BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy477
         (60 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9Y5N5|HEMK2_HUMAN HemK methyltransferase family member 2 OS=Homo sapiens GN=N6AMT1
           PE=1 SV=3
          Length = 214

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 37/54 (68%)

Query: 2   DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTRS 55
           D LS KG+ YL+ IKEN+PE+I+  +   G  G T L+RQ   E LSVLKFT+S
Sbjct: 161 DLLSPKGLFYLVTIKENNPEEILKIMKTKGLQGTTALSRQAGQETLSVLKFTKS 214


>sp|Q9UT94|MTQ2_SCHPO eRF1 methyltransferase catalytic subunit mtq2
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=mtq2 PE=3 SV=1
          Length = 231

 Score = 33.9 bits (76), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 2   DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTR 54
           D LS  G+ Y++ +  N    I   L + GF+    L R+   E LS+L+  R
Sbjct: 171 DILSQDGVFYMVAVARNKLHSICEILQKDGFIVNETLKRKAGRETLSILRIYR 223


>sp|Q03920|MTQ2_YEAST eRF1 methyltransferase catalytic subunit MTQ2 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=MTQ2 PE=1
           SV=1
          Length = 221

 Score = 31.6 bits (70), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   LSDKGILYLLVIKENDPEDII-HCLSQYGFMGKTLLTRQVPGEKLSVLKFTR 54
           LS  G+ Y+L    N P+++I   +  Y +  K + TR+   E LSV  FTR
Sbjct: 170 LSPDGVAYILFCARNKPKEVIKRFVDTYKWNVKLIETRKAGWEVLSVYSFTR 221


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.139    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,135,966
Number of Sequences: 539616
Number of extensions: 689114
Number of successful extensions: 1612
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1609
Number of HSP's gapped (non-prelim): 3
length of query: 60
length of database: 191,569,459
effective HSP length: 33
effective length of query: 27
effective length of database: 173,762,131
effective search space: 4691577537
effective search space used: 4691577537
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)