RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4761
(131 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 95.7 bits (239), Expect = 2e-25
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114
S G R++ +A +M +P L ILDEPT+GLD L + + + L+ S G+T +
Sbjct: 141 KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200
Query: 115 ITTHYIEEA 123
+++H + E
Sbjct: 201 VSSHNMLEV 209
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 88.7 bits (221), Expect = 4e-23
Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 50 GLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA- 108
+ D G++S G RR+ +A T++ + + +LD+P +D + + + +
Sbjct: 123 EVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 182
Query: 109 TGVTCIITTHYIEEA 123
G+ I + +
Sbjct: 183 KGIVIISSREELSYC 197
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 81.9 bits (203), Expect = 4e-20
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTC--IIT 116
G +S G+++R+ +A +M P +LILDEP AGLD + +++ L +LS + T I
Sbjct: 160 GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYV 219
Query: 117 THYIEEA 123
TH+IEE
Sbjct: 220 THFIEEI 226
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 77.2 bits (191), Expect = 2e-18
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 54 PNSLCGQVSGGQQRRISVA-VTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
P L SGG++RR+++A V + P +LILDEP GLD + + + G T
Sbjct: 136 PFFL----SGGEKRRVAIASVIVHE-PDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 190
Query: 113 CIITTHYIEE-ARHAHKV 129
I+ +H IE H +V
Sbjct: 191 VILISHDIETVINHVDRV 208
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 71.8 bits (177), Expect = 2e-16
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 62 SGGQQRRISVA-VTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTHY 119
S GQ++R+++A V +M P +LILDEPTAGLDP+ I + L + G+T II TH
Sbjct: 145 SFGQKKRVAIAGVLVME-PKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203
Query: 120 IEE-ARHAHKV 129
I+ + V
Sbjct: 204 IDIVPLYCDNV 214
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 70.1 bits (172), Expect = 9e-16
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++S GQ + ++ + P ++ LDEP +D I ++++ G I+ TH
Sbjct: 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTHE 184
Query: 120 IEEA 123
++
Sbjct: 185 LDML 188
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 65.8 bits (161), Expect = 8e-14
Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVT 112
N L SGG+ +++ +A T+ L +LD+P++ LD + + ++ ++
Sbjct: 383 VNDL----SGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAV 438
Query: 113 CIITTHYIEEARH-AHKV 129
I H + + A ++
Sbjct: 439 TFIIDHDLSIHDYIADRI 456
Score = 60.8 bits (148), Expect = 4e-12
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 48 LNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS 107
+ L + ++ +SGG +R+ VA +++ + I D+P++ LD + + +R L
Sbjct: 128 MTNLWNKDA--NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL- 184
Query: 108 ATGVTCIITTH 118
I+ H
Sbjct: 185 LKNKYVIVVDH 195
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 63.3 bits (155), Expect = 2e-13
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
++SGG+Q+R+++A + + P+LL DEPT LD + + ++ G + ++ TH
Sbjct: 139 YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH 198
Query: 119 YIEEARHAHKV 129
E A H+
Sbjct: 199 ERELAELTHRT 209
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 62.7 bits (153), Expect = 8e-13
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 50 GLPDPNSLCG----QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRT 105
+ ++ ++SGG+ +R ++ ++ + + + DEP++ LD Q +R+
Sbjct: 207 KILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS 266
Query: 106 LSATGVTCIITTH 118
L A I H
Sbjct: 267 LLAPTKYVICVEH 279
Score = 62.4 bits (152), Expect = 1e-12
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVT 112
