Query psy4771
Match_columns 337
No_of_seqs 270 out of 2109
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 17:17:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520|consensus 100.0 2.3E-42 4.9E-47 311.2 21.9 259 29-326 31-306 (376)
2 COG3386 Gluconolactonase [Carb 99.9 8.1E-26 1.7E-30 205.4 23.5 211 45-312 14-232 (307)
3 PF08450 SGL: SMP-30/Gluconola 99.9 1.8E-25 4E-30 199.2 22.6 194 65-313 2-204 (246)
4 PF03088 Str_synth: Strictosid 99.8 2.1E-19 4.6E-24 132.2 6.7 85 195-279 1-89 (89)
5 PLN02919 haloacid dehalogenase 99.8 8.3E-17 1.8E-21 168.7 26.3 217 60-313 565-824 (1057)
6 PLN02919 haloacid dehalogenase 99.7 3E-15 6.4E-20 157.2 25.4 210 62-313 623-879 (1057)
7 COG4257 Vgb Streptogramin lyas 99.7 4.4E-15 9.5E-20 128.4 21.6 224 54-313 53-296 (353)
8 PF08450 SGL: SMP-30/Gluconola 99.6 7.9E-15 1.7E-19 130.7 16.9 180 64-311 41-245 (246)
9 KOG4499|consensus 99.6 8.6E-14 1.9E-18 117.9 14.2 129 191-325 108-248 (310)
10 PF10282 Lactonase: Lactonase, 99.6 2.8E-12 6E-17 120.0 25.1 230 62-313 36-313 (345)
11 KOG4659|consensus 99.5 3.6E-12 7.7E-17 128.7 20.4 218 67-328 411-694 (1899)
12 PRK11028 6-phosphogluconolacto 99.5 2.5E-11 5.5E-16 112.7 24.9 220 64-311 36-293 (330)
13 PF10282 Lactonase: Lactonase, 99.4 4.9E-11 1.1E-15 111.6 23.6 184 111-313 36-266 (345)
14 COG2706 3-carboxymuconate cycl 99.4 6.5E-10 1.4E-14 99.9 26.1 228 62-313 39-311 (346)
15 PRK11028 6-phosphogluconolacto 99.4 2.8E-10 6.1E-15 105.7 24.9 208 74-312 3-248 (330)
16 COG3386 Gluconolactonase [Carb 99.4 5.5E-11 1.2E-15 108.5 19.5 181 66-313 70-277 (307)
17 TIGR02604 Piru_Ver_Nterm putat 99.4 5.8E-11 1.3E-15 112.0 19.4 176 55-274 5-210 (367)
18 COG4257 Vgb Streptogramin lyas 99.3 5.4E-10 1.2E-14 97.2 22.1 224 53-313 94-338 (353)
19 TIGR02604 Piru_Ver_Nterm putat 99.3 6E-11 1.3E-15 111.9 17.8 102 190-313 70-204 (367)
20 COG3391 Uncharacterized conser 99.3 6.1E-10 1.3E-14 105.5 21.0 184 63-312 74-273 (381)
21 COG2706 3-carboxymuconate cycl 99.1 3.1E-08 6.7E-13 89.2 22.9 185 109-313 37-264 (346)
22 COG3391 Uncharacterized conser 99.1 1.8E-08 3.9E-13 95.5 22.0 188 64-313 32-228 (381)
23 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 7.4E-08 1.6E-12 87.1 24.7 202 64-301 74-299 (300)
24 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 1.2E-07 2.7E-12 85.6 25.7 207 74-311 2-226 (300)
25 KOG1214|consensus 99.1 2.7E-09 5.9E-14 104.3 15.2 182 65-313 1027-1217(1289)
26 TIGR02658 TTQ_MADH_Hv methylam 99.0 9.3E-08 2E-12 88.7 21.8 53 227-279 279-332 (352)
27 PF07995 GSDH: Glucose / Sorbo 99.0 3.3E-08 7.2E-13 91.9 17.9 241 63-311 2-324 (331)
28 KOG4659|consensus 98.9 1.2E-07 2.6E-12 96.9 19.8 211 62-313 364-613 (1899)
29 PF03022 MRJP: Major royal jel 98.8 1.1E-07 2.3E-12 86.5 15.3 152 114-313 3-206 (287)
30 PF06977 SdiA-regulated: SdiA- 98.8 8.6E-07 1.9E-11 78.5 20.3 195 62-310 21-239 (248)
31 PF05096 Glu_cyclase_2: Glutam 98.8 1E-06 2.2E-11 77.8 19.6 153 65-277 92-261 (264)
32 PF02239 Cytochrom_D1: Cytochr 98.8 2.5E-07 5.4E-12 87.2 16.0 175 73-313 6-193 (369)
33 KOG1214|consensus 98.7 1.7E-07 3.6E-12 92.1 13.7 158 57-279 1062-1228(1289)
34 TIGR03606 non_repeat_PQQ dehyd 98.7 9.1E-07 2E-11 84.6 18.3 165 110-313 28-250 (454)
35 PF03022 MRJP: Major royal jel 98.7 5.1E-06 1.1E-10 75.6 20.9 207 67-313 5-256 (287)
36 PF07995 GSDH: Glucose / Sorbo 98.6 5.7E-07 1.2E-11 83.7 13.7 160 112-313 2-202 (331)
37 TIGR03032 conserved hypothetic 98.6 6.7E-06 1.4E-10 73.8 19.3 209 74-313 20-262 (335)
38 KOG1520|consensus 98.6 3.1E-07 6.7E-12 84.2 10.0 141 63-265 115-282 (376)
39 COG3204 Uncharacterized protei 98.6 6.1E-05 1.3E-09 66.9 23.5 191 66-312 89-303 (316)
40 PF01731 Arylesterase: Arylest 98.6 3.1E-07 6.8E-12 67.3 7.5 81 195-277 1-84 (86)
41 TIGR03606 non_repeat_PQQ dehyd 98.6 1E-05 2.3E-10 77.4 19.8 181 54-275 22-260 (454)
42 PF06977 SdiA-regulated: SdiA- 98.5 6E-06 1.3E-10 73.1 16.8 165 56-275 58-248 (248)
43 PRK02888 nitrous-oxide reducta 98.5 3.9E-06 8.5E-11 82.2 14.8 87 227-313 296-395 (635)
44 PF02239 Cytochrom_D1: Cytochr 98.3 5.2E-05 1.1E-09 71.5 17.7 157 66-277 40-202 (369)
45 PRK04792 tolB translocation pr 98.3 0.00026 5.5E-09 68.8 23.0 112 116-279 266-384 (448)
46 PF03088 Str_synth: Strictosid 98.3 3.6E-06 7.8E-11 62.1 7.5 58 115-212 1-78 (89)
47 TIGR02658 TTQ_MADH_Hv methylam 98.3 5.1E-05 1.1E-09 70.6 16.8 110 124-279 14-138 (352)
48 PRK05137 tolB translocation pr 98.3 0.00032 6.9E-09 67.8 22.6 163 74-305 216-389 (435)
49 KOG4499|consensus 98.2 5.1E-05 1.1E-09 65.2 13.5 152 48-266 108-274 (310)
50 KOG0291|consensus 98.2 0.00033 7E-09 69.1 20.5 185 64-313 352-542 (893)
51 PRK04922 tolB translocation pr 98.1 0.00092 2E-08 64.6 23.0 134 115-305 251-391 (433)
52 KOG0318|consensus 98.1 0.00087 1.9E-08 63.6 21.0 184 64-313 322-508 (603)
53 PRK02889 tolB translocation pr 98.1 0.0013 2.8E-08 63.5 23.0 134 115-305 243-383 (427)
54 PRK03629 tolB translocation pr 98.1 0.0013 2.9E-08 63.4 22.7 133 116-305 247-386 (429)
55 PF01436 NHL: NHL repeat; Int 98.1 1E-05 2.2E-10 46.2 4.9 28 246-274 1-28 (28)
56 cd00200 WD40 WD40 domain, foun 98.0 0.0022 4.7E-08 56.1 21.8 179 67-311 56-238 (289)
57 PRK05137 tolB translocation pr 98.0 0.0013 2.7E-08 63.7 21.7 114 114-279 204-324 (435)
58 PRK00178 tolB translocation pr 98.0 0.0013 2.8E-08 63.5 21.3 134 115-305 246-386 (430)
59 PRK04043 tolB translocation pr 98.0 0.0022 4.8E-08 61.6 22.6 165 75-310 203-386 (419)
60 TIGR02800 propeller_TolB tol-p 98.0 0.0029 6.2E-08 60.6 23.3 135 114-305 236-377 (417)
61 PF07433 DUF1513: Protein of u 98.0 0.0016 3.4E-08 59.0 19.4 202 71-313 61-277 (305)
62 cd00200 WD40 WD40 domain, foun 98.0 0.0055 1.2E-07 53.5 22.6 180 65-311 96-280 (289)
63 PRK03629 tolB translocation pr 97.9 0.0036 7.7E-08 60.5 22.5 136 114-305 201-343 (429)
64 PRK01742 tolB translocation pr 97.9 0.004 8.7E-08 60.1 21.6 132 116-309 252-388 (429)
65 COG2133 Glucose/sorbosone dehy 97.8 0.0018 4E-08 60.9 17.8 123 190-313 237-387 (399)
66 COG2133 Glucose/sorbosone dehy 97.8 0.002 4.3E-08 60.7 17.3 80 191-270 176-262 (399)
67 PRK04792 tolB translocation pr 97.8 0.0062 1.3E-07 59.2 21.3 135 115-305 221-362 (448)
68 PRK02889 tolB translocation pr 97.7 0.0087 1.9E-07 57.7 21.4 135 115-305 199-340 (427)
69 PRK00178 tolB translocation pr 97.7 0.012 2.5E-07 56.8 22.4 135 115-305 202-343 (430)
70 PRK01029 tolB translocation pr 97.7 0.029 6.3E-07 54.2 24.2 165 117-305 190-383 (428)
71 PRK04922 tolB translocation pr 97.7 0.0057 1.2E-07 59.1 19.4 135 115-305 207-348 (433)
72 PF05096 Glu_cyclase_2: Glutam 97.7 0.036 7.8E-07 49.3 22.9 174 65-310 47-249 (264)
73 PRK04043 tolB translocation pr 97.7 0.014 3E-07 56.1 21.6 132 116-305 192-331 (419)
74 TIGR02800 propeller_TolB tol-p 97.6 0.02 4.4E-07 54.7 22.0 135 115-305 193-334 (417)
75 PF07433 DUF1513: Protein of u 97.6 0.0054 1.2E-07 55.6 16.5 110 111-267 4-119 (305)
76 PRK01742 tolB translocation pr 97.6 0.015 3.3E-07 56.1 20.9 113 114-278 206-325 (429)
77 KOG0315|consensus 97.6 0.028 6.2E-07 49.0 19.8 199 66-329 87-299 (311)
78 PRK02888 nitrous-oxide reducta 97.6 0.013 2.9E-07 58.0 20.0 204 74-313 206-452 (635)
79 PF05787 DUF839: Bacterial pro 97.6 0.0017 3.7E-08 63.9 14.0 74 190-265 434-520 (524)
80 PRK01029 tolB translocation pr 97.5 0.025 5.5E-07 54.6 21.6 174 75-279 202-405 (428)
81 TIGR03118 PEPCTERM_chp_1 conse 97.5 0.055 1.2E-06 48.8 21.4 207 60-277 20-279 (336)
82 COG3823 Glutamine cyclotransfe 97.5 0.0027 5.9E-08 53.8 12.4 114 112-275 131-257 (262)
83 PF01436 NHL: NHL repeat; Int 97.4 0.00023 5E-09 40.5 3.8 25 112-136 2-27 (28)
84 COG3211 PhoX Predicted phospha 97.4 0.0021 4.5E-08 62.1 11.9 73 190-267 498-574 (616)
85 TIGR03118 PEPCTERM_chp_1 conse 97.4 0.023 5.1E-07 51.1 17.4 170 109-313 20-208 (336)
86 KOG0318|consensus 97.4 0.073 1.6E-06 51.0 21.4 219 67-313 195-427 (603)
87 PF13360 PQQ_2: PQQ-like domai 97.3 0.073 1.6E-06 46.4 20.5 173 71-310 35-219 (238)
88 COG4946 Uncharacterized protei 97.3 0.035 7.6E-07 52.6 18.6 188 67-323 326-519 (668)
89 smart00135 LY Low-density lipo 97.3 0.0008 1.7E-08 42.0 5.7 38 242-279 4-41 (43)
90 COG3204 Uncharacterized protei 97.3 0.021 4.5E-07 51.1 16.3 72 61-138 127-210 (316)
91 KOG0266|consensus 97.3 0.031 6.6E-07 54.5 18.6 155 60-277 201-364 (456)
92 COG3292 Predicted periplasmic 97.2 0.0031 6.8E-08 60.8 10.5 137 114-313 167-310 (671)
93 KOG1446|consensus 97.2 0.093 2E-06 47.1 19.0 142 112-278 101-263 (311)
94 TIGR03032 conserved hypothetic 97.2 0.011 2.4E-07 53.5 13.2 60 190-266 201-260 (335)
95 COG3292 Predicted periplasmic 97.1 0.026 5.6E-07 54.7 15.5 121 71-211 174-309 (671)
96 KOG0291|consensus 97.1 0.11 2.5E-06 51.8 20.2 181 72-313 404-603 (893)
97 PF13449 Phytase-like: Esteras 97.1 0.03 6.6E-07 52.0 15.8 139 113-278 86-252 (326)
98 PF05787 DUF839: Bacterial pro 97.0 0.0077 1.7E-07 59.4 12.1 120 190-310 348-520 (524)
99 COG0823 TolB Periplasmic compo 97.0 0.052 1.1E-06 52.2 17.1 109 116-276 242-357 (425)
100 KOG0279|consensus 97.0 0.18 3.9E-06 44.7 18.4 173 73-310 29-210 (315)
101 PF13360 PQQ_2: PQQ-like domai 97.0 0.2 4.4E-06 43.6 19.4 156 69-278 73-231 (238)
102 KOG2055|consensus 97.0 0.1 2.3E-06 49.2 17.7 143 116-312 262-406 (514)
103 PF02333 Phytase: Phytase; In 97.0 0.11 2.3E-06 49.0 18.0 67 246-313 207-281 (381)
104 PF08662 eIF2A: Eukaryotic tra 96.9 0.12 2.6E-06 44.2 17.1 113 113-279 61-181 (194)
105 KOG1446|consensus 96.9 0.3 6.5E-06 44.0 19.6 179 110-313 13-209 (311)
106 PF13449 Phytase-like: Esteras 96.9 0.088 1.9E-06 48.9 17.1 111 193-312 86-234 (326)
107 TIGR03300 assembly_YfgL outer 96.8 0.2 4.4E-06 47.2 19.6 69 68-148 61-131 (377)
108 KOG0282|consensus 96.8 0.018 3.9E-07 54.3 11.4 146 111-310 299-450 (503)
109 KOG0266|consensus 96.8 0.36 7.9E-06 47.0 21.0 145 113-312 205-355 (456)
110 PTZ00421 coronin; Provisional 96.7 0.63 1.4E-05 45.8 22.4 150 73-279 139-292 (493)
111 KOG0315|consensus 96.7 0.16 3.5E-06 44.4 15.8 174 77-313 15-188 (311)
112 COG3211 PhoX Predicted phospha 96.7 0.031 6.7E-07 54.3 12.5 135 190-329 415-593 (616)
113 PRK11138 outer membrane biogen 96.7 0.079 1.7E-06 50.5 15.7 64 70-145 254-317 (394)
114 KOG0272|consensus 96.6 0.064 1.4E-06 50.0 13.7 146 109-311 259-407 (459)
115 PRK11138 outer membrane biogen 96.6 0.22 4.8E-06 47.4 18.2 78 69-148 66-146 (394)
116 KOG0263|consensus 96.6 0.11 2.4E-06 51.9 16.0 105 191-313 535-640 (707)
117 KOG0286|consensus 96.6 0.51 1.1E-05 42.3 21.1 173 67-305 150-328 (343)
118 PF08662 eIF2A: Eukaryotic tra 96.6 0.18 3.8E-06 43.1 15.6 100 194-313 62-164 (194)
119 KOG2055|consensus 96.6 0.082 1.8E-06 49.8 14.1 152 110-276 343-511 (514)
120 KOG0303|consensus 96.5 0.19 4.1E-06 46.7 15.5 149 72-279 144-296 (472)
121 KOG1539|consensus 96.5 0.49 1.1E-05 48.0 19.5 174 71-276 459-647 (910)
122 cd00216 PQQ_DH Dehydrogenases 96.4 0.45 9.7E-06 46.8 19.5 84 225-313 364-458 (488)
123 KOG2139|consensus 96.4 0.21 4.5E-06 46.0 15.0 148 114-313 198-366 (445)
124 COG3490 Uncharacterized protei 96.3 0.15 3.3E-06 45.5 13.7 60 197-266 119-181 (366)
125 PTZ00420 coronin; Provisional 96.3 1.3 2.8E-05 44.3 23.8 151 65-278 77-249 (568)
126 TIGR03300 assembly_YfgL outer 96.3 0.4 8.8E-06 45.2 18.0 97 122-278 241-339 (377)
127 COG4946 Uncharacterized protei 96.3 0.19 4.1E-06 47.8 14.9 111 108-267 398-509 (668)
128 KOG1215|consensus 96.3 0.2 4.3E-06 53.0 17.1 176 72-311 448-629 (877)
129 PTZ00421 coronin; Provisional 96.2 1.4 3E-05 43.5 25.1 150 66-277 79-245 (493)
130 KOG0279|consensus 96.2 0.87 1.9E-05 40.6 17.6 194 54-313 55-253 (315)
131 PRK13616 lipoprotein LpqB; Pro 96.1 0.77 1.7E-05 46.2 19.3 110 195-311 400-515 (591)
132 KOG2106|consensus 96.1 1.5 3.2E-05 42.3 20.4 55 223-278 424-478 (626)
133 KOG0289|consensus 96.1 0.3 6.5E-06 45.9 14.6 144 67-274 352-502 (506)
134 KOG0278|consensus 96.0 0.82 1.8E-05 40.2 15.9 138 72-276 155-296 (334)
135 cd00216 PQQ_DH Dehydrogenases 95.9 0.52 1.1E-05 46.3 17.0 79 70-149 59-137 (488)
136 KOG0289|consensus 95.8 1.7 3.8E-05 41.0 18.9 143 114-311 306-451 (506)
137 PF14269 Arylsulfotran_2: Aryl 95.7 1.1 2.5E-05 40.9 17.1 133 113-278 145-290 (299)
138 PF06433 Me-amine-dh_H: Methyl 95.6 0.057 1.2E-06 49.7 8.1 99 203-313 3-116 (342)
139 KOG1273|consensus 95.5 1.2 2.6E-05 40.4 15.6 224 66-313 27-270 (405)
140 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.5 1.4 3.1E-05 43.8 18.1 78 70-148 67-146 (527)
141 KOG1274|consensus 95.4 1.4 3E-05 45.2 17.5 144 69-278 63-219 (933)
142 PF02333 Phytase: Phytase; In 95.4 0.44 9.5E-06 44.9 13.4 84 228-313 130-229 (381)
143 PF14583 Pectate_lyase22: Olig 95.4 0.11 2.3E-06 48.8 9.1 126 116-278 85-225 (386)
144 PRK13684 Ycf48-like protein; P 95.3 2.5 5.5E-05 39.3 24.9 22 1-22 1-22 (334)
145 KOG0263|consensus 95.2 0.64 1.4E-05 46.6 14.3 113 112-278 536-650 (707)
146 PF06433 Me-amine-dh_H: Methyl 95.2 0.11 2.4E-06 47.9 8.5 111 123-279 3-128 (342)
147 TIGR02276 beta_rpt_yvtn 40-res 95.2 0.1 2.2E-06 32.2 6.0 42 256-301 1-42 (42)
148 KOG0271|consensus 95.2 0.82 1.8E-05 42.5 13.9 73 192-279 368-441 (480)
149 PTZ00420 coronin; Provisional 95.2 3.2 7E-05 41.5 19.3 62 74-145 139-202 (568)
150 COG3490 Uncharacterized protei 95.1 0.66 1.4E-05 41.6 12.7 171 112-313 162-340 (366)
151 PF00058 Ldl_recept_b: Low-den 95.1 0.086 1.9E-06 33.0 5.4 41 203-256 1-42 (42)
152 PF00058 Ldl_recept_b: Low-den 95.0 0.059 1.3E-06 33.7 4.5 40 260-302 2-42 (42)
153 COG1520 FOG: WD40-like repeat 94.9 2.8 6E-05 39.5 17.5 72 70-148 66-137 (370)
154 PLN00181 protein SPA1-RELATED; 94.5 7.4 0.00016 40.8 23.6 173 73-311 546-727 (793)
155 KOG2048|consensus 94.5 5.3 0.00011 39.8 18.2 56 223-279 221-277 (691)
156 PF00930 DPPIV_N: Dipeptidyl p 94.4 2.5 5.4E-05 39.6 15.8 86 227-317 260-352 (353)
157 KOG0271|consensus 94.3 0.89 1.9E-05 42.2 11.9 138 74-275 338-478 (480)
158 KOG0299|consensus 94.3 1.9 4.1E-05 40.9 14.2 64 248-313 382-447 (479)
159 KOG0288|consensus 94.2 2.2 4.8E-05 40.0 14.3 109 109-266 339-451 (459)
160 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.2 6.5 0.00014 39.1 20.5 81 225-313 439-524 (527)
161 TIGR02276 beta_rpt_yvtn 40-res 94.1 0.21 4.6E-06 30.6 5.6 40 202-255 2-42 (42)
162 KOG0278|consensus 94.0 3.8 8.2E-05 36.2 14.6 67 193-278 186-255 (334)
163 KOG0646|consensus 93.9 4.3 9.4E-05 38.6 15.7 86 192-278 218-308 (476)
164 KOG0282|consensus 93.8 1.2 2.5E-05 42.6 11.9 175 65-272 302-500 (503)
165 KOG0286|consensus 93.8 4.9 0.00011 36.2 20.6 221 56-311 49-292 (343)
166 KOG1215|consensus 93.6 1.7 3.6E-05 46.1 14.4 151 62-276 479-638 (877)
167 KOG1407|consensus 93.5 5.2 0.00011 35.5 18.1 180 62-310 20-207 (313)
168 COG3823 Glutamine cyclotransfe 93.4 0.7 1.5E-05 39.6 8.8 63 122-211 185-249 (262)
169 KOG0296|consensus 93.3 6.9 0.00015 36.3 19.2 53 223-276 344-397 (399)
170 KOG1539|consensus 93.3 7.4 0.00016 39.9 17.0 81 228-313 557-638 (910)
171 PF01731 Arylesterase: Arylest 93.2 0.34 7.3E-06 35.5 6.0 46 81-138 35-82 (86)
172 KOG4441|consensus 93.1 3.9 8.4E-05 41.1 15.3 153 66-278 326-500 (571)
173 COG1520 FOG: WD40-like repeat 92.9 2.1 4.5E-05 40.4 12.6 28 118-145 64-91 (370)
174 KOG0643|consensus 92.9 6.6 0.00014 35.0 18.0 178 72-313 22-211 (327)
175 COG5276 Uncharacterized conser 92.8 7.4 0.00016 35.3 19.2 37 112-149 129-165 (370)
176 PF14583 Pectate_lyase22: Olig 92.8 0.7 1.5E-05 43.5 8.8 82 227-313 60-145 (386)
177 KOG0272|consensus 92.7 3.8 8.2E-05 38.6 13.2 145 111-310 303-448 (459)
178 smart00135 LY Low-density lipo 92.6 0.3 6.5E-06 29.9 4.5 32 110-141 7-40 (43)
179 PLN00181 protein SPA1-RELATED; 92.0 18 0.00038 38.0 23.1 155 67-278 488-649 (793)
180 COG4247 Phy 3-phytase (myo-ino 92.0 8.6 0.00019 34.2 18.7 30 248-278 206-235 (364)
181 KOG2111|consensus 91.9 9.8 0.00021 34.7 18.1 71 194-279 184-258 (346)
182 KOG0293|consensus 91.8 5.3 0.00012 37.7 13.0 182 63-275 313-511 (519)
183 KOG0294|consensus 91.6 11 0.00023 34.5 16.5 69 194-278 130-198 (362)
184 smart00284 OLF Olfactomedin-li 91.6 9.5 0.00021 34.0 17.8 161 64-276 76-251 (255)
185 KOG0645|consensus 91.5 9.9 0.00021 34.0 21.7 113 114-277 64-180 (312)
186 KOG0973|consensus 91.3 13 0.00027 39.1 16.4 91 72-174 140-234 (942)
187 KOG0293|consensus 91.3 3.1 6.6E-05 39.2 10.9 112 112-278 313-426 (519)
188 KOG1274|consensus 91.2 13 0.00028 38.6 16.0 119 112-277 139-262 (933)
189 PF14517 Tachylectin: Tachylec 90.8 1.7 3.7E-05 37.9 8.5 78 52-137 70-155 (229)
190 KOG2096|consensus 90.8 6.7 0.00014 35.9 12.3 64 246-313 331-394 (420)
191 PF08553 VID27: VID27 cytoplas 90.6 6.4 0.00014 40.9 13.7 66 194-276 580-646 (794)
192 PF05694 SBP56: 56kDa selenium 90.6 1.1 2.3E-05 42.8 7.6 66 248-313 313-395 (461)
193 KOG0316|consensus 90.6 9 0.00019 33.6 12.4 136 77-277 76-213 (307)
194 COG0823 TolB Periplasmic compo 90.5 7.7 0.00017 37.4 13.5 53 228-280 263-317 (425)
195 KOG2110|consensus 90.5 15 0.00032 34.2 18.0 70 194-278 176-249 (391)
196 KOG0283|consensus 90.4 14 0.00029 37.7 15.3 147 72-277 421-576 (712)
197 PHA02713 hypothetical protein; 90.3 8 0.00017 38.8 14.1 65 202-277 463-533 (557)
198 PHA02713 hypothetical protein; 90.1 13 0.00028 37.3 15.3 49 227-278 432-489 (557)
199 KOG0771|consensus 90.1 7 0.00015 36.7 12.2 64 243-309 278-341 (398)
200 KOG2048|consensus 90.1 22 0.00049 35.6 20.0 86 228-313 406-496 (691)
201 KOG4378|consensus 89.9 9.4 0.0002 36.9 13.0 72 194-279 211-282 (673)
