RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4761
(131 letters)
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 97.4 bits (243), Expect = 1e-25
Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATG-VTC 113
N +SGG ++R+S+A+ ++H P LLILDEPT+GLDP IW+ LR L+ G VT
Sbjct: 131 NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTI 190
Query: 114 IITTHYIEEA 123
+++TH +EEA
Sbjct: 191 LLSTHILEEA 200
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 92.5 bits (231), Expect = 9e-25
Identities = 29/62 (46%), Positives = 43/62 (69%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGG ++R+++A ++H P LLILDEPT+GLDP W+ LR L G T ++++H +E
Sbjct: 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156
Query: 122 EA 123
EA
Sbjct: 157 EA 158
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 83.1 bits (206), Expect = 3e-21
Identities = 31/71 (43%), Positives = 46/71 (64%)
Query: 56 SLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCII 115
Q+SGGQ++R+++A ++ +P LL+LDEPT+GLDP + + + LR L+ G T II
Sbjct: 76 GYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVII 135
Query: 116 TTHYIEEARHA 126
TH E A A
Sbjct: 136 VTHDPELAELA 146
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 84.0 bits (208), Expect = 1e-20
Identities = 33/69 (47%), Positives = 46/69 (66%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114
+ G SGG +RR+ +A +++H P +L LDEPT GLDP IW ++R L GVT +
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178
Query: 115 ITTHYIEEA 123
+TTHY+EEA
Sbjct: 179 LTTHYMEEA 187
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 82.0 bits (203), Expect = 3e-20
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTC 113
+ L SGG +RR+ +A +++H P +L LDEPT GLDP +W+++ L G+T
Sbjct: 126 DRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTI 185
Query: 114 IITTHYIEEA 123
++TTHY+EEA
Sbjct: 186 LLTTHYMEEA 195
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 79.5 bits (196), Expect = 1e-18
Identities = 33/64 (51%), Positives = 47/64 (73%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
+SGG +RR+++A +++ P LLILDEPT GLDP IW+ LR+L A G T ++TTH+
Sbjct: 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 231
Query: 120 IEEA 123
+EEA
Sbjct: 232 MEEA 235
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 78.7 bits (194), Expect = 1e-18
Identities = 31/65 (47%), Positives = 49/65 (75%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
G++SGG +RR+++A +++ P +L+LDEPT GLDP +W+ LR+L A G T ++TTH
Sbjct: 137 GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
Query: 119 YIEEA 123
++EEA
Sbjct: 197 FMEEA 201
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 78.4 bits (193), Expect = 2e-18
Identities = 33/64 (51%), Positives = 47/64 (73%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
+SGG +RR+++A +++ P LLILDEPT GLDP IW+ LR+L A G T ++TTH+
Sbjct: 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 194
Query: 120 IEEA 123
+EEA
Sbjct: 195 MEEA 198
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 76.0 bits (188), Expect = 5e-18
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 43 WYISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH 102
+ +L N +SGG +R++S+A+ ++ P +L+LDEPT+GLDP IW
Sbjct: 116 LLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDL 175
Query: 103 LRTLSATGVTCIITTHYIEEARH-AHKVPI 131
+ + G + I+TTH ++EA ++ I
Sbjct: 176 ILEVR-KGRSIILTTHSMDEAEALCDRIAI 204
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 75.2 bits (186), Expect = 7e-18
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGGQ++R+++A + P +L+LDEPTAGLDP + + L+ L A G T II TH ++
Sbjct: 136 SGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD 195
Query: 122 E-ARHAHKV 129
A +V
Sbjct: 196 LLLELADRV 204
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 72.1 bits (178), Expect = 2e-16
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114
L G +SGG+Q+ +++A +M P LL+LDEP+ GL P I + I++ +R L GVT +
Sbjct: 127 KQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTIL 186
Query: 115 ITTHYIEEARH 125
+ A
Sbjct: 187 LVEQNARFALE 197
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 72.4 bits (178), Expect = 2e-16
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
+SGGQQ+R+++A +M P +L+ DEPTA LDP I+ I +R L+ TG+T +I TH
Sbjct: 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200
Query: 120 IEEAR 124
+E AR
Sbjct: 201 VEVAR 205
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 70.7 bits (174), Expect = 3e-16
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120
SGGQQ+R+++A + P +L+LDEPT+ LDP+ + L++L A G+T ++ TH +
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161
Query: 121 EEARH 125
+EA
Sbjct: 162 DEAAR 166
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 71.2 bits (175), Expect = 4e-16
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
+++GG +RR+ +A ++H P LL+LDEPT GLDP I H+R L+ G++ + TH
Sbjct: 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATH 191
Query: 119 YIEEARHAHKV 129
++E ++
Sbjct: 192 LVDEIEADDRL 202
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 71.0 bits (175), Expect = 4e-16
Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118
++SGGQQ+R+++A ++++P +++ DEPT LD + + + LR L+ G T I+ TH
Sbjct: 142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201
Query: 119 YIEEARHAHKV 129
E A++A +V
Sbjct: 202 DPELAKYADRV 212
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 68.9 bits (170), Expect = 8e-16
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGGQ++RI++A ++ P +LILDE T+ LDP I + LR L+ G T I+ H +
Sbjct: 98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS 156
Query: 122 EARHAHKV 129
R A ++
Sbjct: 157 TIRDADRI 164
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 70.2 bits (172), Expect = 1e-15
Identities = 30/65 (46%), Positives = 45/65 (69%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
+SGGQQ+R+++A +M P +L+ DEPTA LDP I+ I ++ L+ TG+T +I TH
Sbjct: 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
Query: 120 IEEAR 124
+E AR
Sbjct: 201 VEVAR 205
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 68.8 bits (169), Expect = 2e-15
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++S G Q+++ ++H P LLILDEP +GLDP+ + + +R L+ G T I++TH
Sbjct: 128 ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187
Query: 120 IEEA 123
+E
Sbjct: 188 MELV 191
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 68.3 bits (168), Expect = 4e-15
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTC 113
N ++SGGQQ+R+++A + + P +++ DEPT LD + + LR L+ G T
Sbjct: 135 NHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTI 194
Query: 114 IITTHYIEEARHAHKV 129
++ TH E A +A ++
Sbjct: 195 VVVTHDPELAEYADRI 210
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 67.6 bits (166), Expect = 6e-15
Identities = 25/58 (43%), Positives = 40/58 (68%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
+SGG+++R+S+A+ ++ +P LL LDEPT+GLD + + LR L+ TG T I + H
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 67.1 bits (165), Expect = 1e-14
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITT 117
++SGG ++R+++A + P LL+ DEPTAGLDP+ S I +R+L G+T I+ T
Sbjct: 135 AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVT 194
Query: 118 HYIEEAR 124
H ++ A
Sbjct: 195 HDLDTAF 201
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 66.5 bits (163), Expect = 1e-14
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 48 LNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDP----LISDTIWQ 101
L L + P SL SGGQ++R+++A ++ LLI DEPT+GLD + + I
Sbjct: 116 LYALKERHPLSL----SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI-- 169
Query: 102 HLRTLSATGVTCIITTHYIE 121
R L+A G I+ TH E
Sbjct: 170 --RELAAQGKAVIVITHDYE 187
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 66.8 bits (164), Expect = 2e-14
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIIT 116
Q+SGGQQ+R+++A +M P L++ DEP A LDP S + L+ ++ G+T I++
Sbjct: 142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVS 201
Query: 117 THYIEEAR 124
H ++ AR
Sbjct: 202 LHQVDLAR 209
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 66.1 bits (162), Expect = 3e-14
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114
+L Q+SGG+Q+R+++A +++ P +L+ DEPT LDP +S I + ++ G T +
Sbjct: 132 RALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVL 191
Query: 115 ITTH 118
+ TH
Sbjct: 192 MATH 195
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 66.8 bits (164), Expect = 4e-14
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 50 GLPDPNSLCG---QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106
GLPDP Q+SGG ++R+ +A+ + P LLI DEPT LD I L+ L
Sbjct: 141 GLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDL 200
Query: 107 SA-TGVTCIITTHYIE 121
G+ + TH +
Sbjct: 201 QRELGMAVLFITHDLG 216
Score = 47.6 bits (114), Expect = 3e-07
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 50 GLPDP--NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS 107
GLP + ++SGGQ++R+++A + P LLILDEP + LD + + L+ L
Sbjct: 417 GLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQ 476
Query: 108 A-TGVTCIITTHYIEEARH-AHKV 129
G+T + +H + R+ A +V
Sbjct: 477 EELGLTYLFISHDLAVVRYIADRV 500
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 64.0 bits (157), Expect = 5e-14
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
Q+S G+++ + +A + + LLILDEPTA L P + +++ +R L A GV I +H
Sbjct: 82 QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141
Query: 120 IEEAR 124
++E
Sbjct: 142 LDEVF 146
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 65.0 bits (159), Expect = 9e-14
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIIT 116
Q+SGGQQ+R+++A + P L++ DEP A LDP S + +L+ ++ G+T II
Sbjct: 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIIN 202
Query: 117 THYIEEAR 124
H ++ A+
Sbjct: 203 LHQVDLAK 210
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 63.8 bits (156), Expect = 2e-13
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 50 GLPDP-NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA 108
GL ++ Q+SGG+Q+R+++A +++SP LL+ DEPT LDP +S+ I L+ L+
Sbjct: 126 GLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK 185
Query: 109 TGVTCIITTHYIEEARHAHK 128
G T I+ TH +
Sbjct: 186 RGTTVIVATHDLSLVDRVAH 205
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 64.2 bits (157), Expect = 2e-13
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
++SGG ++R+++A + P LL LDEPT+GLDP+ + I + +R L A G+T I+ TH
Sbjct: 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH 204
Query: 119 YIEEAR 124
++
Sbjct: 205 DLDSLL 210
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 63.7 bits (156), Expect = 3e-13
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 47 LLNGLPDP----NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH 102
LL G+ P N ++SGGQ++R+++A + +P LLI DEPT+ LD + I
Sbjct: 128 LLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDL 187
Query: 103 LRTL-SATGVTCIITTHYIEEARH-AHKV 129
L+ L G+T + TH + A +V
Sbjct: 188 LKKLQEELGLTLLFITHDLGVVAKIADRV 216
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 63.1 bits (154), Expect = 4e-13
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114
+L +SGG++RR+S+AV ++ P +LILDEPT+GLD + + L L+ I
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 115 ITTH 118
+T H
Sbjct: 198 LTIH 201
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 62.1 bits (151), Expect = 6e-13
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIIT 116
+SGG+++R+++A + P +L+LDEPTAGLDP + + LR L A G+T +I+
Sbjct: 124 PTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVIS 183
Query: 117 THYIEEA 123
TH ++ A
Sbjct: 184 THDVDLA 190
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 62.1 bits (152), Expect = 8e-13
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHL-RTLSATGVTCIITTH 118
Q+SGG ++R+++A + P +L+LDEP + LD L + + + L TG T ++ TH
Sbjct: 131 QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH 190
Query: 119 YIEEA 123
I+EA
Sbjct: 191 DIDEA 195
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 62.8 bits (153), Expect = 8e-13
Identities = 25/57 (43%), Positives = 41/57 (71%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
SGGQ++R+++A + P +++LDEPT+GLDP+ + I + L L+ G+T II+TH
Sbjct: 139 SGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTH 195
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 62.5 bits (153), Expect = 8e-13
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
Q+SGGQQ+R+++A + P +++ DEPT+ LDP + + ++ L+ G+T II TH
Sbjct: 135 AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTH 194
Query: 119 YIEEARHAHKV 129
E A +V
Sbjct: 195 ---EMGFAREV 202
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 63.1 bits (154), Expect = 8e-13
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 48 LNGLPDP-NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106
L GLP GQ+SGGQQ+R+++A + SP LL+LDEP + LD + + + +R L
Sbjct: 121 LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180
Query: 107 SAT-GVTCIITTHYIEEA 123
GVT I+ TH EEA
Sbjct: 181 QRRLGVTTIMVTHDQEEA 198
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 61.8 bits (151), Expect = 8e-13
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
G++SGGQQ+R+ +A ++ P LL+LDEP AG+DP + I++ LR L G+T ++ TH
Sbjct: 131 GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTH 190
Query: 119 YIEEA-RHAHKV 129
+ + +V
Sbjct: 191 DLGLVLEYFDRV 202
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 61.4 bits (150), Expect = 1e-12
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
++SGGQQ+R+++A + P LL+LDEP + LD + + + + L+ L G+T I TH
Sbjct: 130 ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTH 189
Query: 119 YIEEA 123
EEA
Sbjct: 190 DQEEA 194
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 61.5 bits (150), Expect = 2e-12
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120
SGGQ++R+++A + P +L+LDEPTAGLDP + + L+ L G T II TH +
Sbjct: 140 SGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL 199
Query: 121 EEA 123
E
Sbjct: 200 ELV 202
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 61.0 bits (149), Expect = 2e-12
Identities = 28/82 (34%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 50 GLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA 108
GL D ++ Q+SGGQQ+R+++A + +P +++ DEPT+ LDP + + ++ L+
Sbjct: 124 GLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183
Query: 109 TGVTCIITTHYIEEARH-AHKV 129
G+T ++ TH + AR A +V
Sbjct: 184 EGMTMVVVTHEMGFAREVADRV 205
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 61.6 bits (150), Expect = 2e-12
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 44 YISLLNGLPD------PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISD 97
YI L+ GL + P L SGGQ+RR+++A + P L+ DEPTAGLDP
Sbjct: 148 YIELV-GLDESYLQRSPFEL----SGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVK 202
Query: 98 TIWQHLRTLSATGVTCIITTH 118
I + L+ G T I+ TH
Sbjct: 203 EILEIFDNLNKQGKTIILVTH 223
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 62.1 bits (152), Expect = 2e-12
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
DP++L G +S Q++ + +A + +LILDEPTA L ++ ++ +R L A GV
Sbjct: 138 DPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVA 197
Query: 113 CIITTHYIEEAR 124
I +H ++E
Sbjct: 198 IIYISHRLDEVF 209
Score = 54.8 bits (133), Expect = 7e-10
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 52 PDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGV 111
P P G +SGG Q+++ +A + P +LILDEPT G+D I++ +R L+A G
Sbjct: 393 PSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGK 452
Query: 112 TCIITTHYIEEA 123
++ + + E
Sbjct: 453 AILMISSELPEL 464
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 60.5 bits (147), Expect = 3e-12
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114
+L ++SGG+Q+R+++A +++SP +LI DEPT LDP + I L+ ++ G T +
Sbjct: 131 RALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVV 190
Query: 115 ITTHYIE-EARHAHKV 129
+ TH E H+V
Sbjct: 191 VATHAKELVDTTRHRV 206
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 60.3 bits (147), Expect = 3e-12
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++SGG+Q+R+++A ++ P L++ DEPT LDP D + L L+ G T II TH
Sbjct: 134 ELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHD 193
Query: 120 IEEARHAHKV 129
E A+ A +V
Sbjct: 194 PEVAKQADRV 203
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 60.5 bits (147), Expect = 4e-12
Identities = 22/65 (33%), Positives = 41/65 (63%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
G S G ++++++A ++H P +L+LDEPT GLD + + + + +R L A G + +TH
Sbjct: 135 GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTH 194
Query: 119 YIEEA 123
++E
Sbjct: 195 IMQEV 199
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 60.1 bits (147), Expect = 5e-12
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114
+ G++S GQQRR+ +A + P LL+LDEP AGL+P ++ + + +R L G+T +
Sbjct: 138 DRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVL 197