L SGG+ +R+++ + + + ++DEP+A LD + +R T
Sbjct: 465 VQHL----SGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT 520
Query: 113 CIITTHYIEEARH-AHKV 129
I H A + A KV
Sbjct: 521 AFIVEHDFIMATYLADKV 538
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 60.6 bits (148), Expect = 2e-12
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 50 GLPD------PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHL 103
L + PN Q+SGGQQ+R+++A + ++P +++ D+PT LD + I Q L
Sbjct: 133 ELEERFANHKPN----QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLL 188
Query: 104 RTLSA-TGVTCIITTHYIEEARHAHKV 129
+ L+ G T ++ TH I AR ++
Sbjct: 189 KKLNEEDGKTVVVVTHDINVARFGERI 215
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 58.7 bits (143), Expect = 1e-11
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIIT 116
+SGGQ++ I +A + L++LDEPT+ LD D + L L+ + +T + T
Sbjct: 126 FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFT 185
Query: 117 THYIEEA-RHAHKV 129
TH + A+K
Sbjct: 186 THQPNQVVAIANKT 199
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 58.5 bits (142), Expect = 3e-11
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
Q+SGG+ +R+++A ++ DEP++ LD + + +R L+ G ++ H
Sbjct: 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 286
Score = 58.5 bits (142), Expect = 3e-11
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVT 112
L SGG+ +R+++A T++ + +LDEP+A LD + + +R L T
Sbjct: 469 VEDL----SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 524
Query: 113 CIITTH 118
++ H
Sbjct: 525 ALVVEH 530
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 56.7 bits (138), Expect = 7e-11
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT-C 113
+ G++SGGQ + + + +M +P ++++DEP AG+ P ++ I+ H+ L A G+T
Sbjct: 148 DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFL 207
Query: 114 II 115
II
Sbjct: 208 II 209
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 57.0 bits (137), Expect = 9e-11
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 58 CGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIW--QHLRTLSATGVTCII 115
+SGG + ++++A ++ + +L+LDEPT LD + W +L T G+T I
Sbjct: 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD--TVNVAWLVNYLNT---CGITSIT 600
Query: 116 TTH 118
+H
Sbjct: 601 ISH 603
Score = 50.4 bits (120), Expect = 2e-08
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 48 LNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
L+ +S +SGGQ+ ++ +A P L++LDEPT LD
Sbjct: 889 LDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 56.5 bits (137), Expect = 1e-10
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTH 118
+SGG+ +R+++A ++ + DEP++ LD + +R LS G + ++ H
Sbjct: 158 HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Score = 55.4 bits (134), Expect = 4e-10
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 54 PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVT 112
N L SGG+ +R+++A T++ + +LDEP+A LD + + +R L T
Sbjct: 399 VNEL----SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 454
Query: 113 CIITTHYIEEARH-AHKV 129
++ H + + + ++
Sbjct: 455 ALVVEHDVLMIDYVSDRL 472
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 55.5 bits (135), Expect = 2e-10
Identities = 18/58 (31%), Positives = 37/58 (63%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
L G +SGG+Q+ +++ +M P LL++DEP+ GL P++ +++ ++ ++ G T
Sbjct: 134 KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTT 191
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 52.4 bits (125), Expect = 4e-09
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 62 SGGQQRRISVAV------TMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCII 115
SGG++ + +A + LLILDEPT LD + + I+
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309
Query: 116 TTHYIEEARHAHKV 129
+H E A V
Sbjct: 310 VSHDEELKDAADHV 323
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 51.4 bits (124), Expect = 5e-09