202 PF05694 SBP56: 56kDa selenium 89.6 0.84 1.8E-05 43.5 6.0 62 192-267 312-394 (461)
203 PF02191 OLF: Olfactomedin-lik 89.4 15 0.00033 32.7 18.0 162 63-276 70-246 (250)
204 KOG0319|consensus 89.3 7.1 0.00015 39.4 12.2 134 117-305 25-160 (775)
205 KOG0292|consensus 89.2 19 0.00041 37.5 15.3 58 72-138 262-321 (1202)
206 PRK13684 Ycf48-like protein; P 88.8 20 0.00043 33.3 23.3 19 192-210 215-233 (334)
207 TIGR03074 PQQ_membr_DH membran 88.8 32 0.0007 35.9 17.3 185 72-278 260-478 (764)
208 PF14517 Tachylectin: Tachylec 88.7 3.1 6.8E-05 36.3 8.5 69 191-276 129-205 (229)
209 PF06739 SBBP: Beta-propeller 88.7 0.33 7.2E-06 29.6 1.8 20 192-211 13-32 (38)
210 PF06739 SBBP: Beta-propeller 88.6 0.44 9.5E-06 29.0 2.3 19 112-130 13-31 (38)
211 PF02897 Peptidase_S9_N: Proly 88.6 15 0.00032 35.0 14.2 113 196-313 174-297 (414)
212 KOG0973|consensus 88.4 19 0.00041 37.9 15.0 105 112-269 130-242 (942)
213 KOG2139|consensus 88.3 8.9 0.00019 35.6 11.4 104 192-312 196-301 (445)
214 KOG2110|consensus 88.2 8.1 0.00018 35.9 11.0 61 74-143 144-207 (391)
215 KOG2919|consensus 87.9 22 0.00047 32.7 14.5 28 250-277 254-281 (406)
216 PHA02790 Kelch-like protein; P 87.9 29 0.00062 34.1 16.2 47 228-277 416-470 (480)
217 KOG3881|consensus 87.9 7.8 0.00017 36.2 10.8 63 73-144 216-281 (412)
218 KOG0772|consensus 87.6 30 0.00064 33.9 16.0 150 113-275 319-485 (641)
219 KOG4441|consensus 87.6 16 0.00034 36.8 13.9 109 116-276 422-545 (571)
220 TIGR03074 PQQ_membr_DH membran 87.5 31 0.00068 36.0 16.3 75 71-148 193-286 (764)
221 KOG0772|consensus 87.5 30 0.00065 33.8 15.3 193 72-313 179-385 (641)
222 PF14339 DUF4394: Domain of un 87.3 20 0.00043 31.6 12.7 36 112-147 27-63 (236)
223 KOG0313|consensus 87.2 26 0.00056 32.8 14.4 165 60-278 191-377 (423)
224 KOG3914|consensus 87.0 3.8 8.3E-05 38.2 8.3 52 224-276 126-180 (390)
225 PF00930 DPPIV_N: Dipeptidyl p 86.8 6.6 0.00014 36.7 10.3 60 196-265 285-346 (353)
226 KOG0265|consensus 86.4 16 0.00034 33.2 11.5 71 193-277 92-163 (338)
227 KOG0275|consensus 86.2 8.3 0.00018 35.2 9.8 24 114-137 309-332 (508)
228 KOG3881|consensus 86.2 5.6 0.00012 37.1 8.9 86 223-312 222-310 (412)
229 KOG0268|consensus 86.1 19 0.0004 33.6 12.1 65 245-313 186-250 (433)
230 PF07494 Reg_prop: Two compone 86.1 0.9 1.9E-05 24.5 2.4 17 295-311 7-23 (24)
231 KOG0273|consensus 85.5 36 0.00078 32.8 14.9 141 112-311 236-378 (524)
232 KOG0265|consensus 85.2 29 0.00063 31.5 15.4 68 71-147 57-127 (338)
233 PF05935 Arylsulfotrans: Aryls 85.0 32 0.0007 33.7 14.4 35 115-150 193-241 (477)
234 KOG1009|consensus 84.8 19 0.00041 34.0 11.6 53 193-259 125-178 (434)
235 KOG0319|consensus 84.7 44 0.00094 34.1 14.8 150 68-278 25-180 (775)
236 KOG0299|consensus 84.7 38 0.00083 32.5 14.1 73 193-277 382-456 (479)
237 KOG2321|consensus 83.9 48 0.001 32.9 15.2 68 191-275 228-299 (703)
238 KOG1407|consensus 83.8 32 0.00069 30.8 14.3 59 72-140 77-136 (313)
239 PF02897 Peptidase_S9_N: Proly 83.5 12 0.00027 35.6 10.7 107 194-313 126-248 (414)
240 KOG0639|consensus 83.0 13 0.00029 36.0 10.2 70 193-277 511-581 (705)
241 KOG2321|consensus 82.8 24 0.00052 34.9 11.8 152 72-276 187-342 (703)
242 KOG4649|consensus 82.7 36 0.00077 30.5 14.5 68 71-147 104-172 (354)
243 PHA03098 kelch-like protein; P 82.4 54 0.0012 32.5 17.2 68 201-278 388-465 (534)
244 COG4247 Phy 3-phytase (myo-ino 82.3 36 0.00079 30.4 15.3 28 113-140 206-234 (364)
245 KOG1963|consensus 81.8 55 0.0012 33.8 14.5 32 112-143 252-284 (792)
246 KOG0306|consensus 81.6 67 0.0015 33.0 17.2 191 64-313 375-571 (888)
247 KOG0281|consensus 81.5 13 0.00028 34.4 9.1 49 228-278 341-389 (499)
248 KOG1009|consensus 81.3 50 0.0011 31.3 15.1 56 112-174 124-180 (434)
249 KOG0310|consensus 80.4 58 0.0013 31.5 15.2 128 72-267 165-300 (487)
250 KOG0646|consensus 80.3 55 0.0012 31.5 13.0 142 114-313 84-239 (476)
251 KOG1273|consensus 80.2 48 0.001 30.5 15.2 182 66-277 69-280 (405)
252 KOG0643|consensus 80.2 44 0.00096 30.0 15.5 45 223-268 165-211 (327)
253 PF08553 VID27: VID27 cytoplas 80.1 15 0.00033 38.2 10.2 27 115-141 581-607 (794)
254 PHA03098 kelch-like protein; P 80.0 65 0.0014 31.9 15.6 68 201-277 436-511 (534)
255 KOG2919|consensus 79.6 23 0.00049 32.6 9.9 104 191-313 158-272 (406)
256 PF05935 Arylsulfotrans: Aryls 79.5 66 0.0014 31.6 16.6 30 248-277 272-301 (477)
257 KOG3914|consensus 79.3 29 0.00064 32.6 10.8 73 191-278 151-224 (390)
258 PF15284 PAGK: Phage-encoded v 79.0 2.3 5E-05 28.5 2.7 22 1-22 1-22 (61)
259 KOG1408|consensus 78.4 20 0.00042 36.5 9.9 111 193-318 80-191 (1080)
260 KOG0264|consensus 78.1 65 0.0014 30.7 14.5 71 193-277 274-347 (422)
261 PLN00033 photosystem II stabil 77.8 67 0.0015 30.7 15.9 19 193-211 282-300 (398)
262 KOG1538|consensus 76.9 9.1 0.0002 38.5 7.1 66 191-273 12-79 (1081)
263 KOG0296|consensus 76.8 65 0.0014 30.1 19.5 54 224-278 167-221 (399)
264 PF14870 PSII_BNR: Photosynthe 76.2 63 0.0014 29.6 18.5 62 248-313 146-207 (302)
265 KOG0771|consensus 76.0 72 0.0016 30.2 12.9 73 190-277 280-354 (398)
266 KOG0281|consensus 75.9 25 0.00054 32.6 9.2 169 69-311 204-377 (499)
267 KOG2315|consensus 75.9 86 0.0019 31.0 13.6 71 194-279 314-392 (566)
268 KOG0316|consensus 75.5 57 0.0012 28.8 16.3 170 71-310 27-201 (307)
269 KOG0273|consensus 74.5 87 0.0019 30.4 18.1 67 195-276 456-522 (524)
270 PRK13616 lipoprotein LpqB; Pro 74.3 1E+02 0.0023 31.2 21.3 77 193-280 449-530 (591)
271 KOG0918|consensus 74.1 17 0.00038 34.3 7.9 20 248-267 390-409 (476)
272 PF14269 Arylsulfotran_2: Aryl 73.8 46 0.00099 30.5 10.7 39 191-243 143-181 (299)
273 PHA02790 Kelch-like protein; P 73.7 95 0.0021 30.4 16.3 91 201-312 361-455 (480)
274 KOG0639|consensus 73.6 53 0.0011 32.1 11.0 62 72-142 521-583 (705)
275 KOG1036|consensus 73.1 62 0.0013 29.5 10.8 28 114-141 16-44 (323)
276 PF10647 Gmad1: Lipoprotein Lp 72.9 68 0.0015 28.4 19.9 104 197-313 71-186 (253)
277 KOG0283|consensus 72.8 1.2E+02 0.0026 31.2 17.6 72 67-148 374-448 (712)
278 KOG0294|consensus 72.7 78 0.0017 29.1 17.9 173 74-278 99-282 (362)
279 smart00564 PQQ beta-propeller 71.4 6.9 0.00015 22.2 3.2 26 121-146 5-30 (33)
280 KOG1408|consensus 71.3 54 0.0012 33.6 10.9 113 114-277 599-713 (1080)
281 PF10647 Gmad1: Lipoprotein Lp 70.3 78 0.0017 28.1 20.1 34 246-279 165-199 (253)
282 KOG0310|consensus 70.0 1.1E+02 0.0024 29.7 19.0 181 64-313 111-301 (487)
283 KOG0640|consensus 69.7 62 0.0013 29.7 10.0 63 113-211 218-281 (430)
284 KOG0268|consensus 69.3 58 0.0013 30.5 10.0 52 225-277 208-259 (433)
285 KOG0649|consensus 69.2 83 0.0018 27.9 13.1 36 114-149 117-153 (325)
286 KOG0308|consensus 68.5 1.4E+02 0.003 30.2 16.9 71 71-143 128-204 (735)
287 KOG0301|consensus 68.4 1.4E+02 0.0031 30.4 16.1 65 194-275 182-246 (745)
288 KOG0284|consensus 68.2 78 0.0017 30.1 10.7 148 67-277 185-337 (464)
289 PF13570 PQQ_3: PQQ-like domai 67.1 11 0.00024 22.7 3.6 22 68-89 17-38 (40)
290 KOG2096|consensus 67.1 1.1E+02 0.0023 28.4 13.1 47 228-275 210-256 (420)
291 TIGR03803 Gloeo_Verruco Gloeo_ 66.9 18 0.00038 21.4 4.2 31 202-242 1-31 (34)
292 KOG0276|consensus 66.8 1.5E+02 0.0032 30.0 16.6 116 160-277 352-492 (794)
293 PF14870 PSII_BNR: Photosynthe 66.1 1.1E+02 0.0024 28.1 17.9 27 247-275 187-213 (302)
294 KOG3567|consensus 65.8 1.4E+02 0.0029 29.1 13.1 68 64-131 169-238 (501)
295 KOG0650|consensus 65.2 1.6E+02 0.0034 29.7 13.4 49 228-277 588-637 (733)
296 KOG0308|consensus 63.0 1.5E+02 0.0033 30.0 12.1 153 72-276 84-242 (735)
297 KOG1272|consensus 61.4 1.6E+02 0.0035 28.6 12.0 83 223-310 269-352 (545)
298 PRK10115 protease 2; Provision 61.1 92 0.002 32.2 11.0 75 192-279 127-209 (686)
299 KOG4378|consensus 60.3 35 0.00075 33.3 7.0 85 224-312 184-270 (673)
300 KOG4497|consensus 59.9 85 0.0018 29.1 9.1 77 226-307 70-148 (447)
301 KOG0918|consensus 59.9 28 0.0006 33.0 6.2 64 250-313 315-410 (476)
302 KOG2394|consensus 59.7 37 0.0008 33.4 7.2 70 193-277 292-362 (636)
303 PRK10299 PhoPQ regulatory prot 57.9 6.8 0.00015 24.7 1.4 21 1-22 1-21 (47)
304 COG1770 PtrB Protease II [Amin 57.8 1.7E+02 0.0036 29.9 11.5 87 190-289 127-220 (682)
305 KOG0275|consensus 57.4 1.6E+02 0.0035 27.2 14.3 52 252-307 443-494 (508)
306 PF01011 PQQ: PQQ enzyme repea 57.3 15 0.00032 22.0 2.9 27 123-149 1-27 (38)
307 KOG0288|consensus 57.1 1.8E+02 0.004 27.7 12.9 73 193-281 343-421 (459)
308 KOG1036|consensus 56.8 1.6E+02 0.0034 27.0 15.5 179 72-278 25-208 (323)
309 COG4993 Gcd Glucose dehydrogen 56.2 2.4E+02 0.0051 28.8 18.1 96 50-148 183-298 (773)
310 KOG4547|consensus 56.1 2.2E+02 0.0047 28.3 14.3 88 219-310 72-162 (541)
311 KOG4649|consensus 55.8 1.6E+02 0.0034 26.6 14.7 37 112-148 13-49 (354)
312 KOG0285|consensus 55.6 69 0.0015 30.0 7.9 73 191-278 151-224 (460)
313 KOG2106|consensus 54.1 2.3E+02 0.0049 28.0 20.0 88 72-174 212-302 (626)
314 KOG0292|consensus 54.1 3E+02 0.0065 29.3 17.6 173 112-313 136-313 (1202)
315 PRK12694 flgG flagellar basal 52.3 71 0.0015 28.6 7.6 14 195-208 147-160 (260)
316 KOG0295|consensus 51.7 86 0.0019 29.4 7.9 141 117-312 114-255 (406)
317 COG5276 Uncharacterized conser 51.6 2E+02 0.0043 26.5 17.6 27 115-142 175-201 (370)
318 KOG0306|consensus 51.5 3E+02 0.0065 28.6 18.3 83 228-313 172-265 (888)
319 PF07676 PD40: WD40-like Beta 51.0 34 0.00073 20.2 3.8 19 249-267 11-29 (39)
320 PRK13791 lysozyme inhibitor; P 50.7 1.1E+02 0.0025 23.5 7.4 18 1-18 1-18 (113)
321 PLN00033 photosystem II stabil 49.3 2.5E+02 0.0053 26.9 17.7 26 112-137 281-306 (398)
322 PF14339 DUF4394: Domain of un 48.8 1.9E+02 0.0041 25.5 18.9 67 71-145 37-108 (236)
323 COG4447 Uncharacterized protei 48.5 1E+02 0.0022 27.9 7.7 22 246-267 170-191 (339)
324 PF15416 DUF4623: Domain of un 48.0 2.1E+02 0.0045 26.7 9.6 80 191-279 182-273 (442)
325 KOG4547|consensus 47.3 3E+02 0.0065 27.4 18.6 117 75-255 73-193 (541)
326 KOG2394|consensus 46.9 75 0.0016 31.4 7.0 21 191-211 332-352 (636)
327 KOG2395|consensus 46.5 1.5E+02 0.0032 29.4 8.9 34 114-147 433-466 (644)
328 PRK13613 lipoprotein LpqB; Pro 46.2 3.4E+02 0.0073 27.6 13.2 79 193-279 456-541 (599)
329 PRK12816 flgG flagellar basal 46.1 1E+02 0.0022 27.6 7.6 14 195-208 149-162 (264)
330 KOG0641|consensus 43.8 2.3E+02 0.0049 24.9 19.7 87 178-279 216-305 (350)
331 KOG2395|consensus 42.6 3.6E+02 0.0078 26.9 17.2 148 112-276 333-499 (644)
332 PF15390 DUF4613: Domain of un 42.5 2E+02 0.0043 29.1 9.2 68 243-310 335-402 (671)
333 TIGR02488 flgG_G_neg flagellar 41.9 1.3E+02 0.0027 26.9 7.5 14 195-208 145-158 (259)
334 KOG1538|consensus 41.6 4.1E+02 0.009 27.3 15.5 61 248-313 224-285 (1081)
335 smart00284 OLF Olfactomedin-li 40.9 2.7E+02 0.0058 24.9 15.4 24 122-145 83-107 (255)
336 KOG1063|consensus 40.8 2.6E+02 0.0056 28.7 9.8 54 74-133 281-338 (764)
337 PRK12691 flgG flagellar basal 40.4 1.3E+02 0.0029 26.8 7.5 14 195-208 147-160 (262)
338 PRK12690 flgF flagellar basal 39.1 1.7E+02 0.0037 25.8 7.8 18 112-129 76-93 (238)
339 PRK12817 flgG flagellar basal 39.1 2.2E+02 0.0048 25.4 8.6 15 195-209 152-166 (260)
340 PF00400 WD40: WD domain, G-be 39.0 77 0.0017 18.2 5.6 31 244-275 9-39 (39)
341 KOG2314|consensus 38.9 2.1E+02 0.0045 28.6 8.6 64 247-313 493-558 (698)
342 TIGR02171 Fb_sc_TIGR02171 Fibr 38.7 2.8E+02 0.0061 29.5 10.1 87 225-313 327-422 (912)
343 KOG1445|consensus 38.2 4.6E+02 0.0099 26.9 11.7 76 254-331 821-903 (1012)
344 KOG4283|consensus 38.1 3.2E+02 0.007 25.1 12.4 28 248-276 248-275 (397)
345 PRK12693 flgG flagellar basal 38.0 1.8E+02 0.0039 25.9 7.9 17 112-128 90-106 (261)
346 KOG0307|consensus 38.0 2E+02 0.0044 30.9 9.0 62 73-140 81-147 (1049)
347 PF08309 LVIVD: LVIVD repeat; 37.7 83 0.0018 19.5 4.0 26 114-140 4-29 (42)
348 PF10913 DUF2706: Protein of u 36.4 49 0.0011 21.5 2.8 17 7-23 4-20 (60)
349 PF07172 GRP: Glycine rich pro 35.1 32 0.0007 25.6 2.2 17 6-22 4-20 (95)
350 KOG4532|consensus 35.1 3.5E+02 0.0075 24.6 10.2 29 249-278 161-189 (344)
351 TIGR03548 mutarot_permut cycli 35.0 3.5E+02 0.0076 24.6 11.9 27 122-148 123-155 (323)
352 KOG0284|consensus 33.9 4.3E+02 0.0094 25.3 10.6 49 228-277 245-294 (464)
353 PF03178 CPSF_A: CPSF A subuni 33.4 3.7E+02 0.008 24.4 13.0 72 66-149 92-168 (321)
354 KOG0650|consensus 33.4 5.3E+02 0.011 26.2 14.2 59 248-313 568-629 (733)
355 TIGR03548 mutarot_permut cycli 33.4 3.7E+02 0.0081 24.4 14.6 28 121-148 170-202 (323)
356 KOG0264|consensus 33.3 4.5E+02 0.0097 25.3 10.1 53 226-278 249-304 (422)
357 KOG3567|consensus 33.3 53 0.0012 31.7 3.8 50 228-278 446-497 (501)
358 KOG4328|consensus 33.2 3.9E+02 0.0085 26.0 9.3 36 112-148 235-273 (498)
359 PRK12689 flgF flagellar basal 33.0 2.2E+02 0.0048 25.3 7.6 17 112-128 82-98 (253)
360 PRK12636 flgG flagellar basal 32.5 2.2E+02 0.0048 25.4 7.5 17 112-128 89-105 (263)
361 KOG0285|consensus 32.1 4.4E+02 0.0096 24.9 13.9 113 111-277 151-265 (460)
362 PRK12819 flgG flagellar basal 31.8 2.5E+02 0.0054 25.0 7.7 14 195-208 148-161 (257)
363 PRK12692 flgG flagellar basal 31.4 2.3E+02 0.0049 25.4 7.4 14 195-208 147-160 (262)
364 KOG0301|consensus 31.3 6E+02 0.013 26.1 15.2 66 71-147 150-215 (745)
365 PRK12641 flgF flagellar basal 31.2 2.7E+02 0.0058 24.8 7.8 14 195-208 131-144 (252)
366 PF12894 Apc4_WD40: Anaphase-p 31.1 1.2E+02 0.0026 19.2 4.1 30 249-279 14-43 (47)
367 KOG1272|consensus 30.9 3.2E+02 0.007 26.6 8.4 33 111-143 209-242 (545)
368 PF08525 OapA_N: Opacity-assoc 30.3 80 0.0017 18.0 2.8 18 5-22 11-28 (30)
369 COG3470 Tpd Uncharacterized pr 29.7 71 0.0015 26.1 3.4 13 29-41 26-38 (179)
370 KOG1445|consensus 28.9 3.6E+02 0.0078 27.6 8.6 68 194-276 723-797 (1012)
371 PF11768 DUF3312: Protein of u 28.7 6.1E+02 0.013 25.4 15.5 51 225-277 279-329 (545)
372 KOG1310|consensus 28.4 5.9E+02 0.013 25.6 9.8 39 109-147 48-87 (758)
373 KOG1963|consensus 28.0 7.3E+02 0.016 26.1 17.4 68 240-312 245-312 (792)
374 PRK12818 flgG flagellar basal 27.9 2.7E+02 0.0058 24.8 7.2 18 112-129 90-107 (256)
375 PRK12640 flgF flagellar basal 27.6 3.1E+02 0.0067 24.3 7.5 14 195-208 134-147 (246)
376 KOG0307|consensus 27.6 3.8E+02 0.0082 29.0 9.0 55 225-279 274-329 (1049)
377 KOG0641|consensus 27.3 4.3E+02 0.0093 23.2 17.1 32 249-281 234-265 (350)
378 COG4246 Uncharacterized protei 27.1 4E+02 0.0086 24.1 7.8 80 191-278 73-164 (340)
379 KOG0274|consensus 27.1 6.5E+02 0.014 25.2 14.1 151 67-283 336-488 (537)
380 KOG0321|consensus 26.5 7.1E+02 0.015 25.4 12.1 77 68-144 224-305 (720)
381 PF05567 Neisseria_PilC: Neiss 25.9 2.1E+02 0.0045 26.6 6.4 85 226-313 180-278 (335)
382 TIGR02608 delta_60_rpt delta-6 25.9 1.5E+02 0.0031 19.7 3.9 31 249-279 3-39 (55)
383 KOG4532|consensus 25.3 5.2E+02 0.011 23.5 15.5 44 224-267 271-323 (344)
384 KOG1645|consensus 25.0 3.5E+02 0.0077 25.9 7.5 51 228-278 217-267 (463)
385 PF12354 Internalin_N: Bacteri 24.9 17 0.00038 24.3 -0.7 20 21-40 22-41 (57)
386 PF07250 Glyoxal_oxid_N: Glyox 24.7 4.9E+02 0.011 23.0 13.1 107 193-313 68-190 (243)
387 PF11768 DUF3312: Protein of u 24.6 4.9E+02 0.011 26.0 8.7 59 72-142 271-331 (545)
388 PF04762 IKI3: IKI3 family; I 24.4 3.3E+02 0.0071 29.4 8.2 51 224-275 94-148 (928)
389 PF15232 DUF4585: Domain of un 23.8 2.1E+02 0.0046 20.2 4.5 35 114-148 7-45 (75)
390 KOG0322|consensus 23.7 2.3E+02 0.005 25.6 5.7 68 193-275 253-321 (323)
391 PRK14131 N-acetylneuraminic ac 23.5 6.1E+02 0.013 23.7 14.5 39 227-266 189-229 (376)
392 PF03178 CPSF_A: CPSF A subuni 23.3 5.6E+02 0.012 23.2 14.9 69 194-277 132-202 (321)
393 PF13964 Kelch_6: Kelch motif 23.0 1.7E+02 0.0037 18.1 3.8 34 201-242 10-43 (50)
394 COG4222 Uncharacterized protei 22.6 6.9E+02 0.015 23.9 9.5 51 262-312 159-219 (391)
395 COG5134 Uncharacterized conser 22.5 1E+02 0.0022 26.6 3.2 31 109-140 83-113 (272)
396 KOG0640|consensus 22.4 6.3E+02 0.014 23.4 14.2 27 112-138 262-289 (430)
397 PF12275 DUF3616: Protein of u 21.9 2.6E+02 0.0056 26.1 6.1 61 250-313 3-78 (330)
398 PF02191 OLF: Olfactomedin-lik 21.7 5.7E+02 0.012 22.7 15.8 80 228-308 149-235 (250)
399 KOG4227|consensus 21.7 3.8E+02 0.0082 25.6 7.0 67 67-140 110-179 (609)
400 COG5510 Predicted small secret 21.6 1E+02 0.0022 19.3 2.3 12 4-15 2-13 (44)
401 PF11725 AvrE: Pathogenicity f 20.9 5.2E+02 0.011 29.7 8.7 138 114-276 365-515 (1774)
402 PF04571 Lipin_N: lipin, N-ter 20.7 3.9E+02 0.0085 20.5 5.8 64 190-265 23-88 (110)
403 PRK10115 protease 2; Provision 20.6 9.5E+02 0.021 24.8 16.2 73 195-276 175-254 (686)
404 PF06079 Apyrase: Apyrase; In 20.5 3.6E+02 0.0078 24.6 6.4 31 68-98 59-90 (291)
405 COG4068 Uncharacterized protei 20.4 1E+02 0.0023 20.6 2.3 21 4-24 40-60 (64)
406 PF13721 SecD-TM1: SecD export 20.4 2.1E+02 0.0045 21.5 4.3 32 4-35 7-38 (101)
407 KOG1310|consensus 20.2 6.5E+02 0.014 25.3 8.4 73 192-278 51-126 (758)
408 PF12869 tRNA_anti-like: tRNA_ 20.1 35 0.00075 27.2 0.0 14 1-14 1-14 (144)
No 1
>KOG1520|consensus
Probab=100.00 E-value=2.3e-42 Score=311.23 Aligned_cols=259 Identities=41% Similarity=0.667 Sum_probs=215.7
Q ss_pred CceeeeeCCCCCCcCcchhccccccCceeccCcccCccEEEeeCCe--EEEEecCcEEEEEeCCceeEEEecCcccc---
Q psy4771 29 DFTAFEVAPPRPLEGKLALNEKLNNAEKLFENEIHGPEAVVKHKGD--LYMGVDGGHILKLSGGKLVPVVKLGKDCY--- 103 (337)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~P~~i~~~~g~--ly~d~~~g~I~~~~~~~~~~~~~~g~~~~--- 103 (337)
.+..+...++.+..+.+.+++.+...|.+..+.+..|+.+.+.+|. +|+....|++-+.+.... .....|.
T Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s----~~~~~~~~~~ 106 (376)
T KOG1520|consen 31 GSPDDRLFSKLPLLGKLIPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDS----TNRSQCCDPG 106 (376)
T ss_pred CCchhcccCCCCcccccccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEecccc----ccccccCCCc
Confidence 3345555666667888889998888998888777777777774444 668888998888765311 1123333
Q ss_pred CccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeee
Q psy4771 104 GFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISM 182 (337)
Q Consensus 104 ~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~ 182 (337)
....++.|+||.||+++..| +|||||++.|++.|++++++.+.+.+ +.+|+
T Consensus 107 ~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~---~~~G~------------------------- 158 (376)
T KOG1520|consen 107 SFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLAD---EAEGK------------------------- 158 (376)
T ss_pred ceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccc---cccCe-------------------------
Confidence 34557899999999999998 99999999999999999988777665 44443
Q ss_pred ccccCCCCCCCCccEEEcCCCcEEEEcCCCCc--cCceeeee-ecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCC
Q psy4771 183 DTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY--KSGLFEGL-TSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADES 259 (337)
Q Consensus 183 ~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~--~~~~~~~~-~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~ 259 (337)
++.+.|++.|+++|.+||||++++| ++.+..++ .+++||+++||+.++.++++.+++.+|||+++|+|++
T Consensus 159 -------~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~s 231 (376)
T KOG1520|consen 159 -------PFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGS 231 (376)
T ss_pred -------eeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCC
Confidence 7889999999999999999999987 56666654 6799999999999999999999999999999999999
Q ss_pred EEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC--------CCCchhhccccCC
Q psy4771 260 FVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP--------VEQPSEQAGNIRD 326 (337)
Q Consensus 260 ~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~--------~~~p~~~~~~~~~ 326 (337)
++.+||+...||.||+++|.+.|+.++|++++||+||||+.+++|++|||..+. ..|||+++++.+.
T Consensus 232 fvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~ 306 (376)
T KOG1520|consen 232 FVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKL 306 (376)
T ss_pred EEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEecccchHHHhhhcChHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999887 4566666665555
No 2
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=8.1e-26 Score=205.36 Aligned_cols=211 Identities=29% Similarity=0.419 Sum_probs=157.2
Q ss_pred chhccccccCceeccCcccCccEEEeeCC-eEEEEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECC
Q psy4771 45 LALNEKLNNAEKLFENEIHGPEAVVKHKG-DLYMGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK 121 (337)
Q Consensus 45 ~~~~~~l~~~~~~~~g~~~~P~~i~~~~g-~ly~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~ 121 (337)
.++...+.....+.||++|.|+ .+ ++|+|+.+++|+++++. +.+.+. .....+.++.++.
T Consensus 14 ~~~~~~~~~~~~~gEgP~w~~~-----~~~L~w~DI~~~~i~r~~~~~g~~~~~~------------~p~~~~~~~~~d~ 76 (307)
T COG3386 14 AAPVTLLDKGATLGEGPVWDPD-----RGALLWVDILGGRIHRLDPETGKKRVFP------------SPGGFSSGALIDA 76 (307)
T ss_pred ccceeEeecccccccCccCcCC-----CCEEEEEeCCCCeEEEecCCcCceEEEE------------CCCCcccceeecC
Confidence 3445567778888999999887 44 45699999999999983 333332 2234588999999
Q ss_pred CCcEEEEECCCcEEEEEcCCCeE-EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEc
Q psy4771 122 NGALHVADAYFGLYKVNVTTGQT-EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVD 200 (337)
Q Consensus 122 ~G~lyVad~~~gv~~vd~~~g~~-~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd 200 (337)
.|+|++++ +++++++.+.+.. +.+.. ...+ .+.+.|||+.++
T Consensus 77 ~g~Lv~~~--~g~~~~~~~~~~~~t~~~~---~~~~--------------------------------~~~~r~ND~~v~ 119 (307)
T COG3386 77 GGRLIACE--HGVRLLDPDTGGKITLLAE---PEDG--------------------------------LPLNRPNDGVVD 119 (307)
T ss_pred CCeEEEEc--cccEEEeccCCceeEEecc---ccCC--------------------------------CCcCCCCceeEc
Confidence 99999998 8888888765655 55543 2222 367899999999
Q ss_pred CCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC--
Q psy4771 201 SDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG-- 278 (337)
Q Consensus 201 ~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g-- 278 (337)
++|++||+++.+ . + .........|+||++||.++..+.+.+.+..||||||||||+++|++|+..++|++|+.+.
T Consensus 120 pdG~~wfgt~~~-~-~-~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 120 PDGRIWFGDMGY-F-D-LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred CCCCEEEeCCCc-c-c-cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence 999999999983 0 0 0011245668999999965555444445999999999999999999999999999999972
Q ss_pred CCCCc--eeeeecCCCCCCCceeECCCCCEEEEecC
Q psy4771 279 PKQGK--SEVFIDGLPGLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 279 ~~~~~--~~~~~~~~~g~Pdgi~~d~dG~l~va~~~ 312 (337)
..... ..++.+..+|.|||+++|.+|++|++...
T Consensus 197 g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~ 232 (307)
T COG3386 197 GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW 232 (307)
T ss_pred CccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc
Confidence 22222 24555567899999999999999965444
No 3
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.94 E-value=1.8e-25 Score=199.23 Aligned_cols=194 Identities=34% Similarity=0.517 Sum_probs=147.8
Q ss_pred ccEEEee--CCeEE-EEecCcEEEEEeCCc-eeEEEecCccccCccccCccCCcceEEEC-CCCcEEEEECCCcEEEEEc
Q psy4771 65 PEAVVKH--KGDLY-MGVDGGHILKLSGGK-LVPVVKLGKDCYGFKYEQQCGRPLGIKFD-KNGALHVADAYFGLYKVNV 139 (337)
Q Consensus 65 P~~i~~~--~g~ly-~d~~~g~I~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d-~~G~lyVad~~~gv~~vd~ 139 (337)
||+++++ ++.|| +|..+++|+++++.+ ...+... ..|.|++++ ++|++|||+. .++..+|+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-------------~~~~G~~~~~~~g~l~v~~~-~~~~~~d~ 67 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-------------PGPNGMAFDRPDGRLYVADS-GGIAVVDP 67 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-------------SSEEEEEEECTTSEEEEEET-TCEEEEET
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-------------CCCceEEEEccCCEEEEEEc-CceEEEec
Confidence 4566662 67777 999999999999843 2222211 229999999 7899999984 66777799
Q ss_pred CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCcee
Q psy4771 140 TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLF 219 (337)
Q Consensus 140 ~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~ 219 (337)
++++++.+... ..+. .++..|||+++|++|++|||++......
T Consensus 68 ~~g~~~~~~~~---~~~~-------------------------------~~~~~~ND~~vd~~G~ly~t~~~~~~~~--- 110 (246)
T PF08450_consen 68 DTGKVTVLADL---PDGG-------------------------------VPFNRPNDVAVDPDGNLYVTDSGGGGAS--- 110 (246)
T ss_dssp TTTEEEEEEEE---ETTC-------------------------------SCTEEEEEEEE-TTS-EEEEEECCBCTT---
T ss_pred CCCcEEEEeec---cCCC-------------------------------cccCCCceEEEcCCCCEEEEecCCCccc---
Confidence 99999888863 1121 1577899999999999999998753200
Q ss_pred eeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC--CCCceeeeecC--CCCCC
Q psy4771 220 EGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP--KQGKSEVFIDG--LPGLP 295 (337)
Q Consensus 220 ~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~--~~~~~~~~~~~--~~g~P 295 (337)
....|+|++++++ +++..+..++..||||++++|+++|||+++..++|++|+++.. .....+++++. ..+.|
T Consensus 111 ---~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~p 186 (246)
T PF08450_consen 111 ---GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYP 186 (246)
T ss_dssp ---CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEE
T ss_pred ---cccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCC
Confidence 1111899999998 8888889999999999999999999999999999999999743 34566777552 23469
Q ss_pred CceeECCCCCEEEEecCC
Q psy4771 296 DNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 296 dgi~~d~dG~l~va~~~~ 313 (337)
||+++|++|+||||.+..
T Consensus 187 DG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 187 DGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp EEEEEBTTS-EEEEEETT
T ss_pred CcceEcCCCCEEEEEcCC
Confidence 999999999999998865
No 4
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.79 E-value=2.1e-19 Score=132.18 Aligned_cols=85 Identities=52% Similarity=0.893 Sum_probs=68.2
Q ss_pred ccEEEcCC-CcEEEEcCCCCc--cCceeeee-ecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 195 NSVTVDSD-GMVYWSDSSTKY--KSGLFEGL-TSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 195 n~v~vd~~-G~lyvtd~~~~~--~~~~~~~~-~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
||++|+++ |.|||||++.+| .+++..++ ..++|+|++|||.+++++++.+++.+||||++++|+++|+|+|+..+|
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 68999998 899999999887 44555544 678999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCC
Q psy4771 271 VHRYYLKGP 279 (337)
Q Consensus 271 I~~~~~~g~ 279 (337)
|.||+++|+
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 999999873
No 5
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.77 E-value=8.3e-17 Score=168.74 Aligned_cols=217 Identities=19% Similarity=0.246 Sum_probs=145.5
Q ss_pred CcccCccEEEe--eCCeEE-EEecCcEEEEEeC-CceeEEE-ecCccc--cCccccCccCCcceEEECCCC-cEEEEECC
Q psy4771 60 NEIHGPEAVVK--HKGDLY-MGVDGGHILKLSG-GKLVPVV-KLGKDC--YGFKYEQQCGRPLGIKFDKNG-ALHVADAY 131 (337)
Q Consensus 60 g~~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~-~~~~~~~-~~g~~~--~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~ 131 (337)
.++..|.++++ .++.+| +|..++||++++. ++..... ..|..+ ++......+.+|.||++|++| .|||+|..
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 35678999999 368898 9999999999987 4332211 112211 223334567889999999987 58999987
Q ss_pred C-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEc
Q psy4771 132 F-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSD 209 (337)
Q Consensus 132 ~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd 209 (337)
+ .|+++|..++.+++++... ..|.. .+| +. ......++.|.++++++ +|.+||+|
T Consensus 645 n~~Ir~id~~~~~V~tlag~G--~~g~~----------~~g-----g~------~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 645 NHALREIDFVNETVRTLAGNG--TKGSD----------YQG-----GK------KGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CceEEEEecCCCEEEEEeccC--cccCC----------CCC-----Ch------hhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 4 4899999989888887521 01100 000 00 00011367899999999 67899999
Q ss_pred CCCCccCceeeeeecCCccEEEEcCCCCeeEEEe---------------ccccceeeEEEccCCCEEEEEeCCCCEEEEE
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI---------------ANLHFANGVELSADESFVIVAETMSSRVHRY 274 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~---------------~~~~~p~gia~~~dg~~lyva~~~~~~I~~~ 274 (337)
...+ +|+++|+.++.+.... ..+..|+||++++||+.|||+++.+++|.+|
T Consensus 702 ~~~~--------------~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 702 AGQH--------------QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred CCCC--------------eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence 8643 5666665555443221 1356899999999999999999999999999
Q ss_pred EeeCCCCCc-----------eeeeec--C-----CCCCCCceeECCCCCEEEEecCC
Q psy4771 275 YLKGPKQGK-----------SEVFID--G-----LPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 275 ~~~g~~~~~-----------~~~~~~--~-----~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
++++..... ...|.+ + .-..|.|+++|++|++||+....
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N 824 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN 824 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence 986432100 000000 0 01248999999999999999766
No 6
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.71 E-value=3e-15 Score=157.17 Aligned_cols=210 Identities=18% Similarity=0.249 Sum_probs=140.6
Q ss_pred ccCccEEEee--CCeEE-EEecCcEEEEEeC--CceeEEEecCcccc----C-ccccCccCCcceEEECC-CCcEEEEEC
Q psy4771 62 IHGPEAVVKH--KGDLY-MGVDGGHILKLSG--GKLVPVVKLGKDCY----G-FKYEQQCGRPLGIKFDK-NGALHVADA 130 (337)
Q Consensus 62 ~~~P~~i~~~--~g~ly-~d~~~g~I~~~~~--~~~~~~~~~g~~~~----~-~~~~~~~~~P~Gl~~d~-~G~lyVad~ 130 (337)
+..|.+|+++ ++.|| +|..+++|.+++. +.+.++...|.... + ......+..|.++++++ +|+|||+|.
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 4579999993 56688 8989999999986 34444433222110 0 00112357899999999 579999997
Q ss_pred CC-cEEEEEcCCCeEEEEeccccc--cCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EE
Q psy4771 131 YF-GLYKVNVTTGQTEQLISMDTE--IDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VY 206 (337)
Q Consensus 131 ~~-gv~~vd~~~g~~~~l~~~~~~--~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-ly 206 (337)
.+ .|+++|..++.+..+...... ..|. ......+..|++|+++++|. ||
T Consensus 703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~---------------------------~~~~~~~~~P~GIavspdG~~LY 755 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRVFSGDGYERNLNGS---------------------------SGTSTSFAQPSGISLSPDLKELY 755 (1057)
T ss_pred CCCeEEEEECCCCeEEEEecCCccccCCCC---------------------------ccccccccCccEEEEeCCCCEEE
Confidence 64 599999988877766531100 0010 00011467899999999986 99
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe----------------------ccccceeeEEEccCCCEEEEE
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI----------------------ANLHFANGVELSADESFVIVA 264 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~----------------------~~~~~p~gia~~~dg~~lyva 264 (337)
|+|...+ +|.++|++++....+. ..+..|.|+++++||+ |||+
T Consensus 756 VADs~n~--------------~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVA 820 (1057)
T PLN02919 756 IADSESS--------------SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVA 820 (1057)
T ss_pred EEECCCC--------------eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEE
Confidence 9998643 7777777665433221 1145799999999995 9999
Q ss_pred eCCCCEEEEEEeeCCCCCcee-----eeecC-----CCCCCCceeECCCCCEEEEecCC
Q psy4771 265 ETMSSRVHRYYLKGPKQGKSE-----VFIDG-----LPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 265 ~~~~~~I~~~~~~g~~~~~~~-----~~~~~-----~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
++.+++|.+|+.++....... -+.++ .-..|.||++|++|++||+....
T Consensus 821 Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 999999999998653211100 00000 11259999999999999999766
No 7
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.70 E-value=4.4e-15 Score=128.40 Aligned_cols=224 Identities=14% Similarity=0.151 Sum_probs=160.0
Q ss_pred CceeccCcccCccEEEe-eCCeEE-EEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEE
Q psy4771 54 AEKLFENEIHGPEAVVK-HKGDLY-MGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVAD 129 (337)
Q Consensus 54 ~~~~~~g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad 129 (337)
...+..-.-.+|..++. .+|.+| ++...|.|-++|+ |+++.. .+ ....+|.||.+++||..||+|
T Consensus 53 ~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y-pL----------g~Ga~Phgiv~gpdg~~Witd 121 (353)
T COG4257 53 SAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY-PL----------GSGASPHGIVVGPDGSAWITD 121 (353)
T ss_pred cceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEE-ec----------CCCCCCceEEECCCCCeeEec
Confidence 44444444458999998 788777 9999999999998 555443 23 445789999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-------------cccceeeeccccCCCCCCCCcc
Q psy4771 130 AYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-------------QTEQLISMDTEIDGAKPQIPNS 196 (337)
Q Consensus 130 ~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-------------~~~~v~~~~~~~~~~~~~~pn~ 196 (337)
....|.++|+++.+++++.-+....++. =+..++|++|++- ..+.|.++.. .....|++
T Consensus 122 ~~~aI~R~dpkt~evt~f~lp~~~a~~n----let~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa----PqG~gpyG 193 (353)
T COG4257 122 TGLAIGRLDPKTLEVTRFPLPLEHADAN----LETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA----PQGGGPYG 193 (353)
T ss_pred CcceeEEecCcccceEEeecccccCCCc----ccceeeCCCccEEEeeccccceecCcccCceeeecc----CCCCCCcc
Confidence 8889999999999998886532222222 1446789999885 1123333322 23457999
Q ss_pred EEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc---ccceeeEEEccCCCEEEEEeCCCCEEEE
Q psy4771 197 VTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN---LHFANGVELSADESFVIVAETMSSRVHR 273 (337)
Q Consensus 197 v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~---~~~p~gia~~~dg~~lyva~~~~~~I~~ 273 (337)
|++.+||.+|++.-..+ .|.++||.++..+++... -.....|-.++.| ++|+++.+..++.+
T Consensus 194 i~atpdGsvwyaslagn--------------aiaridp~~~~aev~p~P~~~~~gsRriwsdpig-~~wittwg~g~l~r 258 (353)
T COG4257 194 ICATPDGSVWYASLAGN--------------AIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIG-RAWITTWGTGSLHR 258 (353)
T ss_pred eEECCCCcEEEEecccc--------------ceEEcccccCCcceecCCCcccccccccccCccC-cEEEeccCCceeeE
Confidence 99999999999876543 788999998866554322 1233456677778 69999999999999
Q ss_pred EEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 274 YYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 274 ~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
|+.+... -.+--..+....|+.|.+|..|++|.+.+..
T Consensus 259 fdPs~~s--W~eypLPgs~arpys~rVD~~grVW~sea~a 296 (353)
T COG4257 259 FDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVWLSEADA 296 (353)
T ss_pred eCccccc--ceeeeCCCCCCCcceeeeccCCcEEeecccc
Confidence 9986431 1111112233469999999999999988766
No 8
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.64 E-value=7.9e-15 Score=130.65 Aligned_cols=180 Identities=24% Similarity=0.423 Sum_probs=123.4
Q ss_pred CccEEEee--CCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-------
Q psy4771 64 GPEAVVKH--KGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF------- 132 (337)
Q Consensus 64 ~P~~i~~~--~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~------- 132 (337)
+|.++++. ++.+|+....+ +..++. ++.+.+...-.. .....+|+++++|++|+||+++...
T Consensus 41 ~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~ 113 (246)
T PF08450_consen 41 GPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDG------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGID 113 (246)
T ss_dssp SEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETT------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGG
T ss_pred CCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCC------CcccCCCceEEEcCCCCEEEEecCCCcccccc
Confidence 48888884 78899555555 344464 555554432100 1256789999999999999998642
Q ss_pred -c-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEc
Q psy4771 133 -G-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSD 209 (337)
Q Consensus 133 -g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd 209 (337)
+ +++++++ +++..+.. .+..||+|+++++|+ ||++|
T Consensus 114 ~g~v~~~~~~-~~~~~~~~----------------------------------------~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 114 PGSVYRIDPD-GKVTVVAD----------------------------------------GLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp SEEEEEEETT-SEEEEEEE----------------------------------------EESSEEEEEEETTSSEEEEEE
T ss_pred ccceEEECCC-CeEEEEec----------------------------------------CcccccceEECCcchheeecc
Confidence 3 8999998 77766654 356799999999996 99999
Q ss_pred CCCCccCceeeeeecCCccEEEEcCC--CCee---EEEe--cc-ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCC
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPK--TKKN---KVLI--AN-LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQ 281 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~--~~~~---~~~~--~~-~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~ 281 (337)
+... +|++|+.+ ++++ +++. .. ...|.|++++.+| .|||+....++|.+|+.+|...
T Consensus 153 s~~~--------------~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~G~~~ 217 (246)
T PF08450_consen 153 SFNG--------------RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPDGKLL 217 (246)
T ss_dssp TTTT--------------EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCEE
T ss_pred cccc--------------eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCCccEE
Confidence 8743 78888764 3312 2222 12 2369999999999 5999999999999999875422
Q ss_pred CceeeeecCCC-CCCCceeEC-CC-CCEEEEec
Q psy4771 282 GKSEVFIDGLP-GLPDNVKRD-SK-GNFLVSLV 311 (337)
Q Consensus 282 ~~~~~~~~~~~-g~Pdgi~~d-~d-G~l~va~~ 311 (337)
.. +. +| ..|.++++. ++ ++|||+..
T Consensus 218 ~~----i~-~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 218 RE----IE-LPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EE----EE--SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EE----Ec-CCCCCEEEEEEECCCCCEEEEEeC
Confidence 22 22 23 368999994 45 45999874
No 9
>KOG4499|consensus
Probab=99.56 E-value=8.6e-14 Score=117.86 Aligned_cols=129 Identities=18% Similarity=0.206 Sum_probs=96.0
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
-+..||-.+||+|+.|...++... ..+..-.|.|++.- .+++++.+...+..+||++++.|.+..|+.|+.+..
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~-----~~le~~~g~Ly~~~-~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFG-----DDLEPIGGELYSWL-AGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred hcccccCccCCCCceeeeeecccc-----ccccccccEEEEec-cCCCceeeehhccCCccccccccCcEEEEEccCceE
Confidence 356799999999999876665321 11223345555554 468888888889999999999999999999999999
Q ss_pred EEEEE--eeCCCCCceeeeecC------CCCCCCceeECCCCCEEEEecCC----CCCchhhccccC
Q psy4771 271 VHRYY--LKGPKQGKSEVFIDG------LPGLPDNVKRDSKGNFLVSLVCP----VEQPSEQAGNIR 325 (337)
Q Consensus 271 I~~~~--~~g~~~~~~~~~~~~------~~g~Pdgi~~d~dG~l~va~~~~----~~~p~~~~~~~~ 325 (337)
|..|+ ..++.+.++.++++- .+-.|||+++|.+|+||||.+.+ ..+|...++|.+
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e 248 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLE 248 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence 96666 455556666666541 23369999999999999999988 556766665543
No 10
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.55 E-value=2.8e-12 Score=120.03 Aligned_cols=230 Identities=16% Similarity=0.212 Sum_probs=142.6
Q ss_pred ccCccEEEe--eCCeEE-EEe---cCcEEEEEe--C--CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEEC
Q psy4771 62 IHGPEAVVK--HKGDLY-MGV---DGGHILKLS--G--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADA 130 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly-~d~---~~g~I~~~~--~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~ 130 (337)
.-.|.++++ +++.|| +.. ..+.|..+. . ++++.+.... .....|..++++++| .|||+..
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~---------~~g~~p~~i~~~~~g~~l~vany 106 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP---------SGGSSPCHIAVDPDGRFLYVANY 106 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE---------ESSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec---------cCCCCcEEEEEecCCCEEEEEEc
Confidence 457999999 678899 444 356776664 3 3444443221 134668999999998 7888875
Q ss_pred CCc-EEEEEcCC-CeEEEEeccc------cccCCCCCCCCCceeeCCCCCcc-----cccceeeecccc-----------
Q psy4771 131 YFG-LYKVNVTT-GQTEQLISMD------TEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDTEI----------- 186 (337)
Q Consensus 131 ~~g-v~~vd~~~-g~~~~l~~~~------~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~----------- 186 (337)
..+ +..++.+. |.+....... .....+....|+.+.++++|+++ ..++|..+.-.-
T Consensus 107 ~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~ 186 (345)
T PF10282_consen 107 GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI 186 (345)
T ss_dssp TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE
T ss_pred cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc
Confidence 544 54444432 5544332110 00111122468899999999987 446666665322
Q ss_pred CCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe------c---cccceeeEEEcc
Q psy4771 187 DGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI------A---NLHFANGVELSA 256 (337)
Q Consensus 187 ~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~------~---~~~~p~gia~~~ 256 (337)
.-.....|..++++++|+ +|+++...+ .=.++.++..++..+.+. . +...|.+|+++|
T Consensus 187 ~~~~G~GPRh~~f~pdg~~~Yv~~e~s~------------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp 254 (345)
T PF10282_consen 187 KVPPGSGPRHLAFSPDGKYAYVVNELSN------------TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP 254 (345)
T ss_dssp ECSTTSSEEEEEE-TTSSEEEEEETTTT------------EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T
T ss_pred ccccCCCCcEEEEcCCcCEEEEecCCCC------------cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec
Confidence 223457899999999986 998876533 013444554455443322 1 123789999999
Q ss_pred CCCEEEEEeCCCCEEEEEEeeCC--CCCceeeeecCCCCCCCceeECCCCC-EEEEecCC
Q psy4771 257 DESFVIVAETMSSRVHRYYLKGP--KQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 257 dg~~lyva~~~~~~I~~~~~~g~--~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
||++|||++.+.+.|..|+++.. .+.....+.. ....|.+|+++++|+ +||+....
