Query psy477
Match_columns 60
No_of_seqs 100 out of 283
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 17:15:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3191|consensus 99.7 3.8E-17 8.2E-22 108.7 6.6 54 2-55 156-209 (209)
2 TIGR00537 hemK_rel_arch HemK-r 98.7 1.2E-07 2.7E-12 59.8 6.8 52 2-53 128-179 (179)
3 PRK14968 putative methyltransf 97.7 0.00026 5.7E-09 43.8 6.4 53 2-54 136-188 (188)
4 PRK14967 putative methyltransf 96.8 0.0038 8.2E-08 40.7 5.1 43 2-44 147-189 (223)
5 TIGR03704 PrmC_rel_meth putati 96.0 0.014 3E-07 39.3 4.4 40 2-42 204-243 (251)
6 PRK00377 cbiT cobalt-precorrin 94.7 0.046 9.9E-07 35.0 3.4 36 2-37 133-168 (198)
7 PRK00121 trmB tRNA (guanine-N( 94.4 0.028 6.2E-07 36.3 1.9 35 2-36 144-178 (202)
8 COG2890 HemK Methylase of poly 93.6 0.51 1.1E-05 32.4 6.9 52 2-55 226-277 (280)
9 PF05175 MTS: Methyltransferas 93.3 0.19 4.1E-06 31.5 4.1 37 2-41 128-164 (170)
10 PRK00517 prmA ribosomal protei 92.4 0.34 7.4E-06 32.2 4.6 36 2-37 201-236 (250)
11 PRK08287 cobalt-precorrin-6Y C 92.3 0.17 3.6E-06 31.9 2.9 32 2-33 119-150 (187)
12 PRK01544 bifunctional N5-gluta 90.4 0.84 1.8E-05 33.8 5.3 47 2-49 257-303 (506)
13 PRK14966 unknown domain/N5-glu 90.4 1.1 2.4E-05 33.0 5.9 50 2-52 369-418 (423)
14 PRK00107 gidB 16S rRNA methylt 90.2 2 4.2E-05 27.9 6.4 49 2-51 133-185 (187)
15 PF05148 Methyltransf_8: Hypot 89.6 0.8 1.7E-05 31.3 4.3 53 2-57 146-200 (219)
16 PRK07402 precorrin-6B methylas 89.3 0.7 1.5E-05 29.3 3.7 53 2-56 130-185 (196)
17 TIGR00438 rrmJ cell division p 88.7 0.99 2.1E-05 28.4 4.0 29 2-30 134-162 (188)
18 TIGR03534 RF_mod_PrmC protein- 87.6 1.1 2.3E-05 28.9 3.8 33 2-35 205-237 (251)
19 COG4123 Predicted O-methyltran 87.5 2.2 4.7E-05 29.5 5.4 54 2-56 158-214 (248)
20 TIGR00091 tRNA (guanine-N(7)-) 83.8 1 2.2E-05 28.8 2.2 33 2-34 120-153 (194)
21 PLN02233 ubiquinone biosynthes 83.5 5.8 0.00013 26.6 5.9 17 19-35 228-244 (261)
22 KOG3045|consensus 82.9 3.2 7E-05 29.7 4.6 52 2-56 252-305 (325)
23 PRK09328 N5-glutamine S-adenos 82.5 4.5 9.8E-05 26.5 5.0 31 2-33 226-256 (275)
24 KOG0862|consensus 81.7 1.7 3.7E-05 29.6 2.8 23 2-24 62-84 (216)
25 KOG1271|consensus 80.3 3.2 7E-05 28.4 3.7 32 2-34 169-200 (227)
26 COG2242 CobL Precorrin-6B meth 79.8 6.9 0.00015 26.1 5.1 55 2-57 123-177 (187)
27 PTZ00146 fibrillarin; Provisio 79.8 11 0.00024 26.6 6.4 53 2-55 225-288 (293)
28 cd04883 ACT_AcuB C-terminal AC 79.0 6.9 0.00015 20.5 4.2 25 11-35 45-69 (72)
29 TIGR00406 prmA ribosomal prote 78.5 2.7 5.8E-05 28.6 2.9 35 2-37 247-281 (288)
30 TIGR01934 MenG_MenH_UbiE ubiqu 78.2 13 0.00027 23.2 5.8 19 20-38 191-209 (223)
31 PRK11036 putative S-adenosyl-L 78.1 6.5 0.00014 25.9 4.7 16 20-35 188-203 (255)
32 PRK11727 23S rRNA mA1618 methy 77.5 6.7 0.00015 27.8 4.8 41 3-43 256-296 (321)
33 PRK04266 fibrillarin; Provisio 76.9 12 0.00027 24.8 5.7 36 2-37 164-208 (226)
34 PRK15001 SAM-dependent 23S rib 74.6 4.9 0.00011 29.0 3.5 48 2-56 328-375 (378)
35 PF06897 DUF1269: Protein of u 74.3 6.6 0.00014 23.5 3.6 30 2-31 50-79 (102)
36 PRK10556 hypothetical protein; 74.0 4.1 9E-05 25.1 2.6 25 19-43 4-28 (111)
37 smart00828 PKS_MT Methyltransf 73.9 11 0.00025 23.9 4.8 35 2-36 92-141 (224)
38 TIGR00138 gidB 16S rRNA methyl 73.4 8.8 0.00019 24.5 4.2 34 2-36 130-166 (181)
39 cd04882 ACT_Bt0572_2 C-termina 72.7 7.6 0.00016 19.7 3.2 22 13-34 43-64 (65)
40 COG2144 Selenophosphate synthe 71.5 5.8 0.00013 28.6 3.3 36 7-42 258-293 (324)
41 PRK09489 rsmC 16S ribosomal RN 71.2 16 0.00035 25.8 5.4 51 2-59 291-341 (342)
42 PRK11873 arsM arsenite S-adeno 70.5 9.9 0.00022 25.1 4.1 38 2-39 171-230 (272)
43 PF10006 DUF2249: Uncharacteri 70.4 15 0.00032 19.8 5.5 32 3-36 22-55 (69)
44 smart00115 CASc Caspase, inter 70.0 8.2 0.00018 25.7 3.6 32 6-37 7-49 (241)
45 PF02769 AIRS_C: AIR synthase 68.4 22 0.00048 21.1 5.7 38 7-45 109-147 (153)
46 cd00291 SirA_YedF_YeeD SirA, Y 68.2 16 0.00034 19.2 6.3 35 4-38 23-57 (69)
47 PF05724 TPMT: Thiopurine S-me 67.9 32 0.0007 22.7 6.1 40 2-42 143-193 (218)
48 cd04908 ACT_Bt0572_1 N-termina 67.5 13 0.00028 19.5 3.5 18 18-35 48-65 (66)
49 PHA03411 putative methyltransf 66.8 13 0.00028 26.1 4.2 34 2-35 171-210 (279)
50 PF09400 DUF2002: Protein of u 65.6 9.1 0.0002 23.7 2.9 24 19-42 4-27 (111)
51 PLN02396 hexaprenyldihydroxybe 65.5 15 0.00033 25.8 4.4 19 19-37 269-287 (322)
52 PRK09555 feoA ferrous iron tra 65.5 22 0.00048 19.9 5.7 48 4-51 3-52 (74)
53 COG1092 Predicted SAM-dependen 65.3 11 0.00024 27.5 3.8 46 1-46 323-373 (393)
54 COG4004 Uncharacterized protei 65.1 7.9 0.00017 23.4 2.5 22 18-39 12-33 (96)
55 PRK13699 putative methylase; P 64.7 12 0.00027 24.8 3.7 33 2-35 60-92 (227)
56 TIGR02467 CbiE precorrin-6y C5 64.6 17 0.00038 23.2 4.2 49 4-52 136-186 (204)
57 KOG1540|consensus 64.4 7.1 0.00015 27.8 2.5 32 2-33 202-233 (296)
58 cd04909 ACT_PDH-BS C-terminal 63.7 6.6 0.00014 20.5 1.8 26 8-33 43-68 (69)
59 TIGR03533 L3_gln_methyl protei 63.0 33 0.00072 23.3 5.6 44 2-50 239-282 (284)
60 PRK11188 rrmJ 23S rRNA methylt 62.8 34 0.00074 22.2 5.4 49 2-51 153-205 (209)
61 PRK05134 bifunctional 3-demeth 62.7 29 0.00062 22.2 5.0 19 19-37 185-203 (233)
62 TIGR02752 MenG_heptapren 2-hep 61.9 30 0.00064 22.0 4.9 18 20-37 199-216 (231)
63 PRK11783 rlmL 23S rRNA m(2)G24 61.1 8 0.00017 29.8 2.5 44 2-46 644-687 (702)
64 PRK10905 cell division protein 59.5 59 0.0013 23.6 6.5 47 6-52 244-290 (328)
65 PF12123 Amidase02_C: N-acetyl 59.3 24 0.00053 18.4 3.7 33 4-36 10-45 (45)
66 PRK14105 selenophosphate synth 58.9 27 0.00059 24.3 4.7 39 11-49 297-335 (345)
67 TIGR03267 methan_mark_2 putati 58.9 24 0.00053 24.4 4.4 36 5-41 261-296 (323)
68 COG2241 CobL Precorrin-6B meth 58.8 19 0.00041 24.3 3.7 39 4-42 137-176 (210)
69 TIGR01983 UbiG ubiquinone bios 58.1 41 0.00089 21.2 5.1 17 20-36 184-200 (224)
70 PF01206 TusA: Sulfurtransfera 57.0 28 0.00062 18.4 5.3 35 4-38 24-58 (70)
71 cd06167 LabA_like LabA_like pr 56.7 31 0.00066 20.5 4.1 32 9-40 101-132 (149)
72 PF13774 Longin: Regulated-SNA 56.7 17 0.00036 20.0 2.8 22 3-24 28-49 (83)
73 PF01936 NYN: NYN domain; Int 55.7 17 0.00038 21.2 2.9 31 9-39 97-127 (146)
74 PRK11088 rrmA 23S rRNA methylt 55.6 31 0.00066 23.0 4.3 26 2-27 169-194 (272)
75 PRK06136 uroporphyrin-III C-me 55.2 41 0.00089 21.9 4.9 46 8-53 165-212 (249)
76 cd04906 ACT_ThrD-I_1 First of 54.9 8.8 0.00019 21.5 1.4 28 11-38 42-73 (85)
77 cd06061 PurM-like1 AIR synthas 54.3 27 0.00057 23.4 3.9 32 7-39 266-297 (298)
78 COG2521 Predicted archaeal met 54.1 24 0.00051 25.1 3.7 32 2-33 233-271 (287)
79 PLN02490 MPBQ/MSBQ methyltrans 53.6 45 0.00099 23.8 5.1 35 2-36 203-253 (340)
80 PRK00216 ubiE ubiquinone/menaq 53.5 53 0.0012 20.5 6.3 18 21-38 207-224 (239)
81 KOG3490|consensus 53.5 24 0.00051 21.9 3.2 26 10-35 78-103 (111)
82 cd02193 PurL Formylglycinamide 53.3 12 0.00025 25.2 2.0 29 11-39 243-271 (272)
83 PTZ00098 phosphoethanolamine N 53.2 35 0.00077 22.8 4.4 34 2-35 144-198 (263)
84 COG2813 RsmC 16S RNA G1207 met 52.4 30 0.00065 24.6 4.0 46 2-54 254-299 (300)
85 PRK13255 thiopurine S-methyltr 52.1 66 0.0014 21.1 6.4 37 2-39 143-190 (218)
86 COG2519 GCD14 tRNA(1-methylade 51.6 12 0.00026 26.1 1.9 32 2-33 183-214 (256)
87 PLN02625 uroporphyrin-III C-me 51.5 63 0.0014 21.7 5.4 43 11-53 180-224 (263)
88 TIGR00288 conserved hypothetic 51.0 33 0.00072 22.2 3.8 33 9-41 107-139 (160)
89 PF14026 DUF4242: Protein of u 51.0 44 0.00095 18.8 4.6 35 3-38 40-75 (77)
90 cd02196 PurM PurM (Aminoimidaz 51.0 23 0.00051 24.0 3.2 29 11-39 267-295 (297)
91 COG2813 RsmC 16S RNA G1207 met 50.5 14 0.0003 26.3 2.1 46 3-48 62-107 (300)
92 PF07862 Nif11: Nitrogen fixat 50.2 12 0.00026 19.0 1.3 18 18-35 27-44 (49)
93 TIGR03840 TMPT_Se_Te thiopurin 49.2 49 0.0011 21.7 4.5 39 2-41 140-189 (213)
94 TIGR02716 C20_methyl_CrtF C-20 48.9 28 0.00062 23.5 3.4 12 2-13 242-253 (306)
95 TIGR01177 conserved hypothetic 48.9 31 0.00067 23.8 3.6 28 2-32 282-309 (329)
96 PRK00943 selenophosphate synth 48.8 29 0.00062 24.3 3.5 30 11-40 305-334 (347)
97 cd03423 SirA SirA (also known 48.7 43 0.00093 18.0 6.2 35 4-38 23-57 (69)
98 PRK14901 16S rRNA methyltransf 48.6 36 0.00078 24.5 4.0 54 2-55 372-433 (434)
99 PF06877 RraB: Regulator of ri 48.4 15 0.00032 21.1 1.7 45 10-54 28-72 (104)
100 COG0293 FtsJ 23S rRNA methylas 48.3 68 0.0015 21.6 5.1 49 2-51 147-198 (205)
101 PF06325 PrmA: Ribosomal prote 48.1 36 0.00079 23.8 3.9 34 2-36 247-280 (295)
102 TIGR01469 cobA_cysG_Cterm urop 47.7 62 0.0013 20.8 4.7 41 12-52 165-207 (236)
103 PF08544 GHMP_kinases_C: GHMP 46.7 15 0.00032 19.8 1.4 25 7-31 59-83 (85)
104 cd00396 PurM-like AIR (aminoim 46.7 22 0.00047 22.8 2.5 30 9-38 192-221 (222)
105 TIGR03798 ocin_TIGR03798 bacte 46.0 15 0.00033 19.7 1.5 18 18-35 25-42 (64)
106 PF04028 DUF374: Domain of unk 46.0 47 0.001 18.7 3.5 30 6-35 8-37 (74)
107 TIGR00740 methyltransferase, p 45.8 28 0.00061 22.5 2.9 12 2-13 149-160 (239)
108 COG3870 Uncharacterized protei 45.4 72 0.0016 19.7 5.8 38 12-49 5-46 (109)
109 cd03421 SirA_like_N SirA_like_ 45.3 47 0.001 17.5 6.0 33 4-36 22-54 (67)
110 PRK14090 phosphoribosylformylg 44.9 38 0.00082 26.2 3.8 36 5-40 277-312 (601)
111 PLN02244 tocopherol O-methyltr 44.8 58 0.0013 22.7 4.5 13 2-14 211-223 (340)
112 COG2264 PrmA Ribosomal protein 44.3 51 0.0011 23.4 4.2 39 2-40 251-289 (300)
113 PLN02672 methionine S-methyltr 43.8 42 0.00091 27.8 4.1 39 2-41 266-305 (1082)
114 PRK05787 cobalt-precorrin-6Y C 43.7 76 0.0017 20.0 4.6 47 6-52 141-188 (210)
115 TIGR00878 purM phosphoribosyla 43.3 31 0.00067 24.0 2.9 30 11-40 300-329 (332)
116 cd00032 CASc Caspase, interleu 43.0 45 0.00098 22.0 3.6 32 6-37 8-51 (243)
117 COG0150 PurM Phosphoribosylami 42.9 62 0.0013 23.6 4.4 38 8-45 300-337 (345)
118 PRK15473 cbiF cobalt-precorrin 42.3 86 0.0019 20.9 4.9 36 17-52 173-210 (257)
119 PF00403 HMA: Heavy-metal-asso 42.0 29 0.00063 17.7 2.1 15 19-33 48-62 (62)
120 PRK10756 hypothetical protein; 41.8 28 0.0006 22.8 2.4 44 13-56 80-125 (157)
121 PRK05731 thiamine monophosphat 41.7 42 0.0009 22.9 3.4 31 11-41 266-296 (318)
122 PF02843 GARS_C: Phosphoribosy 41.3 70 0.0015 18.4 3.9 27 2-28 45-71 (93)
123 COG4558 ChuT ABC-type hemin tr 40.9 47 0.001 23.8 3.5 38 1-38 87-129 (300)
124 PF04083 Abhydro_lipase: Parti 40.7 37 0.00081 18.5 2.5 31 24-57 2-32 (63)
125 PF00765 Autoind_synth: Autoin 40.7 1E+02 0.0022 19.9 5.1 46 7-55 128-174 (182)
126 cd02195 SelD Selenophosphate s 40.6 47 0.001 22.5 3.5 29 11-39 258-286 (287)
127 PF09383 NIL: NIL domain; Int 40.5 58 0.0012 17.5 3.3 31 7-37 45-76 (76)
128 PF06153 DUF970: Protein of un 40.0 57 0.0012 19.9 3.4 30 11-40 4-33 (109)
129 PF01963 TraB: TraB family; I 39.8 22 0.00049 23.0 1.7 34 4-37 224-259 (259)
130 smart00874 B5 tRNA synthetase 39.8 42 0.00092 17.8 2.6 18 19-36 20-37 (71)
131 PF08168 NUC205: NUC205 domain 39.3 25 0.00054 18.5 1.5 14 4-17 22-35 (44)
132 PF08468 MTS_N: Methyltransfer 38.9 1E+02 0.0022 19.5 4.7 40 2-42 93-133 (155)
133 COG4747 ACT domain-containing 38.9 80 0.0017 20.2 4.0 29 5-36 40-68 (142)
134 TIGR00536 hemK_fam HemK family 38.5 1.2E+02 0.0027 20.4 5.4 31 2-33 232-263 (284)
135 PRK14615 4-diphosphocytidyl-2- 38.4 44 0.00096 22.9 3.1 35 3-37 259-294 (296)
136 PLN02336 phosphoethanolamine N 38.3 66 0.0014 23.1 4.1 34 2-35 357-410 (475)
137 TIGR01465 cobM_cbiF precorrin- 38.1 1.1E+02 0.0023 19.7 4.7 38 16-53 163-202 (229)
138 COG1809 (2R)-phospho-3-sulfola 38.1 79 0.0017 22.2 4.2 34 4-37 76-109 (258)
139 PRK10637 cysG siroheme synthas 38.0 1E+02 0.0022 22.5 5.0 47 6-52 373-421 (457)
140 COG2102 Predicted ATPases of P 38.0 60 0.0013 22.3 3.6 24 19-42 123-146 (223)
141 PRK09489 rsmC 16S ribosomal RN 38.0 47 0.001 23.5 3.2 41 2-42 100-140 (342)
142 PF03484 B5: tRNA synthetase B 37.9 69 0.0015 17.3 3.9 19 19-37 20-38 (70)
143 COG1854 LuxS LuxS protein invo 37.9 59 0.0013 21.4 3.4 26 4-29 77-105 (161)
144 PF11360 DUF3110: Protein of u 37.8 52 0.0011 19.1 2.9 24 16-39 53-76 (86)
145 TIGR01615 A_thal_3542 uncharac 37.8 39 0.00085 21.4 2.5 20 22-41 3-22 (131)
146 COG4803 Predicted membrane pro 37.7 74 0.0016 21.0 3.9 31 3-33 112-142 (170)
147 KOG0132|consensus 37.4 67 0.0015 26.2 4.2 36 5-40 455-490 (894)
148 cd03422 YedF YedF is a bacteri 37.0 71 0.0015 17.2 6.0 34 4-37 23-56 (69)
149 PF13732 DUF4162: Domain of un 36.6 46 0.00099 18.0 2.5 32 7-39 40-71 (84)
150 PF01269 Fibrillarin: Fibrilla 36.6 1E+02 0.0022 21.3 4.5 52 3-54 167-228 (229)
151 PRK14121 tRNA (guanine-N(7)-)- 36.4 35 0.00076 25.0 2.4 33 2-34 223-256 (390)
152 KOG4644|consensus 36.0 61 0.0013 25.8 3.7 43 7-49 899-942 (948)
153 cd04885 ACT_ThrD-I Tandem C-te 35.5 71 0.0015 16.8 3.2 15 20-34 52-66 (68)
154 KOG2997|consensus 35.4 43 0.00093 24.6 2.7 23 6-29 230-252 (366)
155 cd02203 PurL_repeat1 PurL subu 35.4 68 0.0015 21.9 3.6 39 10-49 265-303 (313)
156 PRK03612 spermidine synthase; 35.4 36 0.00077 25.3 2.4 33 2-34 403-439 (521)
157 PRK10258 biotin biosynthesis p 35.4 49 0.0011 21.5 2.8 15 2-16 128-142 (251)
158 cd02197 HypE HypE (Hydrogenase 35.3 60 0.0013 21.9 3.3 32 7-39 259-292 (293)
159 PRK11805 N5-glutamine S-adenos 35.1 1.3E+02 0.0028 20.8 5.0 31 2-34 251-281 (307)
160 PF01555 N6_N4_Mtase: DNA meth 35.0 19 0.0004 22.3 0.7 33 2-34 44-78 (231)
161 COG1400 SEC65 Signal recogniti 35.0 40 0.00086 20.2 2.1 31 14-44 28-58 (93)
162 TIGR01467 cobI_cbiL precorrin- 34.9 1.2E+02 0.0027 19.5 4.7 46 5-51 165-210 (230)
163 TIGR01204 bioW 6-carboxyhexano 34.6 56 0.0012 22.5 3.1 24 7-31 205-228 (232)
164 PRK04457 spermidine synthase; 34.6 92 0.002 21.0 4.1 31 2-33 165-196 (262)
165 PF05166 YcgL: YcgL domain; I 34.6 38 0.00081 19.4 1.9 18 17-34 52-69 (74)
166 PHA02591 hypothetical protein; 34.6 73 0.0016 18.8 3.1 30 7-37 36-65 (83)
167 TIGR01033 DNA-binding regulato 34.5 1.2E+02 0.0026 20.7 4.6 51 4-54 90-144 (238)
168 PF03460 NIR_SIR_ferr: Nitrite 34.1 76 0.0016 16.6 3.3 26 4-29 43-68 (69)
169 PRK02260 S-ribosylhomocysteina 33.6 53 0.0012 21.4 2.7 26 4-29 77-105 (158)
170 PRK11524 putative methyltransf 33.6 36 0.00079 23.0 2.0 30 2-33 68-97 (284)
171 PRK11207 tellurite resistance 33.6 78 0.0017 20.1 3.5 32 2-35 122-166 (197)
172 COG3735 Uncharacterized protei 33.4 58 0.0013 23.3 3.1 33 4-36 263-297 (299)
173 PF03141 Methyltransf_29: Puta 33.3 1.2E+02 0.0027 23.2 4.9 46 2-50 455-504 (506)
174 cd03420 SirA_RHOD_Pry_redox Si 33.2 83 0.0018 16.9 6.1 35 3-37 22-56 (69)
175 PF11823 DUF3343: Protein of u 33.0 86 0.0019 16.9 3.9 31 7-37 39-69 (73)
176 PF02390 Methyltransf_4: Putat 32.8 28 0.0006 22.6 1.3 32 2-33 121-154 (195)
177 cd02192 PurM-like3 AIR synthas 32.7 56 0.0012 22.2 2.8 28 11-38 255-282 (283)
178 PF13669 Glyoxalase_4: Glyoxal 32.6 88 0.0019 17.5 3.3 29 7-35 66-94 (109)
179 COG4798 Predicted methyltransf 32.5 75 0.0016 22.0 3.4 33 2-35 154-201 (238)
180 PRK13798 putative OHCU decarbo 31.8 46 0.001 21.4 2.2 27 3-29 108-134 (166)
181 COG2230 Cfa Cyclopropane fatty 31.8 92 0.002 21.9 3.8 19 2-20 164-182 (283)
182 TIGR02072 BioC biotin biosynth 31.4 69 0.0015 19.9 2.9 18 2-19 123-140 (240)
183 PF02664 LuxS: S-Ribosylhomocy 31.3 69 0.0015 20.8 3.0 25 5-29 78-105 (157)
184 PRK05385 phosphoribosylaminoim 31.1 64 0.0014 22.2 2.9 30 10-39 297-326 (327)
185 PF07927 YcfA: YcfA-like prote 30.9 61 0.0013 16.4 2.2 15 21-35 2-16 (56)
186 PLN02232 ubiquinone biosynthes 30.7 36 0.00078 21.0 1.5 17 2-18 69-85 (160)
187 PF08478 POTRA_1: POTRA domain 30.5 78 0.0017 16.3 2.7 30 19-49 35-64 (69)
188 TIGR00452 methyltransferase, p 30.4 1.8E+02 0.0038 20.5 5.1 34 2-35 213-269 (314)
189 PF13468 Glyoxalase_3: Glyoxal 30.4 1.4E+02 0.0029 18.4 4.6 29 5-33 73-101 (175)
190 cd04886 ACT_ThrD-II-like C-ter 30.1 79 0.0017 15.6 4.3 16 20-35 57-72 (73)
191 PF04239 DUF421: Protein of un 29.9 46 0.00099 19.4 1.8 20 3-22 51-70 (99)
192 TIGR01209 RNA ligase, Pab1020 29.8 1.8E+02 0.0038 21.4 5.1 41 12-54 315-355 (374)
193 COG0017 AsnS Aspartyl/asparagi 29.8 57 0.0012 24.4 2.6 34 1-34 349-383 (435)
194 COG4190 Predicted transcriptio 29.2 0.38 8.3E-06 30.9 -7.6 32 2-33 60-91 (144)
195 PF03197 FRD2: Bacteriophage F 29.2 63 0.0014 19.7 2.4 17 13-29 82-98 (102)
196 PRK02886 hypothetical protein; 29.1 1.2E+02 0.0025 18.0 3.4 37 3-39 29-65 (87)
197 PF09974 DUF2209: Uncharacteri 28.8 15 0.00033 23.2 -0.4 25 3-33 72-96 (128)
198 PF04788 DUF620: Protein of un 28.8 77 0.0017 22.1 3.0 34 19-56 92-125 (245)
199 PF00536 SAM_1: SAM domain (St 28.3 67 0.0015 16.5 2.2 17 16-32 1-17 (64)
200 PF05846 Chordopox_A15: Chordo 28.0 47 0.001 19.8 1.6 15 7-21 72-86 (90)
201 PRK01683 trans-aconitate 2-met 28.0 1.5E+02 0.0033 19.2 4.2 13 2-14 118-130 (258)
202 PRK02302 hypothetical protein; 27.8 1.3E+02 0.0028 17.8 3.5 39 3-41 31-69 (89)
203 COG1437 CyaB Adenylate cyclase 27.7 1.4E+02 0.003 19.8 3.9 21 15-35 83-103 (178)
204 TIGR03180 UraD_2 OHCU decarbox 27.6 60 0.0013 20.7 2.2 27 3-29 103-129 (158)
205 COG3698 Predicted periplasmic 27.4 39 0.00085 23.6 1.4 11 3-13 119-129 (250)
206 PF14056 DUF4250: Domain of un 27.4 72 0.0016 17.2 2.2 17 19-35 33-49 (55)
207 TIGR03164 UHCUDC OHCU decarbox 27.3 60 0.0013 20.6 2.2 27 3-29 103-129 (157)
208 PRK03926 mevalonate kinase; Pr 27.3 1.7E+02 0.0037 19.6 4.5 26 7-33 260-285 (302)
209 PRK14904 16S rRNA methyltransf 27.2 1.1E+02 0.0023 22.2 3.6 33 2-34 365-401 (445)
210 PRK15068 tRNA mo(5)U34 methylt 27.2 1.8E+02 0.004 20.2 4.7 19 19-37 254-272 (322)
211 COG2384 Predicted SAM-dependen 27.0 1.6E+02 0.0035 20.3 4.3 28 7-34 111-138 (226)
212 PF03129 HGTP_anticodon: Antic 26.9 1.2E+02 0.0025 16.5 3.4 17 19-35 40-56 (94)
213 PF09902 DUF2129: Uncharacteri 26.8 1.3E+02 0.0028 17.0 3.7 36 4-39 26-61 (71)
214 PRK01213 phosphoribosylformylg 26.7 1.1E+02 0.0023 23.7 3.7 31 10-40 311-341 (724)
215 PF01728 FtsJ: FtsJ-like methy 26.3 59 0.0013 20.0 1.9 46 2-48 127-176 (181)
216 PRK05990 precorrin-2 C(20)-met 26.2 2E+02 0.0044 19.1 5.7 35 18-52 184-218 (241)
217 PHA02119 hypothetical protein 26.1 81 0.0018 18.4 2.3 28 20-50 56-83 (87)
218 PF04816 DUF633: Family of unk 26.0 2E+02 0.0043 18.9 5.1 26 9-34 94-119 (205)
219 PF04977 DivIC: Septum formati 25.9 77 0.0017 16.8 2.2 25 18-50 52-77 (80)
220 PF13344 Hydrolase_6: Haloacid 25.9 68 0.0015 18.5 2.1 28 8-35 31-59 (101)
221 TIGR01220 Pmev_kin_Gr_pos phos 25.9 1.4E+02 0.0031 21.0 4.0 29 7-35 322-350 (358)
222 PF15631 Imm-NTF2-2: NTF2 fold 25.8 74 0.0016 17.8 2.1 14 6-19 44-57 (66)
223 PF00590 TP_methylase: Tetrapy 25.7 1.7E+02 0.0037 18.2 4.0 46 6-52 157-204 (210)
224 TIGR00563 rsmB ribosomal RNA s 25.7 1E+02 0.0022 22.1 3.3 32 2-33 356-391 (426)
225 PF04720 DUF506: Protein of un 25.5 77 0.0017 21.5 2.5 20 21-40 91-110 (218)
226 TIGR00446 nop2p NOL1/NOP2/sun 25.3 94 0.002 20.8 2.9 28 2-29 187-216 (264)
227 PRK11018 hypothetical protein; 25.3 1.3E+02 0.0029 16.6 5.9 33 4-36 32-64 (78)
228 COG3045 CreA Uncharacterized p 25.1 27 0.00059 22.9 0.3 42 13-56 82-125 (165)
229 PRK00299 sulfur transfer prote 25.0 1.4E+02 0.003 16.7 6.1 34 3-36 32-65 (81)
230 PRK13256 thiopurine S-methyltr 24.9 1.8E+02 0.0038 19.6 4.2 39 2-41 151-199 (226)
231 PRK15327 type III secretion sy 24.9 1.4E+02 0.0029 22.1 3.8 32 6-37 192-225 (393)
232 TIGR01955 RfaH transcriptional 24.8 1.3E+02 0.0029 18.2 3.3 25 11-35 2-26 (159)
233 PRK08198 threonine dehydratase 24.7 1.4E+02 0.0031 21.1 3.9 27 11-37 374-403 (404)
234 COG0046 PurL Phosphoribosylfor 24.6 2.7E+02 0.0058 22.4 5.6 46 4-51 320-365 (743)
235 COG1911 RPL30 Ribosomal protei 24.6 78 0.0017 19.3 2.2 24 7-30 33-56 (100)
236 PF01577 Peptidase_S30: Potyvi 24.4 88 0.0019 20.5 2.6 22 20-41 113-134 (245)
237 TIGR00477 tehB tellurite resis 24.3 47 0.001 21.1 1.3 32 2-35 121-165 (195)
238 COG1999 Uncharacterized protei 24.1 1.5E+02 0.0032 19.4 3.6 27 3-29 176-202 (207)
239 PF11253 DUF3052: Protein of u 23.8 1.9E+02 0.0041 18.2 3.9 35 2-36 69-108 (127)
240 PF02330 MAM33: Mitochondrial 23.7 1.3E+02 0.0029 19.3 3.3 31 20-50 15-52 (204)
241 PRK00110 hypothetical protein; 23.6 2.3E+02 0.0049 19.4 4.6 50 4-53 90-143 (245)
242 PF00903 Glyoxalase: Glyoxalas 23.4 1.4E+02 0.003 16.1 4.7 31 13-43 80-110 (128)
243 PF11513 TA0956: Thermoplasma 23.4 62 0.0014 19.8 1.6 17 20-36 92-108 (110)
244 COG1654 BirA Biotin operon rep 23.3 45 0.00097 19.2 0.9 25 15-39 31-55 (79)
245 TIGR01736 FGAM_synth_II phosph 23.2 1.5E+02 0.0032 22.7 3.9 32 10-41 300-331 (715)
246 PRK01018 50S ribosomal protein 23.0 1.1E+02 0.0023 17.8 2.5 23 7-29 30-52 (99)
247 smart00596 PRE_C2HC PRE_C2HC d 22.7 88 0.0019 17.8 2.0 19 21-39 2-20 (69)
248 COG3916 LasI N-acyl-L-homoseri 22.5 1.3E+02 0.0029 20.4 3.2 46 8-56 137-183 (209)
249 cd01994 Alpha_ANH_like_IV This 22.5 1.3E+02 0.0028 19.4 3.1 24 18-41 124-147 (194)
250 PF11821 DUF3341: Protein of u 22.4 1.6E+02 0.0035 19.1 3.5 27 5-31 137-165 (173)
251 cd07263 Glo_EDI_BRP_like_16 Th 22.0 1.4E+02 0.0031 15.9 4.8 25 11-35 69-93 (119)
252 PRK05297 phosphoribosylformylg 22.0 1.7E+02 0.0037 24.7 4.2 37 4-40 539-575 (1290)
253 PF06399 GFRP: GTP cyclohydrol 21.9 98 0.0021 18.3 2.2 24 19-44 51-74 (83)
254 PF03698 UPF0180: Uncharacteri 21.9 95 0.0021 17.9 2.1 23 17-39 7-29 (80)
255 cd07245 Glo_EDI_BRP_like_9 Thi 21.8 1.4E+02 0.003 15.6 3.0 25 11-35 66-90 (114)
256 KOG3323|consensus 21.7 2.4E+02 0.0052 18.3 4.4 44 7-53 25-81 (149)
257 PRK01322 6-carboxyhexanoate--C 21.7 1.9E+02 0.0041 20.1 3.8 26 7-33 212-237 (242)
258 cd07894 Adenylation_RNA_ligase 21.6 3.1E+02 0.0067 19.6 5.8 45 11-55 281-325 (342)
259 PRK08317 hypothetical protein; 21.6 2.1E+02 0.0045 17.6 4.5 13 2-14 112-124 (241)
260 TIGR00472 pheT_bact phenylalan 21.5 2.3E+02 0.0049 22.4 4.6 34 19-52 18-51 (798)
261 COG4009 Uncharacterized protei 21.3 1.3E+02 0.0029 17.8 2.7 21 13-33 55-75 (88)
262 PRK02899 adaptor protein; Prov 21.1 1.6E+02 0.0034 19.4 3.3 30 6-35 136-169 (197)
263 PF05063 MT-A70: MT-A70 ; Int 21.0 1.6E+02 0.0035 18.4 3.3 33 3-35 41-73 (176)