Query: 115 ITTH 118
+ H
Sbjct: 198 LVEH 201
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 60.3 bits (147), Expect = 5e-12
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIIT 116
+SGGQQ+R+++A ++ P +++ DEP A LDP + + L+ ++ G+T I+
Sbjct: 145 ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVN 204
Query: 117 THYIEEAR 124
H ++ A+
Sbjct: 205 LHQVDLAK 212
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 60.3 bits (147), Expect = 5e-12
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHL-RTLSATGVTC 113
+ Q+SGG ++R+++A + P LL+LDEP LD L + + L R T T
Sbjct: 125 DKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTV 184
Query: 114 IITTHYIEEA 123
++ TH ++EA
Sbjct: 185 LLVTHDVDEA 194
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 61.1 bits (149), Expect = 6e-12
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGGQ++R+++A ++ P +L+LDE T+ LDP I Q+L + G T II H +
Sbjct: 611 SGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI-LQGRTVIIIAHRLS 669
Query: 122 EARHAHKV 129
R A ++
Sbjct: 670 TIRSADRI 677
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 59.5 bits (145), Expect = 6e-12
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
G +SGG +RR+ +A ++ P +LI+DEPTAGLDP L L I++TH
Sbjct: 129 GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGED-RIVILSTH 187
Query: 119 YIEE-ARHAHKV 129
+E+ ++V
Sbjct: 188 IVEDVESLCNQV 199
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 60.0 bits (145), Expect = 7e-12
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+S+A + P +L+ DEPT+ LDP + + + ++ L+ G T ++ TH +
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212
Query: 121 EEARH 125
ARH
Sbjct: 213 GFARH 217
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 60.1 bits (146), Expect = 8e-12
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
++SGGQ+RR+++A + P +LILDEPTAGLDP D I ++ L +T I+ +H
Sbjct: 144 ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSH 203
Query: 119 YIEE-ARHAHKV 129
+E+ A+ A ++
Sbjct: 204 SMEDVAKLADRI 215
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 58.5 bits (142), Expect = 1e-11
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 9/79 (11%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPL----ISDTIWQHLRTLSATG 110
N+L + SGG+++R+++A ++ +++LDEPT GLDP+ + I++ L+
Sbjct: 93 NNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-----D 147
Query: 111 VTCIITTHYIEEARHAHKV 129
T I TH++ H K+
Sbjct: 148 KTLIWITHHLTGIEHMDKI 166
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 59.1 bits (144), Expect = 1e-11
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 50 GLPDP-NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA 108
GL + + G +S GQQRR+ +A + P LL+LDEP AGL+P ++ + + +R L
Sbjct: 138 GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD 197
Query: 109 T-GVTCIITTH 118
GVT ++ H
Sbjct: 198 RGGVTILLIEH 208
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 58.6 bits (142), Expect = 2e-11
Identities = 24/67 (35%), Positives = 43/67 (64%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
Q S G ++R+ +A+ +++ P LLILDEPT GLDP+ + + +R+ G+T I+++H
Sbjct: 123 KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH 182
Query: 119 YIEEARH 125
+ E +
Sbjct: 183 ILSEVQQ 189
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 58.4 bits (142), Expect = 2e-11
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
++SGGQ++RI++A ++ P LLILDEPT+ LD + I L L G+T + +H
Sbjct: 141 ELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH 200
Query: 119 YIEEARH 125
+ H
Sbjct: 201 DLALVEH 207
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 58.3 bits (141), Expect = 3e-11
Identities = 25/65 (38%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTHY 119
+SGG+ +R+S+A T+ ++P +L+LDEPT+ LDP ++ I + + L + +T I TH
Sbjct: 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191
Query: 120 IEEAR 124
+E+A+
Sbjct: 192 MEQAK 196
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 58.5 bits (142), Expect = 3e-11
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT--GVTCIIT 116
G +S G+QRR+ +A ++ P LLILDEP GLD + + + L L+A+ +
Sbjct: 170 GSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFV 229
Query: 117 THYIEEA 123
TH+ EE
Sbjct: 230 THHAEEI 236
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 58.2 bits (141), Expect = 3e-11
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
++SGGQQ+R+++A + P L++ DEPT+ LDP + + + ++ L+ G+T +I TH
Sbjct: 135 SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTH 194
Query: 119 YIEEAR 124
I A
Sbjct: 195 EIGFAE 200
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 58.3 bits (141), Expect = 5e-11
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
Q+SGGQQ+R+++A ++ P +L+LDEP + LD + D + L+T+ G+T + TH
Sbjct: 100 QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159
Query: 119 YIEEA 123
EEA
Sbjct: 160 DQEEA 164
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 57.7 bits (139), Expect = 5e-11
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A + P LL+LDEPT+ LDP+ S I + L+ LS ++ I+ TH +
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHN-LSMIMVTHNM 201
Query: 121 EEAR 124
++ +
Sbjct: 202 QQGK 205
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 58.1 bits (141), Expect = 5e-11
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
P + G +SGG+++R++ A ++ P LL DEPT+GLD ++ ++ Q L+ L+ G T
Sbjct: 160 VPGRVKG-LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKT 218
Query: 113 CIITTH 118
I T H
Sbjct: 219 IICTIH 224
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 57.9 bits (141), Expect = 6e-11
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 50 GLP-DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA 108
GLP DP++ +S G+Q+R+ + + LLILDEPTA L P +D +++ LR L+A
Sbjct: 129 GLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA 188
Query: 109 TGVTCIITTHYIEEA-RHAHKV 129
G T I TH ++E A +V
Sbjct: 189 EGKTIIFITHKLKEVMAIADRV 210
Score = 40.2 bits (95), Expect = 1e-04
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 52 PDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
P P++ +SGG Q+++ +A + P LLI +PT GLD
Sbjct: 395 PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLD 435
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 57.5 bits (139), Expect = 7e-11
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHY 119
+SGG+++R+++A + P +L+LDEPTAGLDP + L L T G+T I +TH
Sbjct: 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197
Query: 120 IE 121
++
Sbjct: 198 LD 199
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 57.7 bits (140), Expect = 7e-11
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 53 DPNSLCG----QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA 108
DP+ ++SGGQQ+R+ VA + P +L++DEP LDP+ + + ++ L
Sbjct: 124 DPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQK 183
Query: 109 T-GVTCIITTHYIEEA 123
G T + TH I+EA
Sbjct: 184 ELGKTIVFVTHDIDEA 199
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 55.9 bits (136), Expect = 8e-11
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIIT 116
++SGG+++R+ +A + P +L+LDEPT+ LD + + LR L+ G T ++
Sbjct: 95 FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV 154
Query: 117 THYIEEA-RHAHKV 129
H + A R+A +V
Sbjct: 155 LHDLNLAARYADRV 168
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 57.7 bits (139), Expect = 1e-10
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 16 LYFRWKGSHLRELFHPTTVPIPSVYFPWYISLLNGLPDPNSLCGQVSGGQQRRISVAVTM 75
LY R +G E+ I S+ Y + L G SGG +R++S A+ +
Sbjct: 2035 LYARLRGVPAEEIEKVANWSIQSLGLSLY---------ADRLAGTYSGGNKRKLSTAIAL 2085
Query: 76 MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEE 122
+ P L++LDEPT G+DP +W + ++ G ++T+H +EE
Sbjct: 2086 IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEE 2132
Score = 55.4 bits (133), Expect = 6e-10
Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGG QR++SVA+ + +++LDEPT+G+DP +IW L +G T I++TH++
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM 1120
Query: 121 EEA 123
+EA
Sbjct: 1121 DEA 1123
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 56.1 bits (136), Expect = 1e-10
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPL-ISDTIWQHLRTLSATGVTCIITT 117
S G ++R+ +A+ ++ +P LLILDEPT GLDP I + + + + +L G+T +I++
Sbjct: 125 KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKE-LRELILSLRDQGITVLISS 183
Query: 118 HYIEE 122
H + E
Sbjct: 184 HLLSE 188
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 56.3 bits (137), Expect = 1e-10
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTC 113
N G +SGG+Q+ +++A +M P LL+LDEP+ GL P I + I++ ++ L G+T
Sbjct: 131 NQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTI 190
Query: 114 IITTHYIEEARH 125
++ A
Sbjct: 191 LLVEQNARFALE 202
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 57.2 bits (138), Expect = 1e-10
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
++SGG Q+R+ +A + P +L++DE + LDPLI D++ L+ L AT T + TH
Sbjct: 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITH 188
Query: 119 YIEEA 123
++EA
Sbjct: 189 DLDEA 193
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 56.5 bits (137), Expect = 2e-10
Identities = 25/74 (33%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 50 GLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA 108
GL D + Q+SGGQ++R+++A + ++P +L+ DE T+ LDP + +I + L+ ++
Sbjct: 130 GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINR 189
Query: 109 T-GVTCIITTHYIE 121
G+T ++ TH +E
Sbjct: 190 ELGLTIVLITHEME 203
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 56.3 bits (136), Expect = 2e-10
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
+SGGQQ+R+++A + P +++ DEPT+ LDP + + + ++ L+ G T ++ TH
Sbjct: 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTH 210
Query: 119 YIEEARH 125
+ AR
Sbjct: 211 EMGFARD 217
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 56.3 bits (135), Expect = 2e-10
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++SGGQ RR+++A + P +L+LDEPTAGLDP + Q ++ +G T ++ TH
Sbjct: 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL 203
Query: 120 IEE 122
+++
Sbjct: 204 MDD 206
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 56.2 bits (136), Expect = 2e-10
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTHYI 120
SGGQ++R+++A + P +I DEPTA LDP + ++ L G+T I+ THY+
Sbjct: 146 SGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYM 205
Query: 121 EEARHAHKV 129
EEA A ++
Sbjct: 206 EEAVEADRI 214
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 55.8 bits (135), Expect = 2e-10
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITT 117
Q+SGG+++R+++A + P LL+LDEP + LD + + L+ + + I T
Sbjct: 130 AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT 189
Query: 118 HYIEEA 123
H + EA
Sbjct: 190 HDLSEA 195
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 56.0 bits (135), Expect = 2e-10
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++SGGQ RR+++A M + P +L LDEP AGLDP + Q + G T I+ TH
Sbjct: 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204
Query: 120 IEE-ARHAHKV 129
+++ A +A V
Sbjct: 205 MDDVAEYADDV 215
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 56.0 bits (136), Expect = 2e-10
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
++SGG+++R+ +A + +L+LDEPT+ LD + + LR L+ G+T ++ H
Sbjct: 138 ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLH 197
Query: 119 YIEEA-RHAHKV 129
+ A R+A +
Sbjct: 198 DLNLAARYADHL 209
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 55.8 bits (135), Expect = 2e-10
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITT 117
++SGGQQ+R+ VA + P LL++DEP LDP+ D + + + L G T + T
Sbjct: 134 HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVT 193
Query: 118 HYIEEA 123
H I+EA
Sbjct: 194 HDIDEA 199
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 55.5 bits (134), Expect = 3e-10
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
G+ S G ++++++A ++H P +L+LDEPT+GLD ++ L G I ++H
Sbjct: 132 GEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSH 191
Query: 119 YIEEA 123
++E
Sbjct: 192 IMQEV 196
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 55.8 bits (135), Expect = 3e-10
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
Q+SGGQ++R+++A + P +L+LDEP LD + + + LR L GVT + TH
Sbjct: 137 QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196
Query: 119 YIEEA-RHAHKV 129
EEA A +V
Sbjct: 197 DQEEALELADRV 208
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 55.8 bits (135), Expect = 3e-10
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++S G Q++I ++H P LLILDEP +GLDP+ + + + L G T I ++H
Sbjct: 130 ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR 189
Query: 120 IEEA 123
+E
Sbjct: 190 MEHV 193
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 55.5 bits (134), Expect = 3e-10
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++SGGQ RR+++A + P +L+LDEPTAGLDP + + L +G+T ++ TH
Sbjct: 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHL 204
Query: 120 IEE 122
+++
Sbjct: 205 MDD 207
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 55.6 bits (134), Expect = 4e-10
Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPL-ISDTIWQHLRTLSATGVTCIITTHY 119
+S GQ++R+++A ++ P +L+LDEPTAGLDP+ +S+ + + G+T II TH
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD 201
Query: 120 IE 121
I+
Sbjct: 202 ID 203
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 54.9 bits (133), Expect = 4e-10
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114
S +SGG++RR+ +A + +P L+LDEP AG+DP+ I + ++ L G+ +
Sbjct: 128 KSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVL 187
Query: 115 ITTHYIEE 122
IT H + E
Sbjct: 188 ITDHNVRE 195
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 55.6 bits (134), Expect = 4e-10
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
+SGGQ+RR+++A + P +LI DEPTAGLDP + Q + A T + TH
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
Query: 120 IE 121
+E
Sbjct: 236 ME 237
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 55.8 bits (135), Expect = 4e-10
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGGQ +R+++A + LL+LDEPTA LD + + LR L A G T ++ TH +
Sbjct: 460 SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRAL-AQGRTVLLVTHRLA 518
Query: 122 EARHAHKV 129
A A ++
Sbjct: 519 LAALADRI 526
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 55.5 bits (133), Expect = 4e-10
Identities = 27/64 (42%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++SGGQQ+ + +A T+ +P +L+LDEPT+ LDP ++ I + +R+L A +T II TH
Sbjct: 163 RLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL-ADRLTVIIVTHN 221
Query: 120 IEEA 123
+ +A
Sbjct: 222 LAQA 225
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 54.8 bits (132), Expect = 5e-10
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQ++RI++A ++H+P +LI DE T+ LD I +++ + A G T II H +
Sbjct: 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRL 197
Query: 121 EEARHAHKV 129
++A ++
Sbjct: 198 STVKNADRI 206
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 54.9 bits (132), Expect = 5e-10
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++SGGQQ+R+ +A + P +++LDEPT+ LDP+ + I + L LS T +I TH
Sbjct: 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSEN-YTIVIVTHN 204
Query: 120 IEEA 123
I +A
Sbjct: 205 IGQA 208
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 55.2 bits (133), Expect = 5e-10
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH--LRTLSATGVTCIITT 117
Q+SGGQ++R+++A ++ P LL+LDEP LD + D + Q + L GVTC++ T
Sbjct: 149 QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRM-QLEVVDILERVGVTCVMVT 207
Query: 118 HYIEEA 123
H EEA
Sbjct: 208 HDQEEA 213
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 54.9 bits (133), Expect = 6e-10
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
G++SGGQ++R+ +A + +P LL+LDEP G+D I+ L+ L G T ++ TH
Sbjct: 138 GELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTH 197
Query: 119 YIEEARH 125
+
Sbjct: 198 DLGLVMA 204
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 55.3 bits (133), Expect = 6e-10
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114
NS +SGG+++R+S+A M+ +P LLILDEPT+GLD + + L +L+ G T +
Sbjct: 201 NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIV 260
Query: 115 ITTH 118
+ H
Sbjct: 261 TSMH 264
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 53.8 bits (130), Expect = 7e-10
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGGQ++R+ +A + +P +L+LDEP + LD + Q + L A G T I+ H E
Sbjct: 98 SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157
Query: 122 EARHAHKV 129
A ++
Sbjct: 158 TLASADRI 165
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 55.1 bits (133), Expect = 7e-10
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
Q+SGGQQ+R+S+A +M+ +++ DEPT LD + + L L G T II TH
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 119 YIEEARHAHKV 129
+ A A +V
Sbjct: 203 DPQVAAQAERV 213
