RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy477
         (60 letters)



>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
           subunit 1 {Thermus thermophilus [TaxId: 274]}
          Length = 437

 Score = 25.9 bits (56), Expect = 0.26
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 6/48 (12%)

Query: 13  LVIK-ENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTRSCDEK 59
             +    DPE +   L++ GF G T + R+             +  E 
Sbjct: 378 FALALPKDPEAVRRALAERGFHGATPVPREYGENLALF-----AATEL 420


>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase
          {Alicyclobacillus acidocaldarius [TaxId: 405212]}
          Length = 352

 Score = 24.7 bits (53), Expect = 0.71
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 6  DKGILYLLVIKENDPEDIIHCLSQY---GFMGKTLLTRQVPGEKLSVLK 51
          D+ + YLL  ++++       +S     G     L    +P +   ++K
Sbjct: 9  DRAVEYLLSCQKDEGYWWGPLISPVWDTGLAVLALRAAGLPADHDRLVK 57


>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572
          {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 71

 Score = 23.1 bits (50), Expect = 1.8
 Identities = 2/28 (7%), Positives = 10/28 (35%), Gaps = 3/28 (10%)

Query: 5  SDKGILYLLVIKENDPEDIIHCLSQYGF 32
          ++   + +     ++ +  I  L +   
Sbjct: 36 NNVANVVIRP---SNMDKCIEVLKEKKV 60


>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836)
           {Thermus thermophilus [TaxId: 274]}
          Length = 254

 Score = 23.3 bits (49), Expect = 2.1
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 4   LSDKGILYLLVIKENDPEDIIHCLSQYGFMGKTLLTRQVPGEKLSVLKFTR 54
           L   G   L  I ++    +   ++  GF     L     GE +  L + R
Sbjct: 208 LVPGGRALLTGILKDRAPLVREAMAGAGF---RPLEEAAEGEWVL-LAYGR 254


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.400 

Gapped
Lambda     K      H
   0.267   0.0503    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 214,365
Number of extensions: 7003
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 5
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)