T Consensus 255 dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 255 DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTT
T ss_pred CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCC
Confidence 99999999999999999999642 2222222221 123599999999998 88887655
No 11
>KOG4659|consensus
Probab=99.48 E-value=3.6e-12 Score=128.67 Aligned_cols=218 Identities=18% Similarity=0.261 Sum_probs=142.0
Q ss_pred EEEe--eCCeEE-EEecCcEEEEEeC-------CceeEEEecCccccCcc---------ccCccCCcceEEECCCCcEEE
Q psy4771 67 AVVK--HKGDLY-MGVDGGHILKLSG-------GKLVPVVKLGKDCYGFK---------YEQQCGRPLGIKFDKNGALHV 127 (337)
Q Consensus 67 ~i~~--~~g~ly-~d~~~g~I~~~~~-------~~~~~~~~~g~~~~~~~---------~~~~~~~P~Gl~~d~~G~lyV 127 (337)
.+|+ -+|.|| +|....+|+|+.. ++...++..|+.|.+.. ...++..|.||++|++|.||+
T Consensus 411 y~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYf 490 (1899)
T KOG4659|consen 411 YIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYF 490 (1899)
T ss_pred EEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEE
Confidence 4555 389999 8888999999964 23445666677665432 245677899999999999999
Q ss_pred EECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEE
Q psy4771 128 ADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVY 206 (337)
Q Consensus 128 ad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~ly 206 (337)
+| +..|++||. +|.+.++...... +.+..||.- +. ++....+.+|.++||+| |+.+|
T Consensus 491 aD-~t~IR~iD~-~giIstlig~~~~---~~~p~~C~~-------------~~----kl~~~~leWPT~LaV~Pmdnsl~ 548 (1899)
T KOG4659|consen 491 AD-GTRIRVIDT-TGIISTLIGTTPD---QHPPRTCAQ-------------IT----KLVDLQLEWPTSLAVDPMDNSLL 548 (1899)
T ss_pred ec-ccEEEEecc-CceEEEeccCCCC---ccCcccccc-------------cc----chhheeeecccceeecCCCCeEE
Confidence 99 467999997 4888888753111 111233321 11 12233688999999999 78899
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe---------------------ccccceeeEEEccCCCEEEEEe
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI---------------------ANLHFANGVELSADESFVIVAE 265 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~---------------------~~~~~p~gia~~~dg~~lyva~ 265 (337)
|-|.. -|+++++. +++++.. ..+..+..|+++++| -|||+|
T Consensus 549 Vld~n----------------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G-~lyvaE 610 (1899)
T KOG4659|consen 549 VLDTN----------------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDG-ALYVAE 610 (1899)
T ss_pred Eeecc----------------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCc-eEEEEe
Confidence 99976 33444332 2222211 124568899999999 699999
Q ss_pred CCCCEEEEEEeeCCCCCceeeeecC-------------------------CCCCCCceeECCCCCEEEEecCCCCCchhh
Q psy4771 266 TMSSRVHRYYLKGPKQGKSEVFIDG-------------------------LPGLPDNVKRDSKGNFLVSLVCPVEQPSEQ 320 (337)
Q Consensus 266 ~~~~~I~~~~~~g~~~~~~~~~~~~-------------------------~~g~Pdgi~~d~dG~l~va~~~~~~~p~~~ 320 (337)
+...+|-|++.-+. .+...+++.. .-.-|..+|+.+||++++|..++ -+++
T Consensus 611 sD~rriNrvr~~~t-dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN---~rIr 686 (1899)
T KOG4659|consen 611 SDGRRINRVRKLST-DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN---SRIR 686 (1899)
T ss_pred ccchhhhheEEecc-CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc---hhhh
Confidence 99877776665321 1122222210 00138899999999999999665 4455
Q ss_pred ccccCCCc
Q psy4771 321 AGNIRDPA 328 (337)
Q Consensus 321 ~~~~~~p~ 328 (337)
++..+.|.
T Consensus 687 ~Vs~~~~~ 694 (1899)
T KOG4659|consen 687 KVSARMAK 694 (1899)
T ss_pred hhhhcccc
Confidence 55554443
No 12
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.48 E-value=2.5e-11 Score=112.74 Aligned_cols=220 Identities=16% Similarity=0.162 Sum_probs=132.1
Q ss_pred CccEEEe--eCCeEE-EEecCcEEEEEeC---CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-EE
Q psy4771 64 GPEAVVK--HKGDLY-MGVDGGHILKLSG---GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-LY 135 (337)
Q Consensus 64 ~P~~i~~--~~g~ly-~d~~~g~I~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v~ 135 (337)
+|..+++ ++..|| ++..++.|..|+- ++...+... ...+.|.+++++++| .||++....+ |.
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~----------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~ 105 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES----------PLPGSPTHISTDHQGRFLFSASYNANCVS 105 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee----------cCCCCceEEEECCCCCEEEEEEcCCCeEE
Confidence 5788888 345788 4556777765542 333322211 223568999999999 6788865433 66
Q ss_pred EEEcC-CCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccceeeeccccCC------------CCCCCCccE
Q psy4771 136 KVNVT-TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDTEIDG------------AKPQIPNSV 197 (337)
Q Consensus 136 ~vd~~-~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~~~------------~~~~~pn~v 197 (337)
.++.+ .+....... ...+. ..|+.++++++|+.+ ..+.|..++..-.+ .....|+++
T Consensus 106 v~~~~~~g~~~~~~~---~~~~~--~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~ 180 (330)
T PRK11028 106 VSPLDKDGIPVAPIQ---IIEGL--EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHM 180 (330)
T ss_pred EEEECCCCCCCCcee---eccCC--CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceE
Confidence 66654 232211111 11121 248899999999887 33555555432111 124568999
Q ss_pred EEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec---------cccceeeEEEccCCCEEEEEeCC
Q psy4771 198 TVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA---------NLHFANGVELSADESFVIVAETM 267 (337)
Q Consensus 198 ~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~---------~~~~p~gia~~~dg~~lyva~~~ 267 (337)
+++++|+ +|+++...+ .=.+|.++..+++.+.... +..++.+|+++|||+++|+++..
T Consensus 181 ~~~pdg~~lyv~~~~~~------------~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~ 248 (330)
T PRK11028 181 VFHPNQQYAYCVNELNS------------SVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT 248 (330)
T ss_pred EECCCCCEEEEEecCCC------------EEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence 9999987 888876432 0033444433343322211 12345679999999999999998
Q ss_pred CCEEEEEEeeCCC-CCceeeeecCCCCCCCceeECCCCC-EEEEec
Q psy4771 268 SSRVHRYYLKGPK-QGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLV 311 (337)
Q Consensus 268 ~~~I~~~~~~g~~-~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~ 311 (337)
.+.|.+|+++... ......... ....|.++++++||+ +||+..
T Consensus 249 ~~~I~v~~i~~~~~~~~~~~~~~-~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 249 ASLISVFSVSEDGSVLSFEGHQP-TETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred CCeEEEEEEeCCCCeEEEeEEEe-ccccCCceEECCCCCEEEEEEc
Confidence 9999999986321 111111111 113589999999996 888875
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.43 E-value=4.9e-11 Score=111.62 Aligned_cols=184 Identities=21% Similarity=0.273 Sum_probs=121.0
Q ss_pred cCCcceEEECCCC-cEEEEECC---Cc---EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccc
Q psy4771 111 CGRPLGIKFDKNG-ALHVADAY---FG---LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQ 178 (337)
Q Consensus 111 ~~~P~Gl~~d~~G-~lyVad~~---~g---v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~ 178 (337)
...|.-|++++++ .||+++.. .+ .++++.++++++.+... ...|. .|++++++++|+.+ ..+.
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~--~~~g~---~p~~i~~~~~g~~l~vany~~g~ 110 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV--PSGGS---SPCHIAVDPDGRFLYVANYGGGS 110 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE--EESSS---CEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee--ccCCC---CcEEEEEecCCCEEEEEEccCCe
Confidence 4679999999998 88999763 23 56677776888777653 22444 59999999999997 2233
Q ss_pred eeeecccc--------------------CCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEE--EcCC
Q psy4771 179 LISMDTEI--------------------DGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQ--YNPK 235 (337)
Q Consensus 179 v~~~~~~~--------------------~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~--~d~~ 235 (337)
+..+.... ..+...+|+.+.++|+|+ +|++|.+.+ +|+. ++..
T Consensus 111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D--------------~v~~~~~~~~ 176 (345)
T PF10282_consen 111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD--------------RVYVYDIDDD 176 (345)
T ss_dssp EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT--------------EEEEEEE-TT
T ss_pred EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC--------------EEEEEEEeCC
Confidence 33332110 012346789999999987 999998754 4444 4444
Q ss_pred CCeeEE----EeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC--CCCCceeeeec---CCCC--CCCceeECCCC
Q psy4771 236 TKKNKV----LIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG--PKQGKSEVFID---GLPG--LPDNVKRDSKG 304 (337)
Q Consensus 236 ~~~~~~----~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g--~~~~~~~~~~~---~~~g--~Pdgi~~d~dG 304 (337)
++++.. -......|+.+++++|++++||++...+.|.+|+++. ........... ...+ .|.+|++++||
T Consensus 177 ~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg 256 (345)
T PF10282_consen 177 TGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDG 256 (345)
T ss_dssp S-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTS
T ss_pred CceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCC
Confidence 433422 2344678999999999999999999999999999983 21111121111 1111 47889999999
Q ss_pred C-EEEEecCC
Q psy4771 305 N-FLVSLVCP 313 (337)
Q Consensus 305 ~-l~va~~~~ 313 (337)
+ +||+....
T Consensus 257 ~~lyvsnr~~ 266 (345)
T PF10282_consen 257 RFLYVSNRGS 266 (345)
T ss_dssp SEEEEEECTT
T ss_pred CEEEEEeccC
Confidence 7 89988665
No 14
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=6.5e-10 Score=99.88 Aligned_cols=228 Identities=16% Similarity=0.332 Sum_probs=141.3
Q ss_pred ccCccEEEe--eCCeEEEEecC---cEE--EEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC
Q psy4771 62 IHGPEAVVK--HKGDLYMGVDG---GHI--LKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF 132 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly~d~~~---g~I--~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~ 132 (337)
.-.|..+++ ++..||+.... |.| +++|+ |.++.+... .-....|.-+++|++|+..++.+++
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~---------~~~g~~p~yvsvd~~g~~vf~AnY~ 109 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ---------TLPGSPPCYVSVDEDGRFVFVANYH 109 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc---------ccCCCCCeEEEECCCCCEEEEEEcc
Confidence 457999999 34579954443 455 45565 444433211 0122345889999999554444454
Q ss_pred -c---EEEEEcCCCeEEEEeccccccCC-----CCCCCCCceeeCCCCCcc-----cccceeeeccc---------cCCC
Q psy4771 133 -G---LYKVNVTTGQTEQLISMDTEIDG-----AKPQIPNSVTVDSDGQTG-----QTEQLISMDTE---------IDGA 189 (337)
Q Consensus 133 -g---v~~vd~~~g~~~~l~~~~~~~~g-----~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~---------~~~~ 189 (337)
| ++.+..+ |.+...........+ +....++...++++|+++ ..|+|..+.-. ..-+
T Consensus 110 ~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~ 188 (346)
T COG2706 110 SGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK 188 (346)
T ss_pred CceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC
Confidence 4 3334333 544333221111111 111346678899999998 55666666522 2223
Q ss_pred CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec---------cccceeeEEEccCCC
Q psy4771 190 KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA---------NLHFANGVELSADES 259 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~---------~~~~p~gia~~~dg~ 259 (337)
+...|..|++.|+|+ .|+...-+. .=.++.||+..++.+.+.. +-.....|.+++||+
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~EL~s------------tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr 256 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVNELNS------------TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR 256 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEeccCC------------EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC
Confidence 567899999999998 776553321 1256778877677766542 234556799999999
Q ss_pred EEEEEeCCCCEEEEEEeeCCCCCceeeeec--CCCC-CCCceeECCCCCEEEEecCC
Q psy4771 260 FVIVAETMSSRVHRYYLKGPKQGKSEVFID--GLPG-LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 260 ~lyva~~~~~~I~~~~~~g~~~~~~~~~~~--~~~g-~Pdgi~~d~dG~l~va~~~~ 313 (337)
+||+++.+.+.|..|.++.. .+.. .+.. ...| .|.++.+++.|++.++....
T Consensus 257 FLYasNRg~dsI~~f~V~~~-~g~L-~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 257 FLYASNRGHDSIAVFSVDPD-GGKL-ELVGITPTEGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred EEEEecCCCCeEEEEEEcCC-CCEE-EEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence 99999999999999999742 1111 2221 1234 39999999999988887766
No 15
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.38 E-value=2.8e-10 Score=105.72 Aligned_cols=208 Identities=14% Similarity=0.175 Sum_probs=127.8
Q ss_pred eEE-EEecCcEEEEEeC---CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC-CcEEEEEcC-CCeEEE
Q psy4771 74 DLY-MGVDGGHILKLSG---GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY-FGLYKVNVT-TGQTEQ 146 (337)
Q Consensus 74 ~ly-~d~~~g~I~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~-~gv~~vd~~-~g~~~~ 146 (337)
.+| +...++.|..|+- ++...+..+ ...+.|..|+++++| .||++... .+|..++.+ ++++..
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~----------~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~ 72 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVV----------DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTF 72 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEE----------ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEE
Confidence 467 5566677777764 333333222 223568899999999 68888643 346544443 455544
Q ss_pred EeccccccCCCCCCCCCceeeCCCCCcc-----cccceeeeccccCC---------CCCCCCccEEEcCCCc-EEEEcCC
Q psy4771 147 LISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDTEIDG---------AKPQIPNSVTVDSDGM-VYWSDSS 211 (337)
Q Consensus 147 l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~~~---------~~~~~pn~v~vd~~G~-lyvtd~~ 211 (337)
.... ...+ .|+.++++++|+.+ ..+.+..++...++ .....|++++++++|+ +|+++..
T Consensus 73 ~~~~--~~~~----~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~ 146 (330)
T PRK11028 73 AAES--PLPG----SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK 146 (330)
T ss_pred eeee--cCCC----CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC
Confidence 3321 1222 38999999999987 33555555322111 1234688999999986 8888865
Q ss_pred CCccCceeeeeecCCccEEEEcCCC-CeeE------EEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCce
Q psy4771 212 TKYKSGLFEGLTSGSGRLIQYNPKT-KKNK------VLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKS 284 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~G~v~~~d~~~-~~~~------~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~ 284 (337)
.+ .|..||.++ +.+. .-......|++++++|||+++||++...++|.+|+++.. .+..
T Consensus 147 ~~--------------~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~ 211 (330)
T PRK11028 147 ED--------------RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEI 211 (330)
T ss_pred CC--------------EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCE
Confidence 33 555555443 3221 011224578999999999999999999999999999732 1111
Q ss_pred eeee--cCC------CCCCCceeECCCCC-EEEEecC
Q psy4771 285 EVFI--DGL------PGLPDNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 285 ~~~~--~~~------~g~Pdgi~~d~dG~-l~va~~~ 312 (337)
+... ... +.+|.+|+++++|+ +||+...
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~ 248 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT 248 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence 1111 111 12345689999997 8888643
No 16
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=5.5e-11 Score=108.47 Aligned_cols=181 Identities=22% Similarity=0.301 Sum_probs=118.0
Q ss_pred cEEEe-eCCeEEEEecCcEEEEEeCCce-eEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-----C------
Q psy4771 66 EAVVK-HKGDLYMGVDGGHILKLSGGKL-VPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-----F------ 132 (337)
Q Consensus 66 ~~i~~-~~g~ly~d~~~g~I~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-----~------ 132 (337)
..... .++.|++......++..+.+.. +.+.... ......+|+...++++|++|+.+.. .
T Consensus 70 ~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~-------~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~ 142 (307)
T COG3386 70 SGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPE-------DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPT 142 (307)
T ss_pred cceeecCCCeEEEEccccEEEeccCCceeEEecccc-------CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCc
Confidence 33344 4667775554554555544444 3332211 1245589999999999999999876 1
Q ss_pred c-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC-cEEEEcC
Q psy4771 133 G-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDS 210 (337)
Q Consensus 133 g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G-~lyvtd~ 210 (337)
| |+++|+.++ +..+... .+..||+|++++|| .+|++|+
T Consensus 143 G~lyr~~p~g~-~~~l~~~---------------------------------------~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 143 GSLYRVDPDGG-VVRLLDD---------------------------------------DLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ceEEEEcCCCC-EEEeecC---------------------------------------cEEecCceEECCCCCEEEEEeC
Confidence 2 889998544 4444320 25679999999999 5999998
Q ss_pred CCCccCceeeeeecCCccEEEEcCC--CCee----EEEecc--ccceeeEEEccCCCEEEE-EeCCCCEEEEEEeeCCCC
Q psy4771 211 STKYKSGLFEGLTSGSGRLIQYNPK--TKKN----KVLIAN--LHFANGVELSADESFVIV-AETMSSRVHRYYLKGPKQ 281 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~~G~v~~~d~~--~~~~----~~~~~~--~~~p~gia~~~dg~~lyv-a~~~~~~I~~~~~~g~~~ 281 (337)
..+ +|++|+.+ ++.+ ..+... -..|.|++++.|| .||+ +.....+|.+|+++|...
T Consensus 183 ~~~--------------~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~pdG~l~ 247 (307)
T COG3386 183 PAN--------------RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNPDGKLL 247 (307)
T ss_pred CCC--------------eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECCCCcEE
Confidence 744 67776543 1211 112222 2579999999999 4884 444456999999986544
Q ss_pred CceeeeecCCC-CCCCceeECCC--CCEEEEecCC
Q psy4771 282 GKSEVFIDGLP-GLPDNVKRDSK--GNFLVSLVCP 313 (337)
Q Consensus 282 ~~~~~~~~~~~-g~Pdgi~~d~d--G~l~va~~~~ 313 (337)
+..+ +| ..|.++++-.. .+|||+....
T Consensus 248 ~~i~-----lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 248 GEIK-----LPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EEEE-----CCCCCCccceEeCCCcCEEEEEecCC
Confidence 3332 44 56888888764 4599998766
No 17
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.37 E-value=5.8e-11 Score=112.02 Aligned_cols=176 Identities=22% Similarity=0.291 Sum_probs=114.5
Q ss_pred ceeccC-cccCccEEEe-eCCeEEEEe------------cCc-EEEEEeC----CceeEEEecCccccCccccCccCCcc
Q psy4771 55 EKLFEN-EIHGPEAVVK-HKGDLYMGV------------DGG-HILKLSG----GKLVPVVKLGKDCYGFKYEQQCGRPL 115 (337)
Q Consensus 55 ~~~~~g-~~~~P~~i~~-~~g~ly~d~------------~~g-~I~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~P~ 115 (337)
+.++.. .+..|..|++ .+|.||+.. ..+ +|++++. |+......+. .....|+
T Consensus 5 ~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa---------~~l~~p~ 75 (367)
T TIGR02604 5 TLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA---------EELSMVT 75 (367)
T ss_pred EEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee---------cCCCCcc
Confidence 344433 3568999999 789999543 223 8999864 2222222221 3356799
Q ss_pred eEEECCCCcEEEEECCCcEEEE-EcCC-----CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 116 GIKFDKNGALHVADAYFGLYKV-NVTT-----GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 116 Gl~~d~~G~lyVad~~~gv~~v-d~~~-----g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
||++.++| |||++. ..|+++ |.++ ++.+.+... .... ...
T Consensus 76 Gi~~~~~G-lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~---~~~~-----------------------------~~~ 121 (367)
T TIGR02604 76 GLAVAVGG-VYVATP-PDILFLRDKDGDDKADGEREVLLSG---FGGQ-----------------------------INN 121 (367)
T ss_pred ceeEecCC-EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEc---cCCC-----------------------------CCc
Confidence 99999999 999973 568777 4432 133334321 1100 000
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCc----cCcee-eeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEE
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKY----KSGLF-EGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVA 264 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~----~~~~~-~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva 264 (337)
....++++++++||+|||++..... ..... .......|.+++++|++++.+.+..++.+|+|++++++|+ +|++
T Consensus 122 ~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~t 200 (367)
T TIGR02604 122 HHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFC 200 (367)
T ss_pred ccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEE
Confidence 2456899999999999999885321 00000 0112345899999999999999999999999999999985 8999
Q ss_pred eCCCCEEEEE
Q psy4771 265 ETMSSRVHRY 274 (337)
Q Consensus 265 ~~~~~~I~~~ 274 (337)
|.......++
T Consensus 201 dn~~~~~~~i 210 (367)
T TIGR02604 201 DNDDPPLCRV 210 (367)
T ss_pred ccCCCceeEE
Confidence 9765544443
No 18
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.34 E-value=5.4e-10 Score=97.19 Aligned_cols=224 Identities=15% Similarity=0.177 Sum_probs=154.2
Q ss_pred cCceeccCcccCccEEEe-eCCeEE-EEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCCcEEEE
Q psy4771 53 NAEKLFENEIHGPEAVVK-HKGDLY-MGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVA 128 (337)
Q Consensus 53 ~~~~~~~g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVa 128 (337)
++++...|.-..|++|.+ .+|..| +|... .|.|+++. +++++....+ .....-+-..||++|+||++
T Consensus 94 ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~--------~a~~nlet~vfD~~G~lWFt 164 (353)
T COG4257 94 EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLE--------HADANLETAVFDPWGNLWFT 164 (353)
T ss_pred ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccc--------cCCCcccceeeCCCccEEEe
Confidence 466666676778999999 788888 77776 69999984 3444422221 23344567899999999999
Q ss_pred ECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccccCC--CCCCCCcc-----
Q psy4771 129 DAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEIDG--AKPQIPNS----- 196 (337)
Q Consensus 129 d~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~~--~~~~~pn~----- 196 (337)
.. .| --++|+..+.++.+..+ .|. -|.+|.+.+||... ..+-|..++ .+.+ ..+..|++
T Consensus 165 ~q-~G~yGrLdPa~~~i~vfpaP----qG~---gpyGi~atpdGsvwyaslagnaiarid-p~~~~aev~p~P~~~~~gs 235 (353)
T COG4257 165 GQ-IGAYGRLDPARNVISVFPAP----QGG---GPYGICATPDGSVWYASLAGNAIARID-PFAGHAEVVPQPNALKAGS 235 (353)
T ss_pred ec-cccceecCcccCceeeeccC----CCC---CCcceEECCCCcEEEEeccccceEEcc-cccCCcceecCCCcccccc
Confidence 64 34 44899988888777642 343 49999999999987 223444333 2222 12334454
Q ss_pred --EEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEE--EeccccceeeEEEccCCCEEEEEeCCCCEEE
Q psy4771 197 --VTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKV--LIANLHFANGVELSADESFVIVAETMSSRVH 272 (337)
Q Consensus 197 --v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~--~~~~~~~p~gia~~~dg~~lyva~~~~~~I~ 272 (337)
+-.|+.|++|+|++. .|++++|||.+.+... +...-..|..+.++..+ ++|.+|...+.|.
T Consensus 236 Rriwsdpig~~wittwg--------------~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~g-rVW~sea~agai~ 300 (353)
T COG4257 236 RRIWSDPIGRAWITTWG--------------TGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHG-RVWLSEADAGAIG 300 (353)
T ss_pred cccccCccCcEEEeccC--------------CceeeEeCcccccceeeeCCCCCCCcceeeeccCC-cEEeeccccCcee
Confidence 667888999999876 4699999998776433 22334578899999777 6999999999999
Q ss_pred EEEeeCCCCCceeeeecCCCCCCCceeECCC-CCEEEEecCC
Q psy4771 273 RYYLKGPKQGKSEVFIDGLPGLPDNVKRDSK-GNFLVSLVCP 313 (337)
Q Consensus 273 ~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~d-G~l~va~~~~ 313 (337)
||+.... +..++-..-+. +.++.++.. |.+|.+....
T Consensus 301 rfdpeta---~ftv~p~pr~n-~gn~ql~gr~ge~W~~e~gv 338 (353)
T COG4257 301 RFDPETA---RFTVLPIPRPN-SGNIQLDGRPGELWFTEAGV 338 (353)
T ss_pred ecCcccc---eEEEecCCCCC-CCceeccCCCCceeecccCc
Confidence 9997532 33444332222 567888876 4699887655
No 19
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.34 E-value=6e-11 Score=111.89 Aligned_cols=102 Identities=19% Similarity=0.302 Sum_probs=74.2
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEE-cCC-----CCeeEEEeccc--------cceeeEEEc
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQY-NPK-----TKKNKVLIANL--------HFANGVELS 255 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~-d~~-----~~~~~~~~~~~--------~~p~gia~~ 255 (337)
.+..|+++++.++| |||++.. .|+++ |.+ +++.+++..++ ..+++++++
T Consensus 70 ~l~~p~Gi~~~~~G-lyV~~~~----------------~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~g 132 (367)
T TIGR02604 70 ELSMVTGLAVAVGG-VYVATPP----------------DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWG 132 (367)
T ss_pred CCCCccceeEecCC-EEEeCCC----------------eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceEC
Confidence 36679999999999 9999764 45555 221 12334444433 458899999
Q ss_pred cCCCEEEEEeCCC-------------------CEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 256 ADESFVIVAETMS-------------------SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 256 ~dg~~lyva~~~~-------------------~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+|| .||++.... ++|+||++++. ..++++.++.. |.|+++|++|++|++....
T Consensus 133 pDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~a~G~rn-p~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 133 PDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG---KLRVVAHGFQN-PYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCC-CEEEecccCCCceeccCCCccCcccccCceEEEEecCCC---eEEEEecCcCC-CccceECCCCCEEEEccCC
Confidence 999 599987731 57999998764 35777776544 9999999999999998744
No 20
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=6.1e-10 Score=105.54 Aligned_cols=184 Identities=19% Similarity=0.200 Sum_probs=129.7
Q ss_pred cCccEEEe--eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC---CcEE
Q psy4771 63 HGPEAVVK--HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY---FGLY 135 (337)
Q Consensus 63 ~~P~~i~~--~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~---~gv~ 135 (337)
+.|.++++ .+..+| ++..++.|..++.......... .....|.+++++++| .+||++.. +.+.
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~----------~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vs 143 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI----------PVGLGPVGLAVDPDGKYVYVANAGNGNNTVS 143 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe----------eeccCCceEEECCCCCEEEEEecccCCceEE
Confidence 78999998 456699 6666788999984222111111 122379999999998 99999984 2389
Q ss_pred EEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCc
Q psy4771 136 KVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKY 214 (337)
Q Consensus 136 ~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~ 214 (337)
.+|..++++..... . ...|.+++++++|. +|+++...