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 53.7 bits (129), Expect = 9e-10
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 48 LNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS 107
LNG D Q+S GQQRR+++A ++ L ILDEPT LD + +
Sbjct: 115 LNGFED--RPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172
Query: 108 ATGVTCIITTH 118
A G ++TTH
Sbjct: 173 ARGGMVVLTTH 183
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 53.5 bits (129), Expect = 9e-10
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 48 LNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS 107
L G D Q+S GQQRR+++A + L ILDEPT LD + LR
Sbjct: 117 LTGFED--LPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL 174
Query: 108 ATGVTCIITTH 118
A G ++TTH
Sbjct: 175 ARGGIVLLTTH 185
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 53.7 bits (129), Expect = 1e-09
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCII 115
L G++SGG+++R+++A ++ +L+LDEP A LDP + + + L A T +T ++
Sbjct: 125 LPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLM 184
Query: 116 TTHYIEEARH 125
TH E+A+
Sbjct: 185 VTHQPEDAKR 194
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 53.7 bits (130), Expect = 1e-09
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGGQQ+R+ +A + + P +L+LDEPT+ LDP+ + I + + L T +I TH ++
Sbjct: 143 SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ 201
Query: 122 EA 123
+A
Sbjct: 202 QA 203
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 53.9 bits (130), Expect = 1e-09
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118
Q+S GQ+ R +A ++H P +L LDEPT GLD + + I L+ + G T ++T+H
Sbjct: 153 QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212
Query: 119 YI 120
Y+
Sbjct: 213 YM 214
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 53.9 bits (130), Expect = 1e-09
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTHYI 120
SGGQ RR+++A + P +L+LDEPTAGLDP + + L G+T ++ TH +
Sbjct: 147 SGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM 206
Query: 121 EE-ARHAHKV 129
E+ AR+A ++
Sbjct: 207 EDAARYADQI 216
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 53.7 bits (130), Expect = 1e-09
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 50 GLPDPNSLCG----QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRT 105
G+PDP ++SGG ++R+ +A+ + +P LLI DEPT LD + I L+
Sbjct: 139 GIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE 198
Query: 106 L-SATGVTCIITTHYIE-EARHAHKV 129
L G I+ TH + A A +V
Sbjct: 199 LQREKGTALILITHDLGVVAEIADRV 224
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 54.1 bits (131), Expect = 2e-09
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+S GQ +R+++A ++ LL+LDEPTA LD + Q L S T ++ TH +
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR-RQTTLMVTHQL 544
Query: 121 EE 122
E+
Sbjct: 545 ED 546
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 53.6 bits (129), Expect = 2e-09
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118
Q+SGGQ R+I++ + +P +++LDEPTAGLDP + + L++L T I+ +H
Sbjct: 145 QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204
Query: 119 YIEE-ARHAHKVPI 131
+ E AR+A +V +
Sbjct: 205 DMNEVARYADEVIV 218
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 53.9 bits (130), Expect = 2e-09
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 9/74 (12%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPL----ISDTIWQHLRTLSATGVTCII 115
++SGG++RR+++A ++H L +LDEPT GLDP+ + +++H G T ++
Sbjct: 474 RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-----GKTLLM 528
Query: 116 TTHYIEEARHAHKV 129
TH + ++
Sbjct: 529 VTHRLRGLERMDRI 542
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 53.9 bits (130), Expect = 2e-09
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA--TGVTCIITTH 118
+SGG+++R+++A ++ +L+LDEPT LD +D + L L A +G T ++ TH
Sbjct: 472 LSGGERQRLALARALLADAPILLLDEPTEHLDAETADEL---LEDLLAALSGRTVVLITH 528
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 53.0 bits (128), Expect = 2e-09
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIIT 116
+SGG+++R+S+A ++ +L D T GLD + I + +RT++ T ++
Sbjct: 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVS 175
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 53.4 bits (129), Expect = 2e-09
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114
+S +SGG++RR+ +A + +P ++LDEP AG+DP+ I + ++ L G+ +
Sbjct: 134 DSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVL 193
Query: 115 ITTHYIEE 122
IT H + E
Sbjct: 194 ITDHNVRE 201
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 53.3 bits (128), Expect = 2e-09
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114
S +SGGQQ+R+ +A T+ P ++++DEPT+ LDP+ + I + + L T +
Sbjct: 140 KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKN-YTIV 198
Query: 115 ITTHYIEEAR 124
I TH +++AR
Sbjct: 199 IVTHSMQQAR 208
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 53.2 bits (127), Expect = 2e-09
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 44 YISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPL---LLILDEPTAGLDPLISDTIW 100
+ L L +S G +R +++ + ++ + LL++DEP GL P + +
Sbjct: 173 LFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLV 232
Query: 101 QHLRTLSATGVTCIITTH 118
+ L+ LS G I TTH
Sbjct: 233 ELLKELSEKGAQLIFTTH 250
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 53.7 bits (130), Expect = 2e-09
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
Q+SGG+QRR+ +A ++H LL+LDEPT GLD I + L A T ++ TH
Sbjct: 475 QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH-AQNKTVLMITH 532
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 53.1 bits (128), Expect = 2e-09
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGGQQ+R+ +A + P +L+LDEPT+ LDP+ + I + ++ L T +I TH ++
Sbjct: 146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHNMQ 204
Query: 122 EAR 124
+A
Sbjct: 205 QAA 207
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 53.4 bits (128), Expect = 2e-09
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 11/75 (14%)
Query: 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDP----LISDTIWQHLRTLSA 108
D N+L +SGGQQ+R+ VA T+ P +L+LDEPT+ LDP I D I Q LR
Sbjct: 177 DKNAL--GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLI-QELR---- 229
Query: 109 TGVTCIITTHYIEEA 123
T +I TH +++A
Sbjct: 230 GSYTIMIVTHNMQQA 244
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 52.6 bits (126), Expect = 2e-09
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
Q+SGG+Q+R+ +A +++ P +L+ DEPT LD +S+ I + + GVT ++ TH
Sbjct: 137 QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 53.1 bits (128), Expect = 3e-09
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
+P +L SGGQ++R+++A + +P ++I DE T+ LDP I + + L T
Sbjct: 139 EPQNL----SGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKK 194
Query: 113 CIIT-THYIEEARHAHKV 129
+I+ TH ++EA A KV
Sbjct: 195 TLISITHDMDEAILADKV 212
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 52.9 bits (127), Expect = 3e-09
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 45 ISLLN--GLPDP-NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQ 101
+ LL+ GL D + + Q+SGGQQ+R+++A + P +++ DE T+ LDP + +
Sbjct: 128 MELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN 187
Query: 102 HLRTLSA-TGVTCIITTHYIEEARHAHKV 129
+R L++ +T ++ TH E A +
Sbjct: 188 VIRRLASEHDLTMLLVTH---EMGFAREF 213
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 52.2 bits (125), Expect = 4e-09
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 6/71 (8%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPL-ISD--TIWQHLRTLSATGV 111
+S+ +SGG++RR+ +A + +P ++LDEP AG+DP+ + D I +HLR +G+
Sbjct: 132 DSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD---SGL 188
Query: 112 TCIITTHYIEE 122
+IT H + E
Sbjct: 189 GVLITDHNVRE 199
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 52.2 bits (125), Expect = 4e-09
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
G++SGGQ++R+ VA + P +L+LDEP GLD + + + L+ G ++TTH
Sbjct: 112 GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
Query: 119 YIEEARHA 126
+ +A
Sbjct: 172 DLAQAMAT 179
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 52.3 bits (125), Expect = 4e-09
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A M SP +L++DEP + LDP+ + + + + L T +I TH +
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKD-YTIVIVTHNM 205
Query: 121 EEA 123
++A
Sbjct: 206 QQA 208
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 52.3 bits (125), Expect = 5e-09
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A T+ P ++++DEPT+ LDP+ + I + + L + T II TH +
Sbjct: 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKES-YTIIIVTHNM 209
Query: 121 EEA 123
++A
Sbjct: 210 QQA 212
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 52.1 bits (125), Expect = 5e-09
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A + P +L++DEP + LDP+ + I + + L A T II TH +
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR-YTIIIVTHNM 208
Query: 121 EEA 123
++A
Sbjct: 209 QQA 211
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 52.0 bits (125), Expect = 5e-09
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTHYI 120
SGG+Q+R+++A ++ +P +L+LDEP + LD + + + L+ + GVT + TH
Sbjct: 131 SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF 190
Query: 121 EEAR 124
EEA
Sbjct: 191 EEAW 194
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 52.0 bits (124), Expect = 6e-09
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGGQQ+RI +A + P +++LDEPT+ LDP+ S I + L L T I+ TH ++
Sbjct: 149 SGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ-YTFIMVTHNLQ 207
Query: 122 EA 123
+A
Sbjct: 208 QA 209
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 51.7 bits (124), Expect = 7e-09
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHL-RTLSATGVTCIITT 117
GQ+SGG ++R+++A + P +L+LDEP LD L + + L + VT ++ T
Sbjct: 113 GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVT 172
Query: 118 HYIEEA 123
H ++EA
Sbjct: 173 HDVDEA 178
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 52.1 bits (125), Expect = 7e-09
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
+SGGQ++RI++A ++ +P +LI DE T+ LD I +++R + G T II H
Sbjct: 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR-GRTVIIIAH 650
Query: 119 YIEEARHAHKV 129
+ R ++
Sbjct: 651 RLSTVRACDRI 661
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 51.6 bits (124), Expect = 8e-09
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGGQQ+R+ +A + P +L+LDEPT+ LDP+ + I + + L + T +I TH ++
Sbjct: 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-SKYTIVIVTHNMQ 228
Query: 122 EA 123
+A
Sbjct: 229 QA 230
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 51.6 bits (123), Expect = 9e-09
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHY 119
+SGGQQ+R+++A +M +++ DEP A LDP + + LR ++ G+T ++T H
Sbjct: 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212
Query: 120 IEEA 123
++ A
Sbjct: 213 VDYA 216
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 51.5 bits (123), Expect = 1e-08
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A T+ P +L+LDEP + LDP IS+ + L T + II TH +
Sbjct: 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDP-ISNAKIEELITELKEEYSIIIVTHNM 223
Query: 121 EEA 123
++A
Sbjct: 224 QQA 226
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 51.3 bits (123), Expect = 1e-08
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTHY 119
+SGGQ++R+++A + P ++ILDE T+ LDP + I + +R L +T I TH
Sbjct: 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203
Query: 120 IEEARHAHKV 129
I+EA A +V
Sbjct: 204 IDEANMADQV 213
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 49.8 bits (120), Expect = 1e-08
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHL-RTLSATGVTCIITTH 118
Q+SGG++ R+++A ++ +P LL+LDEPT LD ++I + L L T I+ +H
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL---ESI-EALEEALKEYPGTVILVSH 125
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 51.2 bits (122), Expect = 1e-08
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIIT 116
L +SGGQQ+R+ +A + P +L+ DEPT+ LDP+ + +I + + L VT +I
Sbjct: 158 LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK-NKVTILIV 216
Query: 117 THYIEEA 123
TH +++A
Sbjct: 217 THNMQQA 223
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 51.3 bits (123), Expect = 1e-08
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A + SP +++LDEPT+ LDP+ + I + L L T ++ T +
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDD-YTMLLVTRSM 207
Query: 121 EEA 123
++A
Sbjct: 208 QQA 210
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 51.5 bits (124), Expect = 1e-08
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 9/73 (12%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDP----LISDTIWQHLRTLSATGVTCIIT 116
+SGGQ +R+++A ++ LL+LDEPTA LD +I + + + T ++
Sbjct: 457 LSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-----QKTVLVI 511
Query: 117 THYIEEARHAHKV 129
TH +E+A A ++
Sbjct: 512 THRLEDAADADRI 524
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 51.2 bits (123), Expect = 1e-08
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGV 111
+P+ L SGGQ++R+++A + P ++ILDE T+ LDP + + +R L G+
Sbjct: 137 EPHRL----SGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGI 192
Query: 112 TCIITTHYIEEARHAHKV 129
T + TH ++EA A +V
Sbjct: 193 TVLSITHDLDEAAQADRV 210
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 51.2 bits (123), Expect = 1e-08
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 47 LLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106
L N L D G +SGGQ++ +S+ + +H P +L+LDE TA LDP ++ + + +
Sbjct: 138 LENRLSDR---IGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKI 194
Query: 107 -SATGVTCIITTHYIEEA 123
+T ++ TH +E+A
Sbjct: 195 VEEHKLTTLMVTHNMEDA 212
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 49.2 bits (118), Expect = 1e-08
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 50 GLPD--PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTA 89
GLPD G +SGGQ++R+++A ++ P LL+LDEPTA
Sbjct: 78 GLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 50.6 bits (122), Expect = 1e-08
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 46 SLLNGLPDP-NSLCG----QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIW 100
+ LPD ++L G Q+SGGQ++RI++A ++ +P +L+LDE T+ LD S+ +
Sbjct: 120 DFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALD-AESEKLV 178
Query: 101 QHLRTLSATGVTCIITTHYIEEARHAHKV 129
Q + G T I+ H + R+A +
Sbjct: 179 QEALDRAMKGRTTIVIAHRLSTIRNADLI 207
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 50.7 bits (121), Expect = 1e-08
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A + P +++LDEPT+ LDP+ S I L L T I+ TH +
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQ-YTIILVTHSM 207
Query: 121 EEA 123
+A
Sbjct: 208 HQA 210
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 50.9 bits (122), Expect = 2e-08
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
Q+SGG ++R+ +A + P LL+LDEP LD L + + + L L TG ++ TH
Sbjct: 132 QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITH 191
Query: 119 YIEEA 123
IEEA
Sbjct: 192 DIEEA 196
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 50.5 bits (121), Expect = 2e-08
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++SGGQQ+R+++A + P +++ DEPT+ LDP + + +R L+ T +I TH
Sbjct: 144 RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203
Query: 120 IEEAR 124
+ AR
Sbjct: 204 MSFAR 208
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 50.4 bits (121), Expect = 2e-08
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 46 SLLNGLPDPNSLCGQVSGGQQRRISVA-VTMMHSPLLLILDEPTAGLDPLISDTIWQHLR 104
L LP G++SGGQ++R+++A + P+LL LDEP + LDP + + +
Sbjct: 121 GFLKRLP------GELSGGQRQRVALARCLVREQPILL-LDEPFSALDPALRAEMLALVS 173
Query: 105 TLSA-TGVTCIITTHYIEEARH 125
L +T ++ TH+ E+A
Sbjct: 174 QLCDERKMTLLMVTHHPEDAAR 195
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 50.5 bits (121), Expect = 2e-08
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
GQ+S G ++R+ +A ++H P +LILDEPT GLDP I ++ + T I++TH
Sbjct: 132 GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKTIILSTH 190
Query: 119 YIEE 122
++E
Sbjct: 191 IMQE 194
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 50.7 bits (122), Expect = 2e-08
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
SGGQ++R+ +A ++ +P +LILDE T+ LDP I +LR G TCII H
Sbjct: 617 SGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAH 670
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 50.2 bits (121), Expect = 2e-08
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITT 117
G +SGGQQ+++++A ++ P LL+LDEPT G+ P I I + +R L A G+ ++
Sbjct: 130 GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVE 189
Query: 118 HYIEEARHA 126
Y++ AR
Sbjct: 190 QYLDFAREL 198
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 50.3 bits (121), Expect = 3e-08
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