264 COG1724 Predicted RNA binding 20.9 88 0.0019 17.7 1.8 16 19-34 8-23 (66)
265 PRK05576 cobalt-precorrin-2 C( 20.8 2.5E+02 0.0054 18.2 5.1 46 4-52 163-208 (229)
266 PF09047 MEF2_binding: MEF2 bi 20.6 40 0.00086 16.7 0.3 8 3-10 2-9 (35)
267 PF09349 OHCU_decarbox: OHCU d 20.6 69 0.0015 20.2 1.5 26 4-29 107-132 (159)
268 PF07530 PRE_C2HC: Associated 20.5 1.2E+02 0.0027 16.6 2.3 19 21-39 2-20 (68)
269 PRK11633 cell division protein 20.4 2.9E+02 0.0063 18.8 6.4 41 7-48 146-190 (226)
270 TIGR03877 thermo_KaiC_1 KaiC d 20.4 1.4E+02 0.0031 19.4 3.0 25 9-34 51-75 (237)
271 PF02485 Branch: Core-2/I-Bran 20.3 1.5E+02 0.0033 19.1 3.1 21 9-29 1-21 (244)
No 1
>KOG3191|consensus
Probab=99.70 E-value=3.8e-17 Score=108.74 Aligned_cols=54 Identities=41% Similarity=0.767 Sum_probs=52.4
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEEEeC
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTRS 55 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~r~ 55 (60)
++|||+|+||||++..|+|+||++.|++.||.+.++.+||+++|+|+|+||+|+
T Consensus 156 ~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~r~ 209 (209)
T KOG3191|consen 156 DILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQRKAGGETLSILKFTRS 209 (209)
T ss_pred hhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEEEEecCCceEEEEEEEeC
Confidence 589999999999999999999999999999999999999999999999999984
No 2
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.66 E-value=1.2e-07 Score=59.76 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=49.6
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFT 53 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~ 53 (60)
++|+|+|+++++....++..++.+.|++.||..+++.+.+.+.|+|+++|.|
T Consensus 128 ~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~ 179 (179)
T TIGR00537 128 EILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGLFFEELFAIKAW 179 (179)
T ss_pred HhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeecCceEEEEEEeC
Confidence 5789999999999999999999999999999999999999999999999976
No 3
>PRK14968 putative methyltransferase; Provisional
Probab=97.66 E-value=0.00026 Score=43.84 Aligned_cols=53 Identities=23% Similarity=0.407 Sum_probs=47.6
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEEEe
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTR 54 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~r 54 (60)
++|+|+|.++++..+..+.+++.+.|.+.||....+.++.+.++.+.++.+.+
T Consensus 136 ~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 136 RYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred HhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 57899999999998888889999999999999999999999999999887654
No 4
>PRK14967 putative methyltransferase; Provisional
Probab=96.78 E-value=0.0038 Score=40.69 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=37.9
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCC
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPG 44 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~ 44 (60)
++|+|+|+++++.+..++++++++.+++.||..+...++..++
T Consensus 147 ~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 189 (223)
T PRK14967 147 ALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVVASQWIPF 189 (223)
T ss_pred HhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 4789999999999998899999999999999999888776655
No 5
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.02 E-value=0.014 Score=39.26 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=34.0
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEee
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQV 42 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~ 42 (60)
++|+|+|++|+..... ..+++.+.|++.||..+++.++..
T Consensus 204 ~~L~~gG~l~l~~~~~-~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 204 DWLAPGGHLLVETSER-QAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred HhcCCCCEEEEEECcc-hHHHHHHHHHHCCCCceeeEcccc
Confidence 5799999999887654 578999999999999998887655
No 6
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=94.70 E-value=0.046 Score=34.99 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=30.6
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv 37 (60)
+.|+|+|++.+-++..+...++.+.+++.||..+++
T Consensus 133 ~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 168 (198)
T PRK00377 133 EIIKKGGRIVIDAILLETVNNALSALENIGFNLEIT 168 (198)
T ss_pred HHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEEE
Confidence 468999999887888888899999999999976654
No 7
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=94.41 E-value=0.028 Score=36.33 Aligned_cols=35 Identities=20% Similarity=0.096 Sum_probs=30.6
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKT 36 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~v 36 (60)
++|+|+|.+++.....+-..++.+.|++.||..++
T Consensus 144 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 144 RKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred HHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 47899999999988887788999999999998773
No 8
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=93.57 E-value=0.51 Score=32.40 Aligned_cols=52 Identities=19% Similarity=0.091 Sum_probs=41.5
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEEEeC
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTRS 55 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~r~ 55 (60)
++|+| |.++++-+..|..++|.+.+.+.|+ ...+...+-.++...++.+.+.
T Consensus 226 ~~l~~-~g~l~le~g~~q~~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~~ 277 (280)
T COG2890 226 DILKP-GGVLILEIGLTQGEAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKLR 277 (280)
T ss_pred HHcCC-CcEEEEEECCCcHHHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEec
Confidence 46888 5557888899999999999999998 6667777777777777776654
No 9
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=93.29 E-value=0.19 Score=31.51 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=25.8
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEe
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQ 41 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk 41 (60)
++|+|+|.+|++..+..+.+.+++..- | .++++.+++
T Consensus 128 ~~Lk~~G~l~lv~~~~~~~~~~l~~~f--~-~~~~~~~~~ 164 (170)
T PF05175_consen 128 RYLKPGGRLFLVINSHLGYERLLKELF--G-DVEVVAKNK 164 (170)
T ss_dssp HHEEEEEEEEEEEETTSCHHHHHHHHH--S---EEEEEES
T ss_pred HhccCCCEEEEEeecCCChHHHHHHhc--C-CEEEEEECC
Confidence 579999999999999988888744322 2 566665544
No 10
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=92.40 E-value=0.34 Score=32.17 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=30.8
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv 37 (60)
+.|+|+|.+++.-+..++.+++.+.+.+.||....+
T Consensus 201 ~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 201 RLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred HhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 468999999988777888999999999999986643
No 11
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=92.33 E-value=0.17 Score=31.92 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=28.3
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCce
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFM 33 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~ 33 (60)
+.|+|+|.+++..+...+.+++.+.+++.||.
T Consensus 119 ~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 119 AHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred HhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 56899999988877888899999999999986
No 12
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=90.38 E-value=0.84 Score=33.77 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=35.9
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSV 49 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~V 49 (60)
++|+|+|.+++ -+..+.++++.+.+.+.||....+..=-.+.+...+
T Consensus 257 ~~L~~gG~l~l-Eig~~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~ 303 (506)
T PRK01544 257 QFLKPNGKIIL-EIGFKQEEAVTQIFLDHGYNIESVYKDLQGHSRVIL 303 (506)
T ss_pred HhccCCCEEEE-EECCchHHHHHHHHHhcCCCceEEEecCCCCceEEE
Confidence 47899999876 477889999999999999986655554555555444
No 13
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=90.35 E-value=1.1 Score=32.99 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=38.5
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKF 52 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~ 52 (60)
++|+|+|.++ +-+..+.++++.+.+++.||..-.+..--.+.+...+.+.
T Consensus 369 ~~LkpgG~li-lEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 369 DRLAEGGFLL-LEHGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred HhcCCCcEEE-EEECccHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence 4799999865 5557788999999999999986555666677788776553
No 14
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=90.22 E-value=2 Score=27.88 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=35.3
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeC----CeEEEEEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVP----GEKLSVLK 51 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~----~E~L~Vlr 51 (60)
++|+|+|.++++. ..+.+.++.+..+..||....+..-..+ .-|+.|+|
T Consensus 133 ~~LkpGG~lv~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (187)
T PRK00107 133 PLLKPGGRFLALK-GRDPEEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIR 185 (187)
T ss_pred HhcCCCeEEEEEe-CCChHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEe
Confidence 5799999988775 5577888888888889997765554433 33566665
No 15
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=89.59 E-value=0.8 Score=31.28 Aligned_cols=53 Identities=19% Similarity=0.364 Sum_probs=38.3
Q ss_pred ceecCCCeEEE--EEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEEEeCCC
Q psy477 2 DSLSDKGILYL--LVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTRSCD 57 (60)
Q Consensus 2 ~~Ls~~G~~YL--v~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~r~~~ 57 (60)
++|.|+|.+++ |.|...++++-++.+.+.||...- +...+-+.+.+.|.+..+
T Consensus 146 RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~---~d~~n~~F~~f~F~K~~~ 200 (219)
T PF05148_consen 146 RVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKS---KDESNKHFVLFEFKKIRK 200 (219)
T ss_dssp HHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEE---EE--STTEEEEEEEE-SS
T ss_pred heeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEe---cccCCCeEEEEEEEEcCc
Confidence 57999999877 456667899999999999999663 555677778888887553
No 16
>PRK07402 precorrin-6B methylase; Provisional
Probab=89.27 E-value=0.7 Score=29.33 Aligned_cols=53 Identities=13% Similarity=-0.061 Sum_probs=30.7
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhC---CceEEEEEEEeeCCeEEEEEEEEeCC
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQY---GFMGKTLLTRQVPGEKLSVLKFTRSC 56 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~---G~~~~vv~~rk~~~E~L~Vlr~~r~~ 56 (60)
++|+|+|.+.+.........++.+.+++. |+++.-+.. -..+.++..+.++..
T Consensus 130 ~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 185 (196)
T PRK07402 130 QYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAV--NRLETRGFSQVFAAV 185 (196)
T ss_pred HhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEh--hhcccccCcCeeecC
Confidence 46899999988887655545566666654 444333322 224555554544433
No 17
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=88.66 E-value=0.99 Score=28.45 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=24.8
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhC
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQY 30 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~ 30 (60)
+.|+|+|++++.....++.+++++.++..
T Consensus 134 ~~LkpgG~lvi~~~~~~~~~~~l~~l~~~ 162 (188)
T TIGR00438 134 EVLKPKGNFVVKVFQGEEIDEYLNELRKL 162 (188)
T ss_pred HHccCCCEEEEEEccCccHHHHHHHHHhh
Confidence 47899999999888888899999988774
No 18
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=87.62 E-value=1.1 Score=28.89 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=26.0
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~ 35 (60)
++|+|+|.+++.. ..+..+++.+.|++.||.--
T Consensus 205 ~~L~~gG~~~~~~-~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 205 RLLKPGGWLLLEI-GYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred HhcccCCEEEEEE-CccHHHHHHHHHHhCCCCce
Confidence 4689999987754 55678899999999999733
No 19
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=87.49 E-value=2.2 Score=29.45 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=38.6
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEE---EEEeeCCeEEEEEEEEeCC
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTL---LTRQVPGEKLSVLKFTRSC 56 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv---~~rk~~~E~L~Vlr~~r~~ 56 (60)
.+|+|+|.+++|.-.+. ..+|++.|++.+|...-+ ..+.--.=++.++.+.+++
T Consensus 158 ~~lk~~G~l~~V~r~er-l~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~ 214 (248)
T COG4123 158 KLLKPGGRLAFVHRPER-LAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGG 214 (248)
T ss_pred HHccCCCEEEEEecHHH-HHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCC
Confidence 46899999999987664 677899999988886632 2344444456777777654
No 20
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=83.82 E-value=1 Score=28.77 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=25.0
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCC-ceE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYG-FMG 34 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G-~~~ 34 (60)
++|+|+|.+++..-...--+++++.+.+.+ |..
T Consensus 120 r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 120 NVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred HHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 478999999998766555677788888776 553
No 21
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=83.51 E-value=5.8 Score=26.59 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.1
Q ss_pred CHHHHHHHHhhCCceEE
Q psy477 19 DPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~~~ 35 (60)
+++++.+.|++.||...
T Consensus 228 s~~el~~ll~~aGF~~~ 244 (261)
T PLN02233 228 TGEELEKLALEAGFSSA 244 (261)
T ss_pred CHHHHHHHHHHCCCCEE
Confidence 67888899999999854
No 22
>KOG3045|consensus
Probab=82.88 E-value=3.2 Score=29.72 Aligned_cols=52 Identities=21% Similarity=0.445 Sum_probs=38.0
Q ss_pred ceecCCCeEEEEE--eccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEEEeCC
Q psy477 2 DSLSDKGILYLLV--IKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTRSC 56 (60)
Q Consensus 2 ~~Ls~~G~~YLv~--~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~r~~ 56 (60)
++|.++|..|+-= |..-|....++.+.+.||..+ ++...+-..+..-|.+.+
T Consensus 252 RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~---~~d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 252 RILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVK---HKDVSNKYFTLFEFKKTP 305 (325)
T ss_pred HHhccCceEEEEehhhhcccHHHHHHHHHHcCCeee---ehhhhcceEEEEEEecCC
Confidence 5899999999954 455677888899999999965 455555555666665544
No 23
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=82.54 E-value=4.5 Score=26.49 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=24.8
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCce
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFM 33 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~ 33 (60)
++|+|+|.+++-. ..+..+++.+.+.+.||.
T Consensus 226 ~~Lk~gG~l~~e~-g~~~~~~~~~~l~~~gf~ 256 (275)
T PRK09328 226 RYLKPGGWLLLEI-GYDQGEAVRALLAAAGFA 256 (275)
T ss_pred HhcccCCEEEEEE-CchHHHHHHHHHHhCCCc
Confidence 5789999988754 445678899999999997
No 24
>KOG0862|consensus
Probab=81.68 E-value=1.7 Score=29.64 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=20.1
Q ss_pred ceecCCCeEEEEEeccCCHHHHH
Q psy477 2 DSLSDKGILYLLVIKENDPEDII 24 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~ 24 (60)
.+++.+|+|||++|..+-|..+.
T Consensus 62 Hfli~~~Vcylvicd~~yP~kLA 84 (216)
T KOG0862|consen 62 HFLIESGVCYLVICDKSYPRKLA 84 (216)
T ss_pred EEEecCCEEEEEEecCCCcHHHH
Confidence 46889999999999999998764
No 25
>KOG1271|consensus
Probab=80.31 E-value=3.2 Score=28.39 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=25.1
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMG 34 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~ 34 (60)
++|||+|+|.+-.|--+ .+|+++.+...||+.
T Consensus 169 ~ll~~~gifvItSCN~T-~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 169 KLLSPGGIFVITSCNFT-KDELVEEFENFNFEY 200 (227)
T ss_pred hccCCCcEEEEEecCcc-HHHHHHHHhcCCeEE
Confidence 57999999866655554 899999999988663
No 26
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=79.79 E-value=6.9 Score=26.08 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=40.8
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEEEeCCC
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTRSCD 57 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~r~~~ 57 (60)
..|.|+|++-+=++..-.-...++.|++.|+. +++-.--...+.+.-...++..|
T Consensus 123 ~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~is~~~~lg~~~~~~~~n 177 (187)
T COG2242 123 ERLKPGGRLVANAITLETLAKALEALEQLGGR-EIVQVQISRGKPLGGGTMFRPVN 177 (187)
T ss_pred HHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEeecceeccCeeEeecCC
Confidence 46889999999898888888899999999996 66555555555555555555433
No 27
>PTZ00146 fibrillarin; Provisional
Probab=79.75 E-value=11 Score=26.56 Aligned_cols=53 Identities=26% Similarity=0.355 Sum_probs=33.4
Q ss_pred ceecCCCeEEEEEeccC------CHHHH----HHHHhhCCceEEEEEE-EeeCCeEEEEEEEEeC
Q psy477 2 DSLSDKGILYLLVIKEN------DPEDI----IHCLSQYGFMGKTLLT-RQVPGEKLSVLKFTRS 55 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N------~p~ei----~~~~~~~G~~~~vv~~-rk~~~E~L~Vlr~~r~ 55 (60)
++|+|+|.+.+ .++-+ +|+++ ++.|++.||....... ..+..-|-.|+=.++.
T Consensus 225 r~LKpGG~~vI-~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~~ 288 (293)
T PTZ00146 225 YFLKNGGHFII-SIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYRP 288 (293)
T ss_pred HhccCCCEEEE-EEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEcC
Confidence 47999999887 33322 36777 6778899999554333 3444555555544443
No 28
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.00 E-value=6.9 Score=20.47 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=18.5
Q ss_pred EEEEeccCCHHHHHHHHhhCCceEE
Q psy477 11 YLLVIKENDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 11 YLv~~~~N~p~ei~~~~~~~G~~~~ 35 (60)
+.+-..-++++++.+.+++.||.+.
T Consensus 45 v~i~v~~~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 45 LVFRVQTMNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred EEEEEecCCHHHHHHHHHHCCCeee
Confidence 3333444689999999999999753
No 29
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=78.48 E-value=2.7 Score=28.62 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=28.0
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv 37 (60)
+.|+|+|.+++.-+..++-+++.+.+++. |....+
T Consensus 247 ~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 247 RLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred HHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 57899999988877778889999998875 765543
No 30
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=78.19 E-value=13 Score=23.18 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=13.3
Q ss_pred HHHHHHHHhhCCceEEEEE
Q psy477 20 PEDIIHCLSQYGFMGKTLL 38 (60)
Q Consensus 20 p~ei~~~~~~~G~~~~vv~ 38 (60)
++++...+.+.||....+.
T Consensus 191 ~~~~~~~l~~aGf~~~~~~ 209 (223)
T TIGR01934 191 QEELAAMLKEAGFEEVRYR 209 (223)
T ss_pred HHHHHHHHHHcCCccceee
Confidence 4567788888898755433
No 31
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=78.15 E-value=6.5 Score=25.91 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.8
Q ss_pred HHHHHHHHhhCCceEE
Q psy477 20 PEDIIHCLSQYGFMGK 35 (60)
Q Consensus 20 p~ei~~~~~~~G~~~~ 35 (60)
|+++.+.+++.||...
T Consensus 188 ~~~l~~~l~~aGf~~~ 203 (255)
T PRK11036 188 PEQVYQWLEEAGWQIM 203 (255)
T ss_pred HHHHHHHHHHCCCeEe
Confidence 6889999999999865
No 32
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=77.49 E-value=6.7 Score=27.76 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=33.7
Q ss_pred eecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeC
Q psy477 3 SLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVP 43 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~ 43 (60)
+++..|+|..++++.++.+.+++.+++.|...-.+.+...|
T Consensus 256 ~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG 296 (321)
T PRK11727 256 FAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQG 296 (321)
T ss_pred HHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEeCC
Confidence 34568999999999999999999999999965556665554
No 33
>PRK04266 fibrillarin; Provisional
Probab=76.88 E-value=12 Score=24.84 Aligned_cols=36 Identities=31% Similarity=0.328 Sum_probs=23.5
Q ss_pred ceecCCCeEEEE-----EeccCCHH----HHHHHHhhCCceEEEE
Q psy477 2 DSLSDKGILYLL-----VIKENDPE----DIIHCLSQYGFMGKTL 37 (60)
Q Consensus 2 ~~Ls~~G~~YLv-----~~~~N~p~----ei~~~~~~~G~~~~vv 37 (60)
++|+|+|.+.+. +-....|. +.++.+++.||.....
T Consensus 164 r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~ 208 (226)
T PRK04266 164 FFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEV 208 (226)
T ss_pred HhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 478999998874 22222332 3568888899986543
No 34
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=74.64 E-value=4.9 Score=29.03 Aligned_cols=48 Identities=27% Similarity=0.254 Sum_probs=28.7
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEEEeCC
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTRSC 56 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~r~~ 56 (60)
++|+|+|.+|+|.-+. -.....|++.=-.++++.+ .=...|++..|..