T Consensus 144 vid~~t~~~~~~~~-----v-----------------------------------G~~P~~~a~~p~g~~vyv~~~~~-- 181 (381)
T COG3391 144 VIDAATNKVTATIP-----V-----------------------------------GNTPTGVAVDPDGNKVYVTNSDD-- 181 (381)
T ss_pred EEeCCCCeEEEEEe-----c-----------------------------------CCCcceEEECCCCCeEEEEecCC--
Confidence 99998877665532 1 12468999999997 99999553
Q ss_pred cCceeeeeecCCccEEEEcCCCCeeEE-----EeccccceeeEEEccCCCEEEEEeCCC--CEEEEEEeeCCCCCceeee
Q psy4771 215 KSGLFEGLTSGSGRLIQYNPKTKKNKV-----LIANLHFANGVELSADESFVIVAETMS--SRVHRYYLKGPKQGKSEVF 287 (337)
Q Consensus 215 ~~~~~~~~~~~~G~v~~~d~~~~~~~~-----~~~~~~~p~gia~~~dg~~lyva~~~~--~~I~~~~~~g~~~~~~~~~ 287 (337)
++|..+|.++..+.. ...-...|.++++++||+.+||++..+ +++.+++...........-
T Consensus 182 ------------~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 182 ------------NTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred ------------CeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 378888876555442 234467899999999999999999988 6899988754322222112
Q ss_pred ecCCCCCCCceeECCCCC-EEEEecC
Q psy4771 288 IDGLPGLPDNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 288 ~~~~~g~Pdgi~~d~dG~-l~va~~~ 312 (337)
.+ .. .|.+++++++|. +||+...
T Consensus 250 ~~-~~-~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 250 VG-SG-APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred cc-cC-CCCceeECCCCCEEEEEecC
Confidence 22 22 589999999997 6776444
No 21
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=3.1e-08 Score=89.24 Aligned_cols=185 Identities=18% Similarity=0.258 Sum_probs=124.8
Q ss_pred CccCCcceEEECCCC-cEEEEECC--C-c--EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----ccc
Q psy4771 109 QQCGRPLGIKFDKNG-ALHVADAY--F-G--LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTE 177 (337)
Q Consensus 109 ~~~~~P~Gl~~d~~G-~lyVad~~--~-g--v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~ 177 (337)
...+.|.=|++++++ +||++... . + .++||+++|+++.+... ...|. -|+.+++|.+|+++ ..+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~--~~~g~---~p~yvsvd~~g~~vf~AnY~~g 111 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ--TLPGS---PPCYVSVDEDGRFVFVANYHSG 111 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc--ccCCC---CCeEEEECCCCCEEEEEEccCc
Confidence 345679999999998 89998643 2 3 67888888988888653 44555 37999999999997 223
Q ss_pred ceeeeccccCCC-------------------CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCC
Q psy4771 178 QLISMDTEIDGA-------------------KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTK 237 (337)
Q Consensus 178 ~v~~~~~~~~~~-------------------~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~ 237 (337)
.|.++..+.++. .-.+++...++|+|+ |+++|-+.+ +|+.|+.+.|
T Consensus 112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D--------------ri~~y~~~dg 177 (346)
T COG2706 112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD--------------RIFLYDLDDG 177 (346)
T ss_pred eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc--------------eEEEEEcccC
Confidence 443333222221 122367788899996 888888765 6666666566
Q ss_pred eeEEE----eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC--CCCceeeeecCCC----C--CCCceeECCCCC
Q psy4771 238 KNKVL----IANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP--KQGKSEVFIDGLP----G--LPDNVKRDSKGN 305 (337)
Q Consensus 238 ~~~~~----~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~--~~~~~~~~~~~~~----g--~Pdgi~~d~dG~ 305 (337)
..+.. +.....|+=|+|.|+++..|+...-+++|.++..++. +....+... .+| | .-..|.+++||+
T Consensus 178 ~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~-tlP~dF~g~~~~aaIhis~dGr 256 (346)
T COG2706 178 KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID-TLPEDFTGTNWAAAIHISPDGR 256 (346)
T ss_pred ccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec-cCccccCCCCceeEEEECCCCC
Confidence 54322 2445678999999999999999999999999999763 222222221 122 1 134588999999
Q ss_pred EEEEecCC
Q psy4771 306 FLVSLVCP 313 (337)
Q Consensus 306 l~va~~~~ 313 (337)
+..++..+
T Consensus 257 FLYasNRg 264 (346)
T COG2706 257 FLYASNRG 264 (346)
T ss_pred EEEEecCC
Confidence 44444443
No 22
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.8e-08 Score=95.50 Aligned_cols=188 Identities=19% Similarity=0.217 Sum_probs=128.9
Q ss_pred CccEEEe--eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC-CcEEEEE
Q psy4771 64 GPEAVVK--HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY-FGLYKVN 138 (337)
Q Consensus 64 ~P~~i~~--~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~-~gv~~vd 138 (337)
.|.++++ .+..+| +......+..++.. ...+..+. ......|.|+++++.| ++||++.. +.|..+|
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~--------~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid 102 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSL--------SVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVID 102 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeec--------cCCCccccceeeCCCCCeEEEecCCCCeEEEEc
Confidence 6778887 344777 55555556665543 22121111 0112679999999998 69999865 4588888
Q ss_pred cCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC-cEEEEcCCCCccCc
Q psy4771 139 VTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSSTKYKSG 217 (337)
Q Consensus 139 ~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G-~lyvtd~~~~~~~~ 217 (337)
.++.++..... ....|.+++++++| .+|+++...
T Consensus 103 ~~~~~~~~~~~----------------------------------------vG~~P~~~~~~~~~~~vYV~n~~~----- 137 (381)
T COG3391 103 TATNTVLGSIP----------------------------------------VGLGPVGLAVDPDGKYVYVANAGN----- 137 (381)
T ss_pred CcccceeeEee----------------------------------------eccCCceEEECCCCCEEEEEeccc-----
Confidence 55444433332 12369999999988 599999852
Q ss_pred eeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCc-e-eeeecCCCCCC
Q psy4771 218 LFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGK-S-EVFIDGLPGLP 295 (337)
Q Consensus 218 ~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~-~-~~~~~~~~g~P 295 (337)
.++.+..+|..+++..........|.+++++|+|+.+||++...++|..++.++..... . ..... ....|
T Consensus 138 -------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P 209 (381)
T COG3391 138 -------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGP 209 (381)
T ss_pred -------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCC
Confidence 23589999988887654443344689999999999999999999999999976543221 0 00111 22359
Q ss_pred CceeECCCCC-EEEEecCC
Q psy4771 296 DNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 296 dgi~~d~dG~-l~va~~~~ 313 (337)
.+++++++|+ +||+....
T Consensus 210 ~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 210 AGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred ceEEECCCCCEEEEEeccC
Confidence 9999999998 99998764
No 23
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.10 E-value=7.4e-08 Score=87.11 Aligned_cols=202 Identities=14% Similarity=0.145 Sum_probs=124.8
Q ss_pred CccEEEe-e-CCeEEE-EecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-c-EEEEE
Q psy4771 64 GPEAVVK-H-KGDLYM-GVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-G-LYKVN 138 (337)
Q Consensus 64 ~P~~i~~-~-~g~ly~-d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-g-v~~vd 138 (337)
.|..+++ . ++.+|+ ...+++|..|+..+...+..+ .....|.+++++++|.++++.... . +..+|
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~----------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d 143 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI----------PVGVEPEGMAVSPDGKIVVNTSETTNMAHFID 143 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe----------eCCCCcceEEECCCCCEEEEEecCCCeEEEEe
Confidence 4666666 3 456774 455788888887443333222 112347899999999766654333 2 55678
Q ss_pred cCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccceeeeccccC-----------CC--CCCCCccEEEc
Q psy4771 139 VTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDTEID-----------GA--KPQIPNSVTVD 200 (337)
Q Consensus 139 ~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~~-----------~~--~~~~pn~v~vd 200 (337)
.++++...... .+. .|..++++++|+.+ ..+.+..++..-. +. ....|.+++++
T Consensus 144 ~~~~~~~~~~~-----~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 215 (300)
T TIGR03866 144 TKTYEIVDNVL-----VDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT 215 (300)
T ss_pred CCCCeEEEEEE-----cCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC
Confidence 77665543221 111 36778889999866 1334444442110 00 11235678899
Q ss_pred CCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 201 SDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 201 ~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
++|+ +|++... .+++..+|.++++..........+.+++++|+|+.||+++...+.|.++++++.
T Consensus 216 ~dg~~~~~~~~~--------------~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 216 KDGKTAFVALGP--------------ANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred CCCCEEEEEcCC--------------CCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 9987 5665543 236788888777654433334568899999999999998877889999998754
Q ss_pred CCCceeeeecCCCCCCCceeEC
Q psy4771 280 KQGKSEVFIDGLPGLPDNVKRD 301 (337)
Q Consensus 280 ~~~~~~~~~~~~~g~Pdgi~~d 301 (337)
+. ...+. ..+.|.+|++.
T Consensus 282 ~~--~~~~~--~~~~~~~~~~~ 299 (300)
T TIGR03866 282 KV--IKSIK--VGRLPWGVVVR 299 (300)
T ss_pred cE--EEEEE--cccccceeEeC
Confidence 32 12222 23458999875
No 24
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.09 E-value=1.2e-07 Score=85.64 Aligned_cols=207 Identities=19% Similarity=0.196 Sum_probs=125.0
Q ss_pred eEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCc-EEEEECCC-cEEEEEcCCCeEEEEecc
Q psy4771 74 DLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAYF-GLYKVNVTTGQTEQLISM 150 (337)
Q Consensus 74 ~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~~-gv~~vd~~~g~~~~l~~~ 150 (337)
.+| +...++.|..|+..+...+..+ .....|.+++++++|+ +|++.... .|+.+|.++++......
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~----------~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTF----------PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEE----------ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-
Confidence 345 7778889999986332222222 1124478999999985 67776544 48888988776544322
Q ss_pred ccccCCCCCCCCCceeeCCCCCcc----c-ccceeeeccccCC-----CCCCCCccEEEcCCCcEEEEcCCCCccCceee
Q psy4771 151 DTEIDGAKPQIPNSVTVDSDGQTG----Q-TEQLISMDTEIDG-----AKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFE 220 (337)
Q Consensus 151 ~~~~~g~~~~~P~~v~~~~~g~~~----~-~~~v~~~~~~~~~-----~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~ 220 (337)
.+. .|..++++++|+.+ . ++.+..++..... .....+++++++++|.++++.....
T Consensus 71 ----~~~---~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------- 136 (300)
T TIGR03866 71 ----SGP---DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT------- 136 (300)
T ss_pred ----CCC---CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC-------
Confidence 111 25678899999865 2 2345444422110 0123478999999998655443211
Q ss_pred eeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee-cC---CCCCCC
Q psy4771 221 GLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI-DG---LPGLPD 296 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~-~~---~~g~Pd 296 (337)
..++.+|..+++..........|..+++++|++.||++....++|..+++...+....-.+. .. ....|.
T Consensus 137 ------~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 137 ------NMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred ------CeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 13555676666543322223467889999999999888766789999998643221111111 00 112367
Q ss_pred ceeECCCCC-EEEEec
Q psy4771 297 NVKRDSKGN-FLVSLV 311 (337)
Q Consensus 297 gi~~d~dG~-l~va~~ 311 (337)
+++++++|+ +|++..
T Consensus 211 ~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 211 GIKLTKDGKTAFVALG 226 (300)
T ss_pred ceEECCCCCEEEEEcC
Confidence 899999998 477654
No 25
>KOG1214|consensus
Probab=99.09 E-value=2.7e-09 Score=104.30 Aligned_cols=182 Identities=15% Similarity=0.228 Sum_probs=126.1
Q ss_pred ccEEEe--eCCeEE-EEecCcEEEEEeCC--ceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-EEEE
Q psy4771 65 PEAVVK--HKGDLY-MGVDGGHILKLSGG--KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-LYKV 137 (337)
Q Consensus 65 P~~i~~--~~g~ly-~d~~~g~I~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v~~v 137 (337)
|.+|.+ .+..+| +|+....|-|-+.+ +.+++. ...+..|.||++|--+ ++|.+|+... |-..
T Consensus 1027 iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~-----------n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA 1095 (1289)
T KOG1214|consen 1027 IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIV-----------NSGLISPEGIAVDHIRRNMYWTDSVLDKIEVA 1095 (1289)
T ss_pred eeeeecccccceEEEeecCCCccccccccCCCCceee-----------cccCCCccceeeeeccceeeeeccccchhhee
Confidence 455555 356665 99999988887642 333332 2557889999999887 9999997643 3333
Q ss_pred EcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCCccC
Q psy4771 138 NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTKYKS 216 (337)
Q Consensus 138 d~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~~~~ 216 (337)
..++.+.+.|... .+-.|.+|++|+ .|+||+||+...
T Consensus 1096 ~LdG~~rkvLf~t---------------------------------------dLVNPR~iv~D~~rgnLYwtDWnRe--- 1133 (1289)
T KOG1214|consen 1096 LLDGSERKVLFYT---------------------------------------DLVNPRAIVVDPIRGNLYWTDWNRE--- 1133 (1289)
T ss_pred ecCCceeeEEEee---------------------------------------cccCcceEEeecccCceeecccccc---
Confidence 3345555555431 356689999998 678999999853
Q ss_pred ceeeeeecCCccEEEEcCCCCeeEE-EeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCC
Q psy4771 217 GLFEGLTSGSGRLIQYNPKTKKNKV-LIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLP 295 (337)
Q Consensus 217 ~~~~~~~~~~G~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~P 295 (337)
+-.|-+.+.++...++ +.+.+..|||+.|+|.-+.|-++|.+.+|+.....+|. +.+.+ ..+|. +|
T Consensus 1134 ---------nPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~--gRR~i-~~~Lq-YP 1200 (1289)
T KOG1214|consen 1134 ---------NPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT--GRRVI-QNNLQ-YP 1200 (1289)
T ss_pred ---------CCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCC--cchhh-hhccc-Cc
Confidence 1244444444333333 34678899999999999999999999999999988764 33333 34453 69
Q ss_pred CceeECCCCCEEEEecCC
Q psy4771 296 DNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 296 dgi~~d~dG~l~va~~~~ 313 (337)
.+|.-+.+- +|-+.|..
T Consensus 1201 F~itsy~~~-fY~TDWk~ 1217 (1289)
T KOG1214|consen 1201 FSITSYADH-FYHTDWKR 1217 (1289)
T ss_pred eeeeecccc-ceeecccc
Confidence 999988775 77666655
No 26
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.02 E-value=9.3e-08 Score=88.68 Aligned_cols=53 Identities=17% Similarity=0.091 Sum_probs=43.8
Q ss_pred ccEEEEcCCCCeeEEEeccccceeeEEEccCCC-EEEEEeCCCCEEEEEEeeCC
Q psy4771 227 GRLIQYNPKTKKNKVLIANLHFANGVELSADES-FVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 227 G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~-~lyva~~~~~~I~~~~~~g~ 279 (337)
+.|+.+|.++++...-..-...|.+|++++||+ .||+++..++.|.++|....
T Consensus 279 ~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 468888888877655555567899999999999 99999999999999997643
No 27
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.99 E-value=3.3e-08 Score=91.89 Aligned_cols=241 Identities=19% Similarity=0.247 Sum_probs=134.1
Q ss_pred cCccEEEe-eCCeEEEEecCcEEEEEeC-Cce-eEEEecCccccCccccCccCCcceEEECCC----CcEEEEECC----
Q psy4771 63 HGPEAVVK-HKGDLYMGVDGGHILKLSG-GKL-VPVVKLGKDCYGFKYEQQCGRPLGIKFDKN----GALHVADAY---- 131 (337)
Q Consensus 63 ~~P~~i~~-~~g~ly~d~~~g~I~~~~~-~~~-~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~----G~lyVad~~---- 131 (337)
..|.+|++ .+|.+|+....|+|++++. +.. ..+....+-. ........|++++++ +.|||+-+.
T Consensus 2 ~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~-----~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~ 76 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVF-----ADGERGLLGIAFHPDFASNGYLYVYYTNADED 76 (331)
T ss_dssp SSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTB-----TSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS
T ss_pred CCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceeccccccc-----ccccCCcccceeccccCCCCEEEEEEEcccCC
Confidence 46899999 6889998888999999984 444 3333322110 122345789999995 799998652
Q ss_pred -----CcEEEEEcCCC--e---EEEEeccccccCCCCCCCCCceeeCCCCCcc-----------------cccceeeecc
Q psy4771 132 -----FGLYKVNVTTG--Q---TEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----------------QTEQLISMDT 184 (337)
Q Consensus 132 -----~gv~~vd~~~g--~---~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----------------~~~~v~~~~~ 184 (337)
..|.++..+.+ . .+.+......... ....-..|++++||+++ ..+.|..++.
T Consensus 77 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~-~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~ 155 (331)
T PF07995_consen 77 GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSS-GNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP 155 (331)
T ss_dssp SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CS-SSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET
T ss_pred CCCcceeeEEEeccCCccccccceEEEEEeCCCCC-CCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecc
Confidence 13666654433 1 2223221111001 01123459999999887 1135555542
Q ss_pred ccC------------------CCCCCCCccEEEcCC-CcEEEEcCCCCccCceeeee-------------ecCCccEEEE
Q psy4771 185 EID------------------GAKPQIPNSVTVDSD-GMVYWSDSSTKYKSGLFEGL-------------TSGSGRLIQY 232 (337)
Q Consensus 185 ~~~------------------~~~~~~pn~v~vd~~-G~lyvtd~~~~~~~~~~~~~-------------~~~~G~v~~~ 232 (337)
... ...+..|.++++|+. |+||++|.+....+-+..+. ....|. .+
T Consensus 156 dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~--~~ 233 (331)
T PF07995_consen 156 DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGP--PI 233 (331)
T ss_dssp TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS---E
T ss_pred cCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCC--cc
Confidence 211 013567889999998 99999998754211111110 000010 00
Q ss_pred c--CCC-C--eeEEEeccccceeeEEEccCC------CEEEEEeCCCCEEEEEEeeC-CCCCceeeeecCCCCCCCceeE
Q psy4771 233 N--PKT-K--KNKVLIANLHFANGVELSADE------SFVIVAETMSSRVHRYYLKG-PKQGKSEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 233 d--~~~-~--~~~~~~~~~~~p~gia~~~dg------~~lyva~~~~~~I~~~~~~g-~~~~~~~~~~~~~~g~Pdgi~~ 300 (337)
. ... . ........-..|.|+++-... ..+++++...++|+++.++. ......+.+.....+.|.+|++
T Consensus 234 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 313 (331)
T PF07995_consen 234 GDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ 313 (331)
T ss_dssp CTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred ccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence 0 000 0 001112223468888887432 25999999999999999973 3344556666555557899999
Q ss_pred CCCCCEEEEec
Q psy4771 301 DSKGNFLVSLV 311 (337)
Q Consensus 301 d~dG~l~va~~ 311 (337)
++||.|||+..
T Consensus 314 ~pDG~Lyv~~d 324 (331)
T PF07995_consen 314 GPDGALYVSDD 324 (331)
T ss_dssp ETTSEEEEEE-
T ss_pred cCCCeEEEEEC
Confidence 99999999986
No 28
>KOG4659|consensus
Probab=98.92 E-value=1.2e-07 Score=96.85 Aligned_cols=211 Identities=17% Similarity=0.285 Sum_probs=126.9
Q ss_pred ccCccEEEe-eCCeEEEEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCC-cEEEE
Q psy4771 62 IHGPEAVVK-HKGDLYMGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYF-GLYKV 137 (337)
Q Consensus 62 ~~~P~~i~~-~~g~ly~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~-gv~~v 137 (337)
++.|..++. .||.||++.-|- |-|+.+ |.+.++.+++.. ...+-.-||++| +|.|||+|..+ .|+++
T Consensus 364 L~aPvala~a~DGSl~VGDfNy-IRRI~~dg~v~tIl~L~~t--------~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv 434 (1899)
T KOG4659|consen 364 LFAPVALAYAPDGSLIVGDFNY-IRRISQDGQVSTILTLGLT--------DTSHSYYIAVSPVDGTLYVSDPLSKQVWRV 434 (1899)
T ss_pred eeceeeEEEcCCCcEEEccchh-eeeecCCCceEEEEEecCC--------CccceeEEEecCcCceEEecCCCcceEEEe
Confidence 678999998 899999876554 888877 777778777531 123345799998 47999999764 58888
Q ss_pred EcCCC-----eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCC
Q psy4771 138 NVTTG-----QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST 212 (337)
Q Consensus 138 d~~~g-----~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~ 212 (337)
..-.+ ....++.....+ +|-.=+ ..++.. ...+.+.+|.||++|.+|.+||+|...
T Consensus 435 ~sl~~~d~~~N~evvaG~Ge~C------lp~des-------CGDGal------A~dA~L~~PkGIa~dk~g~lYfaD~t~ 495 (1899)
T KOG4659|consen 435 SSLEPQDSRNNYEVVAGDGEVC------LPADES-------CGDGAL------AQDAQLIFPKGIAFDKMGNLYFADGTR 495 (1899)
T ss_pred ccCCccccccCeeEEeccCcCc------cccccc-------cCcchh------cccceeccCCceeEccCCcEEEecccE
Confidence 43211 122232211000 000000 011111 122368899999999999999999872
Q ss_pred CccCceeeeeecCCccEEEEc---CCCC-------eeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCC
Q psy4771 213 KYKSGLFEGLTSGSGRLIQYN---PKTK-------KNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQG 282 (337)
Q Consensus 213 ~~~~~~~~~~~~~~G~v~~~d---~~~~-------~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~ 282 (337)
- .+.+.+|-|-.+- +.+. .+....-.+.+|..+|++|=.+.|||-| .|-|++++....
T Consensus 496 I-------R~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~r--- 563 (1899)
T KOG4659|consen 496 I-------RVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHR--- 563 (1899)
T ss_pred E-------EEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCcc---
Confidence 1 1122222221111 1100 0111111367999999999666899999 568888876532
Q ss_pred ceeeeec-----CCCC---------------CCCceeECCCCCEEEEecCC
Q psy4771 283 KSEVFID-----GLPG---------------LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 283 ~~~~~~~-----~~~g---------------~Pdgi~~d~dG~l~va~~~~ 313 (337)
..+... .+++ .+..|++..+|-+||+....
T Consensus 564 -V~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~ 613 (1899)
T KOG4659|consen 564 -VRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDG 613 (1899)
T ss_pred -EEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccc
Confidence 111110 0111 37899999999999999877
No 29
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.84 E-value=1.1e-07 Score=86.52 Aligned_cols=152 Identities=24% Similarity=0.277 Sum_probs=98.2
Q ss_pred cceEEECCCCcEEEEECCC-------------cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCccccccee
Q psy4771 114 PLGIKFDKNGALHVADAYF-------------GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLI 180 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~-------------gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~ 180 (337)
..++.+|+.|+|||.|++. .|+.+|.+++++...... |..++.
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~-----------p~~~~~------------- 58 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPF-----------PPDIAP------------- 58 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE-------------CCCS--------------
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEEC-----------ChHHcc-------------
Confidence 4689999999999999752 389999998876555431 222211
Q ss_pred eeccccCCCCCCCCccEEEcC-C-----CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccc--------
Q psy4771 181 SMDTEIDGAKPQIPNSVTVDS-D-----GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANL-------- 246 (337)
Q Consensus 181 ~~~~~~~~~~~~~pn~v~vd~-~-----G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~-------- 246 (337)
+-...|+++||. + +.+|+||.+.. .|.+||..+++..++..+.
T Consensus 59 ---------~~s~lndl~VD~~~~~~~~~~aYItD~~~~--------------glIV~dl~~~~s~Rv~~~~~~~~p~~~ 115 (287)
T PF03022_consen 59 ---------PDSFLNDLVVDVRDGNCDDGFAYITDSGGP--------------GLIVYDLATGKSWRVLHNSFSPDPDAG 115 (287)
T ss_dssp ---------TCGGEEEEEEECTTTTS-SEEEEEEETTTC--------------EEEEEETTTTEEEEEETCGCTTS-SSE
T ss_pred ---------cccccceEEEEccCCCCcceEEEEeCCCcC--------------cEEEEEccCCcEEEEecCCcceecccc
Confidence 345689999997 2 46999998743 5666666666554443221
Q ss_pred ------------cceeeEEEcc---CCCEEEEEeCCCCEEEEEEee---CCCCCc-------eeeeecCCCCCCCceeEC
Q psy4771 247 ------------HFANGVELSA---DESFVIVAETMSSRVHRYYLK---GPKQGK-------SEVFIDGLPGLPDNVKRD 301 (337)
Q Consensus 247 ------------~~p~gia~~~---dg~~lyva~~~~~~I~~~~~~---g~~~~~-------~~~~~~~~~g~Pdgi~~d 301 (337)
....|+++++ ||+.||+.-..+.+++++..+ ...... .+.+.+ .++..+|+++|
T Consensus 116 ~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-k~~~s~g~~~D 194 (287)
T PF03022_consen 116 PFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGD-KGSQSDGMAID 194 (287)
T ss_dssp EEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEEEEE
T ss_pred ceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccc-cCCCCceEEEC
Confidence 1256788876 889999999999999998874 221111 122222 22346999999
Q ss_pred CCCCEEEEecCC
Q psy4771 302 SKGNFLVSLVCP 313 (337)
Q Consensus 302 ~dG~l~va~~~~ 313 (337)
++|++|.+....
T Consensus 195 ~~G~ly~~~~~~ 206 (287)
T PF03022_consen 195 PNGNLYFTDVEQ 206 (287)
T ss_dssp TTTEEEEEECCC
T ss_pred CCCcEEEecCCC
Confidence 999999999776
No 30
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.84 E-value=8.6e-07 Score=78.49 Aligned_cols=195 Identities=16% Similarity=0.203 Sum_probs=102.4
Q ss_pred ccCccEEEe--eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEE
Q psy4771 62 IHGPEAVVK--HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYK 136 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~ 136 (337)
...+.+|++ +++.|| +....+.|+.++. |++.....+ ...+.+.||++-.+|.+++++... .++.