Q+SGGQQ+R+++A +++ P +L+LDE + LD + + L+ L G+T + TH
Sbjct: 144 QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTH 203
Query: 119 YIEEA 123
EEA
Sbjct: 204 DQEEA 208
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 50.1 bits (120), Expect = 3e-08
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGG+Q+R+++A + +L+LDEPTA LD + + + A G I H E
Sbjct: 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD-E 209
Query: 122 EARHA 126
E R
Sbjct: 210 EVREL 214
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 49.9 bits (120), Expect = 3e-08
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
Q+SGGQQ+R+++A +++ P +L+LDEP LD + + L+ L G+T + TH
Sbjct: 130 QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTH 189
Query: 119 YIEEA 123
EEA
Sbjct: 190 DQEEA 194
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 50.2 bits (120), Expect = 3e-08
Identities = 22/65 (33%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++SGGQQ+R+ +A + P +L++DEP + LDP+ ++ I ++ L T I+ TH
Sbjct: 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKN-FTIIVVTHS 207
Query: 120 IEEAR 124
+++A+
Sbjct: 208 MKQAK 212
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 50.3 bits (121), Expect = 3e-08
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITTH 118
Q+SGGQ++R+++A ++ P + +LDEP + LD + + ++ L G T I TH
Sbjct: 133 QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTH 192
Query: 119 YIEEA 123
EA
Sbjct: 193 DQVEA 197
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 49.5 bits (119), Expect = 3e-08
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 65 QQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
Q++R+++ V + P +L LDEPT+GLD + I + L+ L+ +G + T H
Sbjct: 113 QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 49.9 bits (119), Expect = 3e-08
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
G +SGG+Q+ +++ +M P LL+LDEP+ GL P+I I+ + L G+T
Sbjct: 136 GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMT 189
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 50.1 bits (120), Expect = 3e-08
Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGGQQ+R+ +A + P +L++DEPT+ LDP+ + I + ++ L T +I TH ++
Sbjct: 148 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKD-YTIVIVTHNMQ 206
Query: 122 EA 123
+A
Sbjct: 207 QA 208
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 50.1 bits (120), Expect = 3e-08
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
+S GQ++R+++A + P +++LDEP A LDP +T+ + L L G T I+ TH
Sbjct: 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATH 196
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 49.9 bits (119), Expect = 3e-08
Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A + +P +L++DEPT+ LDP+ + I + + L T +I TH +
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEK-YTIVIVTHNM 214
Query: 121 EEA 123
++A
Sbjct: 215 QQA 217
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 49.9 bits (120), Expect = 4e-08
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
++SGGQ++RI +A + +P L++ DEP + LD + I L+ L G+T + +H
Sbjct: 109 ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISH 168
Query: 119 YIEEARH-AHKV 129
+ R+ + ++
Sbjct: 169 DLSVVRYISDRI 180
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 49.6 bits (119), Expect = 4e-08
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
Q+SGGQ++R+++A + P +L+LDEP LD + + + LR L VT + TH
Sbjct: 136 QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTH 195
Query: 119 YIEEA 123
EEA
Sbjct: 196 DQEEA 200
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 49.5 bits (119), Expect = 4e-08
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGGQQ+R+ +A + P +L++DEPT+ LDP+ + I + + L T +I TH ++
Sbjct: 151 SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL-KKKYTIVIVTHNMQ 209
Query: 122 EA 123
+A
Sbjct: 210 QA 211
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 49.6 bits (118), Expect = 4e-08
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A T+ SP ++++DEP + LDP IS T + L T +I TH +
Sbjct: 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDP-ISTTKIEDLIHKLKEDYTIVIVTHNM 205
Query: 121 EEARHAHK 128
++A K
Sbjct: 206 QQATRVSK 213
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 49.4 bits (118), Expect = 5e-08
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GV 111
+PN+L SGGQ++R+++A + +P ++ILDE T+ LDP + +R + + +
Sbjct: 139 EPNAL----SGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNI 194
Query: 112 TCIITTHYIEEARHAHKV 129
T I TH + EA A V
Sbjct: 195 TIISITHDLSEAMEADHV 212
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 49.7 bits (119), Expect = 5e-08
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHY 119
+S GQ+ R +A ++H P +L LDEPT GLD I + L+ + T ++TTH
Sbjct: 157 LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI 216
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 49.5 bits (119), Expect = 5e-08
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD----PLISDTIWQHLRTLSATGVTCIITT 117
SGG+++R + ++ P L ILDEP +GLD ++++ I L G +I T
Sbjct: 146 SGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGI----NALREEGRGVLIIT 201
Query: 118 HY 119
HY
Sbjct: 202 HY 203
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 49.7 bits (119), Expect = 5e-08
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 43 WYISLLNGLPDPNSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDT 98
+ +L +G +++ G+ +SGGQ++R+++A ++ +P +LILDE T+ LD
Sbjct: 447 FIANLPDGY---DTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEAL 503
Query: 99 IWQHLRTLSATGVTCIITTHYIEEARHAHKV 129
I L+ L G T +I H + ++A ++
Sbjct: 504 IQDALKKLLK-GRTTLIIAHRLSTIKNADRI 533
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 49.1 bits (118), Expect = 6e-08
Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITT 117
Q+SGGQ++R+ +A + ++P +L+ DE T+ LDP + +I LR ++ G+T ++ T
Sbjct: 139 AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLIT 198
Query: 118 HYIE 121
H +E
Sbjct: 199 HEME 202
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 49.2 bits (118), Expect = 6e-08
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDP 93
N G ++ GQQRR+ +A M+ P +L+LDEP AGL+P
Sbjct: 148 NRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNP 186
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 48.2 bits (116), Expect = 7e-08
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGG Q+++ +A + P +LILDEPT G+D I++ +R L+ G ++ + ++
Sbjct: 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD 165
Query: 122 EARH 125
E
Sbjct: 166 ELLG 169
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 48.6 bits (116), Expect = 7e-08
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITT 117
Q+SGG+Q+R+++A P +L DEPT LD D I L L+ G T ++ T
Sbjct: 145 AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVT 204
Query: 118 H 118
H
Sbjct: 205 H 205
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 48.8 bits (117), Expect = 7e-08
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTC 113
+ ++SGG Q+R+ +A + P +L++DE + LDPLI + L L A T
Sbjct: 155 HKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTI 214
Query: 114 IITTHYIEEA-RHAHKVPI 131
+ TH ++EA R ++ I
Sbjct: 215 VFITHDLDEALRLGDRIAI 233
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 48.8 bits (116), Expect = 7e-08
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A T+ P ++++DEPT+ LDP IS + L T +I TH +
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDP-ISTLKIEDLMVELKKEYTIVIVTHNM 206
Query: 121 EEA 123
++A
Sbjct: 207 QQA 209
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 48.8 bits (116), Expect = 8e-08
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114
++ G++SGGQQ+R+ +A + P +L+ DEPTA LDP + I L +T +
Sbjct: 141 DAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIV 199
Query: 115 ITTHYIEEA 123
+ TH+ ++A
Sbjct: 200 LVTHFPQQA 208
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 48.9 bits (116), Expect = 8e-08
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++SGGQQ+R+ +A T+ P ++++DEP + LDP+ + I + + L T II TH
Sbjct: 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK-YTIIIVTHN 206
Query: 120 IEEA 123
+++A
Sbjct: 207 MQQA 210
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 49.0 bits (116), Expect = 8e-08
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A + P +L++DEPT+ LDP+ + I + + L + II TH +
Sbjct: 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKK-YSIIIVTHSM 284
Query: 121 EEAR 124
+A+
Sbjct: 285 AQAQ 288
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 48.9 bits (116), Expect = 1e-07
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 12/92 (13%)
Query: 47 LLNGLPDP-NSLCG----QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDP----LISD 97
++ LPD +L G ++SGGQ++RIS+A ++ +P +LILDE T+ LD L+
Sbjct: 561 FVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQK 620
Query: 98 TIWQHLRTLSATGVTCIITTHYIEEARHAHKV 129
TI +L+ + +T II H + R+A+ +
Sbjct: 621 TI-NNLKG-NENRIT-IIIAHRLSTIRYANTI 649
Score = 42.3 bits (99), Expect = 2e-05
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDP----LISDTI 99
+SGGQ++RI++A ++ P +L+LDE T+ LD LI TI
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 48.5 bits (116), Expect = 1e-07
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGGQQ+R+ +A + P +L+LDEP + LDP+ + I + + L T +I TH ++
Sbjct: 158 SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ 216
Query: 122 EA 123
+A
Sbjct: 217 QA 218
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 47.8 bits (115), Expect = 1e-07
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH-LRTLSATGVTCIITTHYI 120
SGGQ++RIS+A + + +LD+P + +D + I+++ + L T I+ TH +
Sbjct: 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL 188
Query: 121 EEARHAHKV 129
+ HA ++
Sbjct: 189 QLLPHADQI 197
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 48.2 bits (115), Expect = 1e-07
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGGQQ+R+ +A + P +L++DEP + LDP+ + + + + L T II TH ++
Sbjct: 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ 223
Query: 122 EA 123
+A
Sbjct: 224 QA 225
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 48.5 bits (116), Expect = 1e-07
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
+SGG Q+++ +A + SP LLI+DEPT G+D + I+Q +R+++A V
Sbjct: 396 HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVA 455
Query: 113 CIITTHYIEEARH 125
+ + +EE
Sbjct: 456 VLFISSDLEEIEQ 468
Score = 44.3 bits (105), Expect = 4e-06
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 75 MMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARH-AHKV 129
+M +LILDEPTA L P ++ ++ +R L A GV + +H + E R A ++
Sbjct: 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRI 210
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 48.7 bits (116), Expect = 1e-07
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 53 DPNSL-CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGV 111
D + G GGQQ+ + +A + LLILDEP++ L ++ + +R L A GV
Sbjct: 133 DNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGV 192
Query: 112 TCIITTHYIEE 122
C+ +H + E
Sbjct: 193 ACVYISHKLNE 203
Score = 42.1 bits (99), Expect = 2e-05
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
G++SGG Q++ +A ++ +P +LILDEPT G+D I++ + L+ GV I+ +
Sbjct: 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSS 461
Query: 119 YIEE 122
+ E
Sbjct: 462 ELAE 465
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 48.4 bits (116), Expect = 1e-07
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 17/73 (23%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRT---------LSATG 110
Q+SGGQQ+R+++A ++ P +L+LDEP + LD LR G
Sbjct: 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALD--------AKLREQMRKELKELQRELG 187
Query: 111 VTCIITTHYIEEA 123
+T + TH EEA
Sbjct: 188 ITFVYVTHDQEEA 200
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 48.3 bits (115), Expect = 1e-07
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A + P ++++DEP + LDP+ + I + L A T +I TH +
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEEL-AEEYTVVIVTHNM 239
Query: 121 EEA 123
++A
Sbjct: 240 QQA 242
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 48.3 bits (115), Expect = 1e-07
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTHY 119
+SGG+++R+ +A + P L + DEPT LDP + + L A+G++ ++T+H+
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 120 IE 121
E
Sbjct: 229 PE 230
Score = 43.6 bits (103), Expect = 7e-06
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 13/77 (16%)
Query: 46 SLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPL----ISDTIWQ 101
+L+ PD ++S G++ R+++A ++ P ++ILDEPT +DP+ ++ +I
Sbjct: 419 EILDKYPD------ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI-- 470
Query: 102 HLRTLSATGVTCIITTH 118
L+ T II +H
Sbjct: 471 -LKAREEMEQTFIIVSH 486
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 47.9 bits (114), Expect = 1e-07
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A T+ +P ++++DEP + LDP+ + I + L T II TH +
Sbjct: 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKI-EDLIEDLKKEYTVIIVTHNM 208
Query: 121 EEA 123
++A
Sbjct: 209 QQA 211
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 48.1 bits (114), Expect = 1e-07
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A T+ P +++ DEPT+ LDP+ + I + L T +I TH +
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKD-YTIVIVTHNM 213
Query: 121 EEA 123
++A
Sbjct: 214 QQA 216
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 48.1 bits (114), Expect = 2e-07
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 18/131 (13%)
Query: 1 MVYQPPEKFQV-----VSVGLYF-RWKGSHLRELFHPTTVPIPSVYFPWYISLLNGLPDP 54
MV+Q P F + V+ GL R+KG + H +L + + D
Sbjct: 93 MVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQ----------GAALWDEVKDK 142
Query: 55 NSLCG-QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTC 113
+ G +SGGQQ+R+ +A + P +L+LDEP + LDP+ + + + + L T
Sbjct: 143 LKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD-YTI 201
Query: 114 IITTHYIEEAR 124
+ TH +++A
Sbjct: 202 ALVTHNMQQAI 212
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 47.7 bits (114), Expect = 2e-07
Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITT 117
++SGG+++R+++A +++ P L++ DEPT LD + I+ + L + ++ T
Sbjct: 140 SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVT 199
Query: 118 HYIEEARHAHKV 129
H +E A+ +V
Sbjct: 200 HDLELAKKLDRV 211
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 48.0 bits (115), Expect = 2e-07
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
+P + G + GQQ+ + +A + LLILDEPTA L + + +R L A G+
Sbjct: 136 NPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIA 195
Query: 113 CIITTHYIEE 122
CI +H + E
Sbjct: 196 CIYISHKLNE 205
Score = 39.9 bits (94), Expect = 1e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
++SGG Q++ +A ++ +P +LILDEPT G+D
Sbjct: 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 47.9 bits (114), Expect = 2e-07
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A + P ++++DEP + LDP+ + I + + L T II TH +
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNM 210
Query: 121 EEA 123
++A
Sbjct: 211 QQA 213
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 47.2 bits (113), Expect = 2e-07
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
+SGGQ++ +++A +++ P +L+LDEPT+ +D + + + LR L T II TH
Sbjct: 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITH 197
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 47.5 bits (113), Expect = 2e-07
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A T+ P ++++DEP + LDP+ + I + + L T +I TH +
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN-FTIVIVTHNM 213
Query: 121 EEA 123
++A
Sbjct: 214 QQA 216
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 47.7 bits (113), Expect = 2e-07
Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A + P +L++DEP + LDP+ + + + + +L + +T I TH +
Sbjct: 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE-LTIAIVTHNM 209
Query: 121 EEA 123
++A
Sbjct: 210 QQA 212
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 47.6 bits (114), Expect = 2e-07
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 50 GLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTI-W--QHLRTL 106
G PD + +SGG +RR+++A ++ P LL+LDEPT LD ++I W +L+
Sbjct: 143 GFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD---LESIEWLEDYLKRY 199
Query: 107 SATGVTCIITTH 118
T I+ +H
Sbjct: 200 PG---TVIVVSH 208
Score = 46.9 bits (112), Expect = 4e-07
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
SGG++ R+ +A ++ P LL+LDEPT LD +++ L T ++ +H
Sbjct: 441 SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDI---ESLEALEEALLDFEGTVLLVSH 494
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 47.8 bits (114), Expect = 2e-07
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
Q+SGGQ++RI++A ++ P +LILDE T+ LD + + + S T ++ H
Sbjct: 617 QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHR 673