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITT 117
++SGG+++R+++A ++ P LL+LDEP + +D + + LR + V + T
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 118 HYIEEA 123
H + EA
Sbjct: 185 HDLIEA 190
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 51.0 bits (123), Expect = 7e-09
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDP-LISDTIWQHLRTLSATGVTCIITT 117
+SGGQQ+R+S+A + P +L+ DEPT+ LDP L+ + + + ++ L+ G T ++ T
Sbjct: 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL-RIMQQLAEEGKTMVVVT 210
Query: 118 HYIEEARH-AHKV 129
H + ARH + V
Sbjct: 211 HEMGFARHVSSHV 223
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 50.3 bits (121), Expect = 2e-08
Identities = 22/73 (30%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDP-LISDTIWQHLRTLSATGVTCIITT 117
+SGGQ +R+++A + P +++ DEPT+ LDP ++ + + ++ L+ G+T ++ T
Sbjct: 158 DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVL-SVMKQLANEGMTMVVVT 216
Query: 118 HYIEEARH-AHKV 129
H + AR +V
Sbjct: 217 HEMGFAREVGDRV 229
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 48.7 bits (117), Expect = 5e-08
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 60 QVSGGQQRRISVA-------VTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
Q+SGG+ +R+ +A + LL+LDEP LD + + L LS G+
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLA 185
Query: 113 CIITTHYIEEA-RHAHKV 129
++++H + RHAH+
Sbjct: 186 IVMSSHDLNHTLRHAHRA 203
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 48.9 bits (117), Expect = 6e-08
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH-LRTLSATGVTCIITTH 118
Q+SGGQ++RI++A ++ +P +L+LDE T+ LD S+ + Q L G T I+ H
Sbjct: 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDT-ESEAVVQAALDKARE-GRTTIVIAH 583
Query: 119 YIEEARHAHKV 129
+ R+A +
Sbjct: 584 RLSTVRNADVI 594
Score = 47.3 bits (113), Expect = 2e-07
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 50 GLPDP-NSLCG----QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH-L 103
LPD N+ G Q+SGGQ++RI++A ++ P +L+LDE T+ LD S+ + Q L
Sbjct: 1156 SLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT-ESEKVVQEAL 1214
Query: 104 RTLSATGVTCIITTHYIEEARHAHKV 129
G TCI+ H + ++A +
Sbjct: 1215 DKARE-GRTCIVIAHRLSTIQNADLI 1239
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 48.3 bits (116), Expect = 8e-08
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
++SGGQQ+R ++A + P L++LDEP + LD + I + + A G + + +H
Sbjct: 138 ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSH 197
Query: 119 YIEEA 123
EEA
Sbjct: 198 DREEA 202
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 47.3 bits (113), Expect = 2e-07
Identities = 20/72 (27%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSAT-GVTCIITTH 118
+SGGQ++R+++A + +P +L+ D+ T+ LDP + +I + L+ ++ G+T ++ TH
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222
Query: 119 YIEEARH-AHKV 129
++ + V
Sbjct: 223 EMDVVKRICDCV 234
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 46.8 bits (112), Expect = 3e-07
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
+SGG+Q+R+++A ++ +P +L+LDEP + LDP + + L L +T + TH
Sbjct: 127 TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH 186
Query: 119 YIEEA 123
EA
Sbjct: 187 DQTEA 191
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 45.3 bits (108), Expect = 9e-07
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTCIITTH 118
++SGGQQ+R+++A + P +L+ DEP A +D I + +R + GVT + TH
Sbjct: 145 ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH 204
Query: 119 YIEEA 123
EEA
Sbjct: 205 DQEEA 209
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 44.4 bits (106), Expect = 1e-06
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
+SGGQ++RI++A ++++P +LI DE T+ LD I +++ + G T II H
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHR 203
Query: 120 IEEARHAHKV 129
