BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4771
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 49/228 (21%)
Query: 111 CGRPLGIKFD-KNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 169
CGR I ++ +N L++ D Y+ L V G QL T +DG + +VTVD
Sbjct: 79 CGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLA---TSVDGVPFKWLYAVTVDQ 135
Query: 170 DGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGS--- 226
G+VY++D ST Y + + S
Sbjct: 136 -------------------------------RTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164
Query: 227 GRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEV 286
GRLI+Y+P TK+ +L+ LH G E+SAD SFV+VAE +S ++ +Y+L+GPK+G +EV
Sbjct: 165 GRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV 224
Query: 287 FIDGLPGLPDNVKRDSKGNFLVSLVCPVEQPSEQAGNIR---DPAGAQ 331
+ +P P N+KR++ G+F VS E GN+ DP G +
Sbjct: 225 LVK-IPN-PGNIKRNADGHFWVS------SSEELDGNMHGRVDPKGIK 264
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 49/228 (21%)
Query: 111 CGRPLGIKFD-KNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 169
CGR I ++ +N L++ D Y+ L V G QL T +DG + +VTVD
Sbjct: 70 CGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLA---TSVDGVPFKWLYAVTVDQ 126
Query: 170 DGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGS--- 226
G+VY++D ST Y + + S
Sbjct: 127 -------------------------------RTGIVYFTDVSTLYDDRGVQQIMDTSDKT 155
Query: 227 GRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEV 286
GRLI+Y+P TK+ +L+ LH G E+SAD SFV+VAE +S ++ +Y+L+GPK+G +EV
Sbjct: 156 GRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV 215
Query: 287 FIDGLPGLPDNVKRDSKGNFLVSLVCPVEQPSEQAGNIR---DPAGAQ 331
+ +P P N+KR++ G+F VS E GN+ DP G +
Sbjct: 216 LVK-IPN-PGNIKRNADGHFWVS------SSEELDGNMHGRVDPKGIK 255
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 100/203 (49%), Gaps = 40/203 (19%)
Query: 111 CGRPLGIKFD-KNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 169
CGR I ++ +N ++ D Y+ L V G QL T +DG + +VTVD
Sbjct: 79 CGRTYDISYNLQNNQXYIVDCYYHLSVVGSEGGHATQLA---TSVDGVPFKWLYAVTVDQ 135
Query: 170 DGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGS--- 226
G+VY++D ST Y + + S
Sbjct: 136 -------------------------------RTGIVYFTDVSTLYDDRGVQQIXDTSDKT 164
Query: 227 GRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEV 286
GRL +Y+P TK+ +L LH G E+SAD SFV+VAE +S ++ +Y+L+GPK+G +EV
Sbjct: 165 GRLXKYDPSTKETTLLXKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV 224
Query: 287 FIDGLPGLPDNVKRDSKGNFLVS 309
+ +P P N+KR++ G+F VS
Sbjct: 225 LVK-IPN-PGNIKRNADGHFWVS 245
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 87/212 (41%), Gaps = 27/212 (12%)
Query: 116 GIKFDKNGALHVADAYFG-LYKVNVTTGQTEQ-LISMDTEIDGAKPQIPNSVTVDSDGQT 173
G+ FD+ G L + D + G ++K+N T + ++ +S K + V G
Sbjct: 49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF 108
Query: 174 GQTEQLISMDTEIDGAKPQIP--------NSVTVDSDGMVYWSDSSTKYKSGLFEGLTSG 225
T + + D + I N + DS G Y++D F G ++
Sbjct: 109 KSTGGIFAATENGDNLQDIIEDLSTAYCINDMVFDSKGGFYFTD---------FRGYSTN 159
Query: 226 S-GRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG------ 278
G + +P + +I N+ ANG+ LS DE + V ET ++R+HR L+
Sbjct: 160 PLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ 219
Query: 279 PKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310
P + G G PD+ DS N V++
Sbjct: 220 PFGATIPYYFTGHEG-PDSCCIDSDDNLYVAM 250
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 13/205 (6%)
Query: 116 GIKFDKNGALHVADAYFG-LYKVNVTTGQTEQ-LISMDTEIDGAKPQIPNSVTVDSDGQT 173
G+ FD+ G L + D + G ++K+N T + ++ +S K + V G
Sbjct: 49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF 108