T Consensus 328 ~~LkpGG~L~iV~nr~---l~y~~~L~~~fg~~~~va~----~~kf~vl~a~k~~ 375 (378)
T PRK15001 328 RCLKINGELYIVANRH---LDYFHKLKKIFGNCTTIAT----NNKFVVLKAVKLG 375 (378)
T ss_pred HhcccCCEEEEEEecC---cCHHHHHHHHcCCceEEcc----CCCEEEEEEEeCC
Confidence 5799999999997433 3344555443114555443 2234788877743
No 35
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=74.27 E-value=6.6 Score=23.50 Aligned_cols=30 Identities=17% Similarity=0.411 Sum_probs=26.7
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCC
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYG 31 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G 31 (60)
+.|.|+....+++++++.++.+.+.+++.|
T Consensus 50 ~~L~~GssAl~~lv~~~~~d~v~~~l~~~g 79 (102)
T PF06897_consen 50 EALKPGSSALFLLVDEATEDKVDAALRKFG 79 (102)
T ss_pred hhcCCCceEEEEEeccCCHHHHHHHHHhcC
Confidence 357889999999999999999999999976
No 36
>PRK10556 hypothetical protein; Provisional
Probab=73.97 E-value=4.1 Score=25.05 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=21.8
Q ss_pred CHHHHHHHHhhCCceEEEEEEEeeC
Q psy477 19 DPEDIIHCLSQYGFMGKTLLTRQVP 43 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~~~vv~~rk~~ 43 (60)
.|+||.+.+++.||....|..+-.+
T Consensus 4 RPDEVArVLe~aGF~~D~vt~~aYG 28 (111)
T PRK10556 4 RPDEVARVLEKAGFTVDVVTQKAYG 28 (111)
T ss_pred ChHHHHHHHHhcCceEEEeechhcc
Confidence 5999999999999999988876554
No 37
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=73.94 E-value=11 Score=23.88 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=25.5
Q ss_pred ceecCCCeEEEEEeccC---------------CHHHHHHHHhhCCceEEE
Q psy477 2 DSLSDKGILYLLVIKEN---------------DPEDIIHCLSQYGFMGKT 36 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N---------------~p~ei~~~~~~~G~~~~v 36 (60)
++|+|+|.+++...-.+ .++++.+.+.+.||...-
T Consensus 92 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~ 141 (224)
T smart00828 92 RHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVE 141 (224)
T ss_pred HHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 47899999887654211 256788889999998753
No 38
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=73.44 E-value=8.8 Score=24.46 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=20.4
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhh---CCceEEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQ---YGFMGKT 36 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~---~G~~~~v 36 (60)
++|+|+|++++.. ..+...++....++ .||+..-
T Consensus 130 ~~LkpgG~lvi~~-~~~~~~~~~~~~e~~~~~~~~~~~ 166 (181)
T TIGR00138 130 NLLKVGGYFLAYK-GKKYLDEIEEAKRKCQVLGVEPLE 166 (181)
T ss_pred HhcCCCCEEEEEc-CCCcHHHHHHHHHhhhhcCceEee
Confidence 4689999987664 33445554444333 5776443
No 39
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.69 E-value=7.6 Score=19.71 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=17.1
Q ss_pred EEeccCCHHHHHHHHhhCCceE
Q psy477 13 LVIKENDPEDIIHCLSQYGFMG 34 (60)
Q Consensus 13 v~~~~N~p~ei~~~~~~~G~~~ 34 (60)
+.+.-++++.+.+.+++.||.+
T Consensus 43 v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 43 LIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred EEEEeCCHHHHHHHHHHCCceE
Confidence 3444456999999999999964
No 40
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=71.49 E-value=5.8 Score=28.55 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=31.0
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEee
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQV 42 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~ 42 (60)
-|.-|+++...++.+++.+.+.+.|+.++++++--.
T Consensus 258 pg~gfv~~v~pe~veev~~v~~~~g~~a~~~GeVie 293 (324)
T COG2144 258 PGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGEVIE 293 (324)
T ss_pred CCCcEEEEeCHHHHHHHHHHHHHcCCceEEEEEecc
Confidence 366789999999999999999999999998887443
No 41
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=71.18 E-value=16 Score=25.80 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=30.7
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEEEeCCCCc
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTRSCDEK 59 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~r~~~~~ 59 (60)
++|+|+|.+++|+-+.-.-+++++.. .| .++++.+ .....|++..+..++|
T Consensus 291 ~~LkpgG~L~iVan~~l~y~~~l~~~--Fg-~~~~la~----~~~f~v~~a~~~~~~~ 341 (342)
T PRK09489 291 RHLNSGGELRIVANAFLPYPDLLDET--FG-SHEVLAQ----TGRFKVYRAIMTRQAK 341 (342)
T ss_pred HhcCcCCEEEEEEeCCCChHHHHHHH--cC-CeEEEEe----CCCEEEEEEEccCcCC
Confidence 46999999999987644444444421 12 2455443 3334788887765554
No 42
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=70.46 E-value=9.9 Score=25.10 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=26.0
Q ss_pred ceecCCCeEEEEEe--c--------------------cCCHHHHHHHHhhCCceEEEEEE
Q psy477 2 DSLSDKGILYLLVI--K--------------------ENDPEDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~--~--------------------~N~p~ei~~~~~~~G~~~~vv~~ 39 (60)
++|+|+|++++.-. . ...++++.+.+++.||....+..
T Consensus 171 r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 171 RVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred HHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 57999999988421 1 12466788888888998654433
No 43
>PF10006 DUF2249: Uncharacterized conserved protein (DUF2249); InterPro: IPR018720 This domain is found in a number of hypothetical bacterial and archaeal proteins with no known function. It is also found in proteins described as cupin 2 and hemerythrin. It represents a conserved region that shows distant similarity to the SirA protein (see IPR001455 from INTERPRO).
Probab=70.37 E-value=15 Score=19.82 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=23.7
Q ss_pred eecCCCeEEEEEeccCCHHHHHHHHhhC-Cc-eEEE
Q psy477 3 SLSDKGILYLLVIKENDPEDIIHCLSQY-GF-MGKT 36 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~~N~p~ei~~~~~~~-G~-~~~v 36 (60)
-|.++..+.++ ..-+|.-+...|+.. || ..+.
T Consensus 22 ~L~~Ge~l~lv--~d~~P~pL~~~l~~~~g~~~~~~ 55 (69)
T PF10006_consen 22 ELPPGETLELV--NDHDPRPLYPQLEERRGFFSWEY 55 (69)
T ss_pred cCCCCCEEEEE--eCCCCHHHHHHHHHhCCCceEEE
Confidence 36677775554 455699999999999 98 7664
No 44
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=70.01 E-value=8.2 Score=25.70 Aligned_cols=32 Identities=13% Similarity=0.313 Sum_probs=25.5
Q ss_pred CCCeEEEEEecc-----------CCHHHHHHHHhhCCceEEEE
Q psy477 6 DKGILYLLVIKE-----------NDPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 6 ~~G~~YLv~~~~-----------N~p~ei~~~~~~~G~~~~vv 37 (60)
|+|+++++--.. +|.+.+.+.+++.||++.+.
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~ 49 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVK 49 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEe
Confidence 788888876653 36888999999999988764
No 45
>PF02769 AIRS_C: AIR synthase related protein, C-terminal domain; InterPro: IPR010918 This entry includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; PDB: 2Z1F_A 2Z1E_A 2YXZ_D 2V9Y_A 2HS0_A 2HRU_A 2HS3_A 3D54_A 1VK3_A 2HS4_A ....
Probab=68.45 E-value=22 Score=21.07 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=27.5
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhCCc-eEEEEEEEeeCCe
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQYGF-MGKTLLTRQVPGE 45 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~G~-~~~vv~~rk~~~E 45 (60)
.|.+++.+..+ +-+++.+.+++.|+ .+.+|++-.....
T Consensus 109 ~g~~l~~v~~~-~~~~~~~~~~~~g~~~~~~IG~V~~~~~ 147 (153)
T PF02769_consen 109 EGRLLVAVPPE-DAEEFLAALKKAGIPNATVIGEVTEGPG 147 (153)
T ss_dssp STEEEEEEEGG-GHHHHHHHHHHTTCTTEEEEEEEESSSS
T ss_pred CCCEEEEEcHH-HHHHHHHHHHhCCCCCEEEEEEEEcCCC
Confidence 45544554444 45999999999999 7999988666443
No 46
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=68.17 E-value=16 Score=19.20 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=25.0
Q ss_pred ecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEE
Q psy477 4 LSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLL 38 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~ 38 (60)
|+++..+-+++....-+.+|.+.+++.|+.+..+.
T Consensus 23 l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~~ 57 (69)
T cd00291 23 LKSGEVLEVLLDDPGAVEDIPAWAKETGHEVLEVE 57 (69)
T ss_pred CCCCCEEEEEecCCcHHHHHHHHHHHcCCEEEEEE
Confidence 45666666666544448899999999999975433
No 47
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=67.88 E-value=32 Score=22.74 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=27.3
Q ss_pred ceecCCCeEEEEEeccCC-----------HHHHHHHHhhCCceEEEEEEEee
Q psy477 2 DSLSDKGILYLLVIKEND-----------PEDIIHCLSQYGFMGKTLLTRQV 42 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~-----------p~ei~~~~~~~G~~~~vv~~rk~ 42 (60)
++|+|+|.++|++..... +++|.+.+. .+|+.+.+.+...
T Consensus 143 ~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~~~~ 193 (218)
T PF05724_consen 143 SLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEEEDS 193 (218)
T ss_dssp HCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEEEE-
T ss_pred HHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEecccc
Confidence 578999997777765432 456666666 7999887776443
No 48
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=67.46 E-value=13 Score=19.54 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=15.9
Q ss_pred CCHHHHHHHHhhCCceEE
Q psy477 18 NDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 18 N~p~ei~~~~~~~G~~~~ 35 (60)
++++.+.+.+++.||.+.
T Consensus 48 ~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 48 SDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CCHHHHHHHHHHCCCEEE
Confidence 779999999999999864
No 49
>PHA03411 putative methyltransferase; Provisional
Probab=66.85 E-value=13 Score=26.09 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=28.5
Q ss_pred ceecCCCeEEEEEecc------CCHHHHHHHHhhCCceEE
Q psy477 2 DSLSDKGILYLLVIKE------NDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~------N~p~ei~~~~~~~G~~~~ 35 (60)
.+|.|+|.++++.++. -+|++..+.++..||...
T Consensus 171 ~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 171 YFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred heecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEec
Confidence 4688999999998874 359999999999998754
No 50
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=65.59 E-value=9.1 Score=23.67 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=18.9
Q ss_pred CHHHHHHHHhhCCceEEEEEEEee
Q psy477 19 DPEDIIHCLSQYGFMGKTLLTRQV 42 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~~~vv~~rk~ 42 (60)
.|+||.+.+++.||+...|..+-.
T Consensus 4 rpdeva~vle~~gf~~d~v~~~ay 27 (111)
T PF09400_consen 4 RPDEVARVLEKAGFERDYVTDKAY 27 (111)
T ss_dssp -HHHHHHHHHHTT-EEEEEETTEE
T ss_pred ChHHHHHHHHhcCceEEEeecccc
Confidence 599999999999999998766444
No 51
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=65.51 E-value=15 Score=25.82 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=15.6
Q ss_pred CHHHHHHHHhhCCceEEEE
Q psy477 19 DPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~~~vv 37 (60)
.|+++.+.+++.||....+
T Consensus 269 tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 269 TPEELSMILQRASVDVKEM 287 (322)
T ss_pred CHHHHHHHHHHcCCeEEEE
Confidence 4899999999999987644
No 52
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=65.50 E-value=22 Score=19.92 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=36.2
Q ss_pred ecCCCeEEEEEeccCCHHHHHHHHhhCCce--EEEEEEEeeCCeEEEEEE
Q psy477 4 LSDKGILYLLVIKENDPEDIIHCLSQYGFM--GKTLLTRQVPGEKLSVLK 51 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~--~~vv~~rk~~~E~L~Vlr 51 (60)
|.++-.+.++-+..+.+..+.+.+..+|+. .++...|++++..-..++
T Consensus 3 l~~G~~~~I~~~~~~~~~~~~~rL~~mGl~pG~~V~v~~~aP~gdPi~i~ 52 (74)
T PRK09555 3 LTPDTAYKITGFSREISPAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHIE 52 (74)
T ss_pred CCCCCEEEEEEEccCCChHHHHHHHHcCCCCCCEEEEEEECCCCCCEEEE
Confidence 566677777767667889999999999976 567777888876655555
No 53
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=65.30 E-value=11 Score=27.49 Aligned_cols=46 Identities=15% Similarity=0.155 Sum_probs=32.0
Q ss_pred CceecCCCeEEEEEeccCCHHH-----HHHHHhhCCceEEEEEEEeeCCeE
Q psy477 1 MDSLSDKGILYLLVIKENDPED-----IIHCLSQYGFMGKTLLTRQVPGEK 46 (60)
Q Consensus 1 ~~~Ls~~G~~YLv~~~~N~p~e-----i~~~~~~~G~~~~vv~~rk~~~E~ 46 (60)
+++|+|+|.++...++.+-..+ |++.....|....++.....+.+|
T Consensus 323 ~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~~~~~~~D~ 373 (393)
T COG1092 323 LRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIEGEGQPPDH 373 (393)
T ss_pred HHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEeeccCCCCCc
Confidence 3689999999999988876433 344445567777777655555554
No 54
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=65.14 E-value=7.9 Score=23.40 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=18.8
Q ss_pred CCHHHHHHHHhhCCceEEEEEE
Q psy477 18 NDPEDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 18 N~p~ei~~~~~~~G~~~~vv~~ 39 (60)
++|+.|++.|+++||.+++=+.
T Consensus 12 ~~~dri~~~l~e~g~~v~~eGD 33 (96)
T COG4004 12 PDPDRIMRGLSELGWTVSEEGD 33 (96)
T ss_pred CCHHHHHHHHHHhCeeEeeccc
Confidence 7899999999999998875443
No 55
>PRK13699 putative methylase; Provisional
Probab=64.66 E-value=12 Score=24.78 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=24.1
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~ 35 (60)
++|+|+|.+|+. ...+....+...+++.||...
T Consensus 60 RVLKpgg~l~if-~~~~~~~~~~~al~~~GF~l~ 92 (227)
T PRK13699 60 RVLKKDALMVSF-YGWNRVDRFMAAWKNAGFSVV 92 (227)
T ss_pred HHcCCCCEEEEE-eccccHHHHHHHHHHCCCEEe
Confidence 578998887654 444556778888899998744
No 56
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=64.59 E-value=17 Score=23.19 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=31.6
Q ss_pred ecCCCeEEEEEeccCCHHHHHHHHhhCCceE--EEEEEEeeCCeEEEEEEE
Q psy477 4 LSDKGILYLLVIKENDPEDIIHCLSQYGFMG--KTLLTRQVPGEKLSVLKF 52 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~--~vv~~rk~~~E~L~Vlr~ 52 (60)
++..+...++....+.|.+|.+.+.+.|+.- .+..-++++.+.=.|.++
T Consensus 136 l~~~~~~vvl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~ 186 (204)
T TIGR02467 136 LRGHRKVAVLTDPRNGPAEIARELIELGIGGSYELTVGENLGYEDERITEG 186 (204)
T ss_pred HhcCCcEEEEeCCCCCHHHHHHHHHHCCCCCCeEEEEEcccCCCCeEEEeC
Confidence 3344444455445578999999999999832 566666666555555543
No 57
>KOG1540|consensus
Probab=64.36 E-value=7.1 Score=27.81 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=21.1
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCce
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFM 33 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~ 33 (60)
++|.|+|+|+.+--+.-.++-+...+...-|.
T Consensus 202 RVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 202 RVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD 233 (296)
T ss_pred HhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence 57999999997765554455555555554444
No 58
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.69 E-value=6.6 Score=20.55 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=17.9
Q ss_pred CeEEEEEeccCCHHHHHHHHhhCCce
Q psy477 8 GILYLLVIKENDPEDIIHCLSQYGFM 33 (60)
Q Consensus 8 G~~YLv~~~~N~p~ei~~~~~~~G~~ 33 (60)
|...+++--.++++.+.+.+++.||.
T Consensus 43 ~~~~i~v~~~~~~~~~~~~L~~~G~~ 68 (69)
T cd04909 43 GILRISFKTQEDRERAKEILKEAGYE 68 (69)
T ss_pred EEEEEEECCHHHHHHHHHHHHHcCCc
Confidence 44433333234789999999999986
No 59
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=62.98 E-value=33 Score=23.33 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=30.1
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVL 50 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vl 50 (60)
++|+|+|++++=+- ++-+++.+.+.+.||... .....++..+++
T Consensus 239 ~~L~~gG~l~~e~g--~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~ 282 (284)
T TIGR03533 239 DHLNENGVLVVEVG--NSMEALEEAYPDVPFTWL---EFENGGDGVFLL 282 (284)
T ss_pred HhcCCCCEEEEEEC--cCHHHHHHHHHhCCCcee---eecCCCcEEEEE
Confidence 47899998876543 355789999998888753 445555555544
No 60
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=62.81 E-value=34 Score=22.19 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=32.0
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCce-EEEE---EEEeeCCeEEEEEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFM-GKTL---LTRQVPGEKLSVLK 51 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~-~~vv---~~rk~~~E~L~Vlr 51 (60)
++|.|+|.+.+.+....+..++...+++ .|. ++++ .+|.-..|.-.|-+
T Consensus 153 ~~LkpGG~~vi~~~~~~~~~~~l~~l~~-~f~~v~~~Kp~ssr~~s~e~~~~~~ 205 (209)
T PRK11188 153 DVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREVYIVAT 205 (209)
T ss_pred HHcCCCCEEEEEEecCcCHHHHHHHHHh-CceEEEEECCccccccCceeEEEee
Confidence 4799999999877776677888777665 444 3332 33666566555433
No 61
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=62.69 E-value=29 Score=22.19 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=14.3
Q ss_pred CHHHHHHHHhhCCceEEEE
Q psy477 19 DPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~~~vv 37 (60)
.++++.+.+++.||....+
T Consensus 185 ~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 185 KPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred CHHHHHHHHHHCCCeEeee
Confidence 4567888889999986644
No 62
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=61.90 E-value=30 Score=22.04 Aligned_cols=18 Identities=11% Similarity=0.344 Sum_probs=13.1
Q ss_pred HHHHHHHHhhCCceEEEE
Q psy477 20 PEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 20 p~ei~~~~~~~G~~~~vv 37 (60)
++++.+.+++.||....+
T Consensus 199 ~~~l~~~l~~aGf~~~~~ 216 (231)
T TIGR02752 199 MDELAEMFQEAGFKDVEV 216 (231)
T ss_pred HHHHHHHHHHcCCCeeEE
Confidence 367788888899985433
No 63
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=61.13 E-value=8 Score=29.75 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=33.1
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEK 46 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~ 46 (60)
++|+|+|.+++-.++. ......+.+.+.|+..+++.....+.-|
T Consensus 644 ~lL~~gG~l~~~~~~~-~~~~~~~~~~~~g~~~~~i~~~~~~~Dh 687 (702)
T PRK11783 644 RLLRPGGTLYFSNNKR-GFKMDEEGLAKLGLKAEEITAKTLPPDF 687 (702)
T ss_pred HHcCCCCEEEEEeCCc-cCChhHHHHHhCCCeEEEEecCCCCCCC
Confidence 5789999887655544 4555678888899999998877776655
No 64
>PRK10905 cell division protein DamX; Validated
Probab=59.52 E-value=59 Score=23.59 Aligned_cols=47 Identities=9% Similarity=0.034 Sum_probs=38.1
Q ss_pred CCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEE
Q psy477 6 DKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKF 52 (60)
Q Consensus 6 ~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~ 52 (60)
+.|.+-|=+....+.+.+-+..+++|+....+-...-.++..||++.
T Consensus 244 pa~~YTLQL~A~Ss~~~l~~fakKlgL~~y~vy~TtRnGkpWYVV~y 290 (328)
T PRK10905 244 PSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVS 290 (328)
T ss_pred CCCceEEEEEecCCHHHHHHHHHHcCCCceEEEEeccCCceEEEEEe
Confidence 46777777788888999999999999987777776667888999875
No 65
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=59.32 E-value=24 Score=18.38 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=18.3
Q ss_pred ecC-CCeEEEEEeccCC--HHHHHHHHhhCCceEEE
Q psy477 4 LSD-KGILYLLVIKEND--PEDIIHCLSQYGFMGKT 36 (60)
Q Consensus 4 Ls~-~G~~YLv~~~~N~--p~ei~~~~~~~G~~~~v 36 (60)
+.+ +|..|++.--..+ .+.+.+-|.+.||-.++
T Consensus 10 ~~~~~Gl~y~vT~~~s~~~L~k~~~wld~rgWwYe~ 45 (45)
T PF12123_consen 10 FQSKDGLPYFVTDPLSDAELDKFTAWLDERGWWYEV 45 (45)
T ss_dssp E-T-TS-EEEEE----HHHHHHHHHHHHHTT--EEE
T ss_pred EecCCCcEEEEeCCCCHHHHHHHHHHHHhcCcEEeC
Confidence 345 8999999876655 45667778888887653
No 66
>PRK14105 selenophosphate synthetase; Provisional
Probab=58.94 E-value=27 Score=24.29 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=28.5
Q ss_pred EEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEE
Q psy477 11 YLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSV 49 (60)
Q Consensus 11 YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~V 49 (60)
+|+++...+-+++++.+++.|..+.+|++-...+..+.+
T Consensus 297 Ll~tv~~e~~~~~~~~l~~~g~~~~~IG~V~~~g~~~~~ 335 (345)
T PRK14105 297 LLISVKPEYKDKLIDKLEKNNVYAFEVGKVVKNGVGKAK 335 (345)
T ss_pred EEEEecHHHHHHHHHHHHhCCCCceEEEEEEeCCCceEE
Confidence 556666667889999999999999999885443344443
No 67
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=58.90 E-value=24 Score=24.41 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=29.1
Q ss_pred cCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEe
Q psy477 5 SDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQ 41 (60)
Q Consensus 5 s~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk 41 (60)
.+++ -||+++...+.+++.+.+++.|..+.+|++-.
T Consensus 261 ~~g~-~ll~tv~~e~~~~~~~~~~~~g~~~~~IG~v~ 296 (323)
T TIGR03267 261 YPGS-GFVLTADPENVREIVRVLEDAGLTASVIGEVI 296 (323)
T ss_pred CCCC-CEEEEECchhHHHHHHHHHHcCCcEEEEEEEe
Confidence 3444 37889988889999999999999988888743
No 68
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=58.85 E-value=19 Score=24.28 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=27.8
Q ss_pred ecCCCeEEEEEeccCCHHHHHHHHhhCCce-EEEEEEEee
Q psy477 4 LSDKGILYLLVIKENDPEDIIHCLSQYGFM-GKTLLTRQV 42 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~-~~vv~~rk~ 42 (60)
+.++..+.++.-..+.|.+|.+.+.+.|+. .+++.=.+.
T Consensus 137 ~~~~~~~vil~~~~~~P~~IA~~L~~~G~~~~~~~VlE~L 176 (210)
T COG2241 137 LENGRRLVILTPDDFGPAEIAKLLTENGIGDSRVTVLENL 176 (210)
T ss_pred HhCCceEEEeCCCCCCHHHHHHHHHhCCCCCceEEEEccc
Confidence 445666667777777899999999999985 554443333
No 69
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=58.07 E-value=41 Score=21.18 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=12.8
Q ss_pred HHHHHHHHhhCCceEEE
Q psy477 20 PEDIIHCLSQYGFMGKT 36 (60)
Q Consensus 20 p~ei~~~~~~~G~~~~v 36 (60)
++++.+.+++.||...-
T Consensus 184 ~~~l~~~l~~~G~~i~~ 200 (224)
T TIGR01983 184 PSELTSWLESAGLRVKD 200 (224)
T ss_pred HHHHHHHHHHcCCeeee
Confidence 46788888888988654
No 70
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=56.99 E-value=28 Score=18.41 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=24.0
Q ss_pred ecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEE
Q psy477 4 LSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLL 38 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~ 38 (60)
|.++..+-+++-...-+++|...+++.|+....+.
T Consensus 24 l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~ 58 (70)
T PF01206_consen 24 LPPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEVE 58 (70)
T ss_dssp SGTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEEE
T ss_pred cCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 44566666666555557889999999999754433
No 71
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=56.71 E-value=31 Score=20.54 Aligned_cols=32 Identities=16% Similarity=0.042 Sum_probs=27.9
Q ss_pred eEEEEEeccCCHHHHHHHHhhCCceEEEEEEE
Q psy477 9 ILYLLVIKENDPEDIIHCLSQYGFMGKTLLTR 40 (60)
Q Consensus 9 ~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~r 40 (60)
-.++|++.+.|-..+++.+++.|..+.++..+
T Consensus 101 d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 101 DTIVLVSGDSDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred CEEEEEECCccHHHHHHHHHHcCCEEEEEccC
Confidence 35788888999999999999999999988776
No 72
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=56.66 E-value=17 Score=20.05 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=17.9
Q ss_pred eecCCCeEEEEEeccCCHHHHH
Q psy477 3 SLSDKGILYLLVIKENDPEDII 24 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~~N~p~ei~ 24 (60)
+|..+|.+||++....-|..+.
T Consensus 28 ~~~~~~i~~~citd~~~~~r~a 49 (83)
T PF13774_consen 28 YLVEDGIAYLCITDKSYPKRVA 49 (83)
T ss_dssp EEEETTEEEEEEEETTS-HHHH
T ss_pred EEEcCCeEEEEEEcCCCCcchH
Confidence 5678999999999998887764
No 73
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=55.68 E-value=17 Score=21.20 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=22.0
Q ss_pred eEEEEEeccCCHHHHHHHHhhCCceEEEEEE
Q psy477 9 ILYLLVIKENDPEDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 9 ~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~ 39 (60)
-.++|++.+.|--.+++.+++.|+++.++..
T Consensus 97 d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~~ 127 (146)
T PF01936_consen 97 DTIVLVSGDSDFAPLVRKLRERGKRVIVVGA 127 (146)
T ss_dssp SEEEEE---GGGHHHHHHHHHH--EEEEEE-
T ss_pred CEEEEEECcHHHHHHHHHHHHcCCEEEEEEe
Confidence 4578888889999999999999999998884
No 74
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=55.55 E-value=31 Score=23.00 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=18.9
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHH
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCL 27 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~ 27 (60)
++|+|+|.++++.-..+...++.+.+
T Consensus 169 rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 169 RVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred hhccCCCEEEEEeCCCcchHHHHHHh
Confidence 57999999998876666565665544
No 75
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=55.22 E-value=41 Score=21.94 Aligned_cols=46 Identities=11% Similarity=-0.031 Sum_probs=32.4
Q ss_pred CeEEEEEeccCCHHHHHHHHhhCCc--eEEEEEEEeeCCeEEEEEEEE
Q psy477 8 GILYLLVIKENDPEDIIHCLSQYGF--MGKTLLTRQVPGEKLSVLKFT 53 (60)
Q Consensus 8 G~~YLv~~~~N~p~ei~~~~~~~G~--~~~vv~~rk~~~E~L~Vlr~~ 53 (60)
+...++.-..+++.++.+.+.+.|+ +..++.-++++.+.=.|.+..
T Consensus 165 ~~~~vl~~~~~~~~~i~~~L~~~g~~~~~~~~v~~~lg~~~E~i~~~~ 212 (249)
T PRK06136 165 ADTLVIYMGVRNLPYIAAQLLAAGRAPDTPVAIIENGTTPEQRVVRGT 212 (249)
T ss_pred CCeEEEECCHHHHHHHHHHHHHcCCCCCCeEEEEEeCCCCCcEEEEEE
Confidence 3334556666779999999999998 445777777776665665543
No 76
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.95 E-value=8.8 Score=21.50 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=19.8
Q ss_pred EEEEeccCC----HHHHHHHHhhCCceEEEEE
Q psy477 11 YLLVIKEND----PEDIIHCLSQYGFMGKTLL 38 (60)
Q Consensus 11 YLv~~~~N~----p~ei~~~~~~~G~~~~vv~ 38 (60)
.++.++-.+ .+++.+.|++.||....+.