Query: 120 IEEARHAHKV 129
+ A ++
Sbjct: 674 LSTVERADQI 683
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 47.5 bits (113), Expect = 3e-07
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
Q+SGGQ +RI++A + P L++LDE + LD ++ I + LR L A G + TH
Sbjct: 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITH 209
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 46.8 bits (112), Expect = 3e-07
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD----PLISDTIWQHLRTLSATGVTCIITT 117
SGG+++R + ++ P L ILDEP +GLD L+++ I L G + +I T
Sbjct: 106 SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI----NKLREEGKSVLIIT 161
Query: 118 HY 119
HY
Sbjct: 162 HY 163
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 47.1 bits (112), Expect = 3e-07
Identities = 22/70 (31%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
++SGG+++R+++A ++++P L++ DEPT LD +D+I+Q L L+ G ++ TH
Sbjct: 145 ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTH 204
Query: 119 YIEEARHAHK 128
++ A+ +
Sbjct: 205 DLQLAKRMSR 214
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 47.3 bits (113), Expect = 3e-07
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
SGGQ++RI++A + P L++LDEP + LD + ++ L A G+T ++ TH
Sbjct: 456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITH 512
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 47.0 bits (112), Expect = 3e-07
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 13/69 (18%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPL-------ISDTIWQHLRTLSATGVTCI 114
SGGQ++R+++A ++H P LL+LDEP LD L + +++WQ G T +
Sbjct: 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ------HGFTVL 188
Query: 115 ITTHYIEEA 123
+ TH + EA
Sbjct: 189 LVTHDVSEA 197
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 46.8 bits (112), Expect = 4e-07
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGG+++R+++A ++ +P +L+LDE T+ LD I LR +S G T I+ H +
Sbjct: 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS 197
Query: 122 EARHAHKV 129
+A K+
Sbjct: 198 TIVNADKI 205
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 47.3 bits (113), Expect = 4e-07
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 45 ISLLN--GLPDP----NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDT 98
+ LL G+P+P ++ ++SGGQ++R+ +A+ + + P LLI DEPT LD +
Sbjct: 136 LELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQ 195
Query: 99 IWQHLRTLSAT-GVTCIITTH 118
I L+ L A G+ + TH
Sbjct: 196 ILDLLKELQAELGMAILFITH 216
Score = 45.3 bits (108), Expect = 1e-06
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106
SGGQ++RI++A ++ P L++LDEPT+ LD + + LR L
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL 472
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 47.1 bits (112), Expect = 4e-07
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
D N+L +SGGQQ+R+ +A + P ++++DEP + LDP+ + I + L A T
Sbjct: 195 DDNAL--GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEEL-AEEYT 251
Query: 113 CIITTHYIEEA 123
++ TH +++A
Sbjct: 252 VVVVTHNMQQA 262
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 46.8 bits (111), Expect = 4e-07
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPL----ISDTIWQHLRTLSATGVTCIIT 116
+SGG+++RI++ + P +L+LDE T+ LD I + I R + V +
Sbjct: 134 LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI---HRYVREQNVAVLWI 190
Query: 117 THYIEEA-RHAHKV 129
TH ++A RHA KV
Sbjct: 191 THDKDQAIRHADKV 204
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 46.9 bits (111), Expect = 4e-07
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A + P +L++DEPT+ LDP + I + L T II TH +
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKV-TTIIIVTHNM 207
Query: 121 EEA 123
+A
Sbjct: 208 HQA 210
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 46.9 bits (112), Expect = 4e-07
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 44 YISLLN-GLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH 102
+I L N P G +SGG Q+++++A +M P +LILDEPT G+D I+Q
Sbjct: 378 FIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQL 437
Query: 103 LRTLSATGVTCII 115
+ A G++ I+
Sbjct: 438 INQFKAEGLSIIL 450
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 46.7 bits (111), Expect = 4e-07
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 48 LNGLPD--PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRT 105
L GL D PN Q+SGGQ++R+++A + P +L+LDEP LD + + LR
Sbjct: 120 LEGLGDRYPN----QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRK 175
Query: 106 L-SATGVTCIITTHYIEEA 123
L VT + TH EEA
Sbjct: 176 LHDEVHVTTVFVTHDQEEA 194
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 46.5 bits (111), Expect = 5e-07
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++SGGQ++RI++A ++ P +LILDE T+ LD + L L T + H
Sbjct: 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHR 196
Query: 120 IEEARHAHKV 129
+ +A ++
Sbjct: 197 LSTIENADRI 206
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 46.1 bits (110), Expect = 5e-07
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 58 CGQVSGGQQRRISVA-VTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIIT 116
GQ+S GQQRR+++A + + +P L ILDEP LD + + +A G ++T
Sbjct: 128 VGQLSAGQQRRVALARLWLSPAP-LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT 186
Query: 117 TH 118
TH
Sbjct: 187 TH 188
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 46.6 bits (111), Expect = 5e-07
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118
Q+SGGQ++R+ +A + +P LL+LDEP LD + + L L TG ++ TH
Sbjct: 128 QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITH 187
Query: 119 YIEEA 123
IEEA
Sbjct: 188 DIEEA 192
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 46.8 bits (111), Expect = 5e-07
Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 48 LNGLPDP-NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106
L GL D +S +SGGQ++R+++A + +P +L+ DE T+ LDP + +I + L+ +
Sbjct: 127 LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEI 186
Query: 107 SAT-GVTCIITTHYIE 121
+ G+T ++ TH ++
Sbjct: 187 NRRLGLTILLITHEMD 202
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 46.4 bits (110), Expect = 5e-07
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114
N +SGGQ++R+ +A + P +L++DEPTA +DP+ + I + L L T +
Sbjct: 144 NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK-KEYTIV 202
Query: 115 ITTH 118
+ TH
Sbjct: 203 LVTH 206
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 46.6 bits (111), Expect = 6e-07
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 32 TTVPIPSVYFPWYISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGL 91
+ F I LL L G++SGG+++R+++ ++ SP LL++DEP A L
Sbjct: 103 ARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162
Query: 92 DPLISDTIWQHLRTLSA-TGVTCIITTHYIEE-ARHAHKV 129
D I +L L A G+ + +H ++E R A +V
Sbjct: 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRV 202
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 46.2 bits (109), Expect = 6e-07
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114
NS Q+SGGQQ+R+++A + P +L++DEPT+ +D + S I + L T + +
Sbjct: 148 NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI-EKLITELKNEIAIV 206
Query: 115 ITTHYIEEA 123
I +H ++
Sbjct: 207 IVSHNPQQV 215
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 45.6 bits (109), Expect = 6e-07
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
SGG+Q+R++ A ++H P + LDE T+ LD D ++Q L+ L T ++
Sbjct: 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVIS 143
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 46.2 bits (110), Expect = 7e-07
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITT 117
++SGG Q+R+ +A + + P +L++DE + LDPLI + L L A T + T
Sbjct: 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT 222
Query: 118 HYIEEA 123
H ++EA
Sbjct: 223 HDLDEA 228
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 46.2 bits (109), Expect = 7e-07
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLIS---DTIWQHLRTLSATGVTCIIT 116
+SGGQQ+R+ +A + P +L++DEP GLDP+ S +++ Q LR S +T +I
Sbjct: 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE--LTMVIV 207
Query: 117 TH 118
+H
Sbjct: 208 SH 209
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 46.0 bits (109), Expect = 7e-07
Identities = 24/69 (34%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCII 115
L Q+SGGQ++R+++A ++ +L+LDEP + LDPL+ + + ++ L S T ++
Sbjct: 125 LPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLM 184
Query: 116 TTHYIEEAR 124
TH++ +AR
Sbjct: 185 VTHHLSDAR 193
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 45.7 bits (108), Expect = 9e-07
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQ + +++A + P LI DE T+ LDP + + ++ L G T + TH +
Sbjct: 137 LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNL 196
Query: 121 EEARHAHKV 129
EE A ++
Sbjct: 197 EELHDADRI 205
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 46.0 bits (109), Expect = 9e-07
Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A + P ++++DEPT+ LDP+ + + + ++ L + II TH +
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKD-YSIIIVTHNM 226
Query: 121 EEA 123
++A
Sbjct: 227 QQA 229
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 45.4 bits (108), Expect = 1e-06
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITT 117
+SGGQ++R+++A ++H P L++ DEPTA LD + + ++ L+ G T +I T
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVT 199
Query: 118 H 118
H
Sbjct: 200 H 200
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 46.0 bits (110), Expect = 1e-06
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
+SGGQ++ +++A ++ P +L+LDEPT+ +D + L+ A G T ++ TH
Sbjct: 601 SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTH 658
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 45.3 bits (108), Expect = 1e-06
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
S G+++ +++A M+ P +LILDE T+ +D I + L L G T II H +
Sbjct: 141 SQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS 199
Query: 122 EARHAHKV 129
++A K+
Sbjct: 200 TIKNADKI 207
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 45.4 bits (107), Expect = 1e-06
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+S GQ++R+++A ++ L+LDEPTAGLDP + +R + A G II++H I
Sbjct: 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI 196
Query: 121 E 121
+
Sbjct: 197 D 197
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 45.9 bits (109), Expect = 1e-06
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 65 QQRRISVAVTMMHSP-LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
Q++R+++ V ++ P LLL LDEPT+GLD + +I + +R L+ G + T H
Sbjct: 906 QRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIH 960
Score = 31.2 bits (71), Expect = 0.14
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106
VSGG+++R+S+A + + D T GLD S T + +R L
Sbjct: 210 VSGGERKRVSIAEASLGGAKIQCWDNATRGLD---SATALEFIRAL 252
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 45.2 bits (107), Expect = 1e-06
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
Q+SGGQ++R+++A ++ +P +LILDE T+ LD + Q L T ++ H
Sbjct: 149 SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD-WPERRTVLVIAH 207
Query: 119 YIEEARHAHKV 129
+ A ++
Sbjct: 208 RLSTVERADQI 218
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 44.9 bits (107), Expect = 1e-06
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 47 LLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106
LL+ P Q+SGGQ++R+++ ++ P + ++DEP + LD + + L+ L
Sbjct: 123 LLDRKPK------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRL 176
Query: 107 SAT-GVTCIITTHYIEEA 123
G T I TH EA
Sbjct: 177 QQRLGTTTIYVTHDQVEA 194
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 44.9 bits (107), Expect = 2e-06
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 14/67 (20%)
Query: 59 GQVSGGQQRRISVA---VTMMHSPLLLILDEPTAGLDP----LISDTIWQHLRTLSATGV 111
G +S GQ+RR+++A V+ + P+ ILDEPTA LD L ++ I HL A G
Sbjct: 126 GYLSAGQKRRVALARLLVS--NRPIW-ILDEPTAALDAAAVALFAELIRAHL----AQGG 178
Query: 112 TCIITTH 118
I TH
Sbjct: 179 IVIAATH 185
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 45.2 bits (107), Expect = 2e-06
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
+SGG+++R+ VA + P LL+LDEPT LD +R L+ATGVT + H
Sbjct: 138 LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALH 195
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 44.8 bits (106), Expect = 2e-06
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
SGG Q+R+ +A ++ P L+ +DEPT GLD + + LR L G+ II TH
Sbjct: 148 AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207
Query: 119 YIEEAR 124
+ AR
Sbjct: 208 DLGVAR 213
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 45.1 bits (107), Expect = 2e-06
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT 109
SGGQ++RI++A ++ P L+ILDEPT+ LD + I L++L
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474
Score = 43.9 bits (104), Expect = 5e-06
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106
Q+SGG+++R+ +A+ ++ P LLI DEPT LD + I Q LR L
Sbjct: 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLREL 202
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 44.7 bits (106), Expect = 2e-06
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITT 117
Q+SGGQ +R+ +A + P LLILDE + LD ++ + + L+ L G C+ T
Sbjct: 150 PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFIT 209
Query: 118 H 118
H
Sbjct: 210 H 210
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 44.7 bits (106), Expect = 2e-06
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 45 ISLLN--GLPDPNSLCG----QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDT 98
I LLN G+PDP S Q+SGG +R+ +A+ + P LLI DEPT LD I
Sbjct: 132 IDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQ 191
Query: 99 IWQHLRTLSAT-GVTCIITTH---YIEEARH 125
I + L L + ++ TH + EA H
Sbjct: 192 IIELLLELQQKENMALVLITHDLALVAEAAH 222
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 44.3 bits (105), Expect = 3e-06
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGGQQ+R+ +A + SP ++++DEP + LDP+ + + + + L T +I TH ++
Sbjct: 165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQN-YTIVIVTHSMQ 223
Query: 122 EA 123
+A
Sbjct: 224 QA 225
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 44.4 bits (105), Expect = 3e-06
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
SGG Q+R+ +A ++ P L+ +DEPT GLD + + LR L G+ +I TH
Sbjct: 151 TFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210
Query: 119 YIEEAR 124
+ AR
Sbjct: 211 DLAVAR 216
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 44.1 bits (105), Expect = 3e-06
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTHYI 120
SGG Q+R+ +A ++ P L+ +DEPT GLD + + LR L G+ +I TH +
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212
Query: 121 EEAR 124
AR
Sbjct: 213 AVAR 216
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 44.2 bits (104), Expect = 3e-06
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A + P +L++DEP + LDP+ + + + L T I+ TH +
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ-YTIIMVTHNM 220
Query: 121 EEA 123
++A
Sbjct: 221 QQA 223
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 43.9 bits (104), Expect = 4e-06
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
G +SGGQQ+R+ +A + P +L++DEP + LDP IS + L T +I TH
Sbjct: 147 GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP-ISTLAIEDLINELKQDYTIVIVTH 205
Query: 119 YIEEA 123
+++A
Sbjct: 206 NMQQA 210
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 43.9 bits (103), Expect = 4e-06
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQQ+R+ +A + P ++++DEP + LDP+ + I + ++ L T I TH +
Sbjct: 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQN-YTIAIVTHNM 206
Query: 121 EEARHA 126
++A A
Sbjct: 207 QQAARA 212
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 44.0 bits (104), Expect = 5e-06
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
+SGGQ++RI++A ++ +LILDE T+ LD + I +L L+ T I H
Sbjct: 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL--LNLQDKTIIFVAH 667
Query: 119 YIEEARHAHKV 129
+ A+ + K+
Sbjct: 668 RLSVAKQSDKI 678
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 43.7 bits (103), Expect = 5e-06
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
G++SGGQ++R+ +A + +++LDEP G+D I LR L G T +++TH
Sbjct: 141 GELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 43.6 bits (103), Expect = 5e-06
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
++SGG RR ++A + P L++ DEP G DP+ + + + L SA GVTC++ +H
Sbjct: 143 ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSH 202
Query: 119 YIEE 122
+ E
Sbjct: 203 DVPE 206
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 43.8 bits (104), Expect = 5e-06
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
SGG+Q+R++ A ++H P + LDE T+ LD D ++Q L+ T I H
Sbjct: 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE-ELPDATVISVGH 572
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 43.5 bits (103), Expect = 6e-06