Query: 174 GQTEQLISMDTEIDGAKPQIPN-SVTVDSDGMVYWSDSSTKYKSGLFEGLTSGS-GRLIQ 231
T + + D + I + S D MV+ DS + F G ++ G +
Sbjct: 109 KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVF--DSKGGFYFTDFRGYSTNPLGGVYY 166
Query: 232 YNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG------PKQGKSE 285
+P + +I N+ ANG+ LS DE + V ET ++R+HR L+ P
Sbjct: 167 VSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP 226
Query: 286 VFIDGLPGLPDNVKRDSKGNFLVSL 310
+ G G PD+ DS N V++
Sbjct: 227 YYFTGHEG-PDSCCIDSDDNLYVAM 250
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 27/211 (12%)
Query: 116 GIKFDKNGALHVADAYFG-LYKVNVTTGQTEQ-LISMDTEIDGAKPQIPNSVTVDSDGQT 173
G+ FD+ G L + D + G ++K+N T + ++ +S K + V G
Sbjct: 49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF 108
Query: 174 GQTEQLISMDTEIDGAKPQIPNSVTV--------DSDGMVYWSDSSTKYKSGLFEGLTSG 225
T + + D + I + T DS G Y++D F G ++
Sbjct: 109 KSTGGIFAATENGDNLQDIIEDLSTAYCIDDXVFDSKGGFYFTD---------FRGYSTN 159
Query: 226 S-GRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG------ 278
G + +P + +I N+ ANG+ LS DE + V ET ++R+HR L+
Sbjct: 160 PLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ 219
Query: 279 PKQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 309
P + G G PD+ DS N V+
Sbjct: 220 PFGATIPYYFTGHEG-PDSCCIDSDDNLYVA 249
>pdb|3HX6|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pily1
C-Terminal Domain
pdb|3HX6|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pily1
C-Terminal Domain
Length = 570
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 235 KTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPG 293
KT+ +V + AN +G + +E+F + + ++H+ +G + G + ++DG P
Sbjct: 82 KTRAPRVYVGANDGMLHGFDTDGNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPV 141
Query: 294 LPD 296
+ D
Sbjct: 142 VAD 144
>pdb|1V04|A Chain A, Serum Paraoxonase By Directed Evolution
pdb|3SRE|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5
pdb|3SRG|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5 In
Complex With 2- Hydroxyquinoline
Length = 355
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 240 KVLIANLHFANGVELSADESFVIVAETMSSRVHRY 274
+V+ FANG+ +S D +V +AE ++ ++H Y
Sbjct: 214 RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVY 248
>pdb|3IT8|D Chain D, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|E Chain E, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|F Chain F, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|J Chain J, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|K Chain K, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|L Chain L, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
Length = 324
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 273 RYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNF--LVSLVCPVEQPSEQ 320
RYY P+ G+ + G PG P N+K+D N L LV + S Q
Sbjct: 232 RYY---PEWGRKSNYEPGEPGFPWNIKKDKDANTYSLTDLVRTTSKMSSQ 278
>pdb|1KV9|A Chain A, Structure At 1.9 A Resolution Of A Quinohemoprotein
Alcohol Dehydrogenase From Pseudomonas Putida Hk5
Length = 668
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 83 HILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPL---GIKFDK 121
++L + GKL+ K GK + K + GRP+ G++++K
Sbjct: 327 YVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEK 368
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,845,186
Number of Sequences: 62578
Number of extensions: 486359
Number of successful extensions: 745
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 18
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)