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~~ 73 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSAGYEVVDLS 73 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCCCeEECC
Confidence 344445334 8888999999999887643
No 77
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=54.34 E-value=27 Score=23.43 Aligned_cols=32 Identities=13% Similarity=0.365 Sum_probs=25.4
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhCCceEEEEEE
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~ 39 (60)
.|. +|+++..++-+++++.+++.|..+.+|.+
T Consensus 266 ~G~-ll~~v~~~~~~~~~~~~~~~g~~~~~IG~ 297 (298)
T cd06061 266 SGT-LLITVPPEKGDELVDALEEAGIPASVIGK 297 (298)
T ss_pred CCc-EEEEEChHHHHHHHHHHHHCCCCeEEEEe
Confidence 464 67777777899999999999988887764
No 78
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=54.14 E-value=24 Score=25.06 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=26.4
Q ss_pred ceecCCCeEEEEEeccC-------CHHHHHHHHhhCCce
Q psy477 2 DSLSDKGILYLLVIKEN-------DPEDIIHCLSQYGFM 33 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N-------~p~ei~~~~~~~G~~ 33 (60)
++|.|+|+++=-+..-. =|..|++.+++-||.
T Consensus 233 RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~ 271 (287)
T COG2521 233 RILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFE 271 (287)
T ss_pred HHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCce
Confidence 57899999887776543 389999999999998
No 79
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=53.58 E-value=45 Score=23.75 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=25.6
Q ss_pred ceecCCCeEEEEEec----------------cCCHHHHHHHHhhCCceEEE
Q psy477 2 DSLSDKGILYLLVIK----------------ENDPEDIIHCLSQYGFMGKT 36 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~----------------~N~p~ei~~~~~~~G~~~~v 36 (60)
++|+|+|.+.++-.. ....+++.+.+++.||..-.
T Consensus 203 rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 203 RVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred HhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEE
Confidence 578999998775321 12468899999999998543
No 80
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=53.51 E-value=53 Score=20.52 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=12.4
Q ss_pred HHHHHHHhhCCceEEEEE
Q psy477 21 EDIIHCLSQYGFMGKTLL 38 (60)
Q Consensus 21 ~ei~~~~~~~G~~~~vv~ 38 (60)
+++.+.+++.||....+.
T Consensus 207 ~~~~~~l~~aGf~~~~~~ 224 (239)
T PRK00216 207 EELAAMLEEAGFERVRYR 224 (239)
T ss_pred HHHHHHHHhCCCceeeee
Confidence 557777888899855433
No 81
>KOG3490|consensus
Probab=53.48 E-value=24 Score=21.87 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=23.2
Q ss_pred EEEEEeccCCHHHHHHHHhhCCceEE
Q psy477 10 LYLLVIKENDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 10 ~YLv~~~~N~p~ei~~~~~~~G~~~~ 35 (60)
+|-+.++.-=|+++++.++++|++..
T Consensus 78 ~YAi~VsG~Lpe~~v~~l~~~g~~Yk 103 (111)
T KOG3490|consen 78 MYAISVSGVLPEEVVESLKSRGVHYK 103 (111)
T ss_pred eEEEEecccCCHHHHHHHHhcceeee
Confidence 48888888899999999999998876
No 82
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=53.27 E-value=12 Score=25.25 Aligned_cols=29 Identities=7% Similarity=0.012 Sum_probs=24.2
Q ss_pred EEEEeccCCHHHHHHHHhhCCceEEEEEE
Q psy477 11 YLLVIKENDPEDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 11 YLv~~~~N~p~ei~~~~~~~G~~~~vv~~ 39 (60)
+++++...+.+++.+.+++.|..+.+|.+
T Consensus 243 ~l~~v~~~~~~~~~~~~~~~gi~~~~IG~ 271 (272)
T cd02193 243 GVIQVRAEDRDAVEEAQYGLADCVHVLGQ 271 (272)
T ss_pred eEEEECHHHHHHHHHHHhccCCCeEEecc
Confidence 47888877889999999999998888763
No 83
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=53.22 E-value=35 Score=22.82 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=22.3
Q ss_pred ceecCCCeEEEEEeccC---------------------CHHHHHHHHhhCCceEE
Q psy477 2 DSLSDKGILYLLVIKEN---------------------DPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N---------------------~p~ei~~~~~~~G~~~~ 35 (60)
++|+|+|.+++.-...+ .+++..+.+++.||..-
T Consensus 144 r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 144 KWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred HHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCee
Confidence 57899999887643221 34566666777777744
No 84
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=52.39 E-value=30 Score=24.63 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=28.0
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEEEe
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTR 54 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~r 54 (60)
++|.++|.++||+ |..-..-..|++.-=.++++.+-+- -.|++..+
T Consensus 254 ~~L~~gGeL~iVa---n~~l~y~~~L~~~Fg~v~~la~~~g----f~Vl~a~k 299 (300)
T COG2813 254 RHLKPGGELWIVA---NRHLPYEKKLKELFGNVEVLAKNGG----FKVLRAKK 299 (300)
T ss_pred HhhccCCEEEEEE---cCCCChHHHHHHhcCCEEEEEeCCC----EEEEEEec
Confidence 5799999999998 4544445555553114666655332 26666543
No 85
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=52.15 E-value=66 Score=21.15 Aligned_cols=37 Identities=14% Similarity=-0.015 Sum_probs=23.1
Q ss_pred ceecCCCeEEEEEeccC-----------CHHHHHHHHhhCCceEEEEEE
Q psy477 2 DSLSDKGILYLLVIKEN-----------DPEDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N-----------~p~ei~~~~~~~G~~~~vv~~ 39 (60)
++|+|+|+.+++..... .++++.+.+. .+|..+.+.+
T Consensus 143 ~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~-~~~~i~~~~~ 190 (218)
T PRK13255 143 ALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYA-GCFEIELLER 190 (218)
T ss_pred HHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhc-CCceEEEeee
Confidence 57999998776555332 2566766664 3477765554
No 86
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=51.59 E-value=12 Score=26.11 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=26.1
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCce
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFM 33 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~ 33 (60)
+.|.|+|++-..+=--|..+.+.+.|++.||.
T Consensus 183 ~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 183 DALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred HHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 46889998877776677788889999999875
No 87
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=51.51 E-value=63 Score=21.66 Aligned_cols=43 Identities=9% Similarity=-0.025 Sum_probs=30.3
Q ss_pred EEEEeccCCHHHHHHHHhhCCc--eEEEEEEEeeCCeEEEEEEEE
Q psy477 11 YLLVIKENDPEDIIHCLSQYGF--MGKTLLTRQVPGEKLSVLKFT 53 (60)
Q Consensus 11 YLv~~~~N~p~ei~~~~~~~G~--~~~vv~~rk~~~E~L~Vlr~~ 53 (60)
.++.-..++|.++.+.|.+.|+ +..++.-++++.+.=.|.+.+
T Consensus 180 ~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~t 224 (263)
T PLN02625 180 LVVYMGLGTLPSLAEKLIAAGLPPDTPAAAVERGTTPEQRVVFGT 224 (263)
T ss_pred EEEECchhhHHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEE
Confidence 3444456789999999999998 455777777776665555543
No 88
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=51.04 E-value=33 Score=22.19 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=28.5
Q ss_pred eEEEEEeccCCHHHHHHHHhhCCceEEEEEEEe
Q psy477 9 ILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQ 41 (60)
Q Consensus 9 ~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk 41 (60)
=.+++++++.|-..+++.+++.|-.+.+++.++
T Consensus 107 D~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~~~ 139 (160)
T TIGR00288 107 DAVALVTRDADFLPVINKAKENGKETIVIGAEP 139 (160)
T ss_pred CEEEEEeccHhHHHHHHHHHHCCCEEEEEeCCC
Confidence 346788999999999999999999999988543
No 89
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=51.01 E-value=44 Score=18.78 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=28.0
Q ss_pred eec-CCCeEEEEEeccCCHHHHHHHHhhCCceEEEEE
Q psy477 3 SLS-DKGILYLLVIKENDPEDIIHCLSQYGFMGKTLL 38 (60)
Q Consensus 3 ~Ls-~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~ 38 (60)
+++ .+|.+|.|.... |++.|.+.-++.||-+.-|.
T Consensus 40 ~v~~d~~k~~Cly~Ap-~~eaV~~~~~~aG~p~d~I~ 75 (77)
T PF14026_consen 40 YVSEDDGKIFCLYEAP-DEEAVREHARRAGLPADRIT 75 (77)
T ss_pred EEecCCCeEEEEEECC-CHHHHHHHHHHcCCCcceEE
Confidence 344 378899998887 59999999999999877554
No 90
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=50.98 E-value=23 Score=24.02 Aligned_cols=29 Identities=17% Similarity=0.411 Sum_probs=24.5
Q ss_pred EEEEeccCCHHHHHHHHhhCCceEEEEEE
Q psy477 11 YLLVIKENDPEDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 11 YLv~~~~N~p~ei~~~~~~~G~~~~vv~~ 39 (60)
+|++++.++.+++.+.+++.|..+.+|.+
T Consensus 267 ll~~v~~~~~~~~~~~l~~~gi~a~~IG~ 295 (297)
T cd02196 267 MVLIVSEEDADEVLEILEKLGEKAYVIGE 295 (297)
T ss_pred EEEEECHHHHHHHHHHHHhcCCCeEEEEE
Confidence 67777777888999999999999888875
No 91
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=50.55 E-value=14 Score=26.32 Aligned_cols=46 Identities=20% Similarity=0.124 Sum_probs=38.7
Q ss_pred eecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEE
Q psy477 3 SLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLS 48 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~ 48 (60)
.|+|+|.++++--+.-++....+.+.+.|-..++...|+....+.+
T Consensus 62 ~~~~g~~i~v~g~~~~g~~s~~k~l~~~~~~~~~~~a~~~~~~~~~ 107 (300)
T COG2813 62 RLPPGGEIVVVGEKRDGVRSAEKMLEKYGGPTKTDSARHCMRLHYY 107 (300)
T ss_pred hCCCCCeEEEEecccchHHHHHHHHHHhcCccccchHhhcceeEee
Confidence 4679999999999999999999999999988888887777654433
No 92
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=50.15 E-value=12 Score=19.00 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=15.5
Q ss_pred CCHHHHHHHHhhCCceEE
Q psy477 18 NDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 18 N~p~ei~~~~~~~G~~~~ 35 (60)
.+|+++++..++.||...
T Consensus 27 ~~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 27 QNPEEVVALAREAGYDFT 44 (49)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 379999999999999754
No 93
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=49.17 E-value=49 Score=21.69 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=25.2
Q ss_pred ceecCCCeEEEEEecc-----CC------HHHHHHHHhhCCceEEEEEEEe
Q psy477 2 DSLSDKGILYLLVIKE-----ND------PEDIIHCLSQYGFMGKTLLTRQ 41 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~-----N~------p~ei~~~~~~~G~~~~vv~~rk 41 (60)
+.|+|+|.++++.-+. ++ ++++.+.+. .+|+.+.+.+..
T Consensus 140 ~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~-~~~~i~~~~~~~ 189 (213)
T TIGR03840 140 ALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYG-GHYEIELLESRD 189 (213)
T ss_pred HHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhc-CCceEEEEeecc
Confidence 5799999887776653 22 366766664 367766655543
No 94
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=48.93 E-value=28 Score=23.47 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=10.0
Q ss_pred ceecCCCeEEEE
Q psy477 2 DSLSDKGILYLL 13 (60)
Q Consensus 2 ~~Ls~~G~~YLv 13 (60)
+.|+|+|++++.
T Consensus 242 ~~L~pgG~l~i~ 253 (306)
T TIGR02716 242 DAMRSGGRLLIL 253 (306)
T ss_pred HhcCCCCEEEEE
Confidence 468899999887
No 95
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=48.92 E-value=31 Score=23.77 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=21.0
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCc
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGF 32 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~ 32 (60)
++|+|+|++.+++....+.. +.+++.||
T Consensus 282 r~Lk~gG~lv~~~~~~~~~~---~~~~~~g~ 309 (329)
T TIGR01177 282 EVLKSEGWIVYAVPTRIDLE---SLAEDAFR 309 (329)
T ss_pred HHccCCcEEEEEEcCCCCHH---HHHhhcCc
Confidence 46899999988876665554 45677888
No 96
>PRK00943 selenophosphate synthetase; Provisional
Probab=48.83 E-value=29 Score=24.33 Aligned_cols=30 Identities=7% Similarity=0.133 Sum_probs=25.0
Q ss_pred EEEEeccCCHHHHHHHHhhCCceEEEEEEE
Q psy477 11 YLLVIKENDPEDIIHCLSQYGFMGKTLLTR 40 (60)
Q Consensus 11 YLv~~~~N~p~ei~~~~~~~G~~~~vv~~r 40 (60)
+|+++..++-+++++.+++.|..+.+|.+-
T Consensus 305 ll~~v~~~~a~~v~~~l~~~g~~a~vIG~V 334 (347)
T PRK00943 305 LLVAVAPEAEAEVLAIAAEHGIELAAIGEL 334 (347)
T ss_pred EEEEeCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 666667778899999999999998888863
No 97
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=48.66 E-value=43 Score=17.99 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=25.2
Q ss_pred ecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEE
Q psy477 4 LSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLL 38 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~ 38 (60)
|++++++=+++-...-.+.|-+.+++.|++...+.
T Consensus 23 l~~G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~~ 57 (69)
T cd03423 23 MKPGDTLLVLATDPSTTRDIPKFCTFLGHELLAQE 57 (69)
T ss_pred CCCCCEEEEEeCCCchHHHHHHHHHHcCCEEEEEE
Confidence 45666666666555557888999999999876433
No 98
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=48.59 E-value=36 Score=24.52 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=31.7
Q ss_pred ceecCCCeEEEEEeccCC---HHHHHHHHhhC-CceEEEEEE----EeeCCeEEEEEEEEeC
Q psy477 2 DSLSDKGILYLLVIKEND---PEDIIHCLSQY-GFMGKTLLT----RQVPGEKLSVLKFTRS 55 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~---p~ei~~~~~~~-G~~~~vv~~----rk~~~E~L~Vlr~~r~ 55 (60)
+.|.|+|.+...+|+.+. .+.|...++++ +|....... .+-+.+-.|+-++.|.
T Consensus 372 ~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 372 PLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred HhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEeC
Confidence 568999998877777743 33455666665 676442110 1123456677666654
No 99
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=48.44 E-value=15 Score=21.10 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=25.3
Q ss_pred EEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEEEe
Q psy477 10 LYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTR 54 (60)
Q Consensus 10 ~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~r 54 (60)
+++..-.+.+-+.....+.+.||.++......-.++.-+.+.+++
T Consensus 28 h~~~f~~~~~~~~f~~~~~~~g~~v~~~~~~~~d~~~~~~~~~~~ 72 (104)
T PF06877_consen 28 HWFYFEDEEDAEKFAEELEKLGYEVESAEEDEEDGDGPYCLDISR 72 (104)
T ss_dssp EEEEES-HHHHHHHHHHHHHHS---B----B-SS-SSBEEEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCEEEEeecccCCCCceEEEEEEE
Confidence 456667778888999999999999876555433345556666665
No 100
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=48.29 E-value=68 Score=21.55 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=36.1
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhC--Cce-EEEEEEEeeCCeEEEEEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQY--GFM-GKTLLTRQVPGEKLSVLK 51 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~--G~~-~~vv~~rk~~~E~L~Vlr 51 (60)
.+|.|+|.|..-+-.--+++++++.+++. ..+ .+.-++|+-..| +|++.
T Consensus 147 ~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E-~y~v~ 198 (205)
T COG0293 147 EVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSRE-IYLVA 198 (205)
T ss_pred HeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecCccccCCCce-EEEEE
Confidence 57999999999999888999999998873 122 335566777774 45543
No 101
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=48.06 E-value=36 Score=23.77 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=26.9
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKT 36 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~v 36 (60)
++|+|+|.+.+==+-.+.-++|.+.+++ ||....
T Consensus 247 ~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~ 280 (295)
T PF06325_consen 247 SLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVE 280 (295)
T ss_dssp HHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEE
T ss_pred HhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEE
Confidence 4678999887766667788999999976 998643
No 102
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=47.68 E-value=62 Score=20.82 Aligned_cols=41 Identities=12% Similarity=0.024 Sum_probs=28.6
Q ss_pred EEEeccCCHHHHHHHHhhCCc--eEEEEEEEeeCCeEEEEEEE
Q psy477 12 LLVIKENDPEDIIHCLSQYGF--MGKTLLTRQVPGEKLSVLKF 52 (60)
Q Consensus 12 Lv~~~~N~p~ei~~~~~~~G~--~~~vv~~rk~~~E~L~Vlr~ 52 (60)
++.-..+.|.++.+.+.+.|| +..++.-++++.+.=.|.+.
T Consensus 165 vl~~~~~~~~~i~~~L~~~g~~~~~~~~v~~~lg~~~E~i~~~ 207 (236)
T TIGR01469 165 VIYMGVRNLPEIAKELIEHGRSPDTPVAVVEWATTPNQRVLIG 207 (236)
T ss_pred EEECCHHHHHHHHHHHHHcCCCCCCcEEEEEECCCCCcEEEEE
Confidence 344466779999999999998 44566667777655555543
No 103
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=46.73 E-value=15 Score=19.76 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=17.8
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhCC
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQYG 31 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~G 31 (60)
||++|.++-...+.++|.+.+++.+
T Consensus 59 G~~v~~l~~~~~~~~~v~~~l~~~~ 83 (85)
T PF08544_consen 59 GPTVFALCKDEDDAERVAEALREHY 83 (85)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC
Confidence 6666766657777888888887643
No 104
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=46.66 E-value=22 Score=22.79 Aligned_cols=30 Identities=10% Similarity=0.167 Sum_probs=23.3
Q ss_pred eEEEEEeccCCHHHHHHHHhhCCceEEEEE
Q psy477 9 ILYLLVIKENDPEDIIHCLSQYGFMGKTLL 38 (60)
Q Consensus 9 ~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~ 38 (60)
-.+++++...+-+++.+.+++.|..+.+++
T Consensus 192 ~~ll~~v~~~~~~~~~~~~~~~g~~~~~IG 221 (222)
T cd00396 192 GGLLIAVPAEEADAVLLLLNGNGIDAAVIG 221 (222)
T ss_pred ccEEEEECHHHHHHHHHHHHHcCCCEEEeC
Confidence 345666666678889999999999888775
No 105
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=46.00 E-value=15 Score=19.73 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.7
Q ss_pred CCHHHHHHHHhhCCceEE
Q psy477 18 NDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 18 N~p~ei~~~~~~~G~~~~ 35 (60)
.+|+++++..++.||...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft 42 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFT 42 (64)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 569999999999999864
No 106
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=45.96 E-value=47 Score=18.73 Aligned_cols=30 Identities=27% Similarity=0.373 Sum_probs=25.3
Q ss_pred CCCeEEEEEeccCCHHHHHHHHhhCCceEE
Q psy477 6 DKGILYLLVIKENDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 6 ~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~ 35 (60)
++.-++.++|...|-|-+...++..||..-
T Consensus 8 ~~~~~~~lvS~s~DGe~ia~~~~~~G~~~i 37 (74)
T PF04028_consen 8 RRRKIAALVSRSRDGELIARVLERFGFRTI 37 (74)
T ss_pred CCCCEEEEEccCcCHHHHHHHHHHcCCCeE
Confidence 466788999999999999999999998754
No 107
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=45.83 E-value=28 Score=22.52 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=9.2
Q ss_pred ceecCCCeEEEE
Q psy477 2 DSLSDKGILYLL 13 (60)
Q Consensus 2 ~~Ls~~G~~YLv 13 (60)
+.|+|+|.+++.
T Consensus 149 ~~LkpgG~l~i~ 160 (239)
T TIGR00740 149 EGLNPNGVLVLS 160 (239)
T ss_pred HhcCCCeEEEEe
Confidence 468999987665
No 108
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.43 E-value=72 Score=19.67 Aligned_cols=38 Identities=11% Similarity=0.339 Sum_probs=30.0
Q ss_pred EEEeccCCHHHHHHHHhhCCceEEEEEE----EeeCCeEEEE
Q psy477 12 LLVIKENDPEDIIHCLSQYGFMGKTLLT----RQVPGEKLSV 49 (60)
Q Consensus 12 Lv~~~~N~p~ei~~~~~~~G~~~~vv~~----rk~~~E~L~V 49 (60)
+-+++.-|-+++.+.+.+.||++..+++ -|+++-++.|
T Consensus 5 iaivqd~da~~l~~~L~d~~fraTkLAsTGGFlkaGNTTfli 46 (109)
T COG3870 5 IAIVQDQDANELEDALTDKNFRATKLASTGGFLKAGNTTFLI 46 (109)
T ss_pred EEEEecccHHHHHHHHHhCCceeEEeeccCceeecCCeEEEE
Confidence 4456677899999999999999998887 5666666544
No 109
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=45.33 E-value=47 Score=17.50 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=21.4
Q ss_pred ecCCCeEEEEEeccCCHHHHHHHHhhCCceEEE
Q psy477 4 LSDKGILYLLVIKENDPEDIIHCLSQYGFMGKT 36 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~v 36 (60)
+.+++.+-+++...--.+.|...+++.||.+++
T Consensus 22 ~~~g~~l~v~~d~~~s~~~i~~~~~~~G~~~~~ 54 (67)
T cd03421 22 LEAGGEIEVLVDNEVAKENVSRFAESRGYEVSV 54 (67)
T ss_pred cCCCCEEEEEEcChhHHHHHHHHHHHcCCEEEE
Confidence 446666544443222247889999999999853
No 110
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=44.90 E-value=38 Score=26.16 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=28.3
Q ss_pred cCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEE
Q psy477 5 SDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTR 40 (60)
Q Consensus 5 s~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~r 40 (60)
|+..--++++++..+.+++.+.+++.|..+.+|++-
T Consensus 277 SESqeRmlv~V~~e~~~~~~~i~~~~~l~a~vIG~V 312 (601)
T PRK14090 277 SESQERMAVVTSPEKASRILEIAKKHLLFGDIVAEV 312 (601)
T ss_pred cCCCCeEEEEECHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 554444677777778999999999999998988864
No 111
>PLN02244 tocopherol O-methyltransferase
Probab=44.81 E-value=58 Score=22.65 Aligned_cols=13 Identities=8% Similarity=0.199 Sum_probs=10.9
Q ss_pred ceecCCCeEEEEE
Q psy477 2 DSLSDKGILYLLV 14 (60)
Q Consensus 2 ~~Ls~~G~~YLv~ 14 (60)
++|+|+|.++++.
T Consensus 211 rvLkpGG~lvi~~ 223 (340)
T PLN02244 211 RVAAPGGRIIIVT 223 (340)
T ss_pred HHcCCCcEEEEEE
Confidence 5789999998875
No 112
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=44.33 E-value=51 Score=23.38 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=30.3
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTR 40 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~r 40 (60)
+.|.|+|.+.|==+=...-+.|.+.+.+.||....+..|
T Consensus 251 ~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 251 RLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred HHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec
Confidence 357888887665555556889999999999998877666
No 113
>PLN02672 methionine S-methyltransferase
Probab=43.80 E-value=42 Score=27.76 Aligned_cols=39 Identities=13% Similarity=0.241 Sum_probs=28.8
Q ss_pred ceecCCCeEEEEEeccCCHHHHH-HHHhhCCceEEEEEEEe
Q psy477 2 DSLSDKGILYLLVIKENDPEDII-HCLSQYGFMGKTLLTRQ 41 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~-~~~~~~G~~~~vv~~rk 41 (60)
++|+|+|.+++ =+-.+..++|. +.+++.||+...+-.+|
T Consensus 266 ~~L~pgG~l~l-EiG~~q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 266 SVIKPMGIMIF-NMGGRPGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred HhccCCCEEEE-EECccHHHHHHHHHHHHCCCCeeEEeeeh
Confidence 47999998664 34444566777 58999999987777766
No 114
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=43.66 E-value=76 Score=20.01 Aligned_cols=47 Identities=13% Similarity=0.163 Sum_probs=29.9
Q ss_pred CCCeEEEEEeccCCHHHHHHHHhhCC-ceEEEEEEEeeCCeEEEEEEE
Q psy477 6 DKGILYLLVIKENDPEDIIHCLSQYG-FMGKTLLTRQVPGEKLSVLKF 52 (60)
Q Consensus 6 ~~G~~YLv~~~~N~p~ei~~~~~~~G-~~~~vv~~rk~~~E~L~Vlr~ 52 (60)
.+....++.-..+.|.++.+.+.+.| ....++.-++++.+.=.|.+.
T Consensus 141 ~~~~~v~l~~~~~~~~~i~~~L~~~g~~~~~~~v~~~l~~~~E~i~~~ 188 (210)
T PRK05787 141 NGRKVIMLPDPRFGPKEIAAELLERGKLERRIVVGENLSYPDERIHKL 188 (210)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHhCCCCCcEEEEEEeCCCCCeEEEeC
Confidence 33444444434568999999999888 455566667776555555543
No 115
>TIGR00878 purM phosphoribosylaminoimidazole synthetase. This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes.
Probab=43.34 E-value=31 Score=23.99 Aligned_cols=30 Identities=10% Similarity=0.225 Sum_probs=24.4
Q ss_pred EEEEeccCCHHHHHHHHhhCCceEEEEEEE
Q psy477 11 YLLVIKENDPEDIIHCLSQYGFMGKTLLTR 40 (60)
Q Consensus 11 YLv~~~~N~p~ei~~~~~~~G~~~~vv~~r 40 (60)
+|+++...+-+++++.+++.|..+.+|.+-
T Consensus 300 lli~v~~e~~~~~~~~l~~~gi~a~vIG~V 329 (332)
T TIGR00878 300 FVVIVPEEEVDKALALLNARGEKAWVIGEV 329 (332)
T ss_pred EEEEECHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 566666667889999999999988888753
No 116
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=43.00 E-value=45 Score=22.04 Aligned_cols=32 Identities=13% Similarity=0.344 Sum_probs=23.9
Q ss_pred CCCeEEEEEec------------cCCHHHHHHHHhhCCceEEEE
Q psy477 6 DKGILYLLVIK------------ENDPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 6 ~~G~~YLv~~~------------~N~p~ei~~~~~~~G~~~~vv 37 (60)
|+|+++++--. .||.+.+.+.+++.||.+.+.
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~ 51 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVK 51 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEe
Confidence 67777776542 356788899999999987653
No 117
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=42.89 E-value=62 Score=23.63 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=32.1
Q ss_pred CeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCe
Q psy477 8 GILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGE 45 (60)
Q Consensus 8 G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E 45 (60)
|+-++++....+.+++++.+.++|..+.++.+-..+..
T Consensus 300 GvG~v~iv~~e~~~~~~~~l~~~g~~a~~iG~V~~~~~ 337 (345)
T COG0150 300 GVGMVLIVPEEDAEKALALLKEQGETAYVIGRVEAGEG 337 (345)
T ss_pred ccceEEEEcHHHHHHHHHHHHhcCCceEEEEEEEeCCC
Confidence 67778888888899999999999999999988666543
No 118
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=42.28 E-value=86 Score=20.92 Aligned_cols=36 Identities=6% Similarity=-0.017 Sum_probs=25.6
Q ss_pred cCCHHHHHHHHhhCCc--eEEEEEEEeeCCeEEEEEEE
Q psy477 17 ENDPEDIIHCLSQYGF--MGKTLLTRQVPGEKLSVLKF 52 (60)
Q Consensus 17 ~N~p~ei~~~~~~~G~--~~~vv~~rk~~~E~L~Vlr~ 52 (60)
..+|+++.+.+.+.|+ +..++.-++++.+.=.|.+.