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGGQ++RI++A ++ +L+LDE T+ LD + Q L TL G T +I H +
Sbjct: 478 SGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA 536
Query: 122 EARHAHKV 129
A ++
Sbjct: 537 TVLKADRI 544
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 43.6 bits (103), Expect = 7e-06
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 59 GQVSGGQQRRISVAVTM-MHSPLLLILDEPTAGLDPLI----SDTIWQHLRTLSATGVTC 113
G++SGG Q+R+ +A +P+LL +DEP + LDPLI D + + L T
Sbjct: 163 GELSGGMQQRVGLARAFATEAPILL-MDEPFSALDPLIRTQLQDELLELQSKLKK---TI 218
Query: 114 IITTHYIEEA 123
+ +H ++EA
Sbjct: 219 VFVSHDLDEA 228
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 43.5 bits (103), Expect = 7e-06
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPL 94
S GQQR + ++ P LLILDEP GLDPL
Sbjct: 403 SWGQQRLALIVRALVKHPTLLILDEPLQGLDPL 435
Score = 39.2 bits (92), Expect = 2e-04
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
+S G+ R+ + +M P LLILDEP GLD + + L +L +G+T
Sbjct: 135 YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGIT 187
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 42.8 bits (101), Expect = 9e-06
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCII 115
L Q+SGG+Q+R+++A P +L DEPT LD D I L +L+ G T I+
Sbjct: 143 LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIL 202
Query: 116 TTH 118
TH
Sbjct: 203 VTH 205
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 43.1 bits (102), Expect = 9e-06
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 35 PIPSVYFPWYISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPL 94
F ++LL + G +SGG+++R+++ ++ +P LL++DEP A LD
Sbjct: 103 KSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP 162
Query: 95 ISDTIWQHLRTLS-ATGVTCIITTHYIEE-ARHAHKV 129
I +L L + + +H ++E R A +V
Sbjct: 163 RKREILPYLERLRDEINIPILYVSHSLDEVLRLADRV 199
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 43.1 bits (101), Expect = 9e-06
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPL-ISDTIWQHLRTLSATGVTCIITTH 118
++SGGQ+RR+++A + L+LDEPT GLDP D I R I+ TH
Sbjct: 150 ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTH 209
Query: 119 YIEE 122
+++
Sbjct: 210 NMDQ 213
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 43.0 bits (102), Expect = 1e-05
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Query: 51 LPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTI-W--QHLRTLS 107
P ++ ++SGG++RR+++ ++ P +L+LDEPT LD ++++ W QHL+
Sbjct: 152 CPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD---AESVAWLEQHLQEYP 208
Query: 108 ATGVTCIITTH 118
T + TH
Sbjct: 209 G---TVVAVTH 216
Score = 38.0 bits (89), Expect = 6e-04
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 44 YISLLN--GLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
Y+ N G D GQ+SGG++ R+ +A T+ +L+LDEPT LD
Sbjct: 426 YVGRFNFKG-SDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 43.3 bits (102), Expect = 1e-05
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 50 GLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT 109
GLP L S Q++R+++AV ++ +P ++ +DEPT+GLD + + + +R T
Sbjct: 1013 GLPGVTGL----STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068
Query: 110 GVTCIITTH 118
G T + T H
Sbjct: 1069 GRTVVCTIH 1077
Score = 28.7 bits (64), Expect = 0.87
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL 106
+SGGQ++R++ ++ L +DE + GLD S T +Q ++ L
Sbjct: 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD---SSTTYQIVKCL 379
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 42.6 bits (101), Expect = 1e-05
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
SGGQ++RI++A +M P +++ DEP + LD
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 42.8 bits (102), Expect = 1e-05
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 51 LPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTI-W--QHLRTLS 107
P ++ ++SGG++RR+++ ++ P +L+LDEPT LD ++++ W Q L
Sbjct: 154 CPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD---AESVAWLEQFLHDYP 210
Query: 108 ATGVTCIITTH 118
T V + TH
Sbjct: 211 GT-VVAV--TH 218
Score = 34.7 bits (81), Expect = 0.007
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 44 YISLLN--GLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
Y+ N G D G +SGG++ R+ +A T+ +L+LDEPT LD
Sbjct: 428 YVGRFNFKG-GDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 42.7 bits (100), Expect = 1e-05
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 49 NGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA 108
+ PD ++SGG ++R+ +A + +P +L++DE + LDPLI + L L A
Sbjct: 159 HSYPD------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212
Query: 109 TGV-TCIITTHYIEEA 123
T + +H ++EA
Sbjct: 213 KHQRTIVFISHDLDEA 228
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 42.4 bits (100), Expect = 2e-05
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 50 GLPDPNSLCG----QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRT 105
GLPDP + Q+SGG +R+ +A+ ++ P LI DEPT LD + + + LR
Sbjct: 111 GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 106 L-SATGVTCIITTH 118
L G ++ TH
Sbjct: 171 LRQLFGTGILLITH 184
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 42.1 bits (100), Expect = 2e-05
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 57 LCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIIT 116
Q+S GQQRR+++A + L ILDEP +D + L + G I+T
Sbjct: 126 PVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILT 185
Query: 117 TH 118
TH
Sbjct: 186 TH 187
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 42.6 bits (101), Expect = 2e-05
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
SGGQ++RI++A + P L++LDEP + LD + + A G T ++ H
Sbjct: 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 42.0 bits (99), Expect = 2e-05
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
Q+SGGQQ+R+++A ++ P +L+ DEP + LD + ++ + +R L +T + TH
Sbjct: 136 QISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTH 195
Query: 119 YIEEA 123
EA
Sbjct: 196 DQSEA 200
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 42.0 bits (99), Expect = 2e-05
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
SGG+++RI++A H P ILDE T+ + + +++ R G+T +H
Sbjct: 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF---GITLFSVSH 637
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 41.9 bits (98), Expect = 2e-05
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL--SATGVTCIITT 117
Q+SGG Q+RI++A + P +L+LDEP + LD I + + + L +T + T
Sbjct: 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVT 196
Query: 118 HYIEEA 123
H ++A
Sbjct: 197 HDQDDA 202
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 41.5 bits (97), Expect = 2e-05
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH--LRTLSATGVTCIITTH 118
+SGGQ++RI VA + + ++ LD+P + LD +SD + Q L+ L T ++ TH
Sbjct: 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTH 200
Query: 119 YIEEARHA 126
++ HA
Sbjct: 201 KLQYLPHA 208
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 41.6 bits (97), Expect = 3e-05
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS-ATGVTCIITT 117
++SGGQ++R++VA + P ++ILDE T+ LDP I + + + +T + T
Sbjct: 139 ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSIT 198
Query: 118 HYIEEARHAHKV 129
H ++EA + ++
Sbjct: 199 HDLDEAASSDRI 210
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 42.1 bits (99), Expect = 3e-05
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 23/79 (29%)
Query: 59 GQVSGGQQRRIS----VAVTMM---HSPL-LLILDEPTAGLDPLISDTIWQHLRTLSAT- 109
+SGG++ S +A++ + + L LL LDEP LD + L L+
Sbjct: 814 KTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDE-------ERLEKLAEIL 866
Query: 110 ------GVTCIITTHYIEE 122
G II +H +EE
Sbjct: 867 EELLSDGRQIIIISH-VEE 884
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 41.4 bits (97), Expect = 3e-05
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDP----LISDTIWQHLRTLSATG 110
++L Q+S GQ++R+++A + L +LDEP A LD L++ I HLR A
Sbjct: 132 DTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAA- 190
Query: 111 VTCIITTH 118
++TTH
Sbjct: 191 ---LVTTH 195
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 41.4 bits (97), Expect = 4e-05
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS---ATGVTCIIT 116
Q+SGG ++R+ +A+ + P +LI DEPT LD I I Q ++ L + GV I
Sbjct: 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGV--IFI 225
Query: 117 TH 118
TH
Sbjct: 226 TH 227
Score = 30.6 bits (69), Expect = 0.22
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTI 99
SGGQ++RI +A + +P ++I DE + LD I I
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQI 502
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 41.1 bits (97), Expect = 5e-05
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 59 GQVSGGQ-QR-RISVAVTMMHSPL-----LLILDEPTAGLDPLISDTIWQHLRTLSATGV 111
Q+SGG+ QR R++ V + + LL+LDEP LD + + L L G+
Sbjct: 125 NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGI 184
Query: 112 TCIITTHYIEE-ARHAHKV 129
++++H + RHA +V
Sbjct: 185 AVVMSSHDLNHTLRHADRV 203
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 40.9 bits (96), Expect = 5e-05
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 9/68 (13%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDP-----LISDTIWQHLRTLSATGVTCI 114
++SGGQ++R+++A + P ++ILDE T+ LDP LI TI + +R +T I
Sbjct: 140 RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK-TI-KGIR--DDYQMTVI 195
Query: 115 ITTHYIEE 122
TH ++E
Sbjct: 196 SITHDLDE 203
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 40.7 bits (96), Expect = 6e-05
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 62 SGGQQRRISVAVTMMHSPL---LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
SGG+ +RI +A T + S L L +LDEP+ GL P +D + + L+ L G T ++ H
Sbjct: 139 SGGEAQRIRLA-TQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197
Query: 119 YIEEARHA 126
+ R A
Sbjct: 198 DEDTIRAA 205
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 40.7 bits (96), Expect = 6e-05
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
Q+SGG+++R+++A ++ P +LILDE T+ LD + L L G T I H
Sbjct: 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHR 529
Query: 120 IEEARHAHKV 129
+ R+A ++
Sbjct: 530 LSTVRNADRI 539
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 40.0 bits (94), Expect = 6e-05
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 62 SGGQQRRISVAVTMMHSP--LLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
SGG+ +R+ +A + P L ILDEP+ GL + + + ++ L G T I+ H
Sbjct: 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 40.6 bits (95), Expect = 7e-05
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 44 YISLLNGLPD--PNSLCGQVSGGQQRRISVAVTMMH-------SPLLLILDEPTAGLDPL 94
++ L D S Q+SGG+ +R+ +A ++ + LL+LDEP LD
Sbjct: 108 DVAGALALDDKLGRST-NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVA 166
Query: 95 ISDTIWQHLRTLSATGVTCIITTHYIEEA-RHAHKV 129
+ + L L G+ ++++H + RHAH+
Sbjct: 167 QQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRA 202
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 40.0 bits (94), Expect = 7e-05
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 56 SLCGQVSGGQQRRISVAVTMMHSPL----LLILDEPTAGLDPLISDTIWQHLRTLSATGV 111
Q+SGG++ ++A+ + + L L ILDE GLDP + + + G
Sbjct: 73 FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGA 132
Query: 112 TCIITTHY 119
I+ TH
Sbjct: 133 QVIVITHL 140
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 40.2 bits (94), Expect = 8e-05
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHL-RTLSATGVTCIITTH 118
+SGGQ+ R+++ ++ P L+LDEP + LD + D Q + + A G+ + TH
Sbjct: 134 TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTH 193
Query: 119 YIEEA 123
+++
Sbjct: 194 DLQDV 198
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 40.4 bits (95), Expect = 8e-05
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGG+++R+++A T++ +P +LILDE T+ LD I LR +SA G T ++ H +
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTTLVIAHRL 458
Query: 121 EEARHAHKV 129
A ++
Sbjct: 459 STIIDADEI 467
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 40.1 bits (94), Expect = 9e-05
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
SGG+Q+R+++A + +L+LDEPTA LD + + +R A G ++ + E
Sbjct: 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARG-AALVGIFHDE 212
Query: 122 EARHA 126
E R A
Sbjct: 213 EVREA 217
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 40.2 bits (95), Expect = 9e-05
Identities = 21/63 (33%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
Q+SGGQ++R+++A + +P +L+ DE T+ LDP + +I + L+ ++ G+T ++ TH
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITH 199
Query: 119 YIE 121
++
Sbjct: 200 EMD 202
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 40.3 bits (95), Expect = 9e-05
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTI-W 100
DP++ +SGG R+ ++ ++ +P +L+LDEPT LD +TI W
Sbjct: 149 DPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD---IETIEW 194
Score = 32.2 bits (74), Expect = 0.063
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
SGG++ R+ +A + LLILDEPT LD
Sbjct: 442 SGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 40.0 bits (94), Expect = 1e-04
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 46 SLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRT 105
LL LP GQ+SGGQ++R+++A ++ +L+LDEP + LDP + + +
Sbjct: 121 DLLARLP------GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ 174
Query: 106 LSAT-GVTCIITTHYIEEA 123
+ +T ++ +H +E+A
Sbjct: 175 VCQERQLTLLMVSHSLEDA 193
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 39.9 bits (93), Expect = 1e-04
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117
CG +S GQ+R++++ M L +LDEP LD L TI ++ A G ++T+
Sbjct: 125 CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTS 184
Query: 118 H 118
H
Sbjct: 185 H 185
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 39.7 bits (93), Expect = 1e-04
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
Q+SGGQ++R+++A + P +L+LDEP LD + + + LR L T + TH
Sbjct: 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTH 195
Query: 119 YIEEA 123
EEA
Sbjct: 196 DQEEA 200
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 39.7 bits (93), Expect = 1e-04
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIIT-TH 118
SGG ++R+ +A+ ++ P LLI DEPT LD + I L L T II TH
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 39.0 bits (91), Expect = 3e-04
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
++SGG Q+++ ++ + P ++I DEPT G+D I++ +R L+ G ++ +
Sbjct: 408 TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSS 467
Query: 119 YIEE 122
+ E
Sbjct: 468 ELPE 471
Score = 35.9 bits (83), Expect = 0.003
Identities = 17/72 (23%), Positives = 34/72 (47%)
Query: 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
D + +S ++ + +A T+M ++I+DEPT+ L D ++ + L G
Sbjct: 138 DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTA 197
Query: 113 CIITTHYIEEAR 124
+ +H + E R
Sbjct: 198 IVYISHKLAEIR 209
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 38.5 bits (90), Expect = 3e-04
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 60 QVSGGQQRRISVAVTMMH------SPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTC 113
+SGG+Q+R+ +A + S L LDEPT+ LD + R L+ G
Sbjct: 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAV 194
Query: 114 IITTH 118
+ H
Sbjct: 195 LAVLH 199
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 38.8 bits (91), Expect = 3e-04
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
G +SGGQ++R+ +A ++ P +L+ DE T+ LD + + L L VT I+ H
Sbjct: 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLK---VTRIVIAH 643
Query: 119 YIEEARHAHKV 129
+ R+A ++
Sbjct: 644 RLSTIRNADRI 654
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 38.2 bits (89), Expect = 4e-04
Identities = 15/33 (45%), Positives = 26/33 (78%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
++SGG+ +R+ +A +++ P LL+LDEPT G+D
Sbjct: 120 KLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 38.1 bits (89), Expect = 4e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
++SGGQ++R +A+ + ++LDEP LD S I + LR L+ G T ++ H
Sbjct: 135 ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLH 194
Query: 119 YIEEA 123
I A
Sbjct: 195 DINFA 199
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 38.0 bits (89), Expect = 4e-04
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD----PLISDTIWQHLRTLSATGVTCIITT 117
SGG+++R + + P L ILDE +GLD ++++ I LR + +I T
Sbjct: 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGI-NRLRE---PDRSFLIIT 201
Query: 118 HY 119
HY
Sbjct: 202 HY 203
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 38.5 bits (90), Expect = 4e-04
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
+SGGQ++R+++A ++ +LILDE T+ LD
Sbjct: 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALD 501
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 38.1 bits (89), Expect = 5e-04
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGL 91
+ L +S GQ++ + + + + P LL+LDEP AG+
