RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4761
(131 letters)
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 85.7 bits (212), Expect = 3e-22
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 48 LNGLPDP--NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRT 105
+ L + N Q+SGGQQ+R+++A + ++P +++ D+PT LD + I Q L+
Sbjct: 131 MAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 106 LSA-TGVTCIITTHYIEEARHAHKV 129
L+ G T ++ TH I AR ++
Sbjct: 191 LNEEDGKTVVVVTHDINVARFGERI 215
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 81.5 bits (201), Expect = 1e-20
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 43 WYISLLNGLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQ 101
W SL L + L G +SGG+Q+ +++ +M P LL++DEP+ GL P++ +++
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE 180
Query: 102 HLRTLSATGVTCIITTHYIEEA-RHAHKV 129
++ ++ G T ++ A + AH
Sbjct: 181 VIQKINQEGTTILLVEQNALGALKVAHYG 209
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 79.2 bits (195), Expect = 1e-19
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 44 YISLLNGLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHL 103
+ L + G++SGGQ + + + +M +P ++++DEP AG+ P ++ I+ H+
Sbjct: 134 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 193
Query: 104 RTLSATGVTCIITTHYIEEARH-AHKV 129
L A G+T +I H ++ + +
Sbjct: 194 LELKAKGITFLIIEHRLDIVLNYIDHL 220
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 76.9 bits (189), Expect = 1e-18
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 48 LNGLPD-----PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQH 102
+ + +SGGQ+ RIS+A + L +LD P LD + +++
Sbjct: 141 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 200
Query: 103 LRTLSATGVTCIITTHYIEEARHAHKV 129
T I+ T +E R A K+
Sbjct: 201 CVCKLMANKTRILVTSKMEHLRKADKI 227
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 73.7 bits (181), Expect = 1e-17
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
+SGGQ++RI++A ++ +LILDE T+ LD I L L T ++ H
Sbjct: 152 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHR 210
Query: 120 IEEARHAHKV 129
+ A ++
Sbjct: 211 LSTIEQADEI 220
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 73.3 bits (180), Expect = 2e-17
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++SGGQ++R+S+A +++P +LILDE T+ LD I + L LS T +I H
Sbjct: 154 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHR 212
Query: 120 IEEARHAHKV 129
+ HA K+
Sbjct: 213 LSTITHADKI 222
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 72.5 bits (178), Expect = 3e-17
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 50 GLPDP-NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-S 107
+ + N Q+SGGQ++R++VA ++ P +L++DEP + LD + + ++ L
Sbjct: 125 QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 108 ATGVTCIITTHYIEEARH-AHKV 129
VT I TH EA ++
Sbjct: 185 KLKVTTIYVTHDQVEAMTMGDRI 207
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 72.6 bits (178), Expect = 4e-17
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 50 GLPDP--NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLS 107
G+ + +SGGQQ+R+S+A + P +L+ DEPT+ LDP + + + ++ L+
Sbjct: 137 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA 196
Query: 108 ATGVTCIITTHYIEEARH-AHKV 129
G T ++ TH + ARH + V
Sbjct: 197 EEGKTMVVVTHEMGFARHVSSHV 219
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 69.2 bits (169), Expect = 5e-16
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114
S G R++ +A +M +P L ILDEPT+GLD L + + + L+ S G+T +
Sbjct: 128 KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 187
Query: 115 ITTHYIEEARH 125
+++H + E
Sbjct: 188 VSSHNMLEVEF 198
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 68.4 bits (167), Expect = 1e-15
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
++SGGQ++R+++A + +P +L+LDE TA LD + + L +L G T ++ H
Sbjct: 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHR 197
Query: 120 IEEARHAHKV 129
+ A K+
Sbjct: 198 LSTIVDADKI 207
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 68.0 bits (166), Expect = 1e-15
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 50 GLPDP-NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA 108
GL D +S +SGGQ++R+++A + +P +L+ DE T+ LDP + +I + L+ ++
Sbjct: 129 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188
Query: 109 -TGVTCIITTHYIEEARH-AHKV 129
G+T ++ TH ++ + V
Sbjct: 189 RLGLTILLITHEMDVVKRICDCV 211
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 67.6 bits (165), Expect = 2e-15
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHY 119
+SGGQ++RI++A ++++P +LI DE T+ LD I +++ + G T II H
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHR 197
Query: 120 IEEARHAHKV 129
+ ++A ++
Sbjct: 198 LSTVKNADRI 207
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 64.6 bits (157), Expect = 2e-14
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 50 GLPDPNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA- 108
+ D G++S G RR+ +A T++ + + +LD+P +D + + + +
Sbjct: 115 EVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 174
Query: 109 TGVTCIITTHYIEEARHA---HKV 129
G+ I + + HK
Sbjct: 175 KGIVIISSREELSYCDVNENLHKY 198
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 64.2 bits (156), Expect = 4e-14