T Consensus 173 ~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~ 210 (257)
T PRK15473 173 VQRIHRVAERLIAGGYPATTPVAVIYKATWPESQTVRG 210 (257)
T ss_pred chhHHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEE
Confidence 3459999999999998 45566677777555555543
No 119
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=42.04 E-value=29 Score=17.73 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=13.2
Q ss_pred CHHHHHHHHhhCCce
Q psy477 19 DPEDIIHCLSQYGFM 33 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~ 33 (60)
++++|.+.+++.||+
T Consensus 48 ~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 48 SIEKIIEAIEKAGYE 62 (62)
T ss_dssp CHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHhCcC
Confidence 479999999999985
No 120
>PRK10756 hypothetical protein; Provisional
Probab=41.79 E-value=28 Score=22.75 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=30.5
Q ss_pred EEeccCCHHHHHHHHhhCCceEEEEEE--EeeCCeEEEEEEEEeCC
Q psy477 13 LVIKENDPEDIIHCLSQYGFMGKTLLT--RQVPGEKLSVLKFTRSC 56 (60)
Q Consensus 13 v~~~~N~p~ei~~~~~~~G~~~~vv~~--rk~~~E~L~Vlr~~r~~ 56 (60)
+.|.+++|-++...+.+.....++|.+ +...|-+|.|.|++...
T Consensus 80 IsCrQtGpI~~~~~i~~~k~~ge~VF~~~~Sl~FKsl~V~RiyD~~ 125 (157)
T PRK10756 80 ISCQQVGPIELSDKIKNGKAQGEVVFKKRTSLVFKKLQVVRFYDAK 125 (157)
T ss_pred eEEEEecCccccccccccccccCeeEecccccccceeEEEEEEcCC
Confidence 678888887766666554344555555 44569999999998644
No 121
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=41.71 E-value=42 Score=22.89 Aligned_cols=31 Identities=6% Similarity=0.091 Sum_probs=25.6
Q ss_pred EEEEeccCCHHHHHHHHhhCCceEEEEEEEe
Q psy477 11 YLLVIKENDPEDIIHCLSQYGFMGKTLLTRQ 41 (60)
Q Consensus 11 YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk 41 (60)
+|+++..++-+++.+.+++.|..+.+|++-.
T Consensus 266 ll~~v~~~~~~~~~~~l~~~g~~~~~IG~v~ 296 (318)
T PRK05731 266 LLFTFPPENRGALLAAAGHLGVGVTIIGRVT 296 (318)
T ss_pred EEEEECHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 5667777788899999999999999888743
No 122
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=41.29 E-value=70 Score=18.43 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=21.4
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHh
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLS 28 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~ 28 (60)
++++.+|+.+.|+..-++.++-.+..-
T Consensus 45 ~l~t~GGRvl~v~~~g~tl~eA~~~ay 71 (93)
T PF02843_consen 45 QLVTNGGRVLTVVALGDTLEEAREKAY 71 (93)
T ss_dssp EEEE-SSEEEEEEEEESSHHHHHHHHH
T ss_pred EEEecCCeEEEEEEEcCCHHHHHHHHH
Confidence 578899999999999999887766553
No 123
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=40.88 E-value=47 Score=23.81 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=29.0
Q ss_pred CceecCCCeE-----EEEEeccCCHHHHHHHHhhCCceEEEEE
Q psy477 1 MDSLSDKGIL-----YLLVIKENDPEDIIHCLSQYGFMGKTLL 38 (60)
Q Consensus 1 ~~~Ls~~G~~-----YLv~~~~N~p~ei~~~~~~~G~~~~vv~ 38 (60)
|+-|++.|++ .++.+..-+|.++++.+++.|-.+.++.
T Consensus 87 ~r~LaaEGILslkPdlvi~~~~aGP~~vl~qLraagV~vv~v~ 129 (300)
T COG4558 87 MRQLAAEGILSLKPDLVIGSEGAGPATVLDQLRAAGVPVVTVP 129 (300)
T ss_pred hhhcCcccceecCCCEEEeecccCcHHHHHHHHHcCCcEEEcC
Confidence 3456666665 3577788889999999999998887665
No 124
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=40.74 E-value=37 Score=18.45 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=16.0
Q ss_pred HHHHhhCCceEEEEEEEeeCCeEEEEEEEEeCCC
Q psy477 24 IHCLSQYGFMGKTLLTRQVPGEKLSVLKFTRSCD 57 (60)
Q Consensus 24 ~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~r~~~ 57 (60)
-+.++..||.+|.- .+--|.=|||.+.|-++
T Consensus 2 ~~~i~~~GY~~E~h---~V~T~DGYiL~l~RIp~ 32 (63)
T PF04083_consen 2 PELIEKHGYPCEEH---EVTTEDGYILTLHRIPP 32 (63)
T ss_dssp HHHHHHTT---EEE---EEE-TTSEEEEEEEE-S
T ss_pred HHHHHHcCCCcEEE---EEEeCCCcEEEEEEccC
Confidence 35677899999864 33344456666666443
No 125
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=40.66 E-value=1e+02 Score=19.93 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=32.5
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhCCceEEEEEE-EeeCCeEEEEEEEEeC
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQYGFMGKTLLT-RQVPGEKLSVLKFTRS 55 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~-rk~~~E~L~Vlr~~r~ 55 (60)
.|.-+++.+.. ..+...+++.||.++.++. ...++|.++.+.+--+
T Consensus 128 ~gi~~~v~V~~---~~~~r~l~r~G~~~~~lG~~~~~~~~~~~a~~i~v~ 174 (182)
T PF00765_consen 128 NGIRHIVGVVD---PAMERILRRAGWPVRRLGPPRSIGGERVVALLIPVS 174 (182)
T ss_dssp TT-SEEEEEEE---HHHHHHHHHCT-EEEESSEEEEETTEEEEEEEEE-S
T ss_pred CCCCEEEEEEC---hHHHHHHHHcCCceEECCCCeeeCCeEEEEEEEECC
Confidence 45555666554 3478888999999999988 7788999888776543
No 126
>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.
Probab=40.59 E-value=47 Score=22.47 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=22.4
Q ss_pred EEEEeccCCHHHHHHHHhhCCceEEEEEE
Q psy477 11 YLLVIKENDPEDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 11 YLv~~~~N~p~ei~~~~~~~G~~~~vv~~ 39 (60)
+++++...+-+++.+.+++.|..+.+|.+
T Consensus 258 ll~~v~~e~~~~~~~~~~~~g~~~~~IG~ 286 (287)
T cd02195 258 LLAAVPPEDAAALLALLKAGGPPAAIIGE 286 (287)
T ss_pred eEEEEcHHHHHHHHHHHHhCCCCeEEEEE
Confidence 56666666778899999999988887764
No 127
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=40.46 E-value=58 Score=17.55 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=19.9
Q ss_pred CCeEEEEEeccC-CHHHHHHHHhhCCceEEEE
Q psy477 7 KGILYLLVIKEN-DPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 7 ~G~~YLv~~~~N-~p~ei~~~~~~~G~~~~vv 37 (60)
-|.+++-+.... ..++.++.++++|..+|++
T Consensus 45 ~G~l~l~l~g~~~~~~~a~~~L~~~~v~vEvl 76 (76)
T PF09383_consen 45 FGILILELPGDDEEIEKAIAYLREQGVEVEVL 76 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHHHHHCCCeEEEC
Confidence 355555543221 2467888999999998874
No 128
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=40.02 E-value=57 Score=19.91 Aligned_cols=30 Identities=20% Similarity=0.486 Sum_probs=22.2
Q ss_pred EEEEeccCCHHHHHHHHhhCCceEEEEEEE
Q psy477 11 YLLVIKENDPEDIIHCLSQYGFMGKTLLTR 40 (60)
Q Consensus 11 YLv~~~~N~p~ei~~~~~~~G~~~~vv~~r 40 (60)
.+.++++.|-+.+.+.+.+.||.+..+++.
T Consensus 4 iiaIVqd~Da~~l~~~L~~~g~~~TkLsst 33 (109)
T PF06153_consen 4 IIAIVQDEDADDLSDALNENGFRVTKLSST 33 (109)
T ss_dssp EEEEEEHHHHHHHHHHHHHTT--EEEEEEE
T ss_pred EEEEEcHhhHHHHHHHHHHCCceEEEEecc
Confidence 355666778889999999999999888874
No 129
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=39.84 E-value=22 Score=22.96 Aligned_cols=34 Identities=12% Similarity=0.354 Sum_probs=24.2
Q ss_pred ecCCCeEEEE--EeccCCHHHHHHHHhhCCceEEEE
Q psy477 4 LSDKGILYLL--VIKENDPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 4 Ls~~G~~YLv--~~~~N~p~ei~~~~~~~G~~~~vv 37 (60)
|+.+|.++++ +.+.-+++.+++.+++.||.++-|
T Consensus 224 l~~~~~~fvvVGa~HL~G~~gvl~lLr~~Gy~V~~v 259 (259)
T PF01963_consen 224 LKEGGTVFVVVGAGHLPGEDGVLDLLRKKGYTVEPV 259 (259)
T ss_pred HhcCCCEEEEEcchhccchhhHHHHHHhCCceeecC
Confidence 4444344444 346678999999999999998743
No 130
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=39.83 E-value=42 Score=17.75 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.5
Q ss_pred CHHHHHHHHhhCCceEEE
Q psy477 19 DPEDIIHCLSQYGFMGKT 36 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~~~v 36 (60)
.++++.+.|.+.||.++.
T Consensus 20 ~~~ei~~~L~~lg~~~~~ 37 (71)
T smart00874 20 SAEEIEEILKRLGFEVEV 37 (71)
T ss_pred CHHHHHHHHHHCCCeEEe
Confidence 478999999999999864
No 131
>PF08168 NUC205: NUC205 domain; InterPro: IPR012584 This domain is found in a novel family of nucleolar proteins [].; GO: 0005634 nucleus
Probab=39.25 E-value=25 Score=18.45 Aligned_cols=14 Identities=36% Similarity=0.517 Sum_probs=10.6
Q ss_pred ecCCCeEEEEEecc
Q psy477 4 LSDKGILYLLVIKE 17 (60)
Q Consensus 4 Ls~~G~~YLv~~~~ 17 (60)
|+.+|++|.-++-.
T Consensus 22 L~SDGCiyetlip~ 35 (44)
T PF08168_consen 22 LSSDGCIYETLIPI 35 (44)
T ss_pred eccCCceeeeeccc
Confidence 67888999876644
No 132
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=38.93 E-value=1e+02 Score=19.49 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=28.2
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEE-Eee
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLT-RQV 42 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~-rk~ 42 (60)
..|.++|.+|+|=....+++.+.+.|...| .+..+-+ |++
T Consensus 93 ~~L~~g~~i~vVGEnk~GIkSa~K~L~~~~-~~~KiDSARhC 133 (155)
T PF08468_consen 93 SHLPPGTEIFVVGENKGGIKSAEKQLAPYG-KINKIDSARHC 133 (155)
T ss_dssp TTS-TT-EEEEEEEGGGTGGGHHHHHTTTS---EEE---TTE
T ss_pred HhCCCCCEEEEEecCcccHHHHHHHHHhhC-Ccceeeccccc
Confidence 357789999999999999999999999986 3333333 666
No 133
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=38.91 E-value=80 Score=20.20 Aligned_cols=29 Identities=28% Similarity=0.565 Sum_probs=24.1
Q ss_pred cCCCeEEEEEeccCCHHHHHHHHhhCCceEEE
Q psy477 5 SDKGILYLLVIKENDPEDIIHCLSQYGFMGKT 36 (60)
Q Consensus 5 s~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~v 36 (60)
++-|++-|++ .+|++-...+++.||-+++
T Consensus 40 ~dFGIiRmvV---~~~d~A~~~Lee~gF~Vr~ 68 (142)
T COG4747 40 GDFGIIRMVV---DRPDEAHSVLEEAGFTVRE 68 (142)
T ss_pred cCcceEEEEc---CChHHHHHHHHHCCcEEEe
Confidence 3568888887 6799999999999998875
No 134
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=38.47 E-value=1.2e+02 Score=20.35 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=21.7
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHh-hCCce
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLS-QYGFM 33 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~-~~G~~ 33 (60)
++|+|+|.+++-. ..+..+++.+.+. +.||.
T Consensus 232 ~~L~~gG~l~~e~-g~~q~~~~~~~~~~~~~~~ 263 (284)
T TIGR00536 232 DYLKPNGFLVCEI-GNWQQKSLKELLRIKFTWY 263 (284)
T ss_pred HhccCCCEEEEEE-CccHHHHHHHHHHhcCCCc
Confidence 4789999875544 3455778888887 46885
No 135
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=38.45 E-value=44 Score=22.90 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=26.7
Q ss_pred eec-CCCeEEEEEeccCCHHHHHHHHhhCCceEEEE
Q psy477 3 SLS-DKGILYLLVIKENDPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 3 ~Ls-~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv 37 (60)
.|| .|+.++-+...++..+++.+.|++.|+.+.++
T Consensus 259 ~mSGSGptvfaL~~~~~~a~~i~~~l~~~g~~~~~~ 294 (296)
T PRK14615 259 LMSGSGSSVFGLFRRRAQAEAAFEMLKGHNIRVYLH 294 (296)
T ss_pred EEeccCcceEEEeCCHHHHHHHHHHHhhhccceEEE
Confidence 356 36677777676777889999999988887765
No 136
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=38.27 E-value=66 Score=23.05 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=21.1
Q ss_pred ceecCCCeEEEEEec--------------------cCCHHHHHHHHhhCCceEE
Q psy477 2 DSLSDKGILYLLVIK--------------------ENDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~--------------------~N~p~ei~~~~~~~G~~~~ 35 (60)
+.|+|+|.+++--.. ...++++.+.|++.||...
T Consensus 357 r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i 410 (475)
T PLN02336 357 KWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDV 410 (475)
T ss_pred HHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeee
Confidence 468999998765321 1234555666666677654
No 137
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=38.13 E-value=1.1e+02 Score=19.67 Aligned_cols=38 Identities=8% Similarity=0.071 Sum_probs=27.6
Q ss_pred ccCCHHHHHHHHhhCCc--eEEEEEEEeeCCeEEEEEEEE
Q psy477 16 KENDPEDIIHCLSQYGF--MGKTLLTRQVPGEKLSVLKFT 53 (60)
Q Consensus 16 ~~N~p~ei~~~~~~~G~--~~~vv~~rk~~~E~L~Vlr~~ 53 (60)
.-+++.++.+.+.+.|+ +..++.-++++.+.=.|.+..
T Consensus 163 ~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~ 202 (229)
T TIGR01465 163 SAHILDKVVKELIEGGYSEDTPVAVVYRATWPDEKIVRGT 202 (229)
T ss_pred cHHHHHHHHHHHHHcCcCCCCcEEEEEeCCCCCcEEEEEE
Confidence 33679999999999998 455677777776666665543
No 138
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=38.07 E-value=79 Score=22.17 Aligned_cols=34 Identities=12% Similarity=0.329 Sum_probs=30.1
Q ss_pred ecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEE
Q psy477 4 LSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv 37 (60)
-+|+|..+-+..++.+.++..+..++.||++=.+
T Consensus 76 v~pGGtlfe~a~~~~kvdeyl~e~~~lGfe~iEI 109 (258)
T COG1809 76 VFPGGTLFEIAYSQDKVDEYLNEAKELGFEAIEI 109 (258)
T ss_pred ecCCceEEEeehhcccHHHHHHHHHHcCccEEEe
Confidence 4799999999999999999999999999986544
No 139
>PRK10637 cysG siroheme synthase; Provisional
Probab=38.04 E-value=1e+02 Score=22.46 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=33.2
Q ss_pred CCCeEEEEEeccCCHHHHHHHHhhCCc--eEEEEEEEeeCCeEEEEEEE
Q psy477 6 DKGILYLLVIKENDPEDIIHCLSQYGF--MGKTLLTRQVPGEKLSVLKF 52 (60)
Q Consensus 6 ~~G~~YLv~~~~N~p~ei~~~~~~~G~--~~~vv~~rk~~~E~L~Vlr~ 52 (60)
.++...++.-..+.|.+|.+.+.+.|+ ...++.-++++.+.=.|.+.
T Consensus 373 ~~~~t~Vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~ 421 (457)
T PRK10637 373 AEKQTLVFYMGLNQAATIQQKLIEHGMPADMPVALVENGTSVTQRVVSG 421 (457)
T ss_pred CCCCeEEEECCHhhHHHHHHHHHhcCCCCCCcEEEEEeCCCCCcEEEEE
Confidence 334456677778889999999998898 44466667776666555554
No 140
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=38.01 E-value=60 Score=22.26 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.0
Q ss_pred CHHHHHHHHhhCCceEEEEEEEee
Q psy477 19 DPEDIIHCLSQYGFMGKTLLTRQV 42 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~~~vv~~rk~ 42 (60)
||+++++.|-+.||++-||..-..
T Consensus 123 d~~ell~e~~~~Gf~~~Iv~Vsa~ 146 (223)
T COG2102 123 DPEELLEEMVEAGFEAIIVAVSAE 146 (223)
T ss_pred CHHHHHHHHHHcCCeEEEEEEecc
Confidence 899999999999999998876444
No 141
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=37.98 E-value=47 Score=23.45 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=30.1
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEee
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQV 42 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~ 42 (60)
..|.|+|.++++-...-+++.+.+.+++.+-..++-.-|++
T Consensus 100 ~~l~~g~~i~~~G~~~~g~~s~~k~~~~~~~~~~~~~ar~~ 140 (342)
T PRK09489 100 SLLPVGTDIFVVGENRSGVRSAEKMLADYAPLNKIDSARRC 140 (342)
T ss_pred HhCCCCCEEEEEEeccccHHHHHHHHHHhcCccccccceeE
Confidence 35789999999999888899999999887533333333443
No 142
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=37.94 E-value=69 Score=17.29 Aligned_cols=19 Identities=37% Similarity=0.711 Sum_probs=14.6
Q ss_pred CHHHHHHHHhhCCceEEEE
Q psy477 19 DPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~~~vv 37 (60)
.++++.+.+.+.||.++..
T Consensus 20 ~~~~i~~~L~~lg~~~~~~ 38 (70)
T PF03484_consen 20 SPEEIIKILKRLGFKVEKI 38 (70)
T ss_dssp -HHHHHHHHHHTT-EEEE-
T ss_pred CHHHHHHHHHHCCCEEEEC
Confidence 4889999999999998864
No 143
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=37.90 E-value=59 Score=21.35 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=21.4
Q ss_pred ecCCCe---EEEEEeccCCHHHHHHHHhh
Q psy477 4 LSDKGI---LYLLVIKENDPEDIIHCLSQ 29 (60)
Q Consensus 4 Ls~~G~---~YLv~~~~N~p~ei~~~~~~ 29 (60)
.||=|| |||.++-..+-++|++.++.
T Consensus 77 ~SPMGCrTGFYm~l~G~~~~~~i~~~~~~ 105 (161)
T COG1854 77 ISPMGCRTGFYMILIGTPTSQDIADVLEA 105 (161)
T ss_pred ecCcccccceEEEEECCCCHHHHHHHHHH
Confidence 577665 89999999999999887765
No 144
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=37.82 E-value=52 Score=19.13 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.4
Q ss_pred ccCCHHHHHHHHhhCCceEEEEEE
Q psy477 16 KENDPEDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 16 ~~N~p~ei~~~~~~~G~~~~vv~~ 39 (60)
.+=++++|....++.|+.+++|-+
T Consensus 53 e~id~~~i~~fC~~~gy~~~iv~~ 76 (86)
T PF11360_consen 53 EEIDPEEIEEFCRSAGYEYEIVPP 76 (86)
T ss_pred EEECHHHHHHHHHHCCceEEEECC
Confidence 344789999999999999998754
No 145
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=37.80 E-value=39 Score=21.36 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=17.6
Q ss_pred HHHHHHhhCCceEEEEEEEe
Q psy477 22 DIIHCLSQYGFMGKTLLTRQ 41 (60)
Q Consensus 22 ei~~~~~~~G~~~~vv~~rk 41 (60)
.|+..|+..||++.++.++-
T Consensus 3 ~v~~~Lr~~Gy~AaiCkS~W 22 (131)
T TIGR01615 3 IVMSLLRSLGYDAAICKSKW 22 (131)
T ss_pred hHHHHHHHCCCCeeeEEeec
Confidence 57889999999999999864
No 146
>COG4803 Predicted membrane protein [Function unknown]
Probab=37.68 E-value=74 Score=21.00 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=25.4
Q ss_pred eecCCCeEEEEEeccCCHHHHHHHHhhCCce
Q psy477 3 SLSDKGILYLLVIKENDPEDIIHCLSQYGFM 33 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~ 33 (60)
-+-|++..+.|+++.--|+.+.+.++..|..
T Consensus 112 ti~pG~sALFvLi~k~t~DKVl~~~~g~~g~ 142 (170)
T COG4803 112 TIQPGSSALFVLISKMTEDKVLADLSGFGGT 142 (170)
T ss_pred hcCCCCeEEEEEeeccchHHHHHHhhccCCE
Confidence 3568999999999999999999988775543
No 147
>KOG0132|consensus
Probab=37.37 E-value=67 Score=26.16 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=30.8
Q ss_pred cCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEE
Q psy477 5 SDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTR 40 (60)
Q Consensus 5 s~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~r 40 (60)
-++||+|++....-+-+.++..|++.++.-..|.-+
T Consensus 455 ~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 455 PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 379999999999999999999999988777766443
No 148
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=37.02 E-value=71 Score=17.18 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=23.9
Q ss_pred ecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEE
Q psy477 4 LSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv 37 (60)
|++|..+-+++-...-.+.|-+.+++.|+++..+
T Consensus 23 l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~ 56 (69)
T cd03422 23 LKPGEILEVISDCPQSINNIPIDARNHGYKVLAI 56 (69)
T ss_pred CCCCCEEEEEecCchHHHHHHHHHHHcCCEEEEE
Confidence 4566666666655555777888889999987643
No 149
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=36.60 E-value=46 Score=17.99 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=21.2
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhCCceEEEEEE
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~ 39 (60)
+|.+.+-+.....+.+|++.+.+.|. ..-...
T Consensus 40 ~~~~~i~l~~~~~~~~ll~~l~~~g~-I~~f~~ 71 (84)
T PF13732_consen 40 DGKLRIKLEDEETANELLQELIEKGI-IRSFEE 71 (84)
T ss_pred CcEEEEEECCcccHHHHHHHHHhCCC-eeEEEE
Confidence 55556666666678888888888776 544333
No 150
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=36.56 E-value=1e+02 Score=21.28 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=31.7
Q ss_pred eecCCCeEEEEEec----c-CCHHHH----HHHHhhCCceEE-EEEEEeeCCeEEEEEEEEe
Q psy477 3 SLSDKGILYLLVIK----E-NDPEDI----IHCLSQYGFMGK-TLLTRQVPGEKLSVLKFTR 54 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~----~-N~p~ei----~~~~~~~G~~~~-vv~~rk~~~E~L~Vlr~~r 54 (60)
.|.++|.+.+.+=. . -+|++| ++.|++.||+.. .+.=..+..-|..|+--++
T Consensus 167 fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~y~ 228 (229)
T PF01269_consen 167 FLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGRYR 228 (229)
T ss_dssp HEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEEE-
T ss_pred hccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEEec
Confidence 58889987766522 1 247766 466677799974 4443566666766664443
No 151
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=36.38 E-value=35 Score=24.99 Aligned_cols=33 Identities=18% Similarity=-0.083 Sum_probs=25.8
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhC-CceE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQY-GFMG 34 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~-G~~~ 34 (60)
++|+|+|.+++.+-..+-.+..++.+.+. ++..
T Consensus 223 RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 223 RVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred HHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 57999999999987777777777877765 4444
No 152
>KOG4644|consensus
Probab=36.04 E-value=61 Score=25.77 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=29.3
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhC-CceEEEEEEEeeCCeEEEE
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQY-GFMGKTLLTRQVPGEKLSV 49 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~-G~~~~vv~~rk~~~E~L~V 49 (60)
+|.+||++.+-..+++|...+.+. ||.--.+..--+.-|.++|
T Consensus 899 GGFiYLl~kEpqqkeaiEa~Lak~eg~gN~s~Hlieid~egl~i 942 (948)
T KOG4644|consen 899 GGFIYLLIKEPQQKEAIEAFLAKNEGFGNMSCHLIEIDLEGLFI 942 (948)
T ss_pred CcEEEEEecCCCCHHHHHHhhccCCCcCceeEEEEEecCCcchH
Confidence 689999999988999999888664 5543333333444555544
No 153
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.55 E-value=71 Score=16.77 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=11.6
Q ss_pred HHHHHHHHhhCCceE
Q psy477 20 PEDIIHCLSQYGFMG 34 (60)
Q Consensus 20 p~ei~~~~~~~G~~~ 34 (60)
.+++.+.|++.||.+
T Consensus 52 ~~~i~~~L~~~G~~~ 66 (68)
T cd04885 52 LAELKERLEALGYPY 66 (68)
T ss_pred HHHHHHHHHHcCCCc
Confidence 566778888889875
No 154
>KOG2997|consensus
Probab=35.42 E-value=43 Score=24.58 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=19.9
Q ss_pred CCCeEEEEEeccCCHHHHHHHHhh
Q psy477 6 DKGILYLLVIKENDPEDIIHCLSQ 29 (60)
Q Consensus 6 ~~G~~YLv~~~~N~p~ei~~~~~~ 29 (60)
|+|.|.++.+++ .|.+|++.|..
T Consensus 230 P~G~~l~~~Ssd-EP~dvVk~~s~ 252 (366)
T KOG2997|consen 230 PDGHVLMLTSSD-EPQDVVKRLST 252 (366)
T ss_pred CCCcEEEEeCCc-ChHHHHHhhhh
Confidence 899998888776 79999999976
No 155
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=35.41 E-value=68 Score=21.91 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=29.6
Q ss_pred EEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEE
Q psy477 10 LYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSV 49 (60)
Q Consensus 10 ~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~V 49 (60)
.+|+++..++.+++.+.+++.|..+.+|++-.- ...+.|
T Consensus 265 ~ll~tv~~~~~~~~~~~l~~~gi~~~~IG~vt~-~~~~~l 303 (313)
T cd02203 265 RMLLVVPPEDLEEFLAICKKEDLEAAVIGEVTD-DGRLRL 303 (313)
T ss_pred cEEEEECHHHHHHHHHHHHHCCCCEEEEEEECC-CCeEEE
Confidence 477788888889999999999988888887432 344444
No 156
>PRK03612 spermidine synthase; Provisional
Probab=35.41 E-value=36 Score=25.33 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=22.0
Q ss_pred ceecCCCeEEEEEecc----CCHHHHHHHHhhCCceE
Q psy477 2 DSLSDKGILYLLVIKE----NDPEDIIHCLSQYGFMG 34 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~----N~p~ei~~~~~~~G~~~ 34 (60)
+.|+|+|++.+-..+. ....++.+.+++.||.+
T Consensus 403 ~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 403 RRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred HhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 5799999977643322 22346778888889943
No 157
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=35.39 E-value=49 Score=21.46 Aligned_cols=15 Identities=7% Similarity=0.215 Sum_probs=11.3
Q ss_pred ceecCCCeEEEEEec
Q psy477 2 DSLSDKGILYLLVIK 16 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~ 16 (60)
++|+|+|.+++....