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l----------~g~~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPL----------DGFGDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-----------SS-SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeC----------CCCCCceeEEEECCCEEEEEEcCCCcEEE
Confidence 335667777 368899 7888899999987 454332223 234679999999888888887544 4666
Q ss_pred EEc--CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC-cEEEEcCCCC
Q psy4771 137 VNV--TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSSTK 213 (337)
Q Consensus 137 vd~--~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G-~lyvtd~~~~ 213 (337)
++. .+..+..-....-.. + +....=....|++.|+.+ ++|++.-..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l-~-----------------------------~~~~~N~G~EGla~D~~~~~L~v~kE~~- 139 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISL-G-----------------------------FPNKGNKGFEGLAYDPKTNRLFVAKERK- 139 (248)
T ss_dssp EEE----TT--EEEEEEEE---------------------------------S---SS--EEEEEETTTTEEEEEEESS-
T ss_pred EEEeccccccchhhceEEec-c-----------------------------cccCCCcceEEEEEcCCCCEEEEEeCCC-
Confidence 654 332221110000000 0 000011236799999964 587764321
Q ss_pred ccCceeeeeecCCccEEEEcC--CCCeeEEEe--------ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCc
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNP--KTKKNKVLI--------ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGK 283 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~--~~~~~~~~~--------~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~ 283 (337)
..+|+.++. ......... ..+.-+.+++++|..++||+....+.+|..++.+|.-.+.
T Consensus 140 ------------P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~ 207 (248)
T PF06977_consen 140 ------------PKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSS 207 (248)
T ss_dssp ------------SEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEE
T ss_pred ------------ChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEE
Confidence 124555543 111111111 1244689999999988999999999999999976642111
Q ss_pred eeeeecCCC------CCCCceeECCCCCEEEEe
Q psy4771 284 SEVFIDGLP------GLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 284 ~~~~~~~~~------g~Pdgi~~d~dG~l~va~ 310 (337)
.. +..+.. ..|.||++|++|++||+.
T Consensus 208 ~~-L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 208 LS-LDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EE--STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred EE-eCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 11 111111 248999999999999997
No 31
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.81 E-value=1e-06 Score=77.77 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=103.7
Q ss_pred ccEEEeeCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCe
Q psy4771 65 PEAVVKHKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQ 143 (337)
Q Consensus 65 P~~i~~~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~ 143 (337)
-|+|++-++.|| ..-.++..+++|....+.+..+.. .+.-+||+.|.+ +||++|....++.+||++-+
T Consensus 92 gEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y----------~~EGWGLt~dg~-~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 92 GEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPY----------PGEGWGLTSDGK-RLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-----------SSS--EEEECSS-CEEEE-SSSEEEEE-TTT-S
T ss_pred ceeEEEECCEEEEEEecCCeEEEEccccceEEEEEec----------CCcceEEEcCCC-EEEEECCccceEEECCcccc
Confidence 478888788999 899999999999876665544421 245679997644 89999987889999998765
Q ss_pred EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeee
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~ 223 (337)
....+.. ...| .+....|-+..- +|.||.--+.++
T Consensus 161 ~~~~i~V--~~~g--------------------------------~pv~~LNELE~i-~G~IyANVW~td---------- 195 (264)
T PF05096_consen 161 EVRTIQV--TDNG--------------------------------RPVSNLNELEYI-NGKIYANVWQTD---------- 195 (264)
T ss_dssp EEEEEE---EETT--------------------------------EE---EEEEEEE-TTEEEEEETTSS----------
T ss_pred eEEEEEE--EECC--------------------------------EECCCcEeEEEE-cCEEEEEeCCCC----------
Confidence 5443331 1122 256677888775 688997776644
Q ss_pred cCCccEEEEcCCCCeeEEEecc----------------ccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 224 SGSGRLIQYNPKTKKNKVLIAN----------------LHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~~~----------------~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
.|.++||.+|++....+- ...-||||.+++.+++||+--.=.+++++.+.
T Consensus 196 ----~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 196 ----RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp ----EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred ----eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 899999999998765421 23579999999999999998665677777764
No 32
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.78 E-value=2.5e-07 Score=87.19 Aligned_cols=175 Identities=20% Similarity=0.261 Sum_probs=106.1
Q ss_pred CeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCC-cceEEECCCC-cEEEEECCCcEEEEEcCCCeEEEEec
Q psy4771 73 GDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGR-PLGIKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLIS 149 (337)
Q Consensus 73 g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~~~l~~ 149 (337)
+++| +...+|++..+|..+.+.+.++ +..+. +.++++.+|| .+||+.....|..+|+.++++..-+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i----------~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~ 75 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARI----------PTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK 75 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEE----------E-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEE----------cCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe
Confidence 3455 6777899999998554444333 22233 4568899999 69999754459999998887544432
Q ss_pred cccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCcc
Q psy4771 150 MDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGR 228 (337)
Q Consensus 150 ~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~ 228 (337)
....|.++++++||+ +|+++.. .+.
T Consensus 76 ----------------------------------------~G~~~~~i~~s~DG~~~~v~n~~--------------~~~ 101 (369)
T PF02239_consen 76 ----------------------------------------VGGNPRGIAVSPDGKYVYVANYE--------------PGT 101 (369)
T ss_dssp -----------------------------------------SSEEEEEEE--TTTEEEEEEEE--------------TTE
T ss_pred ----------------------------------------cCCCcceEEEcCCCCEEEEEecC--------------CCc
Confidence 123489999999997 7777643 347
Q ss_pred EEEEcCCCCeeEEEeccc--------cceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeE
Q psy4771 229 LIQYNPKTKKNKVLIANL--------HFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 229 v~~~d~~~~~~~~~~~~~--------~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~ 300 (337)
+..+|.++.+........ ....+|..++.+...+++-...++|+.++.+....-.. ...+ ..-+|.+..+
T Consensus 102 v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-~~i~-~g~~~~D~~~ 179 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-TTIK-VGRFPHDGGF 179 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-EEEE---TTEEEEEE
T ss_pred eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-eeec-cccccccccc
Confidence 888887776543322211 23457777888877777878889999999765421111 1222 2346889999
Q ss_pred CCCCCE-EEEecCC
Q psy4771 301 DSKGNF-LVSLVCP 313 (337)
Q Consensus 301 d~dG~l-~va~~~~ 313 (337)
|++|++ ++|....
T Consensus 180 dpdgry~~va~~~s 193 (369)
T PF02239_consen 180 DPDGRYFLVAANGS 193 (369)
T ss_dssp -TTSSEEEEEEGGG
T ss_pred Ccccceeeeccccc
Confidence 999985 5655444
No 33
>KOG1214|consensus
Probab=98.74 E-value=1.7e-07 Score=92.14 Aligned_cols=158 Identities=17% Similarity=0.149 Sum_probs=112.6
Q ss_pred eccCcccCccEEEee---CCeEEEEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC
Q psy4771 57 LFENEIHGPEAVVKH---KGDLYMGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY 131 (337)
Q Consensus 57 ~~~g~~~~P~~i~~~---~g~ly~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~ 131 (337)
++...+..||+||++ .+..|+|....+|-.-.. |+.+.+.. ...+-.|.+|.+|+-+ +||.+|+.
T Consensus 1062 i~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf----------~tdLVNPR~iv~D~~rgnLYwtDWn 1131 (1289)
T KOG1214|consen 1062 IVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLF----------YTDLVNPRAIVVDPIRGNLYWTDWN 1131 (1289)
T ss_pred eecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEE----------eecccCcceEEeecccCceeecccc
Confidence 445567799999992 445559999988866543 33332211 1334679999999975 99999986
Q ss_pred Cc---EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEE
Q psy4771 132 FG---LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYW 207 (337)
Q Consensus 132 ~g---v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyv 207 (337)
+. |-+.++++...+.++.. .+..||++.+|+.-+ |-+
T Consensus 1132 RenPkIets~mDG~NrRilin~---------------------------------------DigLPNGLtfdpfs~~LCW 1172 (1289)
T KOG1214|consen 1132 RENPKIETSSMDGENRRILINT---------------------------------------DIGLPNGLTFDPFSKLLCW 1172 (1289)
T ss_pred ccCCcceeeccCCccceEEeec---------------------------------------ccCCCCCceeCcccceeeE
Confidence 42 77888876666666541 356799999999765 778
Q ss_pred EcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 208 SDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 208 td~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
.|.+++ ++--+.+++--.+++..+|.+|-+|.- +++++|.+|+..++|..+++-+.
T Consensus 1173 vDAGt~--------------rleC~~p~g~gRR~i~~~LqYPF~its--y~~~fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1173 VDAGTK--------------RLECTLPDGTGRRVIQNNLQYPFSITS--YADHFYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred EecCCc--------------ceeEecCCCCcchhhhhcccCceeeee--ccccceeeccccCceEEeecccc
Confidence 888765 444444443334567788999999864 55569999999999999988653
No 34
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.73 E-value=9.1e-07 Score=84.60 Aligned_cols=165 Identities=20% Similarity=0.278 Sum_probs=100.9
Q ss_pred ccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCC
Q psy4771 110 QCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDG 188 (337)
Q Consensus 110 ~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~ 188 (337)
.+..|.+|++.++|++||++.. ..|++++..++....+... |.-+ ..
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l-----------~~v~---------------------~~ 75 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTL-----------PEIV---------------------ND 75 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecC-----------Ccee---------------------cc
Confidence 4577999999999999999864 4488998766654443321 1000 00
Q ss_pred CCCCCCccEEEcCC-------CcEEEEcCCCCccCceeeeeecCCccEEEEcCC--CC---eeEEEeccc-----cceee
Q psy4771 189 AKPQIPNSVTVDSD-------GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK--TK---KNKVLIANL-----HFANG 251 (337)
Q Consensus 189 ~~~~~pn~v~vd~~-------G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~--~~---~~~~~~~~~-----~~p~g 251 (337)
.....+.+|+++|+ +.||++-+...- +. ......+|.|+..+ +. ..+.++..+ ++-..
T Consensus 76 ~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~-~~----~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~Ggr 150 (454)
T TIGR03606 76 AQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG-DK----ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGR 150 (454)
T ss_pred CCCCceeeEEECCCccccCCCcEEEEEEeccCC-CC----CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCce
Confidence 02345788888765 358887543210 00 00012356555432 11 122333332 44567
Q ss_pred EEEccCCCEEEEEeCCC--------------------------------CEEEEEEeeCCC--------CCceeeeecCC
Q psy4771 252 VELSADESFVIVAETMS--------------------------------SRVHRYYLKGPK--------QGKSEVFIDGL 291 (337)
Q Consensus 252 ia~~~dg~~lyva~~~~--------------------------------~~I~~~~~~g~~--------~~~~~~~~~~~ 291 (337)
|+++||| .|||+-... +.|+|++.+|.- ....++++-++
T Consensus 151 I~FgPDG-~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~ 229 (454)
T TIGR03606 151 LVFGPDG-KIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGH 229 (454)
T ss_pred EEECCCC-cEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEec
Confidence 9999999 499965432 268999988641 11246666655
Q ss_pred CCCCCceeECCCCCEEEEecCC
Q psy4771 292 PGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 292 ~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
-. |.||++|++|.||++.+..
T Consensus 230 RN-p~Gla~dp~G~Lw~~e~Gp 250 (454)
T TIGR03606 230 RN-PQGLAFTPDGTLYASEQGP 250 (454)
T ss_pred cc-cceeEECCCCCEEEEecCC
Confidence 44 9999999999999999877
No 35
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.68 E-value=5.1e-06 Score=75.60 Aligned_cols=207 Identities=15% Similarity=0.195 Sum_probs=116.3
Q ss_pred EEEe-eCCeEE-EEecC------------cEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCC------Cc
Q psy4771 67 AVVK-HKGDLY-MGVDG------------GHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN------GA 124 (337)
Q Consensus 67 ~i~~-~~g~ly-~d~~~------------g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~------G~ 124 (337)
++.+ ..+.|| .|.+. -+|+.+|. +++.....+.... .......+.+++|.. +.
T Consensus 5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~-----~~~~s~lndl~VD~~~~~~~~~~ 79 (287)
T PF03022_consen 5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDI-----APPDSFLNDLVVDVRDGNCDDGF 79 (287)
T ss_dssp EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCC-----S-TCGGEEEEEEECTTTTS-SEE
T ss_pred EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHH-----cccccccceEEEEccCCCCcceE
Confidence 4555 578888 77553 37888886 4443333343221 122345678888872 57
Q ss_pred EEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC--
Q psy4771 125 LHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-- 201 (337)
Q Consensus 125 lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-- 201 (337)
+|++|.. .+|..+|..+++..++....... .|....+.-.|. .++. .....+++.++
T Consensus 80 aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~------~p~~~~~~i~g~------~~~~--------~dg~~gial~~~~ 139 (287)
T PF03022_consen 80 AYITDSGGPGLIVYDLATGKSWRVLHNSFSP------DPDAGPFTIGGE------SFQW--------PDGIFGIALSPIS 139 (287)
T ss_dssp EEEEETTTCEEEEEETTTTEEEEEETCGCTT------S-SSEEEEETTE------EEEE--------TTSEEEEEE-TTS
T ss_pred EEEeCCCcCcEEEEEccCCcEEEEecCCcce------eccccceeccCc------eEec--------CCCccccccCCCC
Confidence 9999987 46999999999988877531111 122221111111 1111 11256677755
Q ss_pred -CCc-EEEEcCCCCccCceeeeeecCCccEEEEcCC-------------CCeeEEEeccccceeeEEEccCCCEEEEEeC
Q psy4771 202 -DGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK-------------TKKNKVLIANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 202 -~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~-------------~~~~~~~~~~~~~p~gia~~~dg~~lyva~~ 266 (337)
+|+ ||+.-.++. .+|++..+ ..+++.+........|++++++| .||+++.
T Consensus 140 ~d~r~LYf~~lss~--------------~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G-~ly~~~~ 204 (287)
T PF03022_consen 140 PDGRWLYFHPLSSR--------------KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNG-NLYFTDV 204 (287)
T ss_dssp TTS-EEEEEETT-S--------------EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTT-EEEEEEC
T ss_pred CCccEEEEEeCCCC--------------cEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCC-cEEEecC
Confidence 554 998876643 33333311 01122222222467899999988 7999999
Q ss_pred CCCEEEEEEeeCCC-CCceeeeecCC--CCCCCceeECC--CCCEEEEecCC
Q psy4771 267 MSSRVHRYYLKGPK-QGKSEVFIDGL--PGLPDNVKRDS--KGNFLVSLVCP 313 (337)
Q Consensus 267 ~~~~I~~~~~~g~~-~~~~~~~~~~~--~g~Pdgi~~d~--dG~l~va~~~~ 313 (337)
..+.|.+.+.++.. ..+.++++... --+|++++++. +|.||+....-
T Consensus 205 ~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl 256 (287)
T PF03022_consen 205 EQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRL 256 (287)
T ss_dssp CCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S-
T ss_pred CCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcc
Confidence 99999999987632 12344555422 23699999999 99999988544
No 36
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.64 E-value=5.7e-07 Score=83.68 Aligned_cols=160 Identities=18% Similarity=0.287 Sum_probs=96.0
Q ss_pred CCcceEEECCCCcEEEEECCCcEEEEEcCCCeE-EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQT-EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~-~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
.+|.+|++.|+|+|||++....|++++.+ +.. ..+.... ... ...
T Consensus 2 ~~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~-~v~--------------------------------~~~ 47 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLP-EVF--------------------------------ADG 47 (331)
T ss_dssp SSEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-T-TTB--------------------------------TST
T ss_pred CCceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccc-ccc--------------------------------ccc
Confidence 46999999999999999974448888844 444 3333210 111 112
Q ss_pred CCCCccEEEcCC----CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCC-----eeEEEec-------cccceeeEEE
Q psy4771 191 PQIPNSVTVDSD----GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTK-----KNKVLIA-------NLHFANGVEL 254 (337)
Q Consensus 191 ~~~pn~v~vd~~----G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~-----~~~~~~~-------~~~~p~gia~ 254 (337)
...+.+++++++ +.||++-....... ....-+|.|+....+ ..+.+.. ..+...+|++
T Consensus 48 ~~gllgia~~p~f~~n~~lYv~~t~~~~~~------~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~f 121 (331)
T PF07995_consen 48 ERGLLGIAFHPDFASNGYLYVYYTNADEDG------GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAF 121 (331)
T ss_dssp TBSEEEEEE-TTCCCC-EEEEEEEEE-TSS------SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE
T ss_pred cCCcccceeccccCCCCEEEEEEEcccCCC------CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccC
Confidence 446789999984 78998776320000 000114444433322 1122221 2455678999
Q ss_pred ccCCCEEEEEeCC-------------CCEEEEEEeeCCC----------CCceeeeecCCCCCCCceeECCC-CCEEEEe
Q psy4771 255 SADESFVIVAETM-------------SSRVHRYYLKGPK----------QGKSEVFIDGLPGLPDNVKRDSK-GNFLVSL 310 (337)
Q Consensus 255 ~~dg~~lyva~~~-------------~~~I~~~~~~g~~----------~~~~~~~~~~~~g~Pdgi~~d~d-G~l~va~ 310 (337)
+||| .|||+-.. .+.|+|++.+|.- ....++++.++-. |.++++|+. |+||++.
T Consensus 122 gpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d 199 (331)
T PF07995_consen 122 GPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAAD 199 (331)
T ss_dssp -TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEE
T ss_pred CCCC-cEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEc
Confidence 9999 79998633 3689999987631 1135777776655 899999999 9999999
Q ss_pred cCC
Q psy4771 311 VCP 313 (337)
Q Consensus 311 ~~~ 313 (337)
...
T Consensus 200 ~G~ 202 (331)
T PF07995_consen 200 NGP 202 (331)
T ss_dssp E-S
T ss_pred cCC
Confidence 765
No 37
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.63 E-value=6.7e-06 Score=73.81 Aligned_cols=209 Identities=13% Similarity=0.155 Sum_probs=123.1
Q ss_pred eEEEEecCcEEEEEe--C-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeE------
Q psy4771 74 DLYMGVDGGHILKLS--G-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQT------ 144 (337)
Q Consensus 74 ~ly~d~~~g~I~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~------ 144 (337)
..++....||++.+. + |..... +..+.+|.||+.+++ +||++. .+.|+++-......
T Consensus 20 la~sTYQagkL~~ig~~~~g~l~~~------------~r~F~r~MGl~~~~~-~l~~~t-~~qiw~f~~~~n~l~~~~~~ 85 (335)
T TIGR03032 20 LAVTTYQAGKLFFIGLQPNGELDVF------------ERTFPRPMGLAVSPQ-SLTLGT-RYQLWRFANVDNLLPAGQTH 85 (335)
T ss_pred EEEEeeecceEEEEEeCCCCcEEEE------------eeccCccceeeeeCC-eEEEEE-cceeEEcccccccccccccC
Confidence 345677777777763 2 333222 255688999999765 799996 46788872111111
Q ss_pred ----EEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccccCCC--------------CCCCCccEEEcCC
Q psy4771 145 ----EQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEIDGA--------------KPQIPNSVTVDSD 202 (337)
Q Consensus 145 ----~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~~~--------------~~~~pn~v~vd~~ 202 (337)
..+........|. ..-|+|++ .++.++ ....+..++..+.-. .--+.||+|+...
T Consensus 86 ~~~D~~yvPr~~~~TGd--idiHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g 162 (335)
T TIGR03032 86 PGYDRLYVPRASYVTGD--IDAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDG 162 (335)
T ss_pred CCCCeEEeeeeeeeccC--cchhheee-cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCC
Confidence 1111111111221 12345566 344443 223444444332222 1235789999653
Q ss_pred CcEEEEcCCCC-c-cCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCC
Q psy4771 203 GMVYWSDSSTK-Y-KSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPK 280 (337)
Q Consensus 203 G~lyvtd~~~~-~-~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~ 280 (337)
.--|||-.+.. . .+|. ....+|.+. +|-.+++ ++.+++.+|.+-.+. || .||++|++.++|.+++.+
T Consensus 163 ~p~yVTa~~~sD~~~gWR---~~~~~gG~v-idv~s~e--vl~~GLsmPhSPRWh-dg-rLwvldsgtGev~~vD~~--- 231 (335)
T TIGR03032 163 EPRYVTALSQSDVADGWR---EGRRDGGCV-IDIPSGE--VVASGLSMPHSPRWY-QG-KLWLLNSGRGELGYVDPQ--- 231 (335)
T ss_pred eEEEEEEeeccCCccccc---ccccCCeEE-EEeCCCC--EEEcCccCCcCCcEe-CC-eEEEEECCCCEEEEEcCC---
Confidence 34888765431 1 0110 112233333 4555564 578999999999986 55 599999999999999975
Q ss_pred CCceeeeecCCCCCCCceeECCCCC-EEEEecCC
Q psy4771 281 QGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 281 ~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
.|+.++.+. +||+|.|+++. |+ ++|++...
T Consensus 232 ~G~~e~Va~-vpG~~rGL~f~--G~llvVgmSk~ 262 (335)
T TIGR03032 232 AGKFQPVAF-LPGFTRGLAFA--GDFAFVGLSKL 262 (335)
T ss_pred CCcEEEEEE-CCCCCccccee--CCEEEEEeccc
Confidence 234666665 89999999998 66 67877655
No 38
>KOG1520|consensus
Probab=98.59 E-value=3.1e-07 Score=84.17 Aligned_cols=141 Identities=22% Similarity=0.350 Sum_probs=89.4
Q ss_pred cCccEEEe--eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-----
Q psy4771 63 HGPEAVVK--HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG----- 133 (337)
Q Consensus 63 ~~P~~i~~--~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g----- 133 (337)
-.|-+|++ .+|.+| +|..-| ++++++ ++..+.. ..+.++ ...-..+++.++++|.+|++|+...
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l--~~~~~G----~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd 187 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELL--ADEAEG----KPFKFLNDLDIDPEGVVYFTDSSSKYDRRD 187 (376)
T ss_pred CCcceEEeccCCCeEEEEeccee-eEEECCCCCcceec--cccccC----eeeeecCceeEcCCCeEEEeccccccchhh
Confidence 36999999 456899 888777 999987 3332211 111111 2233467999999999999997421
Q ss_pred -------------EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEc
Q psy4771 134 -------------LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVD 200 (337)
Q Consensus 134 -------------v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd 200 (337)
++++|+.+...+.+.. .+.+|||++++
T Consensus 188 ~~~a~l~g~~~GRl~~YD~~tK~~~VLld----------------------------------------~L~F~NGlaLS 227 (376)
T KOG1520|consen 188 FVFAALEGDPTGRLFRYDPSTKVTKVLLD----------------------------------------GLYFPNGLALS 227 (376)
T ss_pred eEEeeecCCCccceEEecCcccchhhhhh----------------------------------------cccccccccCC
Confidence 2222322222222211 58899999999
Q ss_pred CCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCC---CCeeEEEeccc-cceeeEEEccCCCEEEEEe
Q psy4771 201 SDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK---TKKNKVLIANL-HFANGVELSADESFVIVAE 265 (337)
Q Consensus 201 ~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~---~~~~~~~~~~~-~~p~gia~~~dg~~lyva~ 265 (337)
+|+. +.+++.... ++.+|-.+ -|+.++.++++ .+|..|..+++| ++||+-
T Consensus 228 ~d~sfvl~~Et~~~--------------ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G-~fWVal 282 (376)
T KOG1520|consen 228 PDGSFVLVAETTTA--------------RIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTG-HFWVAL 282 (376)
T ss_pred CCCCEEEEEeeccc--------------eeeeeEecCCccCchhhHhhcCCCCCcceeECCCC-CEEEEE
Confidence 9987 667776532 45444433 33346666644 589999999999 488776
No 39
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.57 E-value=6.1e-05 Score=66.86 Aligned_cols=191 Identities=15% Similarity=0.194 Sum_probs=110.3
Q ss_pred cEEEe--eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc---EEEEE
Q psy4771 66 EAVVK--HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG---LYKVN 138 (337)
Q Consensus 66 ~~i~~--~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g---v~~vd 138 (337)
.++++ +...|| +....-.|+.++. |++.....+ .....|.+|.+-.+|...++|...+ ++.+|
T Consensus 89 S~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL----------~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 89 SSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL----------TGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cceeeCCCcceEEEecCCCceEEEEecCCceEEEecc----------cccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 34444 377899 5555567888876 665332211 3356799999988888888876544 45566
Q ss_pred cCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCC-CcEEEEcCCCCccCc
Q psy4771 139 VTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSSTKYKSG 217 (337)
Q Consensus 139 ~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~-G~lyvtd~~~~~~~~ 217 (337)
+++.. ..+....-..... ...=....|+|.|+. +++||+-...-.
T Consensus 159 ~~t~~-~~~~~~~i~L~~~------------------------------~k~N~GfEGlA~d~~~~~l~~aKEr~P~--- 204 (316)
T COG3204 159 ADTTV-ISAKVQKIPLGTT------------------------------NKKNKGFEGLAWDPVDHRLFVAKERNPI--- 204 (316)
T ss_pred CCccE-EeccceEEecccc------------------------------CCCCcCceeeecCCCCceEEEEEccCCc---
Confidence 65432 2222110001000 001234579999985 568887654321
Q ss_pred eeeeeecCCccEEEEcCCCCeeEEEe-------cc--ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee
Q psy4771 218 LFEGLTSGSGRLIQYNPKTKKNKVLI-------AN--LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI 288 (337)
Q Consensus 218 ~~~~~~~~~G~v~~~d~~~~~~~~~~-------~~--~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~ 288 (337)
+||.++........-. .. +.--.|+.+++..++|+|-...++.+..++.+|.-.+. -.+.
T Consensus 205 ----------~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~-lsL~ 273 (316)
T COG3204 205 ----------GIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIEL-LSLT 273 (316)
T ss_pred ----------EEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeee-EEec
Confidence 4444442211111000 00 12346888887777898888888999999988752211 1112
Q ss_pred cC-------CCCCCCceeECCCCCEEEEecC
Q psy4771 289 DG-------LPGLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 289 ~~-------~~g~Pdgi~~d~dG~l~va~~~ 312 (337)
.+ .| .+.||+.|.+|++|+..-.