Sbjct: 142 DRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 38.2 bits (89), Expect = 5e-04
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 43 WYISLLN-GLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQ 101
W I + P + G +SGG Q+++ + ++ P +L+LDEPT G+D I+Q
Sbjct: 373 WVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ 432
Query: 102 HLRTLSATGVTCII 115
+ L+ II
Sbjct: 433 LIAELAKKDKGIII 446
Score = 30.1 bits (68), Expect = 0.31
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
DP + +S Q + I +A ++ ++I+DEPT+ L + ++ +R L G
Sbjct: 127 DPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCG 186
Query: 113 CIITTHYIEE 122
+ +H +EE
Sbjct: 187 IVYISHKMEE 196
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 37.4 bits (87), Expect = 6e-04
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 30/117 (25%)
Query: 38 SVY----FPWYISLLNGLPDPNSL-----------------CGQVSGGQQRRISVAVTMM 76
+VY FPW I N PDP ++SGG+++RIS+ +
Sbjct: 96 TVYDNLIFPWQIR--NQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQ 153
Query: 77 HSPLLLILDEPTAGLDP----LISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKV 129
P +L+LDE T+ LD +++ I +++R + + TH +E HA KV
Sbjct: 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVRE---QNIAVLWVTHDKDEINHADKV 207
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 37.1 bits (86), Expect = 0.001
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+S G ++ + +A +++ +L+LDEP+A LDP+ I + L+ + T I++ H I
Sbjct: 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQ-AFADCTVILSEHRI 197
Query: 121 E 121
E
Sbjct: 198 E 198
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 37.1 bits (86), Expect = 0.001
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTI--WQHLRTLSATGVTCIITTH 118
+SGG+++R+ +A + + +L+LDEPTA LD I+ + + +R L G T + H
Sbjct: 140 LSGGERQRVLLARALAQATPVLLLDEPTASLD--INHQVRTLELVRRLVDDGKTAVAAIH 197
Query: 119 YIEEA 123
++ A
Sbjct: 198 DLDLA 202
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 37.1 bits (86), Expect = 0.001
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
+ SGG++ R+ +A+ + P LL+LDEPT LD
Sbjct: 428 TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
Score = 33.2 bits (76), Expect = 0.028
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 46 SLLNGLPDPNSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQ 101
SLL+GL N + SGG + R+++A ++ LL+LDEPT LD + IW
Sbjct: 131 SLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD--LDAVIWL 188
Query: 102 HLRTLSATGVTCIITTH 118
S G T I+ +H
Sbjct: 189 EKWLKSYQG-TLILISH 204
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 36.8 bits (86), Expect = 0.001
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGL 91
+ L G +S GQ++ + + + +M P LL+LDEP AG+
Sbjct: 138 DRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 36.2 bits (84), Expect = 0.002
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
SGGQ++RI++A ++ +LILDE T+ LD
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALD 512
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 36.3 bits (84), Expect = 0.002
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 34 VPIP---SVYFPWYISLLNGLPDPNSLCGQVS--GGQQRRISVAVTMMHSPLLLILDEPT 88
+PIP P++ + + D S+ +S G + IS ++ L++ DE
Sbjct: 353 IPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELG 412
Query: 89 AGLDPL----ISDTIWQHLRTLSATGVTCIITTHYIE 121
AG DP ++ +I ++L +A +ITTHY E
Sbjct: 413 AGTDPDEGSALAISILEYLLKQNA---QVLITTHYKE 446
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 36.1 bits (84), Expect = 0.002
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTI--WQHLRTLSATGVTCIITTHY 119
SGGQ++R +A+ + +++LDEPT LD I+ + + +R L+ G T + H
Sbjct: 140 SGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD--INHQVELMRLMRELNTQGKTVVTVLHD 197
Query: 120 IEEA 123
+ +A
Sbjct: 198 LNQA 201
>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2. MutS2
homologs in bacteria and eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired
and unpaired bases embedded in duplex DNA and activating
endo- and exonucleases to remove the mismatch. Members
of the MutS family also possess a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 200
Score = 35.7 bits (83), Expect = 0.002
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 35 PIP---SVYFPWYISLLNGLPDPNSLCGQVS--GGQQRRISVAVTMMHSPLLLILDEPTA 89
PIP P + ++ + D S+ +S + I+ + L++LDE +
Sbjct: 60 PIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGS 119
Query: 90 GLDPL----ISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKVP 130
G DP+ ++ I L L G I TTHY E +A+K
Sbjct: 120 GTDPVEGAALAIAI---LEELLERGALVIATTHYGELKAYAYKRE 161
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 36.0 bits (83), Expect = 0.003
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++SGG+++R+++A ++ + +L+LDE T+ LD + + L T II H
Sbjct: 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFII-AHR 529
Query: 120 IEEARHAHKV 129
+ R+A V
Sbjct: 530 LSTVRNADLV 539
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 35.8 bits (83), Expect = 0.003
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
SGGQ++RIS+A ++ + +LILD+ + +D I +LR G T II+ H
Sbjct: 453 SGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE-GRTVIISAH 508
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 36.2 bits (84), Expect = 0.003
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 11/51 (21%)
Query: 81 LLILDEPTAGLDP-----LISDTIWQHLRTLSATGVTCIITTHYIEEARHA 126
LLILDEPT LD L+ D + ++LR + II +H EE + A
Sbjct: 815 LLILDEPTPFLDEERRRKLV-DIMERYLRKIPQV----IIVSHD-EELKDA 859
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 34.9 bits (81), Expect = 0.005
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 59 GQVSGGQQR------RISVAVTMMHSPLLLILDEPTAGLDP 93
G+ SGG++ R+++A T + +L LDEPT LD
Sbjct: 114 GRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDE 154
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 34.8 bits (80), Expect = 0.007
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
SGG + RI++A + P LL+LDEPT LD
Sbjct: 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
Score = 33.7 bits (77), Expect = 0.017
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
+SGGQ+ R++ A P +L+LDEP+ LD
Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 34.9 bits (81), Expect = 0.007
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
SGG++ R+ MM P +L++DEPT +D
Sbjct: 440 SGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
Score = 29.9 bits (68), Expect = 0.33
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTI-WQHLR-TLSATGVTCIITT 117
+V+ G + R+ +A + +P +L+LDEPT LD I +TI W L L+ T II +
Sbjct: 155 EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD--I-NTIRW--LEDVLNERNSTMIIIS 209
Query: 118 H 118
H
Sbjct: 210 H 210
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 34.8 bits (80), Expect = 0.007
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQ+ RIS+A + L +LD P LD I++ T I+ T +
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 121 EEARHAHKVPI 131
E + A K+ I
Sbjct: 220 EHLKKADKILI 230
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 34.5 bits (79), Expect = 0.007
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 14/54 (25%)
Query: 39 VYFPWYISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
VY P YI L SGG+ +R+++A ++ + + DEP+A LD
Sbjct: 64 VYKPQYIDL--------------SGGELQRVAIAAALLRNATFYLFDEPSAYLD 103
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 34.9 bits (80), Expect = 0.007
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+S G ++ + +A +++ +L+LDEP+A LDP+ I + L+ S + T I++ H +
Sbjct: 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ-SFSNCTVILSEHRV 1412
Query: 121 E 121
E
Sbjct: 1413 E 1413
Score = 33.0 bits (75), Expect = 0.036
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQ+ RIS+A + L +LD P LD + I++ + T I+ T +
Sbjct: 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKL 608
Query: 121 EEARHAHKV 129
E + A K+
Sbjct: 609 EHLKKADKI 617
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 34.3 bits (78), Expect = 0.008
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 59 GQVSGGQQRRISVAVTMM--HSPLLLILDEPTAGLDPLISDTIWQHLRT------LSATG 110
+ SG + R+ +A+ + P +LILDE T+ LD + S
Sbjct: 57 KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKN 116
Query: 111 VTCIITTHYIEEARHA 126
+T I+TT+ ++ A
Sbjct: 117 LTVILTTNDEKDLGPA 132
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 34.4 bits (79), Expect = 0.008
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 45 ISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
ISL+ P + L +SGG+++R +A+ + L+LDEPT+ LD
Sbjct: 132 ISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 34.7 bits (80), Expect = 0.008
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
SGGQ +RI +A ++ P L+I DEP + LD
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALD 193
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 34.3 bits (79), Expect = 0.008
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 50 GLPDPNSLCG----QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRT 105
GL + + ++SGG +R+ +A+ ++ +I DEPT LD + I L +
Sbjct: 126 GLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLES 185
Query: 106 LSAT-GVTCIITTHYIE-EARHAHKV 129
+ + ++ TH + AR A V
Sbjct: 186 IVQKRALGMLLVTHDMGVVARLADDV 211
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 34.6 bits (80), Expect = 0.008
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
SGGQ++R+++ T++ P + +LDEP + LD
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 34.5 bits (79), Expect = 0.009
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 61 VSGGQQR------RISVAVTMMHSPLLLILDEPTAGLDP----LISDTIWQHLRTLSATG 110
+SGG++ R++VA + + LLI+DEPTA LD + D I L+ S
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIP 861
Query: 111 VTCIITTH 118
+I+ H
Sbjct: 862 QVIMISHH 869
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 34.5 bits (80), Expect = 0.010
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 14/65 (21%)
Query: 62 SGGQQRRISVAVTMMHSPL---LLILDEPTAGLDP-----LISDTIWQHLRTLSATGVTC 113
SGG+ +RI +A T + S L L +LDEP+ GL LI T+ + LR L G T
Sbjct: 483 SGGEAQRIRLA-TQIGSGLTGVLYVLDEPSIGLHQRDNERLIE-TL-KRLRDL---GNTV 536
Query: 114 IITTH 118
I+ H
Sbjct: 537 IVVEH 541
Score = 27.5 bits (62), Expect = 2.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 62 SGGQQRRISVAVTMMHS----PLLLILDEPTAGL 91
SGG+ +R+ +A + L ILDEPT GL
Sbjct: 824 SGGEAQRVKLA-KELSKRSTGKTLYILDEPTTGL 856
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 34.2 bits (79), Expect = 0.011
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 59 GQVSGGQQRRISVAVTMMHSPL---LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCII 115
G +SGG+ +RI +A T + S L L +LDEP+ GL + + L+ L G T I+
Sbjct: 487 GTLSGGEAQRIRLA-TQIGSGLTGVLYVLDEPSIGLHQRDNRRLINTLKRLRDLGNTLIV 545
Query: 116 TTHYIEEARHA 126
H + R A
Sbjct: 546 VEHDEDTIRAA 556
Score = 29.2 bits (66), Expect = 0.72
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 62 SGGQQRRISVAVTMMH---SPLLLILDEPTAGL 91
SGG+ +RI +A + L ILDEPT GL
Sbjct: 831 SGGEAQRIKLAKELSKRSTGRTLYILDEPTTGL 863
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 34.0 bits (78), Expect = 0.013
Identities = 16/63 (25%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118
+++ G+ +++ +A+ + + P LLI DEPT ++P I++ L L+ + T ++ +H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217
Query: 119 YIE 121
++
Sbjct: 218 DLQ 220
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 34.0 bits (79), Expect = 0.013
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
SGG+ +R+++A + L +LDEP+A LD
Sbjct: 455 SGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
Score = 27.9 bits (63), Expect = 1.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
++SGG+ +R+++A ++ DEPT+ LD
Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 33.8 bits (78), Expect = 0.014
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
SGG+ +R+++A + L +LDEP+A LD
Sbjct: 457 SGGELQRVAIAAALSREADLYLLDEPSAYLD 487
Score = 30.7 bits (70), Expect = 0.16
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHL------RTLSATGVT 112
++SGG+ +R+++A ++ + DEP++ LD I Q L R L+ G
Sbjct: 212 SELSGGELQRVAIAAALLRDADVYFFDEPSSYLD------IRQRLNAARVIRELAEDGKY 265
Query: 113 CIITTH 118
I+ H
Sbjct: 266 VIVVEH 271
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 34.0 bits (78), Expect = 0.017
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 50 GLP--DPNSLCGQVSGGQQRRISVAVTMMH--SPLLLILDEPTAGLDPLISDTIWQHLRT 105
GLP P +SGG+Q R ++A + + ILDEP+ GL P + + ++
Sbjct: 464 GLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKK 523
Query: 106 LSATGVTCIITTH 118
L G T ++ H
Sbjct: 524 LRDQGNTVLLVEH 536
Score = 32.1 bits (73), Expect = 0.062
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 79 PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHA 126
P L +LDE LD + LRTL + G + I H + A
Sbjct: 1721 PTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQA 1768
Score = 31.0 bits (70), Expect = 0.16
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 61 VSGGQQRRISVAVTMMHS---PLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117
+SGG+ +R+ +A ++ P L +LDEPT GL + L++L+ G T +I
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIE 869
Query: 118 H 118
H
Sbjct: 870 H 870
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 33.5 bits (77), Expect = 0.017
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
SGG+++R + + L ILDE +GLD I + + L + + I+ THY
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHY 210
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 33.5 bits (77), Expect = 0.019
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 46 SLLNGLPDP-NSLCGQ----VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIW 100
L LPD + G+ +S GQ++ +++A ++ +P +LILDE TA +D I
Sbjct: 457 ELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQ 516
Query: 101 QHLRTL 106
Q L +
Sbjct: 517 QALAAV 522
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 33.2 bits (76), Expect = 0.025
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
SGG+++R + + P L ILDE +GLD + + +L + II THY
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHY 204
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 32.4 bits (75), Expect = 0.037
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 60 QVSGGQQRRISVAVTMM------HSPLLLILDEPTAGLDP 93
Q+SGG+Q+R+ +A + P L+LDEPT+ LD
Sbjct: 134 QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS
homologs. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family also possess a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 202
Score = 32.2 bits (74), Expect = 0.038
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 68 RISVAVTMMHSPLLLILDEPTAGLDPLISDTI-WQHLRTLSATGVTCIITTHYIE 121
+ +++ L+++DE G I + L L G + TH+ E
Sbjct: 98 ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHE 152
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 32.4 bits (74), Expect = 0.041
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
S GQ++ + +A ++ P +L+LDE TA +D +D + Q T T + H
Sbjct: 127 SQGQRQLLCLARALLKRPRVLVLDEATASID-YATDALIQKTIREEFTNSTILTIAH 182
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 32.5 bits (74), Expect = 0.046
Identities = 16/56 (28%), Positives = 33/56 (58%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCII 115
+++ G+ +++ +A+ + + P LLI DEPT ++P I++ L L+ T I+
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTIL 213
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 32.1 bits (74), Expect = 0.047
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 46 SLLNGLPDPNSLCG-QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDP----LISDTIW 100
SL GL G +S GQ++ + +A ++ +L+LDE TA +DP LI TI
Sbjct: 124 SLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR 183
Query: 101 QHLRTLSATGVTCIITTHYIE 121
+ + T + H ++
Sbjct: 184 EAFK-----DCTVLTIAHRLD 199
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 32.0 bits (73), Expect = 0.051
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 81 LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
+ ILDEP A L P + LR L+ +G II TH
Sbjct: 149 IYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATH 186
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 31.9 bits (72), Expect = 0.058
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
+SGGQ++R +A+ + +++LDEPT LD
Sbjct: 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 32.0 bits (73), Expect = 0.061
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
SGG+ +R+++A + + +LDEP+A LD
Sbjct: 117 SGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 31.8 bits (73), Expect = 0.070
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 4/39 (10%)
Query: 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
P SL SGG+++R+++ ++ +P LL++DEP A LD
Sbjct: 126 PGSL----SGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
>gnl|CDD|237536 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.
