECTTCCCCTTH-HHHHHHHHHHHHHHTTCCCEEEEEET
T ss_pred CcchhHHHHHHHHhcCCCEEEccCCCCChHH-HHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 3333478999999999999999764444442 345677777665433 457887764
No 466
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=22.19 E-value=97 Score=21.72 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhh-CCcEEEEEEcCh
Q psy4761 95 ISDTIWQHLRTLSA-TGVTCIITTHYI 120 (131)
Q Consensus 95 ~~~~i~~~l~~~~~-~g~tvi~vtH~~ 120 (131)
..+++.+.+.++.+ ...+|++|||--
T Consensus 125 ~~~R~~~~l~~l~~~~~~~vlvVsHg~ 151 (213)
T 3hjg_A 125 FSQRVSRAWSQIINDINDNLLIVTHGG 151 (213)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEECHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCHH
Confidence 34456667777653 347899999964
No 467
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=22.10 E-value=57 Score=27.05 Aligned_cols=47 Identities=9% Similarity=0.167 Sum_probs=32.5
Q ss_pred hhCCCEEEEeCCCC-------------CCCH------HHHHHHHHHHHHhhhCCcEEEEEEcChhH
Q psy4761 76 MHSPLLLILDEPTA-------------GLDP------LISDTIWQHLRTLSATGVTCIITTHYIEE 122 (131)
Q Consensus 76 ~~~p~llilDEPt~-------------gLD~------~~~~~i~~~l~~~~~~g~tvi~vtH~~~~ 122 (131)
+.||+|+++|-|.. ..+. ...+.+...+.++.+.|..++++.-+.+.
T Consensus 227 ~~n~kIll~~~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~~ 292 (543)
T 3ruv_A 227 VTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDD 292 (543)
T ss_dssp EEEEEEEEESSCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBCH
T ss_pred ccCcEEEEEcccccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 67899999999742 2221 22334777777777778889998877653
No 468
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=22.00 E-value=34 Score=23.30 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=24.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 77 HSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 77 ~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
.+-+++|+||.-.-+|......+..++..+......++++.-
T Consensus 145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT 186 (206)
T 1vec_A 145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSAT 186 (206)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESC
T ss_pred ccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEee
Confidence 356899999997655544445555555544333344444433
No 469
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote structure initiative; 1.75A {Saccharomyces cerevisiae} PDB: 3lg2_A 3oi7_A* 3ll4_A*
Probab=21.92 E-value=81 Score=22.89 Aligned_cols=24 Identities=4% Similarity=0.040 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhh---------CCcEEEEEEcCh
Q psy4761 97 DTIWQHLRTLSA---------TGVTCIITTHYI 120 (131)
Q Consensus 97 ~~i~~~l~~~~~---------~g~tvi~vtH~~ 120 (131)
.++...+.++.+ .+.+|++|||--
T Consensus 146 ~R~~~~l~~l~~~~~~~~~~~~~~~vliVsHg~ 178 (265)
T 3f3k_A 146 LRLSRAIARIQNLHRKHQSEGRASDIMVFAHGH 178 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEEECHH
T ss_pred HHHHHHHHHHHHHhhhhhccCCCCcEEEEeChH
Confidence 345555555532 357999999954
No 470
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=21.63 E-value=1e+02 Score=19.71 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhC-CcEEEEEEcCh
Q psy4761 96 SDTIWQHLRTLSAT-GVTCIITTHYI 120 (131)
Q Consensus 96 ~~~i~~~l~~~~~~-g~tvi~vtH~~ 120 (131)
.+++.+.++++.++ +.+||++|.++
T Consensus 38 ~ee~~~~~~~l~~~~digIIlIte~i 63 (102)
T 2i4r_A 38 DEEIVKAVEDVLKRDDVGVVIMKQEY 63 (102)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEEEGGG
T ss_pred HHHHHHHHHHHhhCCCeEEEEEeHHH
Confidence 45677777777654 78899998765
No 471
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=21.63 E-value=1.3e+02 Score=17.67 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=22.2
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEc
Q psy4761 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118 (131)
Q Consensus 76 ~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH 118 (131)
-.+|+++++|--..+.|- ..+.+.+++ .....+|++|.
T Consensus 43 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~--~~~~~ii~~s~ 80 (121)
T 1zh2_A 43 TRKPDLIILDLGLPDGDG---IEFIRDLRQ--WSAVPVIVLSA 80 (121)
T ss_dssp HHCCSEEEEESEETTEEH---HHHHHHHHT--TCCCCEEEEES
T ss_pred cCCCCEEEEeCCCCCCcH---HHHHHHHHh--CCCCcEEEEEC
Confidence 358999999987766653 234444442 23444555543
No 472
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=21.36 E-value=79 Score=24.23 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=15.5
Q ss_pred HHHHHHHhhhCCcEEEEEEcChh
Q psy4761 99 IWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 99 i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
+.+.+.++...+.+|++|+|...