T Consensus 274 ~g~~gL~~dip-qaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 274 KGNHGLSSDIP-QAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred cCCCCCcccCC-CcceeEECCCCCEEEEecC
Confidence 22 23 3899999999999998743
No 40
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.56 E-value=3.1e-07 Score=67.28 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=60.6
Q ss_pred ccEEEcCCCcEEEEcCCCCccCce---eeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 195 NSVTVDSDGMVYWSDSSTKYKSGL---FEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 195 n~v~vd~~G~lyvtd~~~~~~~~~---~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
|||+.-....+|+|........++ ...+.-+.|.|..||+ ++...+++++.+||||++++|++.|||++..++.|
T Consensus 1 NDIvavG~~sFy~TNDhyf~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I 78 (86)
T PF01731_consen 1 NDIVAVGPDSFYVTNDHYFTDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLAHSI 78 (86)
T ss_pred CCEEEECcCcEEEECchhhCcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeE
Confidence 455544444799998764322221 1123446688999997 45778899999999999999999999999999999
Q ss_pred EEEEee
Q psy4771 272 HRYYLK 277 (337)
Q Consensus 272 ~~~~~~ 277 (337)
.+|...
T Consensus 79 ~vy~~~ 84 (86)
T PF01731_consen 79 HVYKRH 84 (86)
T ss_pred EEEEec
Confidence 999864
No 41
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.55 E-value=1e-05 Score=77.43 Aligned_cols=181 Identities=12% Similarity=0.211 Sum_probs=107.4
Q ss_pred CceeccCcccCccEEEe-eCCeEEEEec-CcEEEEEeCCc--eeEEEecCccccCccccCccCCcceEEECCC-------
Q psy4771 54 AEKLFENEIHGPEAVVK-HKGDLYMGVD-GGHILKLSGGK--LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN------- 122 (337)
Q Consensus 54 ~~~~~~g~~~~P~~i~~-~~g~ly~d~~-~g~I~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~------- 122 (337)
.+.+++| +..|.+|++ .+|.+|+... .|+|++++.++ ...+..+.... .....+.+.||+++|+
T Consensus 22 ~~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~----~~~ge~GLlglal~PdF~~~~~n 96 (454)
T TIGR03606 22 KKVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIV----NDAQHNGLLGLALHPDFMQEKGN 96 (454)
T ss_pred EEEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCcee----ccCCCCceeeEEECCCccccCCC
Confidence 4556555 779999999 8889997777 69999997632 22222221110 0012466899999876
Q ss_pred CcEEEEECC----------CcEEEEEcCC--Ce---EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccC
Q psy4771 123 GALHVADAY----------FGLYKVNVTT--GQ---TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187 (337)
Q Consensus 123 G~lyVad~~----------~gv~~vd~~~--g~---~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~ 187 (337)
+.|||+-+. ..|.++..+. .. .+.+.. ...
T Consensus 97 ~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~-----------------------------------~lP 141 (454)
T TIGR03606 97 PYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLA-----------------------------------GLP 141 (454)
T ss_pred cEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEe-----------------------------------cCC
Confidence 368998421 2355554321 11 111111 000
Q ss_pred CCCCCCCccEEEcCCCcEEEEcCCCCc--------cCceee----------eeecCCccEEEEcCCCC-----------e
Q psy4771 188 GAKPQIPNSVTVDSDGMVYWSDSSTKY--------KSGLFE----------GLTSGSGRLIQYNPKTK-----------K 238 (337)
Q Consensus 188 ~~~~~~pn~v~vd~~G~lyvtd~~~~~--------~~~~~~----------~~~~~~G~v~~~d~~~~-----------~ 238 (337)
......-..|++++||.|||+--.... ....+. -.....|.|+|+|+++. .
T Consensus 142 ~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~ 221 (454)
T TIGR03606 142 AGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVV 221 (454)
T ss_pred CCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCc
Confidence 001223467889999999997554311 000000 01235689999998743 1
Q ss_pred eEEEeccccceeeEEEccCCCEEEEEeCCC---CEEEEEE
Q psy4771 239 NKVLIANLHFANGVELSADESFVIVAETMS---SRVHRYY 275 (337)
Q Consensus 239 ~~~~~~~~~~p~gia~~~dg~~lyva~~~~---~~I~~~~ 275 (337)
.++..-++..|.|++++|+| .||++|.+. ..|.++.
T Consensus 222 ~eIyA~G~RNp~Gla~dp~G-~Lw~~e~Gp~~~DEiN~I~ 260 (454)
T TIGR03606 222 SHIFTYGHRNPQGLAFTPDG-TLYASEQGPNSDDELNIIV 260 (454)
T ss_pred ceEEEEeccccceeEECCCC-CEEEEecCCCCCcEEEEec
Confidence 25667789999999999977 599999775 3455544
No 42
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.55 E-value=6e-06 Score=73.15 Aligned_cols=165 Identities=14% Similarity=0.135 Sum_probs=84.4
Q ss_pred eeccCcccCccEEEe-eCCeEE-EEecCcEEEEEeC---Cce---eEEE--ecCccccCccccCccCCcceEEECCCC-c
Q psy4771 56 KLFENEIHGPEAVVK-HKGDLY-MGVDGGHILKLSG---GKL---VPVV--KLGKDCYGFKYEQQCGRPLGIKFDKNG-A 124 (337)
Q Consensus 56 ~~~~g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~---~~~---~~~~--~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~ 124 (337)
++.-.....||+|++ .++.+. ++..+++++.++. .+. ..+. .++.. ...-..-.||++|+.+ +
T Consensus 58 ~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~------~~~N~G~EGla~D~~~~~ 131 (248)
T PF06977_consen 58 RIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFP------NKGNKGFEGLAYDPKTNR 131 (248)
T ss_dssp EEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---------SS--EEEEEETTTTE
T ss_pred EEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccc------cCCCcceEEEEEcCCCCE
Confidence 333334568999999 666666 6777898988764 111 1111 12211 0111236799999985 8
Q ss_pred EEEEECC--CcEEEEEc--CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEc
Q psy4771 125 LHVADAY--FGLYKVNV--TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVD 200 (337)
Q Consensus 125 lyVad~~--~gv~~vd~--~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd 200 (337)
||++... .+|+.++. ........... .... ......-+.+++++
T Consensus 132 L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~--~~~~------------------------------~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 132 LFVAKERKPKRLYEVNGFPGGFDLFVSDDQ--DLDD------------------------------DKLFVRDLSGLSYD 179 (248)
T ss_dssp EEEEEESSSEEEEEEESTT-SS--EEEE-H--HHH-------------------------------HT--SS---EEEEE
T ss_pred EEEEeCCCChhhEEEccccCccceeecccc--cccc------------------------------ccceeccccceEEc
Confidence 9988543 24777765 22222222110 0000 01134558999999
Q ss_pred CC-CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEE---Ee-------ccccceeeEEEccCCCEEEEEeCCCC
Q psy4771 201 SD-GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKV---LI-------ANLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 201 ~~-G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~---~~-------~~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
+. |++|+....++ +|..+|.+ |++.. +. ..+..|-|||++++| .|||+.. .|
T Consensus 180 p~t~~lliLS~es~--------------~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LYIvsE-pN 242 (248)
T PF06977_consen 180 PRTGHLLILSDESR--------------LLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLYIVSE-PN 242 (248)
T ss_dssp TTTTEEEEEETTTT--------------EEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET-TT
T ss_pred CCCCeEEEEECCCC--------------eEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCC-CEEEEcC-Cc
Confidence 85 77887765543 66666654 33211 12 235679999999999 5888875 67
Q ss_pred EEEEEE
Q psy4771 270 RVHRYY 275 (337)
Q Consensus 270 ~I~~~~ 275 (337)
..++|.
T Consensus 243 lfy~f~ 248 (248)
T PF06977_consen 243 LFYRFE 248 (248)
T ss_dssp EEEEEE
T ss_pred eEEEeC
Confidence 888874
No 43
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.47 E-value=3.9e-06 Score=82.20 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=63.4
Q ss_pred ccEEEEcCCC-----CeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCC------CCcee-eeecC-CCC
Q psy4771 227 GRLIQYNPKT-----KKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPK------QGKSE-VFIDG-LPG 293 (337)
Q Consensus 227 G~v~~~d~~~-----~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~------~~~~~-~~~~~-~~g 293 (337)
++|..+|..+ .++...+.-...|.|++++|||+++|++...++.|.+++++.-+ +.-.. +..+- +.-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 4688888876 34444455667999999999999999999999999999986421 11111 11111 112
Q ss_pred CCCceeECCCCCEEEEecCC
Q psy4771 294 LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 294 ~Pdgi~~d~dG~l~va~~~~ 313 (337)
.|--.++|.+|+.|++++..
T Consensus 376 GPLHTaFDg~G~aytslf~d 395 (635)
T PRK02888 376 GPLHTAFDGRGNAYTTLFLD 395 (635)
T ss_pred CcceEEECCCCCEEEeEeec
Confidence 38889999999999999866
No 44
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.30 E-value=5.2e-05 Score=71.53 Aligned_cols=157 Identities=14% Similarity=0.130 Sum_probs=90.3
Q ss_pred cEEEe-e-CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC-CcEEEEEcCC
Q psy4771 66 EAVVK-H-KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY-FGLYKVNVTT 141 (337)
Q Consensus 66 ~~i~~-~-~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~-~gv~~vd~~~ 141 (337)
.++.+ . +..+|+...+|.|.++|..+.+.+.++ ..+..|.|+++++|| .+|++... ..+..+|.++
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i----------~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t 109 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI----------KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET 109 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE----------E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE----------ecCCCcceEEEcCCCCEEEEEecCCCceeEecccc
Confidence 34455 3 456897778999999998544444332 345679999999999 56777644 4588899887
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEG 221 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~ 221 (337)
.+....+... ...+. ..-....+|..++....|+....
T Consensus 110 le~v~~I~~~-~~~~~-------------------------------~~~~Rv~aIv~s~~~~~fVv~lk---------- 147 (369)
T PF02239_consen 110 LEPVKTIPTG-GMPVD-------------------------------GPESRVAAIVASPGRPEFVVNLK---------- 147 (369)
T ss_dssp --EEEEEE---EE-TT-------------------------------TS---EEEEEE-SSSSEEEEEET----------
T ss_pred ccceeecccc-ccccc-------------------------------ccCCCceeEEecCCCCEEEEEEc----------
Confidence 6654443210 00000 01122345555555554443322
Q ss_pred eecCCccEEEEcCCCCe--eEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 222 LTSGSGRLIQYNPKTKK--NKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 222 ~~~~~G~v~~~d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
..|.|+.+|..+.+ ......-..+|++..+++++++++++....+.|.+++..
T Consensus 148 ---d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 148 ---DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp ---TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred ---cCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence 24578888755432 112333456899999999999999988778888777754
No 45
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=0.00026 Score=68.76 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=73.5
Q ss_pred eEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 116 GIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 116 Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
..++++|| .|+++.... .|+.+|.++++.+.+... .
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~----------------------------------------~ 305 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRH----------------------------------------R 305 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccC----------------------------------------C
Confidence 57899999 576653332 399999988877665421 1
Q ss_pred CCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC--
Q psy4771 192 QIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS-- 268 (337)
Q Consensus 192 ~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~-- 268 (337)
......++++||+ |+++.... ....||++|.++++.+.+........+.+++|||+.|+++....
T Consensus 306 ~~~~~p~wSpDG~~I~f~s~~~------------g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~ 373 (448)
T PRK04792 306 AIDTEPSWHPDGKSLIFTSERG------------GKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGK 373 (448)
T ss_pred CCccceEECCCCCEEEEEECCC------------CCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCc
Confidence 1234567888886 66654321 12379999988887766543323344578999999998876543
Q ss_pred CEEEEEEeeCC
Q psy4771 269 SRVHRYYLKGP 279 (337)
Q Consensus 269 ~~I~~~~~~g~ 279 (337)
.+|++++++++
T Consensus 374 ~~I~~~dl~~g 384 (448)
T PRK04792 374 FNIARQDLETG 384 (448)
T ss_pred eEEEEEECCCC
Confidence 46778887654
No 46
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.29 E-value=3.6e-06 Score=62.10 Aligned_cols=58 Identities=22% Similarity=0.378 Sum_probs=44.1
Q ss_pred ceEEECCC-CcEEEEEC-----------------CCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCccc
Q psy4771 115 LGIKFDKN-GALHVADA-----------------YFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQ 175 (337)
Q Consensus 115 ~Gl~~d~~-G~lyVad~-----------------~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~ 175 (337)
+++.++++ |.+|++|+ ..| ++++|+.+++.+.+..
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-------------------------- 54 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-------------------------- 54 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE--------------------------
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh--------------------------
Confidence 47899998 89999997 123 9999999999988876
Q ss_pred ccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCC
Q psy4771 176 TEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSST 212 (337)
Q Consensus 176 ~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~ 212 (337)
.+.+||||++++|+. +.|++...
T Consensus 55 --------------~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 55 --------------GLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp --------------EESSEEEEEE-TTSSEEEEEEGGG
T ss_pred --------------CCCccCeEEEcCCCCEEEEEeccC
Confidence 477899999999997 88888764
No 47
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.29 E-value=5.1e-05 Score=70.61 Aligned_cols=110 Identities=18% Similarity=0.160 Sum_probs=80.1
Q ss_pred cEEEEECC-----CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEE
Q psy4771 124 ALHVADAY-----FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVT 198 (337)
Q Consensus 124 ~lyVad~~-----~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~ 198 (337)
++||.|.. +.|..||.+++++...+. ....|+++
T Consensus 14 ~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~----------------------------------------~G~~P~~~- 52 (352)
T TIGR02658 14 RVYVLDPGHFAATTQVYTIDGEAGRVLGMTD----------------------------------------GGFLPNPV- 52 (352)
T ss_pred EEEEECCcccccCceEEEEECCCCEEEEEEE----------------------------------------ccCCCcee-
Confidence 79999976 359999998877655442 12357886
Q ss_pred EcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec--------cccceeeEEEccCCCEEEEEeCC-C
Q psy4771 199 VDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA--------NLHFANGVELSADESFVIVAETM-S 268 (337)
Q Consensus 199 vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--------~~~~p~gia~~~dg~~lyva~~~-~ 268 (337)
+++||+ +|++.+.... ..-......|-.+|.++++...-.. ....|+.+++++||++|||++.. .
T Consensus 53 ~spDg~~lyva~~~~~R-----~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~ 127 (352)
T TIGR02658 53 VASDGSFFAHASTVYSR-----IARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS 127 (352)
T ss_pred ECCCCCEEEEEeccccc-----cccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCC
Confidence 999986 9999984321 0112345689999999887643222 14567799999999999999977 8
Q ss_pred CEEEEEEeeCC
Q psy4771 269 SRVHRYYLKGP 279 (337)
Q Consensus 269 ~~I~~~~~~g~ 279 (337)
+.|.++|+...
T Consensus 128 ~~V~VvD~~~~ 138 (352)
T TIGR02658 128 PAVGVVDLEGK 138 (352)
T ss_pred CEEEEEECCCC
Confidence 99999998653
No 48
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.00032 Score=67.83 Aligned_cols=163 Identities=15% Similarity=0.199 Sum_probs=97.5
Q ss_pred eEEEEec--CcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC---CcEEEEEcCCCeEE
Q psy4771 74 DLYMGVD--GGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY---FGLYKVNVTTGQTE 145 (337)
Q Consensus 74 ~ly~d~~--~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~---~gv~~vd~~~g~~~ 145 (337)
.+|++.. +..|+.++. +..+.+..+ .+.-...++.++| .|+++... ..|+.+|.++++.+
T Consensus 216 lay~s~~~g~~~i~~~dl~~g~~~~l~~~------------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 283 (435)
T PRK05137 216 ITYMSYANGRPRVYLLDLETGQRELVGNF------------PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT 283 (435)
T ss_pred EEEEEecCCCCEEEEEECCCCcEEEeecC------------CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE
Confidence 3455543 457888886 333333211 1223467899999 56555332 23999999888776
Q ss_pred EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeec
Q psy4771 146 QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTS 224 (337)
Q Consensus 146 ~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~ 224 (337)
.+... . .......+++||+ |+|+....
T Consensus 284 ~Lt~~----~------------------------------------~~~~~~~~spDG~~i~f~s~~~------------ 311 (435)
T PRK05137 284 RLTDS----P------------------------------------AIDTSPSYSPDGSQIVFESDRS------------ 311 (435)
T ss_pred EccCC----C------------------------------------CccCceeEcCCCCEEEEEECCC------------
Confidence 66421 1 1124567888986 66554321
Q ss_pred CCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECC
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM--SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS 302 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~--~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~ 302 (337)
....||++|.++++.+.+..+...-...+++|||+.|+++... ..+|+.+++++.. ...+... .....+.+.+
T Consensus 312 g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt~~--~~~~~p~~sp 386 (435)
T PRK05137 312 GSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG---ERILTSG--FLVEGPTWAP 386 (435)
T ss_pred CCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc---eEeccCC--CCCCCCeECC
Confidence 1237899998887776665432233457899999999877643 3578888875432 2333221 2245677888
Q ss_pred CCC
Q psy4771 303 KGN 305 (337)
Q Consensus 303 dG~ 305 (337)
||+
T Consensus 387 DG~ 389 (435)
T PRK05137 387 NGR 389 (435)
T ss_pred CCC
Confidence 887
No 49
>KOG4499|consensus
Probab=98.20 E-value=5.1e-05 Score=65.16 Aligned_cols=152 Identities=15% Similarity=0.240 Sum_probs=90.2
Q ss_pred ccccccCceeccCccc------CccEEEeeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECC
Q psy4771 48 NEKLNNAEKLFENEIH------GPEAVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK 121 (337)
Q Consensus 48 ~~~l~~~~~~~~g~~~------~P~~i~~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~ 121 (337)
+++++++..-..|.++ .|..+...++.||+...+|++-.+. ...+-|+||++|.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~--------------------~~v~IsNgl~Wd~ 167 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIW--------------------NCVGISNGLAWDS 167 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeee--------------------hhccCCccccccc
Confidence 5566666655555444 1222222455666655555444431 2235589999998
Q ss_pred CC-cEEEEECCC-cE--EEEEcCCCeEE---EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCC
Q psy4771 122 NG-ALHVADAYF-GL--YKVNVTTGQTE---QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIP 194 (337)
Q Consensus 122 ~G-~lyVad~~~-gv--~~vd~~~g~~~---~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~p 194 (337)
+- ..|+.|+-+ .| +.+|-.+|.+. .+... ... +......|
T Consensus 168 d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dl--------------------------------rk~-~~~e~~~P 214 (310)
T KOG4499|consen 168 DAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDL--------------------------------RKS-QPFESLEP 214 (310)
T ss_pred cCcEEEEEccCceEEeeeecCCCcccccCcceeEEe--------------------------------ccC-CCcCCCCC
Confidence 86 889998653 46 55556666532 22211 000 01124569
Q ss_pred ccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEE-eccccceeeEEEc-cCCCEEEEEeC
Q psy4771 195 NSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL-IANLHFANGVELS-ADESFVIVAET 266 (337)
Q Consensus 195 n~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~-~~~~~~p~gia~~-~dg~~lyva~~ 266 (337)
.|+++|.+|+|||+..+ .|+|+++||.+|++..- .-....-...||. ++-+.+||+..
T Consensus 215 DGm~ID~eG~L~Va~~n--------------g~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 215 DGMTIDTEGNLYVATFN--------------GGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred CcceEccCCcEEEEEec--------------CcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 99999999999999986 35999999999975321 1123344567775 44446777664
No 50
>KOG0291|consensus
Probab=98.19 E-value=0.00033 Score=69.06 Aligned_cols=185 Identities=14% Similarity=0.185 Sum_probs=124.8
Q ss_pred CccEEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcC
Q psy4771 64 GPEAVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVT 140 (337)
Q Consensus 64 ~P~~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~ 140 (337)
.-.++++ .||.+. ++..+|+|-.|+....-.+.+|.+ ++ ....++.|...|+..++.+-.| |+..|..
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte--------Ht-s~Vt~v~f~~~g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE--------HT-SGVTAVQFTARGNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc--------CC-CceEEEEEEecCCEEEEeecCCeEEeeeec
Confidence 3455666 455544 899999999998755445555543 22 3467999999999999976666 8888875
Q ss_pred CC-eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCcee
Q psy4771 141 TG-QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLF 219 (337)
Q Consensus 141 ~g-~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~ 219 (337)
.. ..+++..+ .....+.+++|+.|.|.++-....|
T Consensus 423 RYrNfRTft~P---------------------------------------~p~QfscvavD~sGelV~AG~~d~F----- 458 (893)
T KOG0291|consen 423 RYRNFRTFTSP---------------------------------------EPIQFSCVAVDPSGELVCAGAQDSF----- 458 (893)
T ss_pred ccceeeeecCC---------------------------------------CceeeeEEEEcCCCCEEEeeccceE-----
Confidence 33 34444431 1234578999999998877665443
Q ss_pred eeeecCCccEEEEcCCCCeeEEEeccccce-eeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCce
Q psy4771 220 EGLTSGSGRLIQYNPKTKKNKVLIANLHFA-NGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNV 298 (337)
Q Consensus 220 ~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p-~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi 298 (337)
.|+.++.++|+..-++.|...| .+++++++++ +.++-+..++|...++=+. .++.+.+.- ....-++
T Consensus 459 --------~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s-~~~vEtl~i--~sdvl~v 526 (893)
T KOG0291|consen 459 --------EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSS-SGTVETLEI--RSDVLAV 526 (893)
T ss_pred --------EEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeecc-CceeeeEee--ccceeEE
Confidence 7888888899876666676666 6899999997 6666666788888777433 223343321 1224567
Q ss_pred eECCCCC-EEEEecCC
Q psy4771 299 KRDSKGN-FLVSLVCP 313 (337)
Q Consensus 299 ~~d~dG~-l~va~~~~ 313 (337)
++.+||. +-||...+
T Consensus 527 sfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 527 SFRPDGKELAVATLDG 542 (893)
T ss_pred EEcCCCCeEEEEEecc
Confidence 7777775 77776654
No 51
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.14 E-value=0.00092 Score=64.60 Aligned_cols=134 Identities=14% Similarity=0.186 Sum_probs=82.7
Q ss_pred ceEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 115 LGIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 115 ~Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
...+++++| .|+++.... .|+.+|.++++.+.+...
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~---------------------------------------- 290 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNH---------------------------------------- 290 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccC----------------------------------------
Confidence 367899999 565553222 399999988877665420
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC-
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS- 268 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~- 268 (337)
.......++++||+ |+++..... ...||.+|.++++.+.+..........+++|||+.|+++....
T Consensus 291 ~~~~~~~~~spDG~~l~f~sd~~g------------~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 291 FGIDTEPTWAPDGKSIYFTSDRGG------------RPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred CCCccceEECCCCCEEEEEECCCC------------CceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCC
Confidence 11124568899987 665532211 1268888887777655543333445689999999998875433
Q ss_pred -CEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 269 -SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 269 -~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
.+|+.++++++. ...+..+ .......+.+||+
T Consensus 359 ~~~I~v~d~~~g~---~~~Lt~~--~~~~~p~~spdG~ 391 (433)
T PRK04922 359 QYRIAVMDLSTGS---VRTLTPG--SLDESPSFAPNGS 391 (433)
T ss_pred ceeEEEEECCCCC---eEECCCC--CCCCCceECCCCC
Confidence 468888876432 2333321 1234557788887
No 52
>KOG0318|consensus
Probab=98.12 E-value=0.00087 Score=63.59 Aligned_cols=184 Identities=20% Similarity=0.194 Sum_probs=114.9
Q ss_pred CccEEEe--eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCC
Q psy4771 64 GPEAVVK--HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTT 141 (337)
Q Consensus 64 ~P~~i~~--~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~ 141 (337)
.=..+++ ++..||+...+|+|..|+.+....-..+|+ .....-.+|+.+..+.++.+.....+.+++.++
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~--------~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~ 393 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK--------GHTNQIKGMAASESGELFTIGWDDTLRVISLKD 393 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc--------cccceEEEEeecCCCcEEEEecCCeEEEEeccc
Confidence 3344555 356789999999999999865443322222 223446789998889999998767788887654
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFE 220 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~ 220 (337)
+....-.. + .-...|-++++.++|. +.++.-+
T Consensus 394 ~~~t~~~~---------------~-----------------------~lg~QP~~lav~~d~~~avv~~~~--------- 426 (603)
T KOG0318|consen 394 NGYTKSEV---------------V-----------------------KLGSQPKGLAVLSDGGTAVVACIS--------- 426 (603)
T ss_pred Ccccccce---------------e-----------------------ecCCCceeEEEcCCCCEEEEEecC---------
Confidence 32211100 0 0123577999999874 4444433
Q ss_pred eeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeE
Q psy4771 221 GLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~ 300 (337)
.|..+...++-.+ ..-...+.++|++||++.+-|.-. .+.|+.|.+.|..+.......+ ..+-+.-++.
T Consensus 427 -------~iv~l~~~~~~~~--~~~~y~~s~vAv~~~~~~vaVGG~-Dgkvhvysl~g~~l~ee~~~~~-h~a~iT~vay 495 (603)
T KOG0318|consen 427 -------DIVLLQDQTKVSS--IPIGYESSAVAVSPDGSEVAVGGQ-DGKVHVYSLSGDELKEEAKLLE-HRAAITDVAY 495 (603)
T ss_pred -------cEEEEecCCccee--eccccccceEEEcCCCCEEEEecc-cceEEEEEecCCcccceeeeec-ccCCceEEEE
Confidence 2222221122111 222346889999999986666543 4569999999865533333333 4566899999
Q ss_pred CCCCCEEEEecCC
Q psy4771 301 DSKGNFLVSLVCP 313 (337)
Q Consensus 301 d~dG~l~va~~~~ 313 (337)
.+||.++++.-..