+ ++A ++
Sbjct: 204 LSTVKNADRI 213
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 42.8 bits (101), Expect = 3e-06
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 59 GQVSGGQQRRISVA------VTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
+SGG++ + +A + + LLILDEPT LD + +
Sbjct: 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ 115
Query: 113 CIITTHYIEEARHA 126
I+ +H E A
Sbjct: 116 VILVSHDEELKDAA 129
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 43.7 bits (104), Expect = 3e-06
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDT---IWQHLRTLSATGVTCIITTH 118
SGG+++R+++A T++ +P +++LDE T+ LD + I L + A T I+ H
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALD---TSNERAIQASLAKVCA-NRTTIVVAH 247
Query: 119 YIEEARHAHKV 129
+ +A ++
Sbjct: 248 RLSTVVNADQI 258
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 43.3 bits (103), Expect = 4e-06
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDT---IWQHLRTLSATGVTCIIT 116
++SGG+++RI++A ++ P ++I DE T+ LD S T + + L T II
Sbjct: 155 KLSGGERQRIAIARCLLKDPKIVIFDEATSSLD---SKTEYLFQKAVEDLRK-NRTLIII 210
Query: 117 THYIEEARHAHK 128
H + A
Sbjct: 211 AHRLSTISSAES 222
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 5e-06
Identities = 32/139 (23%), Positives = 41/139 (29%), Gaps = 63/139 (45%)
Query: 44 YISLLNGLPD-------PNSLCGQV---------SGGQQRRI-----SVAVTMM------ 76
ISL+NG P SL G SG Q RI + +
Sbjct: 367 EISLVNG-AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 77 --HSPLL------LILDEPTAGLD--------PLISDTI-WQHLRTLSATG----VTCII 115
HS LL + D + P+ DT LR LS + V CII
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY-DTFDGSDLRVLSGSISERIVDCII 484
Query: 116 T-------------THYIE 121
TH ++
Sbjct: 485 RLPVKWETTTQFKATHILD 503
Score = 29.2 bits (65), Expect = 0.38
Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 28/129 (21%)
Query: 2 VYQPPEKFQVVSVGLYFRWKGSHLRELFHPTTVPIPSVYFPWYISLLNGLPDPNSLCGQV 61
Y VG ++ L EL T F +++L L +P++
Sbjct: 179 TYHV-------LVGDLIKFSAETLSEL--IRTTLDAEKVFTQGLNILEWLENPSN----- 224
Query: 62 SGGQQRRISVAVTMMHSPLLLILD----EPTA---GLDPLISDTIWQHLRTLSATGVTCI 114
+ + +S+ ++ PL+ ++ TA G P + +L+ + +
Sbjct: 225 TPDKDYLLSIPISC---PLIGVIQLAHYVVTAKLLGFTP---GELRSYLKGATGHS-QGL 277
Query: 115 ITTHYIEEA 123
+T I E
Sbjct: 278 VTAVAIAET 286
Score = 25.4 bits (55), Expect = 8.1
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 28/85 (32%)
Query: 14 VGLYFRWKGSHLRELFHPTTVPIPSVYFPWYISLLNGLPDPNSLCGQVSGGQQRRISVAV 73
+ + F + G E + T++P PS+ SL N P
Sbjct: 300 ITVLF-FIGVRCYEAYPNTSLP-PSIL---EDSLENNEGVP------------------- 335
Query: 74 TMMHSPLLLILDEPTAGLDPLISDT 98
SP+L I + + ++ T
Sbjct: 336 ----SPMLSISNLTQEQVQDYVNKT 356
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 42.8 bits (102), Expect = 5e-06
Identities = 15/33 (45%), Positives = 26/33 (78%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
++SGGQ++R+++A + +P +L+LDE TA LD
Sbjct: 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLD 171
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 42.1 bits (100), Expect = 1e-05
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHL--RTLSATGVTCIIT 116
Q+SGGQ++ +++A ++ P LLILD T+ LD + Q L + T ++
Sbjct: 155 NQLSGGQRQAVALARALIRKPRLLILDNATSALDAG-NQLRVQRLLYESPEWASRTVLLI 213
Query: 117 THYIEEARHAHKV 129
T + A AH +
Sbjct: 214 TQQLSLAERAHHI 226
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 40.6 bits (96), Expect = 4e-05
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
SGGQ++R+S+A +++P +LILDE T+ LD
Sbjct: 479 SGGQKQRLSIARIFLNNPPILILDEATSALD 509
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 40.6 bits (95), Expect = 5e-05
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 60 QVSGGQQRRISVAV------TMMHSPL-LLILDEPTAGLDPLISDTIWQHLRTLSATGVT 112
+SGG+Q +++++ ++ + + +ILDEPT LD + + R + +
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIP-Q 338
