RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy477
         (60 letters)



>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
           methyltransferase, methylation, trans
           activator-transferase complex; HET: SAM; 2.00A
           {Encephalitozoon cuniculi}
          Length = 170

 Score = 58.3 bits (141), Expect = 6e-13
 Identities = 17/50 (34%), Positives = 32/50 (64%)

Query: 6   DKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTRS 55
             G+LYLLVI+ N P++++  L + G+  + L  R++ GE + ++K  +S
Sbjct: 115 TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKILGETVYIIKGEKS 164


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.9 bits (61), Expect = 0.13
 Identities = 7/58 (12%), Positives = 21/58 (36%), Gaps = 14/58 (24%)

Query: 12  LLVI-----KENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSV----LKFTRSCDEKQ 60
           LL +      ++D   +++          +L+ +Q     +S+    L+     + + 
Sbjct: 391 LLSLIWFDVIKSDVMVVVN-----KLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443


>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
          ADP; 3.90A {Thermus thermophilus}
          Length = 499

 Score = 24.5 bits (54), Expect = 2.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 34 GKTLLTRQVPGE 45
          GKT L R V GE
Sbjct: 76 GKTHLARAVAGE 87


>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
          {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
          2cea_A* 3kds_E*
          Length = 476

 Score = 24.5 bits (54), Expect = 2.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)

Query: 34 GKTLLTRQVPGE 45
          GKTLL R V GE
Sbjct: 61 GKTLLARAVAGE 72


>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
          cell CELL division, hydrolase, membrane, metal-binding;
          3.30A {Helicobacter pylori} PDB: 2r65_A*
          Length = 268

 Score = 24.1 bits (53), Expect = 2.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 34 GKTLLTRQVPGE 45
          GKTLL + V GE
Sbjct: 56 GKTLLAKAVAGE 67


>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
          2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
          1iy0_A* 1iy1_A*
          Length = 254

 Score = 23.8 bits (52), Expect = 3.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 34 GKTLLTRQVPGE 45
          GKT L R V GE
Sbjct: 61 GKTHLARAVAGE 72


>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
          3.20A {Thermus thermophilus} SCOP: c.37.1.20
          Length = 278

 Score = 23.8 bits (52), Expect = 3.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 34 GKTLLTRQVPGE 45
          GKT L R V GE
Sbjct: 85 GKTHLARAVAGE 96


>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
          {Escherichia coli} SCOP: c.37.1.20
          Length = 257

 Score = 23.8 bits (52), Expect = 4.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 34 GKTLLTRQVPGE 45
          GKTLL + + GE
Sbjct: 57 GKTLLAKAIAGE 68


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.139    0.400 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 858,479
Number of extensions: 36403
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 8
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)