Length = 811
Score = 31.8 bits (73), Expect = 0.088
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 68 RISVAVTMMHSPLLLILDEP-TAGLDPLISDTIWQHLRTLSATG 110
R+ V T M+ LL D+P T GL+P + D HLR L+ G
Sbjct: 197 RVRVPETPMYLDALLA-DQPLTGGLEPRLGD---AHLRVLTIRG 236
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 31.4 bits (72), Expect = 0.10
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 44 YISLLN-GLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH 102
+I LN P L +SGG Q++ + + +++LDEPT G+D I+
Sbjct: 379 FIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNV 438
Query: 103 LRTLSATGVTCII 115
+ L+A GV +
Sbjct: 439 IYELAAQGVAVLF 451
Score = 29.5 bits (67), Expect = 0.49
Identities = 18/70 (25%), Positives = 38/70 (54%)
Query: 53 DPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
DP++ +S GQ++ + +A + + ++ DEPT+ L + +++ +R L A G
Sbjct: 133 DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRV 192
Query: 113 CIITTHYIEE 122
+ +H +EE
Sbjct: 193 ILYVSHRMEE 202
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 31.1 bits (70), Expect = 0.14
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGV----TCIIT 116
+SGGQ++R+S+A + + + + D+P + +D + I++H+ + GV T I+
Sbjct: 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV--IGPEGVLKNKTRILV 818
Query: 117 THYI 120
TH I
Sbjct: 819 THGI 822
Score = 28.4 bits (63), Expect = 1.2
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRT 105
+S GQ++ + +A ++ +L+LDE TA +D + I +RT
Sbjct: 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRT 1466
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 29.5 bits (67), Expect = 0.16
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 14/55 (25%)
Query: 52 PDPNSLCGQVSGGQQRRISVAVTM-------------MHSPLLLILDEPTAGLDP 93
+ + G +SGG+ +++ + + +P L+ LDE A LD
Sbjct: 14 RELSRDSGTLSGGE-KQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDE 67
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 30.2 bits (69), Expect = 0.19
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
S G + R++ A+ P +L++DE A D + + LR L G T I+ +H
Sbjct: 144 SSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSH 200
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 30.7 bits (69), Expect = 0.20
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
+SGGQ++R+S+A + + + I D+P + LD ++ ++ G T ++ T+
Sbjct: 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTN 798
Score = 28.8 bits (64), Expect = 0.87
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGL----DPLISDTIWQHLRT 105
S GQ++ +S+A ++ +L+LDE TA + D LI TI + ++
Sbjct: 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS 1420
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 30.2 bits (68), Expect = 0.28
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITT 117
++S GQ+ R +A + P +L++DE A LD L + + + + L+ G+T I+ T
Sbjct: 506 SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVT 565
Query: 118 H 118
H
Sbjct: 566 H 566
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 30.3 bits (69), Expect = 0.29
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 62 SGGQQRRISVA---VTMMHSPL-LLILDEPTAGLDPLISDTIWQHLRTLSATG-VTCIIT 116
SGG+ RI +A + LI DE G+ ++ + + LR LS V C+
Sbjct: 433 SGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCV-- 490
Query: 117 THYIEEARHAHK 128
TH + A A
Sbjct: 491 THLPQVAAMADT 502
>gnl|CDD|227274 COG4938, COG4938, Uncharacterized conserved protein [Function
unknown].
Length = 374
Score = 30.3 bits (68), Expect = 0.29
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 81 LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
L+I++ P A L P + L L+A GV ++ TH
Sbjct: 263 LIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETH 300
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 30.2 bits (69), Expect = 0.31
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 67 RRISVAVTMMHSPLLLILDEPTAGLDPL------ISDTIWQHLRTLSATGVTCIITTHYI 120
I + L++ DE AG DP IS I L L G I TTHY
Sbjct: 396 TNIVRILEKADKNSLVLFDELGAGTDPDEGAALAIS--I---LEYLRKRGAKIIATTHYK 450
Query: 121 E 121
E
Sbjct: 451 E 451
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 29.7 bits (67), Expect = 0.43
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTA----GLDPLISDTIWQHLRT 105
S GQ++ +S+A ++ +L+LDE TA D LI TI + ++
Sbjct: 1376 SVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1423
Score = 28.9 bits (65), Expect = 0.76
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
+SGGQ++R+S+A + + + I D+P + LD
Sbjct: 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 29.7 bits (67), Expect = 0.48
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYI 120
+SGGQ+ R+S+A + + + +LD+P + LD + + + + + G T ++ TH +
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842
Query: 121 EEARHAHKV 129
A V
Sbjct: 843 HVVPRADYV 851
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 28.5 bits (64), Expect = 0.82
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
Q+SGG+ +R+++A + DEP++ LD
Sbjct: 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 28.9 bits (64), Expect = 0.95
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 59 GQVSGGQQR------RISVAVTMMHSPLLLILDEPTAGLD 92
G+ S GQ+ R+++A T + ++ LDEPT LD
Sbjct: 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLD 1237
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 28.8 bits (64), Expect = 0.98
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH-LRTLSATGVTCIITTH 118
+S GQQ+R+++ + +L+ DE A DP ++ L L G T II +H
Sbjct: 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISH 529
>gnl|CDD|153097 cd00657, Ferritin_like, Ferritin-like superfamily of
diiron-containing four-helix-bundle proteins.
Ferritin-like, diiron-carboxylate proteins participate
in a range of functions including iron regulation,
mono-oxygenation, and reactive radical production. These
proteins are characterized by the fact that they
catalyze dioxygen-dependent oxidation-hydroxylation
reactions within diiron centers; one exception is
manganese catalase, which catalyzes peroxide-dependent
oxidation-reduction within a dimanganese center.
Diiron-carboxylate proteins are further characterized by
the presence of duplicate metal ligands, glutamates and
histidines (ExxH) and two additional glutamates within a
four-helix bundle. Outside of these conserved residues
there is little obvious homology. Members include
bacterioferritin, ferritin, rubrerythrin, aromatic and
alkene monooxygenase hydroxylases (AAMH), ribonucleotide
reductase R2 (RNRR2), acyl-ACP-desaturases
(Acyl_ACP_Desat), manganese (Mn) catalases,
demethoxyubiquinone hydroxylases (DMQH), DNA protecting
proteins (DPS), and ubiquinol oxidases (AOX), and the
aerobic cyclase system, Fe-containing subunit (ACSF).
Length = 130
Score = 27.8 bits (62), Expect = 1.00
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 100 WQHLRTLSATGVTCIITTHYIEEARHAHKV 129
Q + + EE RHA +
Sbjct: 18 GQLAARAPDPDLKDELLEIADEERRHADAL 47
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 27.8 bits (62), Expect = 1.6
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH-LRTLSATGVTCIITTH 118
++S GQ++R+++ + ++ +L+LDE A DP +Q L L G T +H
Sbjct: 448 KLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 27.7 bits (63), Expect = 1.8
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 17/75 (22%)
Query: 62 SGGQQRRISVAVTMMHSPL---LLILDEPTAGL-----DPLISDTIWQHLRTLSATGVTC 113
SGG+ +RI +A T + S L L +LDEP+ GL D LI +T+ +HLR L G T
Sbjct: 491 SGGEAQRIRLA-TQIGSGLTGVLYVLDEPSIGLHQRDNDRLI-ETL-KHLRDL---GNTL 544
Query: 114 IITTH---YIEEARH 125
I+ H I A +
Sbjct: 545 IVVEHDEDTIRAADY 559
Score = 26.2 bits (59), Expect = 6.5
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 81 LLILDEPTAGL 91
L ILDEPT GL
Sbjct: 854 LYILDEPTTGL 864
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 27.5 bits (61), Expect = 2.3
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 45 ISLLNGLPDPNSLCGQ-VSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
+ ++ LPD + ++ GQ++R+++A ++ P ++I DE A LD
Sbjct: 133 LRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLD 181
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 27.5 bits (61), Expect = 2.3
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 61 VSGGQQRRISVAVTM---------MHSPLLLILDEPTAGLDPLISDTIWQHLRTLS---A 108
+SGG+ R+ A + P L+LDEPTA LD + +R L+
Sbjct: 146 LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN 205
Query: 109 TGVTCIITTHYIE-EARHAHKV 129
GV I+ H ARHA ++
Sbjct: 206 LGVLAIV--HDPNLAARHADRI 225
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 27.2 bits (61), Expect = 2.8
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 62 SGGQQRRISVAVTMMH---SPLLLILDEPTAGL 91
SGG+ +RI +A + L ILDEPT GL
Sbjct: 171 SGGEAQRIKLAKELSKRSTGKTLYILDEPTTGL 203
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding domain
shows the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 276
Score = 26.8 bits (60), Expect = 3.2
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 53 DPNSLCGQVSGGQQRRISVA---VTMMHSPLL-LILDEPTAGLDPLISDTIWQHLRTLSA 108
L SGG+ R+ +A + + LI DE G+ ++ + + L+ LS
Sbjct: 163 PLKPLAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR 222
Query: 109 TG-VTCIITTH 118
+ V CI TH
Sbjct: 223 SHQVLCI--TH 231
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 26.9 bits (60), Expect = 3.4
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH-LRTLSATGVTCIITTH 118
++S GQ++R+++ + + +L+LDE A DP +Q L L G T +H
Sbjct: 449 KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISH 508
Query: 119 ---YIEEA 123
Y A
Sbjct: 509 DDHYFIHA 516
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 27.1 bits (60), Expect = 3.4
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 62 SGGQQRRISVAVTMMHSPLL--------LILDEPTAGLDPLISDTIWQHLRTLSATGVTC 113
SGG+ +S+A+ + S L+ L LDE LD DT L L+A+G T
Sbjct: 951 SGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTI 1010
Query: 114 IITTH 118
+ +H
Sbjct: 1011 GVISH 1015
>gnl|CDD|214623 smart00330, PIPKc, Phosphatidylinositol phosphate kinases.
Length = 342
Score = 27.0 bits (60), Expect = 3.5
Identities = 7/29 (24%), Positives = 8/29 (27%)
Query: 3 YQPPEKFQVVSVGLYFRWKGSHLRELFHP 31
P Y +LRELF
Sbjct: 21 LTPSHGSADFKFKDYCPEVFRNLRELFGI 49
>gnl|CDD|227578 COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-kinase [Signal
transduction mechanisms].
Length = 612
Score = 26.8 bits (59), Expect = 4.1
Identities = 12/44 (27%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 2 VYQPPEKFQVVSVGLYFRWKGSHLRELFH--PTTVPIPSVYFPW 43
Q E S YF LR L V + S Y W
Sbjct: 326 NEQFEEGLYEFSCKDYFPEVFRELRALCGCDEALVSLLSRYILW 369
>gnl|CDD|235811 PRK06474, PRK06474, hypothetical protein; Provisional.
Length = 178
Score = 26.3 bits (58), Expect = 5.0
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 66 QRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
R+ + +M + L E L + T+++HL+T+ +G+ ++
Sbjct: 11 PVRMKICQVLMRNKEGLTPLELVKILKDVPQATLYRHLQTMVDSGILHVVKEK 63
>gnl|CDD|223327 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 843
Score = 26.5 bits (59), Expect = 5.5
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 81 LLILDE---PTAGLDPL-ISDTIWQHLRTLSATGVTCIITTHYIE 121
L+ILDE T+ D L I+ + ++L G + THY E
Sbjct: 689 LVILDEIGRGTSTYDGLAIAWAVLEYL--HEKIGCRTLFATHYHE 731
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 26.3 bits (58), Expect = 5.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 64 GQQRRISVAVTMMHSPLLLILDEPTAGLD 92
GQ++R+ +A ++ P ++I DE A LD
Sbjct: 153 GQKQRLGLARALILRPKVIIADEALASLD 181
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating P-type
ATPase found in a limited number of bacterial species
and best described in Salmonella typhimurium, which
contains two isoforms. These transporters are active in
low external Mg2+ concentrations and pump the ion into
the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 26.4 bits (58), Expect = 6.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 34 VPIPSVYFPWYISLLNG 50
V +P YFPW I++L G
Sbjct: 832 VSLPLSYFPWLIAILVG 848
>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional.
Length = 884
Score = 26.1 bits (58), Expect = 7.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 20 WKGSHLRELFHPT 32
WK S LREL+ T
Sbjct: 603 WKQSLLRELYFAT 615
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 25.6 bits (57), Expect = 8.5
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
++SGGQ++R+++ ++ P + + DEP + LD
Sbjct: 134 ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|178121 PLN02505, PLN02505, omega-6 fatty acid desaturase.
Length = 381
Score = 25.4 bits (56), Expect = 9.9
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 11/42 (26%)
Query: 17 YFRWKGSHLRELFHPTT---------VPIPSVYFPWYISLLN 49
YF WK SH R H T VP PWY LN
Sbjct: 134 YFSWKYSHRRH--HSNTGSLERDEVFVPKKKSALPWYSKYLN 173
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.447
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,935,685
Number of extensions: 610721
Number of successful extensions: 949
Number of sequences better than 10.0: 1
Number of HSP's gapped: 885
Number of HSP's successfully gapped: 401
Length of query: 131
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 45
Effective length of database: 7,123,158
Effective search space: 320542110
Effective search space used: 320542110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.6 bits)