Query: 113 CIITTH 118
II TH
Sbjct: 339 MIIITH 344
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 38.7 bits (91), Expect = 2e-04
Identities = 15/33 (45%), Positives = 26/33 (78%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
+SGGQ++RI++A ++ +P +L+LDE T+ LD
Sbjct: 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALD 515
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 38.7 bits (91), Expect = 2e-04
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
SGGQ++RI++A ++ +LILDE T+ LD
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALD 512
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 38.3 bits (90), Expect = 3e-04
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
SGGQ++R+++A ++ +LILDE T+ LD
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALD 512
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 37.8 bits (88), Expect = 5e-04
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDP----LISDTIWQHLRTLSATGVTCIITT 117
S G ++ + +A +++ +L+LDEP+A LDP +I T+ Q T I+
Sbjct: 157 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFA-----DCTVILCE 211
Query: 118 HYIE 121
IE
Sbjct: 212 ARIE 215
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 35.2 bits (82), Expect = 0.003
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 61 VSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISD-TIWQHLRTLSATGVTCIITTHY 119
SGGQ++R+S+A ++ P +LILD+ T+ +D I++ I L+ + G T I T
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVD-PITEKRILDGLKRYTK-GCTTFIITQK 537
Query: 120 IEEARHAHKV 129
I A A K+
Sbjct: 538 IPTALLADKI 547
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial;
alpha & beta protein, PLP-dependent transferase,
aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo
sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Length = 425
Score = 33.0 bits (76), Expect = 0.017
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 19 RWKGSHLRELFHPTTVPIPSVYFPWYISLLNGLPDPNSL 57
S +R + + S+ ISL GLP+PN
Sbjct: 13 ARNPSPIRTMTDILSRGPKSM-----ISLAGGLPNPNMF 46
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 32.6 bits (75), Expect = 0.020
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
++SG QQ+R+++A ++ P LL+LDEP + LD
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 32.5 bits (75), Expect = 0.024
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
+S GQ++ +++ + +P +LILDE T+ +D
Sbjct: 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 30.9 bits (71), Expect = 0.11
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 14/73 (19%)
Query: 62 SGGQQRRISVAVTMMHSPL---LLILDEPTAGL-----DPLISDTIWQHLRTLSATGVTC 113
S G+ +R+ +A T ++S L + +LDEP+AGL + L+ + ++L+ G +
Sbjct: 381 SPGELQRLRLA-TQLYSNLFGVVYVLDEPSAGLHPADTEALL-SAL-ENLKRG---GNSL 434
Query: 114 IITTHYIEEARHA 126
+ H ++ R A
Sbjct: 435 FVVEHDLDVIRRA 447
Score = 25.9 bits (58), Expect = 4.3
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 83 ILDEPTAGL 91
+LDEPT GL
Sbjct: 756 VLDEPTTGL 764
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.11
Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 36/96 (37%)
Query: 46 SLLNGLPDPNSLCGQVSGGQQRRISVAVT---------------MMHSPL---LLILDEP 87
++L L L Q+ R + + P LL+L
Sbjct: 197 TVLEML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN- 252
Query: 88 TAGLDPLISDTIWQHLRTLSATGVTC--IITTHYIE 121
+ + + +A ++C ++TT + +
Sbjct: 253 -----------VQ-NAKAWNAFNLSCKILLTTRFKQ 276
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 30.6 bits (70), Expect = 0.12
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD----PLISDTIWQHLRTLSATGVTCIITT 117
SGG+++R + + P L ILDE +GLD +++D + +L + II T
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV----NSLRDGKRSFIIVT 221
Query: 118 HY 119
HY
Sbjct: 222 HY 223
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 30.2 bits (69), Expect = 0.13