T Consensus 128 ~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 128 RVVRPGGVVAFTTLV 142 (251)
T ss_pred HHcCCCeEEEEEeCC
Confidence 478999998877533
No 158
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=35.26 E-value=60 Score=21.94 Aligned_cols=32 Identities=16% Similarity=0.380 Sum_probs=25.1
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhC--CceEEEEEE
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQY--GFMGKTLLT 39 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~--G~~~~vv~~ 39 (60)
.|. +|+++..++.+++.+.+++. |..+.++.+
T Consensus 259 ~G~-ll~tv~~~~~~~i~~~l~~~~~gi~~~vIG~ 292 (293)
T cd02197 259 EGK-FVAIVPPEDAEEVLEALRSHPLGKEAAIIGE 292 (293)
T ss_pred CCc-EEEEECHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 354 67777777788999999988 998888764
No 159
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=35.14 E-value=1.3e+02 Score=20.85 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=21.6
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCceE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMG 34 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~ 34 (60)
++|+|+|.+++=+ -++.+++.+.+.+.||..
T Consensus 251 ~~L~pgG~l~~E~--g~~~~~~~~~~~~~~~~~ 281 (307)
T PRK11805 251 DYLTEDGVLVVEV--GNSRVHLEEAYPDVPFTW 281 (307)
T ss_pred HhcCCCCEEEEEE--CcCHHHHHHHHhhCCCEE
Confidence 4789999877643 234667888887777654
No 160
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=35.01 E-value=19 Score=22.29 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=18.6
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHH-HhhCC-ceE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHC-LSQYG-FMG 34 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~-~~~~G-~~~ 34 (60)
++|+|+|.+|+-+........+... .+..| |..
T Consensus 44 rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g~~~~ 78 (231)
T PF01555_consen 44 RVLKPGGSIFIFIDDREIAGFLFELALEIFGGFFL 78 (231)
T ss_dssp HHEEEEEEEEEEE-CCEECTHHHHHHHHHHTT-EE
T ss_pred hhcCCCeeEEEEecchhhhHHHHHHHHHHhhhhhe
Confidence 5799999998877665544313333 33335 653
No 161
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=34.99 E-value=40 Score=20.17 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=24.5
Q ss_pred EeccCCHHHHHHHHhhCCceEEEEEEEeeCC
Q psy477 14 VIKENDPEDIIHCLSQYGFMGKTLLTRQVPG 44 (60)
Q Consensus 14 ~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~ 44 (60)
++..-..++|.+.+++.|+++.+.-+.+.+.
T Consensus 28 aV~~P~~~ei~~a~~~LGl~~~v~~dk~yPr 58 (93)
T COG1400 28 AVENPSLEEIAEALRELGLKPKVERDKKYPR 58 (93)
T ss_pred cccCCCHHHHHHHHHHcCCCeeechhhcCCC
Confidence 3444568999999999999998777776665
No 162
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=34.86 E-value=1.2e+02 Score=19.54 Aligned_cols=46 Identities=9% Similarity=0.214 Sum_probs=29.5
Q ss_pred cCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEE
Q psy477 5 SDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLK 51 (60)
Q Consensus 5 s~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr 51 (60)
+..+.+-++.... ++.++.+.+.+.|+...++.-++++.+.=.|..
T Consensus 165 ~~~~~vvil~~~~-~~~~i~~~L~~~g~~~~v~v~e~l~~~~E~i~~ 210 (230)
T TIGR01467 165 AEFDTVVLMKVGR-NLPQIKEALAKLGRLDAAVVVERATMPDEKIVD 210 (230)
T ss_pred ccCCeEEEEecCC-CHHHHHHHHHHcCCcccEEEEEECCCCCcEEEc
Confidence 4455554444444 577899999988886566666777755544443
No 163
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=34.62 E-value=56 Score=22.54 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=20.6
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhCC
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQYG 31 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~G 31 (60)
||++|+|=-+ ++++++++.|+++-
T Consensus 205 GGRvffv~~~-~~l~~~i~yLE~~p 228 (232)
T TIGR01204 205 GGRVFFVSRK-NELSEYIHCLEQKP 228 (232)
T ss_pred CCEEEEEeCC-CCHHHHHHHHhcCc
Confidence 7999999876 69999999998754
No 164
>PRK04457 spermidine synthase; Provisional
Probab=34.59 E-value=92 Score=20.95 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=19.6
Q ss_pred ceecCCCeEEEEEeccCC-HHHHHHHHhhCCce
Q psy477 2 DSLSDKGILYLLVIKEND-PEDIIHCLSQYGFM 33 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~-p~ei~~~~~~~G~~ 33 (60)
+.|+|+|++.+-+...+. ..++++.+++. |.
T Consensus 165 ~~L~pgGvlvin~~~~~~~~~~~l~~l~~~-F~ 196 (262)
T PRK04457 165 NALSSDGIFVVNLWSRDKRYDRYLERLESS-FE 196 (262)
T ss_pred HhcCCCcEEEEEcCCCchhHHHHHHHHHHh-cC
Confidence 579999998775544332 35566666553 54
No 165
>PF05166 YcgL: YcgL domain; InterPro: IPR007840 This family of proteins formerly called DUF709 includes the Escherichia coli gene ycgL. Homologues of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure []. The proteins in this entry are functionally uncharacterised.; PDB: 2H7A_A.
Probab=34.57 E-value=38 Score=19.44 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=14.0
Q ss_pred cCCHHHHHHHHhhCCceE
Q psy477 17 ENDPEDIIHCLSQYGFMG 34 (60)
Q Consensus 17 ~N~p~ei~~~~~~~G~~~ 34 (60)
.-|+++|++.+.++||--
T Consensus 52 ~~d~~~V~~~l~~~GfyL 69 (74)
T PF05166_consen 52 RADAEKVLAALEEQGFYL 69 (74)
T ss_dssp SS-HHHHHHHHHHTSEEE
T ss_pred cCCHHHHHHHHHhCCEEE
Confidence 457899999999999864
No 166
>PHA02591 hypothetical protein; Provisional
Probab=34.56 E-value=73 Score=18.78 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhCCceEEEE
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv 37 (60)
+|+-|.+-+++ |.-.+.+.|.+.||..+.|
T Consensus 36 ~~~ryfi~~~d-d~~~vA~eL~eqGlSqeqI 65 (83)
T PHA02591 36 GQTRYFVESED-DLISVTHELARKGFTVEKI 65 (83)
T ss_pred CCEEEEEeccc-hHHHHHHHHHHcCCCHHHH
Confidence 68888876554 7888899999999875543
No 167
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=34.52 E-value=1.2e+02 Score=20.66 Aligned_cols=51 Identities=6% Similarity=0.051 Sum_probs=34.5
Q ss_pred ecCCCeEEEEEeccCCH----HHHHHHHhhCCceEEEEEEEeeCCeEEEEEEEEe
Q psy477 4 LSDKGILYLLVIKENDP----EDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTR 54 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p----~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~r 54 (60)
..|+|++.+|-+--.++ .+|...+.+.|-..-.-.+-+..||+--++.+..
T Consensus 90 ~gP~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~kG~i~~~~ 144 (238)
T TIGR01033 90 YAPGGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSRKGVIEVPK 144 (238)
T ss_pred EcCCceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeecceEEEECC
Confidence 45999988876655554 4556666676655433345577899988888863
No 168
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=34.11 E-value=76 Score=16.63 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=21.0
Q ss_pred ecCCCeEEEEEeccCCHHHHHHHHhh
Q psy477 4 LSDKGILYLLVIKENDPEDIIHCLSQ 29 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p~ei~~~~~~ 29 (60)
|+++.-++|.-+..++.++|.+.+++
T Consensus 43 lT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 43 LTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp EETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred ECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 56777788888888889999888765
No 169
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=33.64 E-value=53 Score=21.36 Aligned_cols=26 Identities=35% Similarity=0.620 Sum_probs=20.7
Q ss_pred ecCCCe---EEEEEeccCCHHHHHHHHhh
Q psy477 4 LSDKGI---LYLLVIKENDPEDIIHCLSQ 29 (60)
Q Consensus 4 Ls~~G~---~YLv~~~~N~p~ei~~~~~~ 29 (60)
.||=|| |||++.-+-++++|++.+++
T Consensus 77 ~sPMGCrTGFYli~~g~~~~~~i~~l~~~ 105 (158)
T PRK02260 77 ISPMGCRTGFYLILIGTPDEEDVADALKA 105 (158)
T ss_pred ECCCccccccEEEEeCCCCHHHHHHHHHH
Confidence 456555 79999988889999988876
No 170
>PRK11524 putative methyltransferase; Provisional
Probab=33.56 E-value=36 Score=23.01 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=17.9
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCce
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFM 33 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~ 33 (60)
++|+|+|.+|+...... ... ...+.+.||.
T Consensus 68 rvLK~~G~i~i~~~~~~-~~~-~~~~~~~~f~ 97 (284)
T PRK11524 68 RVLKKQGTMYIMNSTEN-MPF-IDLYCRKLFT 97 (284)
T ss_pred HHhCCCcEEEEEcCchh-hhH-HHHHHhcCcc
Confidence 57999999999754332 222 3334445653
No 171
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=33.56 E-value=78 Score=20.09 Aligned_cols=32 Identities=6% Similarity=0.099 Sum_probs=19.1
Q ss_pred ceecCCCeEEEEEe-ccC------------CHHHHHHHHhhCCceEE
Q psy477 2 DSLSDKGILYLLVI-KEN------------DPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~-~~N------------~p~ei~~~~~~~G~~~~ 35 (60)
+.|+|+|.++++.. ..+ .++|+.+.++ ||+..
T Consensus 122 ~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~ 166 (197)
T PRK11207 122 RCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMV 166 (197)
T ss_pred HHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEE
Confidence 46899999765542 211 2456666665 77643
No 172
>COG3735 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.36 E-value=58 Score=23.30 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=24.7
Q ss_pred ecCCCeEEEEEe--ccCCHHHHHHHHhhCCceEEE
Q psy477 4 LSDKGILYLLVI--KENDPEDIIHCLSQYGFMGKT 36 (60)
Q Consensus 4 Ls~~G~~YLv~~--~~N~p~ei~~~~~~~G~~~~v 36 (60)
+.++|..++++- +.-+|+.+.+.|++.||.+.-
T Consensus 263 ~l~~G~~fvaVGAlHL~G~e~L~e~Lrk~g~t~tr 297 (299)
T COG3735 263 LLQGGRYFVAVGALHLPGPEGLVELLRKDGFTVTR 297 (299)
T ss_pred ccCCCCEEEEeccccccCcccHHHHHHHcCCeeee
Confidence 446676555543 456799999999999998764
No 173
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=33.27 E-value=1.2e+02 Score=23.21 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=30.8
Q ss_pred ceecCCCeEEEEEeccCC--HHHHHHHHhhCCceEEEEEEEe--eCCeEEEEE
Q psy477 2 DSLSDKGILYLLVIKEND--PEDIIHCLSQYGFMGKTLLTRQ--VPGEKLSVL 50 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~--p~ei~~~~~~~G~~~~vv~~rk--~~~E~L~Vl 50 (60)
++|.|+|.+++ .++- .++|.+.+.+..|++.++-... ...|.|.|-
T Consensus 455 RILRP~G~~ii---RD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~ 504 (506)
T PF03141_consen 455 RILRPGGWVII---RDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILIC 504 (506)
T ss_pred hhcCCCceEEE---eccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEE
Confidence 58999998533 2321 5666677777889999877755 335776653
No 174
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=33.21 E-value=83 Score=16.85 Aligned_cols=35 Identities=17% Similarity=0.003 Sum_probs=24.3
Q ss_pred eecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEE
Q psy477 3 SLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv 37 (60)
-|++++++-+++-...-.++|-+..++.|+....+
T Consensus 22 ~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~ 56 (69)
T cd03420 22 KLQDGEQLEVKASDPGFARDAQAWCKSTGNTLISL 56 (69)
T ss_pred cCCCCCEEEEEECCccHHHHHHHHHHHcCCEEEEE
Confidence 35667766666554444688888999999887643
No 175
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=32.98 E-value=86 Score=16.95 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=24.3
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhCCceEEEE
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv 37 (60)
.||-+-+-+...|.+.+.+.+++.|...+-+
T Consensus 39 ~~CG~al~~~~~d~~~i~~~l~~~~i~~~~i 69 (73)
T PF11823_consen 39 AGCGLALRFEPEDLEKIKEILEENGIEYEGI 69 (73)
T ss_pred CCCCEEEEEChhhHHHHHHHHHHCCCCeeEE
Confidence 4677777778888999999999988776643
No 176
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=32.83 E-value=28 Score=22.55 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=20.0
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhC--Cce
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQY--GFM 33 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~--G~~ 33 (60)
++|.|+|.+++.+=.+.=-+.+++.+.+. +|+
T Consensus 121 ~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~ 154 (195)
T PF02390_consen 121 RVLKPGGELYFATDVEEYAEWMLEQFEESHPGFE 154 (195)
T ss_dssp HHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEE
T ss_pred HHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeE
Confidence 46899999999853332244555666662 555
No 177
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=32.73 E-value=56 Score=22.23 Aligned_cols=28 Identities=11% Similarity=0.430 Sum_probs=23.1
Q ss_pred EEEEeccCCHHHHHHHHhhCCceEEEEE
Q psy477 11 YLLVIKENDPEDIIHCLSQYGFMGKTLL 38 (60)
Q Consensus 11 YLv~~~~N~p~ei~~~~~~~G~~~~vv~ 38 (60)
+|+++...+.+++.+.+++.|..+.+|+
T Consensus 255 ll~~v~~~~~~~v~~~l~~~gi~~~~IG 282 (283)
T cd02192 255 FLLTARPENADEVVAVFAAVGITAAVIG 282 (283)
T ss_pred eEEEECHHhHHHHHHHHHHcCCcEEEeC
Confidence 6777777778899999999999887765
No 178
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=32.62 E-value=88 Score=17.53 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=23.3
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhCCceEE
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~G~~~~ 35 (60)
++-++=|+..-.|.++.++.+++.|+...
T Consensus 66 ~~gi~Hia~~v~D~d~~~~~l~~~G~~~~ 94 (109)
T PF13669_consen 66 GGGIHHIAFEVDDLDAAIARLEAQGFRVL 94 (109)
T ss_dssp SSEEEEEEEEESHHHHHHHHHHHTTECEE
T ss_pred CCCEEEEEEEeCCHHHHHHHHHHCCCEEc
Confidence 44566677777889999999999998854
No 179
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=32.51 E-value=75 Score=22.03 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=22.1
Q ss_pred ceecCCCeEEEEEeccCC---------------HHHHHHHHhhCCceEE
Q psy477 2 DSLSDKGILYLLVIKEND---------------PEDIIHCLSQYGFMGK 35 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~---------------p~ei~~~~~~~G~~~~ 35 (60)
+.|.|+|+ |+|.-..-+ |.-|++..++.||.-+
T Consensus 154 ~~LKPGGv-~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ 201 (238)
T COG4798 154 KALKPGGV-YLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLE 201 (238)
T ss_pred HhcCCCcE-EEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceee
Confidence 35889998 666654443 5667777777787643
No 180
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=31.79 E-value=46 Score=21.38 Aligned_cols=27 Identities=15% Similarity=0.383 Sum_probs=22.6
Q ss_pred eecCCCeEEEEEeccCCHHHHHHHHhh
Q psy477 3 SLSDKGILYLLVIKENDPEDIIHCLSQ 29 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~~N~p~ei~~~~~~ 29 (60)
|...-|..|++..+-++.++|+..|++
T Consensus 108 Y~~kFGfpFii~v~g~s~~~IL~~l~~ 134 (166)
T PRK13798 108 YEEKFGFVFLICATGRSADEMLAALQQ 134 (166)
T ss_pred HHHhCCCeEEEeeCCCCHHHHHHHHHH
Confidence 344569999999999999999998865
No 181
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=31.78 E-value=92 Score=21.93 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=16.2
Q ss_pred ceecCCCeEEEEEeccCCH
Q psy477 2 DSLSDKGILYLLVIKENDP 20 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p 20 (60)
+.|.|+|.+.|-.+...++
T Consensus 164 ~~L~~~G~~llh~I~~~~~ 182 (283)
T COG2230 164 ALLKPGGRMLLHSITGPDQ 182 (283)
T ss_pred hhcCCCceEEEEEecCCCc
Confidence 4689999999999988883
No 182
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=31.39 E-value=69 Score=19.92 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=12.5
Q ss_pred ceecCCCeEEEEEeccCC
Q psy477 2 DSLSDKGILYLLVIKEND 19 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~ 19 (60)
+.|+|+|.+++.......
T Consensus 123 ~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 123 RVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred HHcCCCcEEEEEeCCccC
Confidence 468899998876544433
No 183
>PF02664 LuxS: S-Ribosylhomocysteinase (LuxS); InterPro: IPR003815 In bacteria, the regulation of gene expression in response to changes in cell density is called quorum sensing. Quorum-sensing bacteria produce, release, and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. For example, enteric bacteria use quorum sensing to regulate several traits that allow them to establish and maintain infection in their host, including motility, biofilm formation, and virulence-specific genes []. The LuxS/AI-2 system is one of several quorum sensing mechanisms. AI-2 (autoinducer-2) is a signalling molecule that functions in interspecies communication by regulating niche-specific genes with diverse functions in various bacteria, often in response to population density. LuxS (S-ribosylhomocysteinase; 4.4.1.21 from EC) is an autoinducer-production protein that has a metabolic function as a component of the activated methyl cycle. LuxS converts S-ribosylhomocysteine to homocysteine and 4,5-dihydroxy-2,3-pentanedione (DPD); DPD can then spontaneously cyclise to active AI-2 [, ]. LuxS is a homodimeric iron-dependent metalloenzyme containing two identical tetrahedral metal-binding sites similar to those found in peptidases and amidases []. ; GO: 0005506 iron ion binding, 0009372 quorum sensing; PDB: 1J6X_B 1VGX_A 1INN_B 1VJE_B 1J6V_A 1VH2_A 1J6W_B 1JOE_B 1J98_A 1IE0_A ....
Probab=31.26 E-value=69 Score=20.85 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=17.6
Q ss_pred cCCCe---EEEEEeccCCHHHHHHHHhh
Q psy477 5 SDKGI---LYLLVIKENDPEDIIHCLSQ 29 (60)
Q Consensus 5 s~~G~---~YLv~~~~N~p~ei~~~~~~ 29 (60)
||=|| |||++.-+-++++|++.+++
T Consensus 78 gPMGCrTGFYli~~g~~~~~~i~~l~~~ 105 (157)
T PF02664_consen 78 GPMGCRTGFYLILWGDPSSEDIADLLKE 105 (157)
T ss_dssp EE-TTSSEEEEEEESS--HHHHHHHHHH
T ss_pred cCcccccccEEEEeCCCCHHHHHHHHHH
Confidence 45444 79999988889999888766
No 184
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=31.05 E-value=64 Score=22.24 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=24.3
Q ss_pred EEEEEeccCCHHHHHHHHhhCCceEEEEEE
Q psy477 10 LYLLVIKENDPEDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 10 ~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~ 39 (60)
-+|+++..++.+++.+.+++.|..+.+|.+
T Consensus 297 ~Ll~tv~~~~~~~l~~~l~~~g~~~~~IG~ 326 (327)
T PRK05385 297 GMVLIVPPEDADAALALLEAAGEDAWVIGR 326 (327)
T ss_pred cEEEEECHHHHHHHHHHHHhcCCCceEEEE
Confidence 377777777888999999999988877764
No 185
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=30.88 E-value=61 Score=16.37 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=11.9
Q ss_pred HHHHHHHhhCCceEE
Q psy477 21 EDIIHCLSQYGFMGK 35 (60)
Q Consensus 21 ~ei~~~~~~~G~~~~ 35 (60)
.|+.+.|++.||...
T Consensus 2 ~el~k~L~~~G~~~~ 16 (56)
T PF07927_consen 2 RELIKLLEKAGFEEV 16 (56)
T ss_dssp HHHHHHHHHTT-EEE
T ss_pred hHHHHHHHHCCCEEe
Confidence 578999999999866
No 186
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=30.75 E-value=36 Score=20.97 Aligned_cols=17 Identities=12% Similarity=0.133 Sum_probs=13.0
Q ss_pred ceecCCCeEEEEEeccC
Q psy477 2 DSLSDKGILYLLVIKEN 18 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N 18 (60)
++|+|+|.++++-....
T Consensus 69 rvLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 69 RVLKPGSRVSILDFNKS 85 (160)
T ss_pred HHcCcCeEEEEEECCCC
Confidence 57999999988765543
No 187
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=30.53 E-value=78 Score=16.33 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=24.3
Q ss_pred CHHHHHHHHhhCCceEEEEEEEeeCCeEEEE
Q psy477 19 DPEDIIHCLSQYGFMGKTLLTRQVPGEKLSV 49 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~V 49 (60)
|++++.+.+.+..|--++-.+|+.++ +|.|
T Consensus 35 ~~~~~~~~l~~~p~V~~v~V~r~~P~-~l~I 64 (69)
T PF08478_consen 35 DLKKIEQRLEKLPWVKSVSVSRRFPN-TLEI 64 (69)
T ss_dssp HHHHHHHCCCCTTTEEEEEEEEETTT-EEEE
T ss_pred CHHHHHHHHHcCCCEEEEEEEEeCCC-EEEE
Confidence 68888999988999999888888876 4443
No 188
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=30.37 E-value=1.8e+02 Score=20.46 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=22.0
Q ss_pred ceecCCCeEEEEEec----cC-------------------CHHHHHHHHhhCCceEE
Q psy477 2 DSLSDKGILYLLVIK----EN-------------------DPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~----~N-------------------~p~ei~~~~~~~G~~~~ 35 (60)
+.|.|+|.+++-..- .| .++++.+.+++.||..-
T Consensus 213 r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V 269 (314)
T TIGR00452 213 HQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENF 269 (314)
T ss_pred HhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEE
Confidence 578999999874321 11 25566677777788743
No 189
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=30.37 E-value=1.4e+02 Score=18.40 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=20.9
Q ss_pred cCCCeEEEEEeccCCHHHHHHHHhhCCce
Q psy477 5 SDKGILYLLVIKENDPEDIIHCLSQYGFM 33 (60)
Q Consensus 5 s~~G~~YLv~~~~N~p~ei~~~~~~~G~~ 33 (60)
..+.-++.++++-+|.++..+.+++.|+.
T Consensus 73 ~~~~g~~~~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 73 AGGEGLYGWALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp HT--EEEEEEEE-S-HHHHHHHHHTTT-E
T ss_pred cCCCCeEEEEEecCCHHHHHHHHHhcCCC
Confidence 34566788888889999999999999987
No 190
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.08 E-value=79 Score=15.65 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=12.9
Q ss_pred HHHHHHHHhhCCceEE
Q psy477 20 PEDIIHCLSQYGFMGK 35 (60)
Q Consensus 20 p~ei~~~~~~~G~~~~ 35 (60)
.+++++.+++.||.+.
T Consensus 57 l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 57 IEEIIAALREAGYDVR 72 (73)
T ss_pred HHHHHHHHHHcCCEEe
Confidence 3589999999999763
No 191
>PF04239 DUF421: Protein of unknown function (DUF421); InterPro: IPR007353 This family of uncharacterised proteins is known as YDFR family; PDB: 3C6F_D.
Probab=29.87 E-value=46 Score=19.45 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=11.4
Q ss_pred eecCCCeEEEEEeccCCHHH
Q psy477 3 SLSDKGILYLLVIKENDPED 22 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~~N~p~e 22 (60)
+|-|+|.++++.-..+.|..
T Consensus 51 ~lE~~G~lsv~~k~~~~~~~ 70 (99)
T PF04239_consen 51 VLEPNGQLSVIKKEDAQPVT 70 (99)
T ss_dssp EE-TTS-EEEEE-GGGS---
T ss_pred EECCCCCEEEEEcCCCCCCC
Confidence 57789999999888666554
No 192
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=29.82 E-value=1.8e+02 Score=21.42 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=32.0
Q ss_pred EEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEEEe
Q psy477 12 LLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTR 54 (60)
Q Consensus 12 Lv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~r 54 (60)
+.+-+..+.++.++.|++.|...++...++.+++ .+++|.|
T Consensus 315 ~rf~~~~~~~~~~~hl~~~g~~i~i~~~~~~~~~--~~v~f~k 355 (374)
T TIGR01209 315 LVFESEETAEEFLTHFEKLGVHIEIKDIEEIKDG--WRVTFKR 355 (374)
T ss_pred EEeCCHHHHHHHHHHHHHcCCeEEEeeehccCCc--EEEEEEE
Confidence 4556667788899999999999997777777776 6777766
No 193
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=29.80 E-value=57 Score=24.41 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=25.4
Q ss_pred CceecCC-CeEEEEEeccCCHHHHHHHHhhCCceE
Q psy477 1 MDSLSDK-GILYLLVIKENDPEDIIHCLSQYGFMG 34 (60)
Q Consensus 1 ~~~Ls~~-G~~YLv~~~~N~p~ei~~~~~~~G~~~ 34 (60)
+++|.|+ |.+-==.-.+.+.+.+++.|++.|+..
T Consensus 349 ~Dll~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~ 383 (435)
T COG0017 349 FDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDP 383 (435)
T ss_pred EeeecCCceeeecceeccccHHHHHHHHHHcCCCh
Confidence 4678887 554444455678999999999999764
No 194
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=29.21 E-value=0.38 Score=30.93 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=23.2
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCce
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFM 33 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~ 33 (60)
++|||+-.-+|=++++.+|..|-+..+.-|=.
T Consensus 60 ~vLsp~nleLl~~Ia~~~P~Si~ElAe~vgRd 91 (144)
T COG4190 60 RVLSPRNLELLELIAQEEPASINELAELVGRD 91 (144)
T ss_pred HHhChhHHHHHHHHHhcCcccHHHHHHHhCcc
Confidence 56788777777788888888887766665433
No 195
>PF03197 FRD2: Bacteriophage FRD2 protein; InterPro: IPR004885 This is group of bacteriophage proteins has no known function.
Probab=29.19 E-value=63 Score=19.71 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=14.6
Q ss_pred EEeccCCHHHHHHHHhh
Q psy477 13 LVIKENDPEDIIHCLSQ 29 (60)
Q Consensus 13 v~~~~N~p~ei~~~~~~ 29 (60)
+.+.+|+.++|++.+++
T Consensus 82 ciVde~NvdeIIeLl~k 98 (102)
T PF03197_consen 82 CIVDENNVDEIIELLQK 98 (102)
T ss_pred EEEccCCHHHHHHHHHH
Confidence 56778999999999886
No 196
>PRK02886 hypothetical protein; Provisional
Probab=29.08 E-value=1.2e+02 Score=17.97 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=28.5
Q ss_pred eecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEE
Q psy477 3 SLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~ 39 (60)
+-|.+-..-++=+.+++.+++++.+.+..|--.|..|
T Consensus 29 Y~Skr~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S 65 (87)
T PRK02886 29 YVSKRLKYAVLYCDMEQVEDIMNKLSSLPFVKRVEPS 65 (87)
T ss_pred EEeccccEEEEEECHHHHHHHHHHHhcCCCeeEEccc
Confidence 3455566566778888999999999999887776655
No 197
>PF09974 DUF2209: Uncharacterized protein conserved in archaea (DUF2209); InterPro: IPR014514 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.80 E-value=15 Score=23.23 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=14.4
Q ss_pred eecCCCeEEEEEeccCCHHHHHHHHhhCCce
Q psy477 3 SLSDKGILYLLVIKENDPEDIIHCLSQYGFM 33 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~ 33 (60)
+++++|-|| |.|+...+.|-+.-|+
T Consensus 72 IvaE~Gefy------n~p~w~v~s~l~~~fk 96 (128)
T PF09974_consen 72 IVAEKGEFY------NEPEWRVESILGREFK 96 (128)
T ss_pred EEeeccccc------cChHHHHHHHhccccc
Confidence 445555554 6666666666555554
No 198
>PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins.
