RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy477
         (60 letters)



>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
          Length = 188

 Score = 28.7 bits (65), Expect = 0.12
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 2   DSLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTR 54
             L   G + LL       ++++  L + GF  + +   + P E+L VL+  +
Sbjct: 136 RYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188


>gnl|CDD|234827 PRK00733, hppA, membrane-bound proton-translocating
           pyrophosphatase; Validated.
          Length = 666

 Score = 27.0 bits (61), Expect = 0.45
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 8   GILYLLVIKENDPEDIIHCLSQYGF 32
             LYL+     +P+D    L  +GF
Sbjct: 121 AGLYLVFGLGANPDDAPDALVGFGF 145


>gnl|CDD|237916 PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional.
          Length = 186

 Score = 26.7 bits (59), Expect = 0.64
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 10  LYLLVIKENDPEDIIHCLSQYGFM 33
           LYL+V KEN  E  IH   + GF 
Sbjct: 120 LYLIVDKEN--EKAIHIYRKLGFE 141


>gnl|CDD|140277 PTZ00250, PTZ00250, variable surface protein Vir23; Provisional.
          Length = 350

 Score = 26.5 bits (58), Expect = 0.66
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 4   LSDKGILYLLVIKENDPEDIIHCL 27
           L  KGI ++L I  ND +DII+ L
Sbjct: 255 LQAKGIPFILPIFGNDADDIINIL 278


>gnl|CDD|234906 PRK01123, PRK01123, shikimate kinase; Provisional.
          Length = 282

 Score = 26.0 bits (58), Expect = 1.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 3   SLSDKGILYLLVIKENDPEDIIHCLSQYGFMGKT 36
            LS  G  Y+ ++ E DPE++     +YG +  T
Sbjct: 239 GLSGTGPSYVAIVDEEDPEEVKEAWEKYGKVIVT 272


>gnl|CDD|235591 PRK05755, PRK05755, DNA polymerase I; Provisional.
          Length = 880

 Score = 24.7 bits (55), Expect = 3.0
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 13  LVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSV 49
           L ++  D E +I    +  F  K+LL R    E   +
Sbjct: 257 LELQPPDREKLIALFKELEF--KSLLRRAAAAEAAPL 291


>gnl|CDD|216460 pfam01369, Sec7, Sec7 domain.  The Sec7 domain is a
          guanine-nucleotide-exchange-factor (GEF) for the
          pfam00025 family.
          Length = 188

 Score = 24.1 bits (53), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 7  KGILYLL---VIKENDPEDIIHCLSQYGFMGKT 36
          KGI YL+   +I E+DP++I   L +   + K 
Sbjct: 21 KGIEYLIENGLIDEDDPKEIAKFLRETPGLDKK 53


>gnl|CDD|218323 pfam04910, Tcf25, Transcriptional repressor TCF25.  Members of
          this family are transcriptional repressors. They may
          act by increasing histone deacetylase activity at
          promoter regions.
          Length = 342

 Score = 24.2 bits (53), Expect = 4.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 19 DPEDIIHCLSQYGFMGKTLL 38
          DPE +I  L +Y +   TLL
Sbjct: 25 DPEALISLLQKYPYHVDTLL 44


>gnl|CDD|215360 PLN02672, PLN02672, methionine S-methyltransferase.
          Length = 1082

 Score = 24.0 bits (52), Expect = 5.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 9/46 (19%)

Query: 14  VIKENDPEDIIHCLSQY----GFM----GKTLLTRQVPGEKLSVLK 51
           ++ EN  E+ ++ LS Y    GF+    G  L+ R V  E +SV+K
Sbjct: 225 LVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVE-EGISVIK 269


>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase.  The
           gene hemK from E. coli was found to contribute to heme
           biosynthesis and originally suggested to be
           protoporphyrinogen oxidase (Medline 95189105).
           Functional analysis of the nearest homolog in
           Saccharomyces cerevisiae, YNL063w, finds it is not
           protoporphyrinogen oxidase and sequence analysis
           suggests that HemK homologs have
           S-adenosyl-methionine-dependent methyltransferase
           activity (Medline 99237242). Homologs are found, usually
           in a single copy, in nearly all completed genomes, but
           varying somewhat in apparent domain architecture. This
           model represents an archaeal and eukaryotic protein
           family that lacks an N-terminal domain found in HemK and
           its eubacterial homologs. It is found in a single copy
           in the first six completed archaeal and eukaryotic
           genomes [Unknown function, Enzymes of unknown
           specificity].
          Length = 179

 Score = 24.0 bits (52), Expect = 5.7
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 4   LSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLK 51
           L + G + L+    N   D    L + GF  + +  R +  E+L  +K
Sbjct: 130 LKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGLFFEELFAIK 177


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.139    0.400 

Gapped
Lambda     K      H
   0.267   0.0737    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,920,236
Number of extensions: 200444
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 10
Length of query: 60
Length of database: 10,937,602
Length adjustment: 31
Effective length of query: 29
Effective length of database: 9,562,628
Effective search space: 277316212
Effective search space used: 277316212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)