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLD----PLISDTIWQHLRTLSATGVTCIITT 117
SGG+++R + ++ P +LDE +GLD +++ + + ++ T
Sbjct: 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV----NAMRGPNFGALVIT 200
Query: 118 HY 119
HY
Sbjct: 201 HY 202
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 29.5 bits (67), Expect = 0.28
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
Q+SGGQQ+R+++A ++ P +L+LDEP + LD
Sbjct: 132 WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate
aminotransferase, archaea, thermococcus L transferase;
HET: PMP; 2.30A {Thermococcus litoralis}
Length = 407
Score = 29.5 bits (67), Expect = 0.31
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 21 KGSHLRELFHPTTVPIPSVYFPWYISLLNGLPDPNSL 57
KGS L ++ + ISL G PDP +
Sbjct: 15 KGSALADVMKKASELQKKG--VKLISLAAGDPDPELI 49
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 28.7 bits (64), Expect = 0.51
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 62 SGGQQRRISVAV-----TMMHSPL-LLILDEPTAGLDPLISDTIWQHLRTLSATGVTCII 115
SGG++ IS+++ + L +DE + LD + I L+ L +
Sbjct: 281 SGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVF 340
Query: 116 TTHYIEE 122
TH E
Sbjct: 341 ITH-DRE 346
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 28.6 bits (65), Expect = 0.68
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 14/65 (21%)
Query: 62 SGGQQRRISVAVTMMHSPL---LLILDEPTAGL-----DPLISDTIWQHLRTLSATGVTC 113
SGG+ +RI +A T + S L + +LDEPT GL + LI T+ + LR L G T
Sbjct: 466 SGGESQRIRLA-TQIGSGLTGVIYVLDEPTIGLHPRDTERLI-KTL-KKLRDL---GNTV 519
Query: 114 IITTH 118
I+ H
Sbjct: 520 IVVEH 524
Score = 25.9 bits (58), Expect = 5.1
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 83 ILDEPTAGL 91
ILDEPT GL
Sbjct: 831 ILDEPTVGL 839
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 27.9 bits (63), Expect = 0.91
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
Q+SGGQQ+R+++A ++ P +L+ DEP + LD
Sbjct: 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 28.0 bits (63), Expect = 0.92
Identities = 15/34 (44%), Positives = 26/34 (76%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
Q+SGGQ++R++VA ++ P +L++DEP + LD
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 27.5 bits (62), Expect = 1.3
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDP-----LISDTIWQHLRTLSATGVTCIIT 116
SGGQ+ RIS+A + L +LD P LD + + + + T I+
Sbjct: 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-----NKTRILV 186
Query: 117 THYIEEARHAHKV 129
T +E + A K+
Sbjct: 187 TSKMEHLKKADKI 199
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 27.5 bits (62), Expect = 1.4
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 14/65 (21%)
Query: 62 SGGQQRRISVAVTMMHSPL---LLILDEPTAGL-----DPLISDTIWQHLRTLSATGVTC 113
SGG+ +RI +A T + S L L +LDEP+ GL D LI T+ + +R L G T
Sbjct: 204 SGGEAQRIRLA-TQIGSRLTGVLYVLDEPSIGLHQRDNDRLI-ATL-KSMRDL---GNTL 257
Query: 114 IITTH 118
I+ H
Sbjct: 258 IVVEH 262
Score = 26.0 bits (58), Expect = 4.2
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 83 ILDEPTAGL 91
ILDEPT GL
Sbjct: 569 ILDEPTTGL 577
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 27.3 bits (61), Expect = 1.6
Identities = 21/98 (21%), Positives = 29/98 (29%), Gaps = 11/98 (11%)
Query: 24 HLRELFHPTTVPIPSVYFPWYISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLI 83
+L + T+ I W I S G R+I +
Sbjct: 512 YLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKA------- 564
Query: 84 LDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIE 121
+P GL T W H TL + GV I Y +
Sbjct: 565 -SKPGQGLGK---TTGWIHRTTLLSRGVKMIPGVSYQK 598
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 27.3 bits (61), Expect = 1.7
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH--LRTLSATGVTCIITTHY 119
SGGQ+ RIS+A + L +LD P LD L I++ + ++ T I+ T
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA--NKTRILVTSK 218