Probab=28.76 E-value=77 Score=22.12 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=26.2
Q ss_pred CHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEEEeCC
Q psy477 19 DPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTRSC 56 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~r~~ 56 (60)
||.-+...+.. +.-+.++++.+|.-+|||..-++
T Consensus 92 DPr~ta~lF~~----A~cvGEk~i~gedCFvLkl~ad~ 125 (245)
T PF04788_consen 92 DPRSTANLFSN----AVCVGEKRINGEDCFVLKLEADP 125 (245)
T ss_pred ChhhHHHhhhh----ceEeeeeccCCcccEEEEeeCCH
Confidence 56665555544 67788999999999999988654
No 199
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=28.33 E-value=67 Score=16.48 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=13.9
Q ss_pred ccCCHHHHHHHHhhCCc
Q psy477 16 KENDPEDIIHCLSQYGF 32 (60)
Q Consensus 16 ~~N~p~ei~~~~~~~G~ 32 (60)
+.++|++|.+-+...|+
T Consensus 1 s~W~~~~V~~WL~~~~l 17 (64)
T PF00536_consen 1 SEWSVEDVSEWLKSLGL 17 (64)
T ss_dssp GGTSHHHHHHHHHHTTG
T ss_pred CCCCHHHHHHHHHHCCC
Confidence 45788999999988876
No 200
>PF05846 Chordopox_A15: Chordopoxvirus A15 protein; InterPro: IPR008445 This family consists of several Chordopoxvirus A15 like sequences.
Probab=28.03 E-value=47 Score=19.82 Aligned_cols=15 Identities=33% Similarity=0.762 Sum_probs=13.2
Q ss_pred CCeEEEEEeccCCHH
Q psy477 7 KGILYLLVIKENDPE 21 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ 21 (60)
+|-+|++...+|+|.
T Consensus 72 ~G~i~iLFe~~n~pp 86 (90)
T PF05846_consen 72 GGNIYILFERDNKPP 86 (90)
T ss_pred CCeEEEEEecCCCCC
Confidence 799999999999873
No 201
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=28.00 E-value=1.5e+02 Score=19.15 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=9.7
Q ss_pred ceecCCCeEEEEE
Q psy477 2 DSLSDKGILYLLV 14 (60)
Q Consensus 2 ~~Ls~~G~~YLv~ 14 (60)
+.|+|+|.+.+..
T Consensus 118 ~~LkpgG~~~~~~ 130 (258)
T PRK01683 118 SLLAPGGVLAVQM 130 (258)
T ss_pred HhcCCCcEEEEEC
Confidence 4689999887653
No 202
>PRK02302 hypothetical protein; Provisional
Probab=27.75 E-value=1.3e+02 Score=17.83 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=29.4
Q ss_pred eecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEe
Q psy477 3 SLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQ 41 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk 41 (60)
+-|.+-..-++=+.+++.+++++.+.+..|--+|..|-+
T Consensus 31 Y~Skk~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S~~ 69 (89)
T PRK02302 31 YHSKRSRYLVLYVNKEDVEQKLEELSKLKFVKKVRPSAI 69 (89)
T ss_pred EEeccccEEEEEECHHHHHHHHHHHhcCCCeeEEcccCc
Confidence 345556656677888899999999999988877766533
No 203
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=27.66 E-value=1.4e+02 Score=19.84 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=17.4
Q ss_pred eccCCHHHHHHHHhhCCceEE
Q psy477 15 IKENDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 15 ~~~N~p~ei~~~~~~~G~~~~ 35 (60)
++-+||++..+.+++.||...
T Consensus 83 ~~v~D~~~~~~il~~LGF~~~ 103 (178)
T COG1437 83 IEVSDVEKALEILKRLGFKEV 103 (178)
T ss_pred EEeCCHHHHHHHHHHcCCcee
Confidence 344699999999999999944
No 204
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=27.65 E-value=60 Score=20.68 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=22.4
Q ss_pred eecCCCeEEEEEeccCCHHHHHHHHhh
Q psy477 3 SLSDKGILYLLVIKENDPEDIIHCLSQ 29 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~~N~p~ei~~~~~~ 29 (60)
|...-|..|++..+-++.++|+..|++
T Consensus 103 Y~~kFGfpFii~v~g~s~~~IL~~l~~ 129 (158)
T TIGR03180 103 YEEKFGRIFLIRAAGRSAEEMLDALQA 129 (158)
T ss_pred HHHHCCCeEEEeeCCCCHHHHHHHHHH
Confidence 445679999999998889999998865
No 205
>COG3698 Predicted periplasmic protein [Function unknown]
Probab=27.43 E-value=39 Score=23.56 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=8.8
Q ss_pred eecCCCeEEEE
Q psy477 3 SLSDKGILYLL 13 (60)
Q Consensus 3 ~Ls~~G~~YLv 13 (60)
.|-|+|+|||=
T Consensus 119 ~l~PnGVFyl~ 129 (250)
T COG3698 119 FLLPNGVFYLG 129 (250)
T ss_pred eEcCCeeEEEc
Confidence 46799999984
No 206
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=27.38 E-value=72 Score=17.24 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.8
Q ss_pred CHHHHHHHHhhCCceEE
Q psy477 19 DPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~~~ 35 (60)
+.+++.+.|...||+..
T Consensus 33 d~~~l~~kL~~~Gy~Y~ 49 (55)
T PF14056_consen 33 DKEELEEKLASIGYEYD 49 (55)
T ss_pred CHHHHHHHHHHcCCeEc
Confidence 57899999999999865
No 207
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=27.32 E-value=60 Score=20.60 Aligned_cols=27 Identities=11% Similarity=0.321 Sum_probs=22.4
Q ss_pred eecCCCeEEEEEeccCCHHHHHHHHhh
Q psy477 3 SLSDKGILYLLVIKENDPEDIIHCLSQ 29 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~~N~p~ei~~~~~~ 29 (60)
|...-|.-|+|...-++.++|++.|++
T Consensus 103 Y~~kFGfpFvi~v~g~~~~~Il~~l~~ 129 (157)
T TIGR03164 103 YRARFGFPFIMAVKGKTKQSILAAFEA 129 (157)
T ss_pred HHHHCCCeeEEeeCCCCHHHHHHHHHH
Confidence 344569999999998899999998875
No 208
>PRK03926 mevalonate kinase; Provisional
Probab=27.29 E-value=1.7e+02 Score=19.60 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=17.7
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhCCce
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQYGFM 33 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~G~~ 33 (60)
+|++|.++- .++.+++.+.+++.++.
T Consensus 260 Gg~v~~l~~-~~~~~~~~~~~~~~~~~ 285 (302)
T PRK03926 260 GGCMVALAA-PEKQSEVATAIKIAGGK 285 (302)
T ss_pred CCEEEEEec-cccHHHHHHHHHhcCCe
Confidence 457666654 44688899888887654
No 209
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=27.22 E-value=1.1e+02 Score=22.17 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=22.7
Q ss_pred ceecCCCeEEEEEeccC---CHHHHHHHHhhC-CceE
Q psy477 2 DSLSDKGILYLLVIKEN---DPEDIIHCLSQY-GFMG 34 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N---~p~ei~~~~~~~-G~~~ 34 (60)
+.|.|+|.+..-+|+.+ +.+.|...++++ +|..
T Consensus 365 ~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~ 401 (445)
T PRK14904 365 SLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSA 401 (445)
T ss_pred HhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEE
Confidence 46899999999998886 333444556655 5654
No 210
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=27.22 E-value=1.8e+02 Score=20.16 Aligned_cols=19 Identities=16% Similarity=0.273 Sum_probs=14.1
Q ss_pred CHHHHHHHHhhCCceEEEE
Q psy477 19 DPEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~~~vv 37 (60)
.++++.+.|++.||....+
T Consensus 254 s~~~l~~~L~~aGF~~i~~ 272 (322)
T PRK15068 254 SVPALKNWLERAGFKDVRI 272 (322)
T ss_pred CHHHHHHHHHHcCCceEEE
Confidence 4567888889999985544
No 211
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=26.96 E-value=1.6e+02 Score=20.29 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=24.7
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhCCceE
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQYGFMG 34 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~G~~~ 34 (60)
.|+.++|+-..+.+.++.+.+...+|..
T Consensus 111 ~~~~rlILQPn~~~~~LR~~L~~~~~~I 138 (226)
T COG2384 111 KGVERLILQPNIHTYELREWLSANSYEI 138 (226)
T ss_pred cCcceEEECCCCCHHHHHHHHHhCCcee
Confidence 3678899999999999999999999873
No 212
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=26.87 E-value=1.2e+02 Score=16.52 Aligned_cols=17 Identities=12% Similarity=-0.021 Sum_probs=7.1
Q ss_pred CHHHHHHHHhhCCceEE
Q psy477 19 DPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~~~ 35 (60)
++..=++.....|...-
T Consensus 40 ~~~k~~~~a~~~g~p~~ 56 (94)
T PF03129_consen 40 SLGKQIKYADKLGIPFI 56 (94)
T ss_dssp THHHHHHHHHHTTESEE
T ss_pred chhHHHHHHhhcCCeEE
Confidence 34444444444444433
No 213
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=26.77 E-value=1.3e+02 Score=16.98 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=26.9
Q ss_pred ecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEE
Q psy477 4 LSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~ 39 (60)
-|.+-..-++=+.+++.+++++.+++..|--+|..|
T Consensus 26 ~Skk~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S 61 (71)
T PF09902_consen 26 VSKKMKYVVLYVNEEDVEEIIEKLKKLKFVKKVEPS 61 (71)
T ss_pred EECCccEEEEEECHHHHHHHHHHHhcCCCeeEEecc
Confidence 455555556667788899999999999887776554
No 214
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=26.74 E-value=1.1e+02 Score=23.72 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=26.2
Q ss_pred EEEEEeccCCHHHHHHHHhhCCceEEEEEEE
Q psy477 10 LYLLVIKENDPEDIIHCLSQYGFMGKTLLTR 40 (60)
Q Consensus 10 ~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~r 40 (60)
-+++++...+.+++.+.+++.|..+.+|++-
T Consensus 311 rml~~v~~~~~~~~~~~~~~~~~~~~vIG~v 341 (724)
T PRK01213 311 RMLLVVKPGKEEEVLAIFEKWDLDAAVIGEV 341 (724)
T ss_pred eEEEEECHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 4677777778899999999999999998884
No 215
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=26.28 E-value=59 Score=20.04 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=28.5
Q ss_pred ceecCCCeEEEEEeccCCHHHHHHHHhhCCce-EEEE---EEEeeCCeEEE
Q psy477 2 DSLSDKGILYLLVIKENDPEDIIHCLSQYGFM-GKTL---LTRQVPGEKLS 48 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~-~~vv---~~rk~~~E~L~ 48 (60)
..|+|+|.+.+-+.+....++++..++. .|. +.++ .+|....|.-.
T Consensus 127 ~~L~~gG~~v~K~~~~~~~~~~~~~l~~-~F~~v~~~Kp~~sr~~s~E~Yl 176 (181)
T PF01728_consen 127 ELLKPGGTFVIKVFKGPEIEELIYLLKR-CFSKVKIVKPPSSRSESSEEYL 176 (181)
T ss_dssp HHHCTTEEEEEEESSSTTSHHHHHHHHH-HHHHEEEEE-TTSBTTCBEEEE
T ss_pred hhhcCCCEEEEEeccCccHHHHHHHHHh-CCeEEEEEECcCCCCCccEEEE
Confidence 4588999988877775555688887777 443 2222 22455555533
No 216
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=26.24 E-value=2e+02 Score=19.05 Aligned_cols=35 Identities=9% Similarity=0.309 Sum_probs=24.6
Q ss_pred CCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEE
Q psy477 18 NDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKF 52 (60)
Q Consensus 18 N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~ 52 (60)
.++++|.+.+.+.|+.-.++.-++++.+.-.|...
T Consensus 184 ~~~~~i~~~L~~~g~~~~~~~v~~~~~~~E~i~~~ 218 (241)
T PRK05990 184 RNLDKVRRVLAALGLLDRALYVERATMANQRIVPL 218 (241)
T ss_pred CcHHHHHHHHHHcCCCCCEEEEEECCCCCeEEEEc
Confidence 67999999999998743333336777766666543
No 217
>PHA02119 hypothetical protein
Probab=26.12 E-value=81 Score=18.36 Aligned_cols=28 Identities=25% Similarity=0.517 Sum_probs=20.7
Q ss_pred HHHHHHHHhhCCceEEEEEEEeeCCeEEEEE
Q psy477 20 PEDIIHCLSQYGFMGKTLLTRQVPGEKLSVL 50 (60)
Q Consensus 20 p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vl 50 (60)
|.+|+..++..||++. +....+|...++
T Consensus 56 ~~divdylr~lgy~~~---~~s~rnes~i~v 83 (87)
T PHA02119 56 PKDIVDYLRSLGYDAK---SDSFRNESVITV 83 (87)
T ss_pred cHHHHHHHHHccchhc---cccccCceEEEE
Confidence 7899999999999866 345556665443
No 218
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=25.96 E-value=2e+02 Score=18.91 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=21.0
Q ss_pred eEEEEEeccCCHHHHHHHHhhCCceE
Q psy477 9 ILYLLVIKENDPEDIIHCLSQYGFMG 34 (60)
Q Consensus 9 ~~YLv~~~~N~p~ei~~~~~~~G~~~ 34 (60)
.-.+|+...+++..+.+.+.++||..
T Consensus 94 ~~~lILqP~~~~~~LR~~L~~~gf~I 119 (205)
T PF04816_consen 94 AKRLILQPNTHAYELRRWLYENGFEI 119 (205)
T ss_dssp --EEEEEESS-HHHHHHHHHHTTEEE
T ss_pred CCeEEEeCCCChHHHHHHHHHCCCEE
Confidence 34788899999999999999999884
No 219
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.93 E-value=77 Score=16.82 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=18.5
Q ss_pred CCHHHHHHHHh-hCCceEEEEEEEeeCCeEEEEE
Q psy477 18 NDPEDIIHCLS-QYGFMGKTLLTRQVPGEKLSVL 50 (60)
Q Consensus 18 N~p~ei~~~~~-~~G~~~~vv~~rk~~~E~L~Vl 50 (60)
+||+.|.+..+ +.|+. .++|.++++
T Consensus 52 ~~~~~ie~~AR~~lgm~--------~~~E~v~~~ 77 (80)
T PF04977_consen 52 NDPDYIEKVAREKLGMV--------KPGEIVFKI 77 (80)
T ss_pred CCHHHHHHHHHHHcCCc--------CCCCEEEeC
Confidence 78999998888 67875 247777654
No 220
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=25.93 E-value=68 Score=18.46 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=16.9
Q ss_pred CeEEEEEeccCC-HHHHHHHHhhCCceEE
Q psy477 8 GILYLLVIKEND-PEDIIHCLSQYGFMGK 35 (60)
Q Consensus 8 G~~YLv~~~~N~-p~ei~~~~~~~G~~~~ 35 (60)
..+++|.=..+. ++++.+.+++.|+.+.
T Consensus 31 ~~~~~lTNns~~s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 31 KPVVFLTNNSSRSREEYAKKLKKLGIPVD 59 (101)
T ss_dssp SEEEEEES-SSS-HHHHHHHHHHTTTT--
T ss_pred CCEEEEeCCCCCCHHHHHHHHHhcCcCCC
Confidence 345555422222 5899999999998854
No 221
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=25.88 E-value=1.4e+02 Score=21.00 Aligned_cols=29 Identities=10% Similarity=0.019 Sum_probs=23.5
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhCCceEE
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~G~~~~ 35 (60)
+|+++.++-.+++-+++.+.+++.|+..-
T Consensus 322 Gg~~ial~~~~~~~~~~~~~~~~~G~~~l 350 (358)
T TIGR01220 322 GDCGIAILDAEADITHVRQRWETAGILPL 350 (358)
T ss_pred cCEEEEEeCCchhHHHHHHHHHHCCCeEe
Confidence 67777777667788889999999997765
No 222
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=25.81 E-value=74 Score=17.84 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=11.1
Q ss_pred CCCeEEEEEeccCC
Q psy477 6 DKGILYLLVIKEND 19 (60)
Q Consensus 6 ~~G~~YLv~~~~N~ 19 (60)
.+|++|+++-+.|+
T Consensus 44 ~GGv~~I~I~K~dg 57 (66)
T PF15631_consen 44 LGGVFYIEIRKKDG 57 (66)
T ss_pred cCCeEEEEEEccCC
Confidence 47999999887764
No 223
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=25.69 E-value=1.7e+02 Score=18.16 Aligned_cols=46 Identities=9% Similarity=-0.016 Sum_probs=28.4
Q ss_pred CCCeEEEEEeccCCHHHHHHHHhhC--CceEEEEEEEeeCCeEEEEEEE
Q psy477 6 DKGILYLLVIKENDPEDIIHCLSQY--GFMGKTLLTRQVPGEKLSVLKF 52 (60)
Q Consensus 6 ~~G~~YLv~~~~N~p~ei~~~~~~~--G~~~~vv~~rk~~~E~L~Vlr~ 52 (60)
.++.+.++.... ++.++.+.+.+. +-...++.-++++.+.=.|.+.
T Consensus 157 ~~~~~vil~~~~-~~~~i~~~L~~~~~~~~~~v~v~~~lg~~~E~i~~~ 204 (210)
T PF00590_consen 157 NGDTLVILTDPR-RLAEIAELLLERLYPPDTPVAVGERLGYPDERIFRG 204 (210)
T ss_dssp TTSEEEEEESGC-CHHHHHHHHHHHSHTTTSEEEEEESTTSTTEEEEEE
T ss_pred CCCEEEEEccCc-hHHHHHHHHHhhCCCCCcEEEHHHhcCCCCCEEEEe
Confidence 345554554444 799999999876 2245666667777554445544
No 224
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=25.69 E-value=1e+02 Score=22.08 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=23.1
Q ss_pred ceecCCCeEEEEEeccC---CHHHHHHHHhhC-Cce
Q psy477 2 DSLSDKGILYLLVIKEN---DPEDIIHCLSQY-GFM 33 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N---~p~ei~~~~~~~-G~~ 33 (60)
+.|.|+|.+...+|+.+ +.+.|...++++ +|.
T Consensus 356 ~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~ 391 (426)
T TIGR00563 356 PLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFP 391 (426)
T ss_pred HhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCe
Confidence 46899999999999885 355555666665 464
No 225
>PF04720 DUF506: Protein of unknown function (DUF506) ; InterPro: IPR006502 This family of uncharacterised plant proteins are defined by a region found toward the C terminus. This region is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=25.46 E-value=77 Score=21.51 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=17.7
Q ss_pred HHHHHHHhhCCceEEEEEEE
Q psy477 21 EDIIHCLSQYGFMGKTLLTR 40 (60)
Q Consensus 21 ~ei~~~~~~~G~~~~vv~~r 40 (60)
..|+..|+..||.+.++.++
T Consensus 91 r~v~~~Lr~~GydAaiCkS~ 110 (218)
T PF04720_consen 91 RSVMSRLRALGYDAAICKSR 110 (218)
T ss_pred HHHHHHHHhCCCCEEEEEec
Confidence 57888999999999999886
No 226
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=25.27 E-value=94 Score=20.78 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=20.1
Q ss_pred ceecCCCeEEEEEeccCCH--HHHHHHHhh
Q psy477 2 DSLSDKGILYLLVIKENDP--EDIIHCLSQ 29 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~p--~ei~~~~~~ 29 (60)
++|+|+|++..-+++.+.. +++++.+.+
T Consensus 187 ~~lkpgG~lvYstcs~~~~Ene~vv~~~l~ 216 (264)
T TIGR00446 187 DALKPGGVLVYSTCSLEPEENEAVVDYLLE 216 (264)
T ss_pred HhcCCCCEEEEEeCCCChHHHHHHHHHHHH
Confidence 4688999998888888643 456666544
No 227
>PRK11018 hypothetical protein; Provisional
Probab=25.27 E-value=1.3e+02 Score=16.60 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=20.9
Q ss_pred ecCCCeEEEEEeccCCHHHHHHHHhhCCceEEE
Q psy477 4 LSDKGILYLLVIKENDPEDIIHCLSQYGFMGKT 36 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~v 36 (60)
|+++.++-+++-...-.+.|-..+++.|++...
T Consensus 32 l~~G~~L~V~~d~~~a~~di~~~~~~~G~~v~~ 64 (78)
T PRK11018 32 LKKGEILEVVSDCPQSINNIPLDARNHGYTVLD 64 (78)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEE
Confidence 455566555543333356777888899998643
No 228
>COG3045 CreA Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.08 E-value=27 Score=22.94 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=27.0
Q ss_pred EEeccCCHHHHHHHHhhCCceEEEEEEE--eeCCeEEEEEEEEeCC
Q psy477 13 LVIKENDPEDIIHCLSQYGFMGKTLLTR--QVPGEKLSVLKFTRSC 56 (60)
Q Consensus 13 v~~~~N~p~ei~~~~~~~G~~~~vv~~r--k~~~E~L~Vlr~~r~~ 56 (60)
+.|.+++|.++-+...+. ..++|.+. ...|-.|.|.|++...
T Consensus 82 ISC~QtGpI~i~d~~~~~--~ge~VFk~~~SlifKsl~VvR~yD~k 125 (165)
T COG3045 82 ISCRQTGPIEISDIDKSK--GGEEVFKKRTSLIFKSLQVVRIYDKK 125 (165)
T ss_pred eeEEeeCCEEeccccccc--chhhhhhccceeeEeeeEEEEEEcCC
Confidence 467777777777665553 24444443 3448888999988654
No 229
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=24.98 E-value=1.4e+02 Score=16.66 Aligned_cols=34 Identities=9% Similarity=-0.002 Sum_probs=25.2
Q ss_pred eecCCCeEEEEEeccCCHHHHHHHHhhCCceEEE
Q psy477 3 SLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKT 36 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~v 36 (60)
-|++++++-+++-...-.+.|-...++.|++...
T Consensus 32 ~l~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~~ 65 (81)
T PRK00299 32 NMQPGETLLIIADDPATTRDIPSFCRFMDHELLA 65 (81)
T ss_pred cCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEE
Confidence 4567777777766666678888888999988753
No 230
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=24.92 E-value=1.8e+02 Score=19.60 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=25.8
Q ss_pred ceecCCCeEEEEEeccCC----------HHHHHHHHhhCCceEEEEEEEe
Q psy477 2 DSLSDKGILYLLVIKEND----------PEDIIHCLSQYGFMGKTLLTRQ 41 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N~----------p~ei~~~~~~~G~~~~vv~~rk 41 (60)
++|+|+|.++++...... ++++.+.+. .+|..+.+.++.
T Consensus 151 ~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~-~~~~i~~l~~~~ 199 (226)
T PRK13256 151 EVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFS-AKIKFELIDSKQ 199 (226)
T ss_pred HHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhcc-CCceEEEeeecc
Confidence 468999999999886432 344444443 467888777643
No 231
>PRK15327 type III secretion system needle complex protein PrgH; Provisional
Probab=24.85 E-value=1.4e+02 Score=22.14 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=26.6
Q ss_pred CCCeEEEEEeccCCHHHHHHHHhhCCc--eEEEE
Q psy477 6 DKGILYLLVIKENDPEDIIHCLSQYGF--MGKTL 37 (60)
Q Consensus 6 ~~G~~YLv~~~~N~p~ei~~~~~~~G~--~~~vv 37 (60)
.+|..|+++..+.|.+=..+.+.+..+ .+.|+
T Consensus 192 rD~~iyVLa~~qrd~~W~~Q~L~k~~~~~~v~v~ 225 (393)
T PRK15327 192 RDKMLYVAAQNERDTLWARQSLARGDYDKNARVI 225 (393)
T ss_pred CCCcEEEEEccccHhHHHHHHHhhCCCcCceEEe
Confidence 589999999999999999999988777 44443
No 232
>TIGR01955 RfaH transcriptional activator RfaH. This model represents the transcriptional activator protein, RfaH. This protein is most closely related to the transcriptional termination/antitermination protein NusG (TIGR00922) and contains the KOW motif (pfam00467). This protein appears to be limited to the gamma proteobacteria. In E. coli, this gene appears to control the expression of haemolysin, sex factor and lipopolysaccharide genes.
Probab=24.80 E-value=1.3e+02 Score=18.24 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.3
Q ss_pred EEEEeccCCHHHHHHHHhhCCceEE
Q psy477 11 YLLVIKENDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 11 YLv~~~~N~p~ei~~~~~~~G~~~~ 35 (60)
|+|-..-|.-+.+.+.|++.|+++-
T Consensus 2 Yvl~~~~~~E~~v~~~L~~~gi~~~ 26 (159)
T TIGR01955 2 YLLYCKPRQEQRAQEHLERQAVECY 26 (159)
T ss_pred EEEEEcCchHHHHHHHHHHCCCEEE
Confidence 7888888999999999999996543
No 233
>PRK08198 threonine dehydratase; Provisional
Probab=24.66 E-value=1.4e+02 Score=21.06 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEEEeccCC---HHHHHHHHhhCCceEEEE
Q psy477 11 YLLVIKEND---PEDIIHCLSQYGFMGKTL 37 (60)
Q Consensus 11 YLv~~~~N~---p~ei~~~~~~~G~~~~vv 37 (60)
..|.+.-++ .+++++.|++.||.+.++
T Consensus 374 v~v~ie~~~~~~~~~l~~~L~~~G~~v~~~ 403 (404)
T PRK08198 374 VELTLETRGPEHIEEILDALRDAGYEVKVV 403 (404)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHCCCeEEEc
Confidence 334444455 567789999999998754
No 234
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=24.62 E-value=2.7e+02 Score=22.44 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=35.9
Q ss_pred ecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEE
Q psy477 4 LSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLK 51 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr 51 (60)
+|+.=.-|+++++..|.+++.+.+++.++.+.||++--. |.++++.