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMH-------SPLLLILDEPTAGLDPLISDTIWQHLRTLS 107
Q+SGG+ +R+ +A ++ + LL+LDEP LD + + L L
Sbjct: 120 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC 179
Query: 108 ATGVTCIITTHYIEEA-RHAHKV 129
G+ ++++H + RHAH+
Sbjct: 180 QQGLAIVMSSHDLNHTLRHAHRA 202
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 62.6 bits (152), Expect = 2e-13
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 50 GLPD-PNSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-S 107
GL + N ++SGGQ++R+++ ++ P + ++DEP + LD + + L+ L
Sbjct: 128 GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
Query: 108 ATGVTCIITTHYIEEARH-AHKV 129
GVT I TH EA ++
Sbjct: 188 QLGVTTIYVTHDQVEAMTMGDRI 210
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 60.7 bits (147), Expect = 9e-13
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 60 QVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSA-TGVTCIITTH 118
Q+SGGQ++ +++A ++ P +LILD+ T+ LD + Q L + ++ T
Sbjct: 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQ 210
Query: 119 YIEEARHAHKV 129
++ A +
Sbjct: 211 HLSLVEQADHI 221
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 56.5 bits (136), Expect = 3e-11
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQ-HLRTLSATGVTC 113
+ +SGGQ++R+++ T++ P + +LDEP + LD + + R G T
Sbjct: 125 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 184
Query: 114 IITTHYIEEARH-AHKV 129
I TH EA A K+
Sbjct: 185 IYVTHDQVEAMTLADKI 201
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 55.9 bits (133), Expect = 7e-11
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 6/119 (5%)
Query: 17 YFRWKGSHLRELFHPTTVPIPSVYFPWYISLLNGLPDPNSLCGQVSGGQQRRI------S 70
E + + L +SGG++ + +
Sbjct: 158 IGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLA 217
Query: 71 VAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKV 129
+++ + LLILDEPT LD + + I+ +H E A V
Sbjct: 218 MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 276
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 52.9 bits (125), Expect = 8e-10
Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 6/118 (5%)
Query: 18 FRWKGSHLRELFHPTTVPIPSVYFPWYISLLNGLPDPNSLCGQVSGGQQRRISV------ 71
E + + L +SGG++ + +
Sbjct: 236 GELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAM 295
Query: 72 AVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCIITTHYIEEARHAHKV 129
++ + LLILDEPT LD + + I+ +H E A V
Sbjct: 296 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 353
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 50.9 bits (121), Expect = 3e-09
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTC 113
N ++SG QQ+R+++A ++ P LL+LDEP + LD + D+ ++ + S GVT
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL 194
Query: 114 IITTHYIEEARH-AHKV 129
++ +H + A +V
Sbjct: 195 LVVSHDPADIFAIADRV 211
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 49.7 bits (118), Expect = 7e-09
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTC 113
+ +SGG+Q+R+++A ++ +P +L+LDEP + LDP + + L L +T
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181
Query: 114 IITTHYIEEARH-AHKV 129
+ TH EAR A ++
Sbjct: 182 LHITHDQTEARIMADRI 198
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 46.2 bits (109), Expect = 1e-07
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 55 NSLCGQVSGGQQRRISVAVTMMHSPLLLILDEPTAGLDPLISDTIWQHLRTL-SATGVTC 113
+ ++SGG+++R+++A ++ P LL+LDEP + +D + + LR + V
Sbjct: 121 DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI 180
Query: 114 IITTHYIEEARH-AHKV 129
+ TH + EA A +V
Sbjct: 181 LHVTHDLIEAAMLADEV 197
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 37.4 bits (85), Expect = 2e-04
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 60 QVSGGQQRRISVAVTM-----MHSPLLLILDEPTAGLDPLISDTIWQHLRTLSATGVTCI 114
+SGG++ ++A+ SP +LDE A LD I ++R + I
Sbjct: 332 YLSGGEKTVAALALLFAINSYQPSPFF-VLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390
Query: 115 ITTHYIEEARHAHK 128
+ + +
Sbjct: 391 VISLKNTMFEKSDA 404
>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}
Length = 232
Score = 26.2 bits (56), Expect = 1.2
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 76 MHSPLLLI--LDEPTAGLDPLISDTIWQHLRTLSATGVTCIITT 117
+ PLL+ LD L L V I+ +
Sbjct: 1 IQQPLLVFSDLDGTLLDSHSYDWQPAAPWLTRLREANVPVILCS 44
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium
cellulolyticum [TaxId: 1521]}
Length = 431
Score = 24.2 bits (52), Expect = 7.6
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 42 PWYISLLNGLPDPNSLCGQVSGG 64
Y + N P + L G + GG
Sbjct: 370 YTYANGDNAKPAKHLLTGALVGG 392
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4,
N-terminal domain {Thermomonospora fusca [TaxId: 2021]}
Length = 460
Score = 23.8 bits (51), Expect = 8.8
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 42 PWYISLLNGLPDPNSLCGQVSGG 64
W S+ + + + L G + GG
Sbjct: 383 SWTDSIASPAENRHVLYGALVGG 405
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.447
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 525,148
Number of extensions: 22224
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 28
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.3 bits)