Query: 120 IEEARHAHKV 129
+E + A K+
Sbjct: 219 MEHLKKADKI 228
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 26.8 bits (60), Expect = 2.0
Identities = 11/34 (32%), Positives = 24/34 (70%)
Query: 59 GQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLD 92
++SGGQ++R+++ ++ P + ++DEP + LD
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH;
2'O-methyltransferase, knot, montreal- kingston
bacterial structural genomics initiative, BSGI; 2.5A
{Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Length = 253
Score = 26.8 bits (60), Expect = 2.3
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 16/43 (37%)
Query: 78 SPLLLILDEPTAGLDPLISDTIWQH-----LRTLSATGVTCII 115
P LLILD T DP H LR+ A GV +I
Sbjct: 104 QPFLLILDGVT---DP--------HNLGACLRSADAAGVHAVI 135
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural
genomics/proteomics INIT RSGI, structural genomics; HET:
SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Length = 194
Score = 26.4 bits (59), Expect = 2.7
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 16/42 (38%)
Query: 79 PLLLILDEPTAGLDPLISDTIWQH-----LRTLSATGVTCII 115
L ++L+ P H LRT A GV
Sbjct: 22 DLTVLLENVH---KP--------HNLSAILRTCDAVGVLEAH 52
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 26.7 bits (60), Expect = 2.9
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 14/65 (21%)
Query: 62 SGGQQRRISVAVTMMHSPL---LLILDEPTAGL-----DPLISDTIWQHLRTLSATGVTC 113
SGG+ +RI +A T + S L L +LDEP+ GL D LI T+ + +R L G T
Sbjct: 506 SGGEAQRIRLA-TQIGSRLTGVLYVLDEPSIGLHQRDNDRLI-ATL-KSMRDL---GNTL 559
Query: 114 IITTH 118
I+ H
Sbjct: 560 IVVEH 564
Score = 25.9 bits (58), Expect = 4.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 83 ILDEPTAGL 91
ILDEPT GL
Sbjct: 871 ILDEPTTGL 879
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 26.3 bits (59), Expect = 3.5
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 11/53 (20%)
Query: 62 SGGQQRRISVAVTMMHSPL---LLILDEPTAGL-----DPLISDTIWQHLRTL 106
SGG+ +RI +A T + S L L +LDEP+ GL LI +T+ LR L
Sbjct: 523 SGGEAQRIRLA-TQIGSGLVGVLYVLDEPSIGLHQRDNRRLI-ETL-TRLRDL 572
Score = 26.0 bits (58), Expect = 4.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 83 ILDEPTAGL 91
ILDEPT GL
Sbjct: 889 ILDEPTTGL 897
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching; HET: C6L GOL; 0.95A {Bacillus
thuringiensis serovar kurstakorganism_taxid} PDB:
3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Length = 254
Score = 25.8 bits (57), Expect = 4.1
Identities = 12/71 (16%), Positives = 27/71 (38%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
+ Q + + + ++ + P AG DP ++ + + L+ + I H
Sbjct: 181 FIETEQSGSVLLTIDASYTKENFEDEVPFAGFDPELALSSIKRLKEVVKKEKPIIFFGHD 240
Query: 120 IEEARHAHKVP 130
IE+ + P
Sbjct: 241 IEQEKSCRVFP 251
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 26.0 bits (58), Expect = 4.2
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 62 SGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGV----TCIITT 117
SGGQ++R+S+A + + + + D+P + +D + I++++ + G+ T I+ T
Sbjct: 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV--IGPKGMLKNKTRILVT 186
Query: 118 HYIEEARHAHKV 129
H + +
Sbjct: 187 HSMSYLPQVDVI 198
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 25.0 bits (54), Expect = 9.8
Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 12/68 (17%)
Query: 19 RWKGSHLRE--------LFHPTTVPIPSVYFPWYISLLNGLPDPNSLCGQVSGGQQRRIS 70
W+ S L LF + ++ + L G+ G V R
Sbjct: 83 EWRASDLMTRKSHDNALLFTDMRFDLNTLGITF----LAGMCQAYRSVGIVQEQGNRNFK 138
Query: 71 VAVTMMHS 78
AV M H
Sbjct: 139 TAVIMAHE 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.447
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,118,423
Number of extensions: 114092
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 83
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.3 bits)