T Consensus 320 ~SESQERMllvv~p~~~e~~~~i~~k~~l~~aVVG~vT~--~~~~~~~ 365 (743)
T COG0046 320 LSESQERMLLVVAPEDVEEFLEICEKERLPAAVVGEVTD--EPRLVVD 365 (743)
T ss_pred HhccchheEEEEccccHHHHHHHHHHcCCCeEEEEEEec--CceEEEE
Confidence 344444588888888999999999999999999987544 3666665
No 235
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=24.56 E-value=78 Score=19.28 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=19.5
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhC
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQY 30 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~ 30 (60)
.|-.=||++..|-|+++.+.++-+
T Consensus 33 ~gkaKliiiAsN~P~~~k~~ieyY 56 (100)
T COG1911 33 LGKAKLIIIASNCPKELKEDIEYY 56 (100)
T ss_pred cCCCcEEEEecCCCHHHHHHHHHH
Confidence 355668899999999999888763
No 236
>PF01577 Peptidase_S30: Potyvirus P1 protease; InterPro: IPR002540 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The potyviridae are a family of positive strand RNA viruses, members of which include Zucchini yellow mosaic virus, and Turnip mosaic virus (strain Japanese) which cause considerable losses of crops worldwide. This entry represents a C-terminal region from various plant potyvirus P1 proteins (found at the N terminus of the polyprotein). The C terminus of P1 is a serine peptidase belonging to MEROPS peptidase family S30 (clan PA(S)). It is the protease responsible for autocatalytic cleavage between P1 and the helper component protease, which is a cysteine peptidase belonging to MEROPS peptidase family C6 IPR001456 from INTERPRO [, ]. The P1 protein may be involved in virus-host interactions [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=24.42 E-value=88 Score=20.51 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=19.4
Q ss_pred HHHHHHHHhhCCceEEEEEEEe
Q psy477 20 PEDIIHCLSQYGFMGKTLLTRQ 41 (60)
Q Consensus 20 p~ei~~~~~~~G~~~~vv~~rk 41 (60)
..+|++.+.+.|..+|+|.+|+
T Consensus 113 ~~~v~~i~~~~~~~vEiIgKrk 134 (245)
T PF01577_consen 113 IRQVLKIAKKKGKPVEIIGKRK 134 (245)
T ss_pred HHHHHHHHHhcCCeEEEEecCC
Confidence 5678888888999999999987
No 237
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=24.26 E-value=47 Score=21.06 Aligned_cols=32 Identities=3% Similarity=0.023 Sum_probs=19.9
Q ss_pred ceecCCCeEEEEEec-------------cCCHHHHHHHHhhCCceEE
Q psy477 2 DSLSDKGILYLLVIK-------------ENDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~-------------~N~p~ei~~~~~~~G~~~~ 35 (60)
+.|+|+|.++++.-. .-.++++.+.+.. |..-
T Consensus 121 ~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~ 165 (195)
T TIGR00477 121 AHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELL 165 (195)
T ss_pred HHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEE
Confidence 468999997776431 1235677777653 5533
No 238
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=24.08 E-value=1.5e+02 Score=19.41 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=21.4
Q ss_pred eecCCCeEEEEEeccCCHHHHHHHHhh
Q psy477 3 SLSDKGILYLLVIKENDPEDIIHCLSQ 29 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~~N~p~ei~~~~~~ 29 (60)
++.++|.+.-..--...|+++++.+++
T Consensus 176 lid~~G~~~~~~~~~~~~~~i~~~l~~ 202 (207)
T COG1999 176 LIDADGRFLGTYDYGEPPEEIAADLKK 202 (207)
T ss_pred EECCCCeEEEEecCCCChHHHHHHHHH
Confidence 456789888877777779999988775
No 239
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=23.83 E-value=1.9e+02 Score=18.24 Aligned_cols=35 Identities=26% Similarity=0.560 Sum_probs=27.2
Q ss_pred ceecCCCeEEEEEeccC-----CHHHHHHHHhhCCceEEE
Q psy477 2 DSLSDKGILYLLVIKEN-----DPEDIIHCLSQYGFMGKT 36 (60)
Q Consensus 2 ~~Ls~~G~~YLv~~~~N-----~p~ei~~~~~~~G~~~~v 36 (60)
..|+++|.++++.=+-. .|.+|.+.....|+....
T Consensus 69 ~~L~d~G~IWvltPK~gr~g~V~~~~I~eaA~taGL~~t~ 108 (127)
T PF11253_consen 69 TNLADDGVIWVLTPKAGRPGHVEPSDIREAAPTAGLVQTK 108 (127)
T ss_pred hhhcCCCEEEEEccCCCCCCCCCHHHHHHHHhhcCCeeee
Confidence 45889999999985543 388898888888988553
No 240
>PF02330 MAM33: Mitochondrial glycoprotein; InterPro: IPR003428 This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q.; GO: 0005759 mitochondrial matrix; PDB: 3QV0_A 1YQF_F 3JV1_A 1P32_A 3RPX_A.
Probab=23.68 E-value=1.3e+02 Score=19.29 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=22.3
Q ss_pred HHHHHHHHhhCCce-------EEEEEEEeeCCeEEEEE
Q psy477 20 PEDIIHCLSQYGFM-------GKTLLTRQVPGEKLSVL 50 (60)
Q Consensus 20 p~ei~~~~~~~G~~-------~~vv~~rk~~~E~L~Vl 50 (60)
++.+...+...+|. .+|.+.|+.++|++.|.
T Consensus 15 ~~~~~~~l~~~~f~i~d~~g~~~V~L~r~~~~E~I~V~ 52 (204)
T PF02330_consen 15 PDSLKEFLPPSPFEIEDKPGGSEVTLTREFGGEKIRVT 52 (204)
T ss_dssp HHHHCCHHHHTTTCEEEECCTTEEEEEEEETTEEEEEE
T ss_pred cHHHHhhCCCCCCEEEEcCCCcEEEEEEecCCcEEEEE
Confidence 44555556666554 35789999999999984
No 241
>PRK00110 hypothetical protein; Validated
Probab=23.57 E-value=2.3e+02 Score=19.41 Aligned_cols=50 Identities=10% Similarity=0.089 Sum_probs=32.3
Q ss_pred ecCCCeEEEEEeccCC----HHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEEE
Q psy477 4 LSDKGILYLLVIKEND----PEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFT 53 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~----p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~ 53 (60)
..|+|++.+|-+--.+ ..+|...+.+.|=..-.-++-...||+..++.+.
T Consensus 90 ~gP~GvaiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~kG~i~~~ 143 (245)
T PRK00110 90 YGPGGVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDRKGVIVIE 143 (245)
T ss_pred EcCCCeEEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEeccceEEEeC
Confidence 4589998877665444 4556666666664433334456678888888775
No 242
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=23.43 E-value=1.4e+02 Score=16.13 Aligned_cols=31 Identities=16% Similarity=0.013 Sum_probs=22.2
Q ss_pred EEeccCCHHHHHHHHhhCCceEEEEEEEeeC
Q psy477 13 LVIKENDPEDIIHCLSQYGFMGKTLLTRQVP 43 (60)
Q Consensus 13 v~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~ 43 (60)
++.+..+.++..+.|++.|+...-...+...
T Consensus 80 ~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~ 110 (128)
T PF00903_consen 80 LAFDVDDLDAAYERLKAQGVEIVEEPDRYYF 110 (128)
T ss_dssp EESSHHHHHHHHHHHHHTTGEEEEEEEEHST
T ss_pred EeccHHHHHHHHHHHhhcCccEEecCCCCCC
Confidence 3445557889999999999887755555543
No 243
>PF11513 TA0956: Thermoplasma acidophilum protein TA0956; InterPro: IPR021595 TA0956 is a protein from Thermoplasma acidophilum which currently has no known function however the structure has been determined. The protein has a two-layered alpha/beta-sandwich topology and is a putative Elongation factor 1-alpha binding motif. ; PDB: 2K24_A 2JMK_A.
Probab=23.36 E-value=62 Score=19.78 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=12.7
Q ss_pred HHHHHHHHhhCCceEEE
Q psy477 20 PEDIIHCLSQYGFMGKT 36 (60)
Q Consensus 20 p~ei~~~~~~~G~~~~v 36 (60)
.+++++..+..||.+++
T Consensus 92 i~ei~kkykd~GykvE~ 108 (110)
T PF11513_consen 92 IEEIVKKYKDSGYKVEI 108 (110)
T ss_dssp HHHHHHHHHCCS-EEEE
T ss_pred HHHHHHHhhcCCceeec
Confidence 56777788889999885
No 244
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=23.32 E-value=45 Score=19.16 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=19.1
Q ss_pred eccCCHHHHHHHHhhCCceEEEEEE
Q psy477 15 IKENDPEDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 15 ~~~N~p~ei~~~~~~~G~~~~vv~~ 39 (60)
+++..+..-++.+++.|+.++.+..
T Consensus 31 iSRtaVwK~Iq~Lr~~G~~I~s~~~ 55 (79)
T COG1654 31 ISRTAVWKHIQQLREEGVDIESVRG 55 (79)
T ss_pred ccHHHHHHHHHHHHHhCCceEecCC
Confidence 3455677888899999999887654
No 245
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=23.24 E-value=1.5e+02 Score=22.72 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=26.9
Q ss_pred EEEEEeccCCHHHHHHHHhhCCceEEEEEEEe
Q psy477 10 LYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQ 41 (60)
Q Consensus 10 ~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk 41 (60)
-+++++...+-+++.+.+++.|..+.+|++-.
T Consensus 300 ~ll~~v~~~~~~~~~~~~~~~g~~~~vIG~v~ 331 (715)
T TIGR01736 300 RMLLVVAPEDVEEVLEIFEKYELPASVIGEVT 331 (715)
T ss_pred eEEEEEChhhHHHHHHHHHHcCCCEEEEEEEe
Confidence 47777788889999999999999999888743
No 246
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=22.96 E-value=1.1e+02 Score=17.85 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.2
Q ss_pred CCeEEEEEeccCCHHHHHHHHhh
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQ 29 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~ 29 (60)
+|-+.||+++.|-|+.+.+.+..
T Consensus 30 ~gkaklViiA~D~~~~~~~~i~~ 52 (99)
T PRK01018 30 LGKAKLVIVASNCPKDIKEDIEY 52 (99)
T ss_pred cCCceEEEEeCCCCHHHHHHHHH
Confidence 57788999999999999888754
No 247
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=22.70 E-value=88 Score=17.75 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.4
Q ss_pred HHHHHHHhhCCceEEEEEE
Q psy477 21 EDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 21 ~ei~~~~~~~G~~~~vv~~ 39 (60)
++|.+.++++||.+.-+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~ 20 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHN 20 (69)
T ss_pred HHHHHHHHHcCCceeEEEc
Confidence 6789999999999876544
No 248
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.54 E-value=1.3e+02 Score=20.42 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=32.4
Q ss_pred CeEEEEEeccCCHHHHHHHHhhCCceEEEEEE-EeeCCeEEEEEEEEeCC
Q psy477 8 GILYLLVIKENDPEDIIHCLSQYGFMGKTLLT-RQVPGEKLSVLKFTRSC 56 (60)
Q Consensus 8 G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~-rk~~~E~L~Vlr~~r~~ 56 (60)
|.==+|++.+. .....+++.||..+.++. ++.++|..+-+.+.-+.
T Consensus 137 G~~~IvtVt~~---~meril~r~Gw~~~riG~~~~ig~~~~VA~~l~i~~ 183 (209)
T COG3916 137 GITGIVTVTDT---GMERILRRAGWPLTRIGPPLTIGNERAVALLLDIDR 183 (209)
T ss_pred CCceEEEEEch---HHHHHHHHcCCCeEEcCCceeeCCeeEEEEEeecCH
Confidence 33334444444 344566788999999888 89999999988876554
No 249
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=22.52 E-value=1.3e+02 Score=19.43 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=19.8
Q ss_pred CCHHHHHHHHhhCCceEEEEEEEe
Q psy477 18 NDPEDIIHCLSQYGFMGKTLLTRQ 41 (60)
Q Consensus 18 N~p~ei~~~~~~~G~~~~vv~~rk 41 (60)
-+++++++.|-..||++-++.-..
T Consensus 124 ~~~~~ll~e~~~~g~~~~iv~v~~ 147 (194)
T cd01994 124 RDQEELLREMIEAGFKAIIIKVAA 147 (194)
T ss_pred CCHHHHHHHHHHcCCeEEEEEecc
Confidence 478999999999999998866543
No 250
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=22.41 E-value=1.6e+02 Score=19.14 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=20.6
Q ss_pred cCCCeEEEEEeccC--CHHHHHHHHhhCC
Q psy477 5 SDKGILYLLVIKEN--DPEDIIHCLSQYG 31 (60)
Q Consensus 5 s~~G~~YLv~~~~N--~p~ei~~~~~~~G 31 (60)
|.++.+..+-.+++ |.+++.+.+++.|
T Consensus 137 tdD~F~l~i~~~d~~~~~~~~~~~L~~~G 165 (173)
T PF11821_consen 137 TDDRFFLAIEADDPKFDEEKTRAFLESLG 165 (173)
T ss_pred cCCeEEEEEEcCCCCCCHHHHHHHHHHcC
Confidence 45566666666676 6899999999987
No 251
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.00 E-value=1.4e+02 Score=15.85 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=18.6
Q ss_pred EEEEeccCCHHHHHHHHhhCCceEE
Q psy477 11 YLLVIKENDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 11 YLv~~~~N~p~ei~~~~~~~G~~~~ 35 (60)
..+...-+|.+++.+.+.+.|+...
T Consensus 69 ~~~~~~v~di~~~~~~l~~~g~~~~ 93 (119)
T cd07263 69 PGLVLATDDIDATYEELKARGVEFS 93 (119)
T ss_pred eEEEEEehHHHHHHHHHHhCCCEEe
Confidence 3444444679999999999998655
No 252
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=21.96 E-value=1.7e+02 Score=24.71 Aligned_cols=37 Identities=14% Similarity=-0.026 Sum_probs=29.4
Q ss_pred ecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEE
Q psy477 4 LSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTR 40 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~r 40 (60)
.|+...-|+|+++..+.+++.+.+++.|..+.+|++-
T Consensus 539 ~SESQeRmlv~V~~e~~e~~~~i~~~~~l~~~vIG~v 575 (1290)
T PRK05297 539 CNESQERYVLAIAPEDLELFEAICERERCPFAVVGEA 575 (1290)
T ss_pred hccccceEEEEEcchhHHHHHHHHHhcCCCEEEEEEE
Confidence 3454445788888888999999999999999988854
No 253
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=21.89 E-value=98 Score=18.25 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=17.0
Q ss_pred CHHHHHHHHhhCCceEEEEEEEeeCC
Q psy477 19 DPEDIIHCLSQYGFMGKTLLTRQVPG 44 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~~~vv~~rk~~~ 44 (60)
-|-.|++.|+..||++ |+..-++.
T Consensus 51 ~Pr~VLnKLE~~G~kV--vsmtgvgq 74 (83)
T PF06399_consen 51 PPRVVLNKLEKMGYKV--VSMTGVGQ 74 (83)
T ss_dssp -HHHHHHHHHHTTEEE--EEEEEETT
T ss_pred ChHHHHHHHHhcCeEE--EEEeccCc
Confidence 3888999999999874 44444444
No 254
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=21.85 E-value=95 Score=17.93 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHhhCCceEEEEEE
Q psy477 17 ENDPEDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 17 ~N~p~ei~~~~~~~G~~~~vv~~ 39 (60)
+++-..|.+.|++.||++.-+..
T Consensus 7 E~~Ls~v~~~L~~~GyeVv~l~~ 29 (80)
T PF03698_consen 7 EEGLSNVKEALREKGYEVVDLEN 29 (80)
T ss_pred cCCchHHHHHHHHCCCEEEecCC
Confidence 34688999999999999875543
No 255
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=21.80 E-value=1.4e+02 Score=15.60 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=19.1
Q ss_pred EEEEeccCCHHHHHHHHhhCCceEE
Q psy477 11 YLLVIKENDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 11 YLv~~~~N~p~ei~~~~~~~G~~~~ 35 (60)
..+...-.+.++..+.+.+.|+...
T Consensus 66 ~~~~~~v~d~~~~~~~l~~~g~~~~ 90 (114)
T cd07245 66 DHIAFRVDDLDAFRARLKAAGVPYT 90 (114)
T ss_pred ceEEEEeCCHHHHHHHHHHcCCCcc
Confidence 4445555679999999999998754
No 256
>KOG3323|consensus
Probab=21.75 E-value=2.4e+02 Score=18.31 Aligned_cols=44 Identities=27% Similarity=0.462 Sum_probs=29.3
Q ss_pred CCeEEEEEeccCCHHHHHHHHhh-------------CCceEEEEEEEeeCCeEEEEEEEE
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQ-------------YGFMGKTLLTRQVPGEKLSVLKFT 53 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~-------------~G~~~~vv~~rk~~~E~L~Vlr~~ 53 (60)
.|.|.||-++..|-++-++.|-+ .||+..| .-..+|-|.|--|+
T Consensus 25 ~Gl~vlvgi~~~dt~ed~~kmvrkiLnlrlfe~es~k~w~ksv---~dl~~eiL~VsQfT 81 (149)
T KOG3323|consen 25 RGLCVLVGISKDDTEEDLEKMVRKILNLRLFEDESGKGWKKSV---MDLNGEILCVSQFT 81 (149)
T ss_pred CceEEEEEEccCCCHHHHHHHHHHHhheeeccccccCcccchh---hhCCCCEEEEEeee
Confidence 68888888888776666555543 3555444 34567888887665
No 257
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=21.69 E-value=1.9e+02 Score=20.11 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=21.2
Q ss_pred CCeEEEEEeccCCHHHHHHHHhhCCce
Q psy477 7 KGILYLLVIKENDPEDIIHCLSQYGFM 33 (60)
Q Consensus 7 ~G~~YLv~~~~N~p~ei~~~~~~~G~~ 33 (60)
||++|+|=.+ .+++++++.|+++-+-
T Consensus 212 GGRvffv~~~-~~~~~~i~yLE~~pVL 237 (242)
T PRK01322 212 GGRIFFVDDS-IDLEELISYLENKPVL 237 (242)
T ss_pred CCEEEEEeCc-cCHHHHHHHHhcCcEE
Confidence 8999999776 4799999999886543
No 258
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=21.64 E-value=3.1e+02 Score=19.59 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=33.1
Q ss_pred EEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEEEeC
Q psy477 11 YLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTRS 55 (60)
Q Consensus 11 YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~~r~ 55 (60)
=+.+-+..+.++.++.|++.|...++...++.....-.+++|.|.
T Consensus 281 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (342)
T cd07894 281 RLRFRSEETAEEFLEHLRRLGVHIEIVELELEREGGYWVVRFDKV 325 (342)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCeEEEEeeeeecCCCEEEEEEEEe
Confidence 355566777888999999999999877666444555677777764
No 259
>PRK08317 hypothetical protein; Provisional
Probab=21.58 E-value=2.1e+02 Score=17.59 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=10.3
Q ss_pred ceecCCCeEEEEE
Q psy477 2 DSLSDKGILYLLV 14 (60)
Q Consensus 2 ~~Ls~~G~~YLv~ 14 (60)
++|+|+|.+.++.
T Consensus 112 ~~L~~gG~l~~~~ 124 (241)
T PRK08317 112 RVLRPGGRVVVLD 124 (241)
T ss_pred HHhcCCcEEEEEe
Confidence 5689999988764
No 260
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=21.54 E-value=2.3e+02 Score=22.35 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=26.3
Q ss_pred CHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEE
Q psy477 19 DPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKF 52 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~ 52 (60)
+++++++.+...|+++|-+.......+.+.|=++
T Consensus 18 ~~~~l~~~lt~~G~EVE~v~~~~~~~~~~~vg~i 51 (798)
T TIGR00472 18 DNEEIAEALTSIGLEVEAVIPFSKPLKGVVVGKV 51 (798)
T ss_pred CHHHHHHHHHhcCcceeeEEecccCcCCEEEEEE
Confidence 5999999999999999988876654555555443
No 261
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.27 E-value=1.3e+02 Score=17.77 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=16.6
Q ss_pred EEeccCCHHHHHHHHhhCCce
Q psy477 13 LVIKENDPEDIIHCLSQYGFM 33 (60)
Q Consensus 13 v~~~~N~p~ei~~~~~~~G~~ 33 (60)
.+.+.|..++|.+.++++|-+
T Consensus 55 Fl~~~~s~eev~~ele~mga~ 75 (88)
T COG4009 55 FLEEVESEEEVERELEDMGAE 75 (88)
T ss_pred EEeccCCHHHHHHHHHHhCch
Confidence 356778899999999888743
No 262
>PRK02899 adaptor protein; Provisional
Probab=21.11 E-value=1.6e+02 Score=19.37 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=22.2
Q ss_pred CCCeEEEEEeccC----CHHHHHHHHhhCCceEE
Q psy477 6 DKGILYLLVIKEN----DPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 6 ~~G~~YLv~~~~N----~p~ei~~~~~~~G~~~~ 35 (60)
-.|..||++...+ +++.++..+.+.|-...
T Consensus 136 ~~~~YYL~l~~~~~~~~~~~~~~ail~EYg~~s~ 169 (197)
T PRK02899 136 YDGRFYLWLEEEELIQLLKADFIAILAEYGNPST 169 (197)
T ss_pred ECCEEEEEEecCCCCHhhHHHHHHHHHhhCCCCc
Confidence 4799999988554 35678888888886643
No 263
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=21.04 E-value=1.6e+02 Score=18.40 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=22.4
Q ss_pred eecCCCeEEEEEeccCCHHHHHHHHhhCCceEE
Q psy477 3 SLSDKGILYLLVIKENDPEDIIHCLSQYGFMGK 35 (60)
Q Consensus 3 ~Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~ 35 (60)
+++++|.++|=+...-.++.-.+.|++-||+..
T Consensus 41 l~~~~~~lflWvTn~~~~~~~~~l~~~WGf~~~ 73 (176)
T PF05063_consen 41 LAAPGALLFLWVTNSQLPEAKLELFPAWGFEYV 73 (176)
T ss_pred hCCCCcEEEEEeccchhhHHHHHHHHhCCCEEE
Confidence 456777777776554444443788999998854
No 264
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=20.91 E-value=88 Score=17.68 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.8
Q ss_pred CHHHHHHHHhhCCceE
Q psy477 19 DPEDIIHCLSQYGFMG 34 (60)
Q Consensus 19 ~p~ei~~~~~~~G~~~ 34 (60)
++.++++.+++.||..
T Consensus 8 ~~ke~ik~Le~~Gf~~ 23 (66)
T COG1724 8 KAKEVIKALEKDGFQL 23 (66)
T ss_pred CHHHHHHHHHhCCcEE
Confidence 5789999999999973
No 265
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=20.80 E-value=2.5e+02 Score=18.20 Aligned_cols=46 Identities=20% Similarity=0.095 Sum_probs=26.7
Q ss_pred ecCCCeEEEEEeccCCHHHHHHHHhhCCceEEEEEEEeeCCeEEEEEEE
Q psy477 4 LSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKF 52 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p~ei~~~~~~~G~~~~vv~~rk~~~E~L~Vlr~ 52 (60)
++..+.+-++ -..|+++++.+.+...|+ +++.-+++++++=.|++.
T Consensus 163 l~~~~~~vl~-~~~~~~~~i~~~l~~~~~--~v~v~e~l~~~~E~i~~~ 208 (229)
T PRK05576 163 LTDFDSVVLM-KVYKNFALIEELLEEGYL--DALYVRRAYMEGEQILRR 208 (229)
T ss_pred hhcCCEEEEE-ecCCCHHHHHHHHHhcCC--CEEEEEECCCCCeEEEcc
Confidence 3444443333 456889999998888777 444445555444334443
No 266
>PF09047 MEF2_binding: MEF2 binding; InterPro: IPR015134 The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription []. ; PDB: 1N6J_G.
Probab=20.65 E-value=40 Score=16.68 Aligned_cols=8 Identities=50% Similarity=0.592 Sum_probs=1.8
Q ss_pred eecCCCeE
Q psy477 3 SLSDKGIL 10 (60)
Q Consensus 3 ~Ls~~G~~ 10 (60)
+|||+|.+
T Consensus 2 llspkgsi 9 (35)
T PF09047_consen 2 LLSPKGSI 9 (35)
T ss_dssp ----SS--
T ss_pred ccCCCCcc
Confidence 68899875
No 267
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=20.55 E-value=69 Score=20.16 Aligned_cols=26 Identities=12% Similarity=0.344 Sum_probs=15.2
Q ss_pred ecCCCeEEEEEeccCCHHHHHHHHhh
Q psy477 4 LSDKGILYLLVIKENDPEDIIHCLSQ 29 (60)
Q Consensus 4 Ls~~G~~YLv~~~~N~p~ei~~~~~~ 29 (60)
...-|..|+|....++.++|+..|+.
T Consensus 107 ~~kFGf~Fvi~~~g~s~~~Il~~l~~ 132 (159)
T PF09349_consen 107 EEKFGFPFVICARGRSAAEILAALER 132 (159)
T ss_dssp HHHHSS-----GTT--HHHHHHHHHH
T ss_pred HHHcCCceEeecCCCCHHHHHHHHHH
Confidence 34459999999999999999998875
No 268
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=20.49 E-value=1.2e+02 Score=16.60 Aligned_cols=19 Identities=21% Similarity=0.252 Sum_probs=15.0
Q ss_pred HHHHHHHhhCCceEEEEEE
Q psy477 21 EDIIHCLSQYGFMGKTLLT 39 (60)
Q Consensus 21 ~ei~~~~~~~G~~~~vv~~ 39 (60)
++|.+.|.++||.+.-+-.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~ 20 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHN 20 (68)
T ss_pred HHHHHHHHHcCCceEEEEc
Confidence 5788999999999875443
No 269
>PRK11633 cell division protein DedD; Provisional
Probab=20.37 E-value=2.9e+02 Score=18.75 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=27.2
Q ss_pred CCeEEEEEe-ccCC---HHHHHHHHhhCCceEEEEEEEeeCCeEEE
Q psy477 7 KGILYLLVI-KEND---PEDIIHCLSQYGFMGKTLLTRQVPGEKLS 48 (60)
Q Consensus 7 ~G~~YLv~~-~~N~---p~ei~~~~~~~G~~~~vv~~rk~~~E~L~ 48 (60)
.|..|+|.+ +..+ .+++...|+..||.+.+.-.....+. ++
T Consensus 146 ~~~~~vVQlgaf~n~~~A~~l~~kL~~~G~~Ay~~~~~~~~G~-~t 190 (226)
T PRK11633 146 TGKAYVVQLGALKNADKVNEIVAKLRLSGYRVYTVPSTPVQGK-IT 190 (226)
T ss_pred CCCcEEEEecccCCHHHHHHHHHHHHHCCCeeEEEeeecCCCc-EE
Confidence 344565544 3333 66778999999999998766655553 44
No 270
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=20.35 E-value=1.4e+02 Score=19.36 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=17.9
Q ss_pred eEEEEEeccCCHHHHHHHHhhCCceE
Q psy477 9 ILYLLVIKENDPEDIIHCLSQYGFMG 34 (60)
Q Consensus 9 ~~YLv~~~~N~p~ei~~~~~~~G~~~ 34 (60)
.+..+...+ .|+++++.|.+.||..
T Consensus 51 ~~lyvs~ee-~~~~i~~~~~~~g~~~ 75 (237)
T TIGR03877 51 PGIYVALEE-HPVQVRRNMAQFGWDV 75 (237)
T ss_pred cEEEEEeeC-CHHHHHHHHHHhCCCH
Confidence 333444444 6999999999999864
No 271
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=20.26 E-value=1.5e+02 Score=19.05 Aligned_cols=21 Identities=38% Similarity=0.670 Sum_probs=14.8
Q ss_pred eEEEEEeccCCHHHHHHHHhh
Q psy477 9 ILYLLVIKENDPEDIIHCLSQ 29 (60)
Q Consensus 9 ~~YLv~~~~N~p~ei~~~~~~ 29 (60)
++||++...|+++.+...++.
T Consensus 1 iAylil~h~~~~~~~~~l~~~ 21 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRL 21 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHH
Confidence 479999988888888776655
Done!