T Consensus 276 ~~~~~~~~~~~~~~vlvV~H~~~ 298 (364)
T 3fjy_A 276 FREQITQTLNSRETTAICMHRPV 298 (364)
T ss_dssp HHHHHHHHHHHTCEEEEEECHHH
T ss_pred HHHHHHHHhcCCCeEEEEeCcHH
Confidence 34445554445789999999753
No 473
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=21.05 E-value=60 Score=24.57 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=25.2
Q ss_pred hCCCEEEEeCCCCCC-----CHHHHHHHHHHHHHhh--h--CCcEEEEEEcChh
Q psy4761 77 HSPLLLILDEPTAGL-----DPLISDTIWQHLRTLS--A--TGVTCIITTHYIE 121 (131)
Q Consensus 77 ~~p~llilDEPt~gL-----D~~~~~~i~~~l~~~~--~--~g~tvi~vtH~~~ 121 (131)
.+|-++++||--.-. +......+...+.... . .+..+|++|.+.+
T Consensus 137 ~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~ 190 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVR 190 (412)
T ss_dssp TCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETH
T ss_pred CCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEecccc
Confidence 457899999963311 2333344444554432 2 3456777876554
No 474
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18
Probab=21.04 E-value=2e+02 Score=20.89 Aligned_cols=50 Identities=6% Similarity=0.119 Sum_probs=35.1
Q ss_pred HHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhh--CCcEEEEEEcCh
Q psy4761 71 VAVTMMHS-PLLLILDEPTAGLDPLISDTIWQHLRTLSA--TGVTCIITTHYI 120 (131)
Q Consensus 71 iaral~~~-p~llilDEPt~gLD~~~~~~i~~~l~~~~~--~g~tvi~vtH~~ 120 (131)
++..|..+ -+++.+|-|..|-.....+.+.+.+.++.+ ...-|+++.|.+
T Consensus 31 ~~~~L~~~G~~v~~~d~~g~g~s~~~~~~~~~~i~~~~~~~~~~~v~lvGhS~ 83 (285)
T 1ex9_A 31 IPSALRRDGAQVYVTEVSQLDTSEVRGEQLLQQVEEIVALSGQPKVNLIGHSH 83 (285)
T ss_dssp HHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHHHHHHHCCSCEEEEEETT
T ss_pred HHHHHHhCCCEEEEEeCCCCCCchhhHHHHHHHHHHHHHHhCCCCEEEEEECH
Confidence 44555544 789999999888777666667776666542 235688899986
No 475
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=20.99 E-value=99 Score=20.79 Aligned_cols=50 Identities=12% Similarity=0.095 Sum_probs=28.4
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh-h-HHhcCCcc
Q psy4761 75 MMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI-E-EARHAHKV 129 (131)
Q Consensus 75 l~~~p~llilDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~-~-~~~~~dri 129 (131)
.+.+-+++|+= -.+|=. ..+.+.++..++.|.++|.+|.+. . ..+.||.+
T Consensus 107 ~~~~~Dvvi~i-S~sG~t----~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~ 158 (188)
T 1tk9_A 107 LGNEKDVLIGI-STSGKS----PNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHN 158 (188)
T ss_dssp HCCTTCEEEEE-CSSSCC----HHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEE
T ss_pred hCCCCCEEEEE-eCCCCC----HHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEE
Confidence 35555666551 233433 345566666677788777777654 2 33447754
No 476
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=20.96 E-value=59 Score=24.74 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=10.7
Q ss_pred CCEEEEeCCCCCCCH
Q psy4761 79 PLLLILDEPTAGLDP 93 (131)
Q Consensus 79 p~llilDEPt~gLD~ 93 (131)
.+.+++|=|++|...
T Consensus 175 fD~Vl~D~PcSg~G~ 189 (309)
T 2b9e_A 175 VHYILLDPSCSGSGM 189 (309)
T ss_dssp EEEEEECCCCCC---
T ss_pred CCEEEEcCCcCCCCC
Confidence 488999999988644
No 477
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=20.91 E-value=1.2e+02 Score=20.33 Aligned_cols=32 Identities=25% Similarity=0.061 Sum_probs=20.3
Q ss_pred HHHHHHHHhhhCCcEEEEEEcCh-h-HHhcCCcc
Q psy4761 98 TIWQHLRTLSATGVTCIITTHYI-E-EARHAHKV 129 (131)
Q Consensus 98 ~i~~~l~~~~~~g~tvi~vtH~~-~-~~~~~dri 129 (131)
.+.+.++..++.|..+|.+|.+. . ..+.||.+
T Consensus 111 ~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~ 144 (183)
T 2xhz_A 111 EITALIPVLKRLHVPLICITGRPESSMARAADVH 144 (183)
T ss_dssp HHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEE
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEE
Confidence 45566666667788777777754 2 33447754
No 478
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET: CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Probab=20.91 E-value=1.1e+02 Score=22.20 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=16.4
Q ss_pred HHHHHHHHHHh-h---hCCcEEEEEEcCh
Q psy4761 96 SDTIWQHLRTL-S---ATGVTCIITTHYI 120 (131)
Q Consensus 96 ~~~i~~~l~~~-~---~~g~tvi~vtH~~ 120 (131)
.+++...+.++ . ..+.+|++|||-.
T Consensus 160 ~~Rv~~~l~~li~~~~~~~~~vlvVsHg~ 188 (262)
T 1yfk_A 160 IARALPFWNEEIVPQIKEGKRVLIAAHGN 188 (262)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEEcChH
Confidence 34455666553 2 3578999999964
No 479
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Probab=20.56 E-value=2.4e+02 Score=20.60 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=33.3
Q ss_pred CCCEEEEeCCC--------CCCCHHHHHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 78 SPLLLILDEPT--------AGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 78 ~p~llilDEPt--------~gLD~~~~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
.-.++.+|-|= .+-+.....++.+.++++.++|.-+++|-||-
T Consensus 164 ~~~fvY~DPPY~~~~~~Y~~~f~~~d~~~L~~~l~~l~~~g~~~~lS~~d~ 214 (259)
T 1yf3_A 164 DGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDRGIKFGLSNVLE 214 (259)
T ss_dssp TTEEEEECCCCTTSCCGGGGGCCHHHHHHHHHHHHHHHTTTCEEEEEEESE
T ss_pred CCeEEEECCCCCCccchhccCCCHHHHHHHHHHHHHHhhCCCEEEEEeecC
Confidence 34689999983 23677788899999999877777788887753
No 480
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=20.55 E-value=1.3e+02 Score=24.86 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHh-hhCCcEEEEEEcCh
Q psy4761 60 QVSGGQQRRISVAVTMMHS-PLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTHYI 120 (131)
Q Consensus 60 ~LS~G~~qrl~iaral~~~-p~llilDEPt~gLD~~~~~~i~~~l~~~-~~~g~tvi~vtH~~ 120 (131)
++=|..-=.+++..+|+.. |+++++=|- ..|.. .+.+.+++- ..++.+||+++--.
T Consensus 270 EVMGR~aG~LAl~agLA~g~ad~ilIPE~--p~~l~---~i~~~i~~r~~~k~~~IIvVaEGa 327 (487)
T 2hig_A 270 KLMGRDSGFIAAQAAVASAQANICLVPEN--PISEQ---EVMSLLERRFCHSRSCVIIVAEGF 327 (487)
T ss_dssp EECCSSCCHHHHHHHHHHTCCSEEECTTS--CCCHH---HHHHHHHHHTTSCSEEEEEEETTT
T ss_pred EeCCCCHHHHHHHHHHhhCCCCEEEeCCC--CCCHH---HHHHHHHHHHhcCCcEEEEEeCCC
Confidence 3334444479999999998 999999553 33443 566666553 34577888887654
No 481
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.40A {Thermus thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A 2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A 2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A 2enw_A ...
Probab=20.41 E-value=78 Score=21.57 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhCCcEEEEEEcCh
Q psy4761 96 SDTIWQHLRTLSATGVTCIITTHYI 120 (131)
Q Consensus 96 ~~~i~~~l~~~~~~g~tvi~vtH~~ 120 (131)
..++...+.++ + .+|++|||..
T Consensus 114 ~~R~~~~l~~l-~--~~vlvVsHg~ 135 (177)
T 1v37_A 114 QERVFRFLEGL-K--APAVLFTHGG 135 (177)
T ss_dssp HHHHHHHHHHC-C--SCEEEEECHH
T ss_pred HHHHHHHHHHc-C--CCEEEEcCHH
Confidence 34466677776 4 6899999975
No 482
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=20.14 E-value=67 Score=26.74 Aligned_cols=46 Identities=22% Similarity=0.371 Sum_probs=31.9
Q ss_pred hhCCCEEEEeCCCCC----------C-CHHH--------HHHHHHHHHHhhhCCcEEEEEEcChh
Q psy4761 76 MHSPLLLILDEPTAG----------L-DPLI--------SDTIWQHLRTLSATGVTCIITTHYIE 121 (131)
Q Consensus 76 ~~~p~llilDEPt~g----------L-D~~~--------~~~i~~~l~~~~~~g~tvi~vtH~~~ 121 (131)
+.||+|+++|-|... + ++.. .+.+...+.++.+.|..++++.-+.+
T Consensus 241 ien~kIll~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~ 305 (553)
T 3ko1_A 241 LENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGID 305 (553)
T ss_dssp CBSCEEEEECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBC
T ss_pred cccceEEEecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccChH
Confidence 679999999998532 1 2222 23466777777777998999886654
No 483
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=20.08 E-value=72 Score=24.71 Aligned_cols=42 Identities=12% Similarity=-0.065 Sum_probs=24.8
Q ss_pred CCCEEEEeCCCCCCCHHH-------HHHHHHHHHHhhhCCcEEEEEEcC
Q psy4761 78 SPLLLILDEPTAGLDPLI-------SDTIWQHLRTLSATGVTCIITTHY 119 (131)
Q Consensus 78 ~p~llilDEPt~gLD~~~-------~~~i~~~l~~~~~~g~tvi~vtH~ 119 (131)
..+++++|-|..+..... ...+.....++.+.|..++++|..
T Consensus 289 ~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 289 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 579999999987765422 222222233333456667777664
Done!