T Consensus 496 Spd~~yla~~Da~ 508 (603)
T KOG0318|consen 496 SPDGAYLAAGDAS 508 (603)
T ss_pred CCCCcEEEEeccC
Confidence 9999988887655
No 53
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=0.0013 Score=63.46 Aligned_cols=134 Identities=13% Similarity=0.162 Sum_probs=79.3
Q ss_pred ceEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 115 LGIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 115 ~Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
...++.+|| .|+++-... .|+.+|.+++..+.+.. ..
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~----~~----------------------------------- 283 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ----SS----------------------------------- 283 (427)
T ss_pred cceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC----CC-----------------------------------
Confidence 467899999 566553332 38889987776555432 00
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC-
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS- 268 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~- 268 (337)
.......+++||+ |+++..... .-.||.++..+++.+.+..........+++|||+.|+++....
T Consensus 284 -~~~~~~~wSpDG~~l~f~s~~~g------------~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g 350 (427)
T PRK02889 284 -GIDTEPFFSPDGRSIYFTSDRGG------------APQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGG 350 (427)
T ss_pred -CCCcCeEEcCCCCEEEEEecCCC------------CcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCC
Confidence 1123467899997 665532211 1268888877666555442222334578999999987665433
Q ss_pred -CEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 269 -SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 269 -~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
.+|++++++++. ...+.+. +.....++.+||+
T Consensus 351 ~~~I~v~d~~~g~---~~~lt~~--~~~~~p~~spdg~ 383 (427)
T PRK02889 351 AFKLYVQDLATGQ---VTALTDT--TRDESPSFAPNGR 383 (427)
T ss_pred cEEEEEEECCCCC---eEEccCC--CCccCceECCCCC
Confidence 468888876532 2223321 1234567777776
No 54
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.09 E-value=0.0013 Score=63.42 Aligned_cols=133 Identities=15% Similarity=0.183 Sum_probs=82.7
Q ss_pred eEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 116 GIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 116 Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
..+++||| .|+++.... .|+.+|.++++.+.+... .
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~----------------------------------------~ 286 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG----------------------------------------R 286 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC----------------------------------------C
Confidence 57899999 576653322 499999988877766431 1
Q ss_pred CCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--C
Q psy4771 192 QIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM--S 268 (337)
Q Consensus 192 ~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~--~ 268 (337)
.......+++||+ |+++..... .-.||++|.++++.+.+..........+++|||+.|+++... .
T Consensus 287 ~~~~~~~wSPDG~~I~f~s~~~g------------~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~ 354 (429)
T PRK03629 287 SNNTEPTWFPDSQNLAYTSDQAG------------RPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ 354 (429)
T ss_pred CCcCceEECCCCCEEEEEeCCCC------------CceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCC
Confidence 1235678899997 554433211 127899998888776654443444568899999998776543 3
Q ss_pred CEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 269 SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 269 ~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
..|+.++++++. .+.+... ..-....+.+||+
T Consensus 355 ~~I~~~dl~~g~---~~~Lt~~--~~~~~p~~SpDG~ 386 (429)
T PRK03629 355 QHIAKQDLATGG---VQVLTDT--FLDETPSIAPNGT 386 (429)
T ss_pred ceEEEEECCCCC---eEEeCCC--CCCCCceECCCCC
Confidence 468888876542 3333321 1112456677776
No 55
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.08 E-value=1e-05 Score=46.22 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=25.2
Q ss_pred ccceeeEEEccCCCEEEEEeCCCCEEEEE
Q psy4771 246 LHFANGVELSADESFVIVAETMSSRVHRY 274 (337)
Q Consensus 246 ~~~p~gia~~~dg~~lyva~~~~~~I~~~ 274 (337)
|..|.|||++++| .|||+|++++||++|
T Consensus 1 f~~P~gvav~~~g-~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDG-NIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCC-CEEEEECCCCEEEEC
Confidence 4689999999887 699999999999986
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.04 E-value=0.0022 Score=56.12 Aligned_cols=179 Identities=18% Similarity=0.158 Sum_probs=108.1
Q ss_pred EEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCe
Q psy4771 67 AVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQ 143 (337)
Q Consensus 67 ~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~ 143 (337)
.+.+ .++ .+++...++.|..|+..+......+. .......++.+.++++++++... ..+..+|..+++
T Consensus 56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 126 (289)
T cd00200 56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLT---------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK 126 (289)
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe---------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE
Confidence 5555 344 67777778989888864322222221 11235678999998888887653 447788876554
Q ss_pred EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeee
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~ 223 (337)
...... + .......+++++++.++++...
T Consensus 127 ~~~~~~------~---------------------------------~~~~i~~~~~~~~~~~l~~~~~------------ 155 (289)
T cd00200 127 CLTTLR------G---------------------------------HTDWVNSVAFSPDGTFVASSSQ------------ 155 (289)
T ss_pred EEEEec------c---------------------------------CCCcEEEEEEcCcCCEEEEEcC------------
Confidence 333221 0 1123678888887765544431
Q ss_pred cCCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECC
Q psy4771 224 SGSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS 302 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~ 302 (337)
+|.|..+|..+++...... .-.....++++++++.++++.. .+.|..+++..... ...+.. .......+++++
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~--~~~~~~-~~~~i~~~~~~~ 229 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKC--LGTLRG-HENGVNSVAFSP 229 (289)
T ss_pred --CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCce--ecchhh-cCCceEEEEEcC
Confidence 3477777776554333222 2235688999999987877776 77899998764211 111111 223467788888
Q ss_pred CCCEEEEec
Q psy4771 303 KGNFLVSLV 311 (337)
Q Consensus 303 dG~l~va~~ 311 (337)
++.++++..
T Consensus 230 ~~~~~~~~~ 238 (289)
T cd00200 230 DGYLLASGS 238 (289)
T ss_pred CCcEEEEEc
Confidence 877777665
No 57
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.04 E-value=0.0013 Score=63.68 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=74.4
Q ss_pred cceEEECCCC-cEEEEECC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 114 PLGIKFDKNG-ALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 114 P~Gl~~d~~G-~lyVad~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
-...++.+|| .|+++... ..|+.+|.++|+.+.+.. ..+
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~----~~g--------------------------------- 246 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN----FPG--------------------------------- 246 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec----CCC---------------------------------
Confidence 3468889998 45444322 249999998887766542 111
Q ss_pred CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC-
Q psy4771 190 KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM- 267 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~- 267 (337)
.....++++||+ |+++... +....||.+|.++++.+.+..........+++|||+.|+++...
T Consensus 247 ---~~~~~~~SPDG~~la~~~~~------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~ 311 (435)
T PRK05137 247 ---MTFAPRFSPDGRKVVMSLSQ------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS 311 (435)
T ss_pred ---cccCcEECCCCCEEEEEEec------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCC
Confidence 124567889996 6555432 11237999998888876665544445568999999988766532
Q ss_pred -CCEEEEEEeeCC
Q psy4771 268 -SSRVHRYYLKGP 279 (337)
Q Consensus 268 -~~~I~~~~~~g~ 279 (337)
...|+++++++.
T Consensus 312 g~~~Iy~~d~~g~ 324 (435)
T PRK05137 312 GSPQLYVMNADGS 324 (435)
T ss_pred CCCeEEEEECCCC
Confidence 357888887654
No 58
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.0013 Score=63.49 Aligned_cols=134 Identities=14% Similarity=0.199 Sum_probs=82.2
Q ss_pred ceEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 115 LGIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 115 ~Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
...++.++| .|+++.... .|+.+|.++++.+.+... .
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~----~----------------------------------- 286 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNH----P----------------------------------- 286 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccC----C-----------------------------------
Confidence 357899998 565553322 499999988877665421 1
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC-
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS- 268 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~- 268 (337)
.......+++||+ |+++.... ....||++|..+++.+.+..........+++|||+.|+++....
T Consensus 287 -~~~~~~~~spDg~~i~f~s~~~------------g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~ 353 (430)
T PRK00178 287 -AIDTEPFWGKDGRTLYFTSDRG------------GKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG 353 (430)
T ss_pred -CCcCCeEECCCCCEEEEEECCC------------CCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC
Confidence 1123456888886 76664321 12378889888887665543323334568999999998887543
Q ss_pred -CEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 269 -SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 269 -~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
..|+.++++++ ..+.+.+. +.-....+.+||+
T Consensus 354 ~~~l~~~dl~tg---~~~~lt~~--~~~~~p~~spdg~ 386 (430)
T PRK00178 354 NFHVAAQDLQRG---SVRILTDT--SLDESPSVAPNGT 386 (430)
T ss_pred ceEEEEEECCCC---CEEEccCC--CCCCCceECCCCC
Confidence 36788887653 23333321 1223456778887
No 59
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.0022 Score=61.64 Aligned_cols=165 Identities=12% Similarity=0.118 Sum_probs=97.1
Q ss_pred EE-EEec--CcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC---CcEEEEEcCCCeEE
Q psy4771 75 LY-MGVD--GGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY---FGLYKVNVTTGQTE 145 (337)
Q Consensus 75 ly-~d~~--~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~---~gv~~vd~~~g~~~ 145 (337)
+| ++.. +..|+.++. ++.+.+.... +......+.||| .|+++... ..|+.+|.++++.+
T Consensus 203 i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~------------g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~ 270 (419)
T PRK04043 203 FYYTSYGERKPTLYKYNLYTGKKEKIASSQ------------GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT 270 (419)
T ss_pred EEEEEccCCCCEEEEEECCCCcEEEEecCC------------CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE
Confidence 55 5554 357888876 3443443211 112235688998 67665433 24999998888777
Q ss_pred EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeec
Q psy4771 146 QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTS 224 (337)
Q Consensus 146 ~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~ 224 (337)
++... .+ .-....++|||+ |||+.....
T Consensus 271 ~LT~~----~~------------------------------------~d~~p~~SPDG~~I~F~Sdr~g----------- 299 (419)
T PRK04043 271 QITNY----PG------------------------------------IDVNGNFVEDDKRIVFVSDRLG----------- 299 (419)
T ss_pred EcccC----CC------------------------------------ccCccEECCCCCEEEEEECCCC-----------
Confidence 66431 11 011235889996 887765421
Q ss_pred CCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC--------CEEEEEEeeCCCCCceeeeecCCCCCCC
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS--------SRVHRYYLKGPKQGKSEVFIDGLPGLPD 296 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~--------~~I~~~~~~g~~~~~~~~~~~~~~g~Pd 296 (337)
.-.||++|.++++.+.+...... + .+++|||+.|.++.... ..|+.++++++. .+.+... +.-.
T Consensus 300 -~~~Iy~~dl~~g~~~rlt~~g~~-~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~--~~~~ 371 (419)
T PRK04043 300 -YPNIFMKKLNSGSVEQVVFHGKN-N-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTAN--GVNQ 371 (419)
T ss_pred -CceEEEEECCCCCeEeCccCCCc-C-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCC--CCcC
Confidence 23799999998887655432221 2 48999999886665432 578888886542 2333332 1122
Q ss_pred ceeECCCCC-EEEEe
Q psy4771 297 NVKRDSKGN-FLVSL 310 (337)
Q Consensus 297 gi~~d~dG~-l~va~ 310 (337)
...+.+||+ ++.+.
T Consensus 372 ~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 372 FPRFSSDGGSIMFIK 386 (419)
T ss_pred CeEECCCCCEEEEEE
Confidence 366778886 44443
No 60
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.00 E-value=0.0029 Score=60.55 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=83.1
Q ss_pred cceEEECCCC-cEEEEECC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 114 PLGIKFDKNG-ALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 114 P~Gl~~d~~G-~lyVad~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
...+++.++| .|+++... ..|+.++.++++.+.+... .
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~----~---------------------------------- 277 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG----P---------------------------------- 277 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCC----C----------------------------------
Confidence 3457899998 57666433 2389999887766655421 0
Q ss_pred CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC
Q psy4771 190 KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS 268 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~ 268 (337)
.......+.+||+ |+++.... ....||.+|.++++...+..........++++||+.|+++....
T Consensus 278 --~~~~~~~~s~dg~~l~~~s~~~------------g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~ 343 (417)
T TIGR02800 278 --GIDTEPSWSPDGKSIAFTSDRG------------GSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG 343 (417)
T ss_pred --CCCCCEEECCCCCEEEEEECCC------------CCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccC
Confidence 0122446778886 65543321 12378889988777666654555566789999999998887654
Q ss_pred --CEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 269 --SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 269 --~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
.+|+.+++++. ..+.+.+. ......++.+||+
T Consensus 344 ~~~~i~~~d~~~~---~~~~l~~~--~~~~~p~~spdg~ 377 (417)
T TIGR02800 344 GGFNIAVMDLDGG---GERVLTDT--GLDESPSFAPNGR 377 (417)
T ss_pred CceEEEEEeCCCC---CeEEccCC--CCCCCceECCCCC
Confidence 47788887642 23333321 1234456777776
No 61
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.98 E-value=0.0016 Score=59.00 Aligned_cols=202 Identities=16% Similarity=0.140 Sum_probs=104.2
Q ss_pred eCCeEEEE-----ecCcEEEEEeCC-ceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcCCCe
Q psy4771 71 HKGDLYMG-----VDGGHILKLSGG-KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTGQ 143 (337)
Q Consensus 71 ~~g~ly~d-----~~~g~I~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~ 143 (337)
++..||+. ...|.|-.||.. +.+.+..|. ...-.|+-|.+.+|| .|.|++. || .-.+++|+
T Consensus 61 dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~---------s~GIGPHel~l~pDG~tLvVANG--GI-~Thpd~GR 128 (305)
T PF07433_consen 61 DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP---------SHGIGPHELLLMPDGETLVVANG--GI-ETHPDSGR 128 (305)
T ss_pred CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec---------CCCcChhhEEEcCCCCEEEEEcC--CC-ccCcccCc
Confidence 46678854 334788888874 555554442 223459999999999 9999963 22 12222222
Q ss_pred EEEEeccccccCCCCCCCCCceee-CCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeee
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTV-DSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~-~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~ 222 (337)
.+.=... .-|.-+.+ ..+|.++..-.+- ..-.-.+...++++++|.+++......-..
T Consensus 129 ~kLNl~t---------M~psL~~ld~~sG~ll~q~~Lp------~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~------ 187 (305)
T PF07433_consen 129 AKLNLDT---------MQPSLVYLDARSGALLEQVELP------PDLHQLSIRHLAVDGDGTVAFAMQYQGDPG------ 187 (305)
T ss_pred eecChhh---------cCCceEEEecCCCceeeeeecC------ccccccceeeEEecCCCcEEEEEecCCCCC------
Confidence 1111000 01121222 1222222100000 000234578999999999998876432100
Q ss_pred ecCCccEEEEcCCCCeeEEEe-------ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLI-------ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLP 295 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~-------~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~P 295 (337)
+..--|..++.. +..+.+. .--.+.-.||++.+++.+.++.-..+++..++.+.+.......+.+ -
T Consensus 188 -~~~PLva~~~~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D-----~ 260 (305)
T PF07433_consen 188 -DAPPLVALHRRG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD-----A 260 (305)
T ss_pred -ccCCeEEEEcCC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc-----e
Confidence 000122333321 1121111 1123567899999999999999999999999865432222111111 2
Q ss_pred CceeECCCCCEEEEecCC
Q psy4771 296 DNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 296 dgi~~d~dG~l~va~~~~ 313 (337)
-|++...+| +.++...+
T Consensus 261 cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 261 CGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred eeeeecCCc-eEEeCCCc
Confidence 356666666 55555555
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.95 E-value=0.0055 Score=53.53 Aligned_cols=180 Identities=16% Similarity=0.145 Sum_probs=104.4
Q ss_pred ccEEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEEC-CCcEEEEEcCC
Q psy4771 65 PEAVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADA-YFGLYKVNVTT 141 (337)
Q Consensus 65 P~~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~-~~gv~~vd~~~ 141 (337)
..++.+ .++.++ ++..++.|..|+..+......+. ........+.+++++.++++.. ...+..+|..+
T Consensus 96 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 96 VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---------GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec---------cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 344555 344444 55558888888764322222221 1223467899999887776654 34477788764
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFE 220 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~ 220 (337)
++...... . .-.....+++.++|+ ++++..
T Consensus 167 ~~~~~~~~------~---------------------------------~~~~i~~~~~~~~~~~l~~~~~---------- 197 (289)
T cd00200 167 GKCVATLT------G---------------------------------HTGEVNSVAFSPDGEKLLSSSS---------- 197 (289)
T ss_pred cccceeEe------c---------------------------------CccccceEEECCCcCEEEEecC----------
Confidence 44322221 0 112467888999885 554443
Q ss_pred eeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCcee
Q psy4771 221 GLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVK 299 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~ 299 (337)
+|.+..+|..+++..... ........+++++++. ++++....+.|..+++.... ....+. ........++
T Consensus 198 -----~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~--~~~~~~-~~~~~i~~~~ 268 (289)
T cd00200 198 -----DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGE--CVQTLS-GHTNSVTSLA 268 (289)
T ss_pred -----CCcEEEEECCCCceecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCce--eEEEcc-ccCCcEEEEE
Confidence 347777887665543333 2333678899999864 55555557789988876321 112222 2233467889
Q ss_pred ECCCCCEEEEec
Q psy4771 300 RDSKGNFLVSLV 311 (337)
Q Consensus 300 ~d~dG~l~va~~ 311 (337)
++++|+++++..
T Consensus 269 ~~~~~~~l~~~~ 280 (289)
T cd00200 269 WSPDGKRLASGS 280 (289)
T ss_pred ECCCCCEEEEec
Confidence 999987665543
No 63
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.93 E-value=0.0036 Score=60.48 Aligned_cols=136 Identities=13% Similarity=0.095 Sum_probs=83.3
Q ss_pred cceEEECCCC-cEEEEECC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 114 PLGIKFDKNG-ALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 114 P~Gl~~d~~G-~lyVad~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
-...+++||| .|.++... ..++.++.++|+.+.+.. ..+
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~----~~~--------------------------------- 243 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS----FPR--------------------------------- 243 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC----CCC---------------------------------
Confidence 4478999999 45433221 238888888777666543 111
Q ss_pred CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEE-eCC
Q psy4771 190 KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVA-ETM 267 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva-~~~ 267 (337)
....++++|||+ |+++..... ...||.+|.++++.+.+..+-......+++|||+.|+++ +..
T Consensus 244 ---~~~~~~~SPDG~~La~~~~~~g------------~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~ 308 (429)
T PRK03629 244 ---HNGAPAFSPDGSKLAFALSKTG------------SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA 308 (429)
T ss_pred ---CcCCeEECCCCCEEEEEEcCCC------------CcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC
Confidence 123578999996 776543211 126899999888877666554455678999999987554 432
Q ss_pred -CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 268 -SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 268 -~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
..+|++++++++. .+.+.. ..+.....++.+||+
T Consensus 309 g~~~Iy~~d~~~g~---~~~lt~-~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 309 GRPQVYKVNINGGA---PQRITW-EGSQNQDADVSSDGK 343 (429)
T ss_pred CCceEEEEECCCCC---eEEeec-CCCCccCEEECCCCC
Confidence 3478888876542 222222 112234566777776
No 64
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.87 E-value=0.004 Score=60.09 Aligned_cols=132 Identities=16% Similarity=0.244 Sum_probs=78.8
Q ss_pred eEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 116 GIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 116 Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
.+++.||| .|+++.... .|+.+|.++++.+.+... .
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~----------------------------------------~ 291 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSG----------------------------------------A 291 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccC----------------------------------------C
Confidence 57999999 466553222 388889887776655420 1
Q ss_pred CCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 192 QIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 192 ~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
......++++||+ |+++..... .-.||.++..++..+.+ .... ...+++|||+.|+++.. ..
T Consensus 292 ~~~~~~~wSpDG~~i~f~s~~~g------------~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~--~~ 354 (429)
T PRK01742 292 GNNTEPSWSPDGQSILFTSDRSG------------SPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING--DN 354 (429)
T ss_pred CCcCCEEECCCCCEEEEEECCCC------------CceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC--CC
Confidence 1245678899997 666543211 12788888776655443 2221 34689999999988764 56
Q ss_pred EEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEE
Q psy4771 271 VHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 309 (337)
Q Consensus 271 I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va 309 (337)
+.++++.++. .+.+.... .-....+.+||+..+.
T Consensus 355 i~~~Dl~~g~---~~~lt~~~--~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 355 VVKQDLTSGS---TEVLSSTF--LDESPSISPNGIMIIY 388 (429)
T ss_pred EEEEECCCCC---eEEecCCC--CCCCceECCCCCEEEE
Confidence 8888875432 22222211 1235567778864333
No 65
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.0018 Score=60.89 Aligned_cols=123 Identities=16% Similarity=0.145 Sum_probs=71.7
Q ss_pred CCCCCccEEEcCC-CcEEEEcCCCCc---cC------------ceeeee-ecCCccEEEEcCC--CC--eeEEEeccccc
Q psy4771 190 KPQIPNSVTVDSD-GMVYWSDSSTKY---KS------------GLFEGL-TSGSGRLIQYNPK--TK--KNKVLIANLHF 248 (337)
Q Consensus 190 ~~~~pn~v~vd~~-G~lyvtd~~~~~---~~------------~~~~~~-~~~~G~v~~~d~~--~~--~~~~~~~~~~~ 248 (337)
.+..|.++++++. |.||+++...+. .+ |.+... ...+|+... ++. .+ ..........-
T Consensus 237 G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~-~~~~~~~~~~p~~~~~~h~A 315 (399)
T COG2133 237 GHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIP-DGTVVAGAIQPVYTWAPHIA 315 (399)
T ss_pred ccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccC-CCcccccccCCceeeccccc
Confidence 5778899999996 899999998721 11 111110 001111000 000 00 00001112235
Q ss_pred eeeEEEccCC------CEEEEEeCCCCEEEEEEeeCCCCCceeeeec-CCCCCCCceeECCCCCEEEEecCC
Q psy4771 249 ANGVELSADE------SFVIVAETMSSRVHRYYLKGPKQGKSEVFID-GLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 249 p~gia~~~dg------~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~-~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
|.||+|.... +.++|+..++..+.+.+.+|...-..+.|.. ...|.|-++++.+||.|+|+...+
T Consensus 316 psGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~ 387 (399)
T COG2133 316 PSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQG 387 (399)
T ss_pred cceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCC
Confidence 7899998431 3599999988888887777652112222322 234789999999999999998664
No 66
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.79 E-value=0.002 Score=60.71 Aligned_cols=80 Identities=10% Similarity=0.107 Sum_probs=53.4
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCc----cCce--e-eeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEE
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKY----KSGL--F-EGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIV 263 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~----~~~~--~-~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv 263 (337)
..+-..|++++||+||++--+..- .+.. . .+.......++..|+.+...++...++.+|.|++++|....||+
T Consensus 176 ~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~ 255 (399)
T COG2133 176 HHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWT 255 (399)
T ss_pred CcCcccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEE
Confidence 456678999999999998765411 0000 0 00111222455556665666677888999999999998557999
Q ss_pred EeCCCCE
Q psy4771 264 AETMSSR 270 (337)
Q Consensus 264 a~~~~~~ 270 (337)
+|.+...
T Consensus 256 ~e~g~d~ 262 (399)
T COG2133 256 TEHGPDA 262 (399)
T ss_pred EecCCCc
Confidence 9988733
No 67
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.78 E-value=0.0062 Score=59.17 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=82.9
Q ss_pred ceEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 115 LGIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 115 ~Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
....++||| .|+++.... .|+.+|.++++.+.+.. ..+
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~----~~g---------------------------------- 262 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS----FPG---------------------------------- 262 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC----CCC----------------------------------
Confidence 467889998 455443222 38999988887665542 111
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM-- 267 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~-- 267 (337)
.....++++||+ |+++.... ....||.+|.++++.+.+..........+++|||++|+++...
T Consensus 263 --~~~~~~wSPDG~~La~~~~~~------------g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g 328 (448)
T PRK04792 263 --INGAPRFSPDGKKLALVLSKD------------GQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG 328 (448)
T ss_pred --CcCCeeECCCCCEEEEEEeCC------------CCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCC
Confidence 123568899987 76653321 1236999999888877665544455668899999988776532
Q ss_pred CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 268 SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 268 ~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
...|++++++++.. ..+..++ ....+.++.+||+
T Consensus 329 ~~~Iy~~dl~~g~~--~~Lt~~g--~~~~~~~~SpDG~ 362 (448)
T PRK04792 329 KPQIYRVNLASGKV--SRLTFEG--EQNLGGSITPDGR 362 (448)
T ss_pred CceEEEEECCCCCE--EEEecCC--CCCcCeeECCCCC
Confidence 35788888765422 1111121 1233457778886
No 68
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.72 E-value=0.0087 Score=57.74 Aligned_cols=135 Identities=13% Similarity=0.161 Sum_probs=79.2
Q ss_pred ceEEECCCC-cEEEEECCC---cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 115 LGIKFDKNG-ALHVADAYF---GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 115 ~Gl~~d~~G-~lyVad~~~---gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
...++.|+| .|+++.... .|+.+|..+|+...+.. ..|
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~----~~g---------------------------------- 240 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN----FKG---------------------------------- 240 (427)
T ss_pred ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec----CCC----------------------------------
Confidence 367889998 555543222 38889988887666542 111
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC--C
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET--M 267 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~--~ 267 (337)
.....++++||+ |+++-... ..-.||.+|.++++.+.+......-...+++|||++|+++.. +
T Consensus 241 --~~~~~~~SPDG~~la~~~~~~------------g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g 306 (427)
T PRK02889 241 --SNSAPAWSPDGRTLAVALSRD------------GNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG 306 (427)
T ss_pred --CccceEECCCCCEEEEEEccC------------CCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC
Confidence 124678899986 66553321 123788888877776655443333345789999998876543 3
Q ss_pred CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 268 SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 268 ~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
...|++++++++.. ..+... .++....++.+||+
T Consensus 307 ~~~Iy~~~~~~g~~--~~lt~~--g~~~~~~~~SpDG~ 340 (427)
T PRK02889 307 APQIYRMPASGGAA--QRVTFT--GSYNTSPRISPDGK 340 (427)
T ss_pred CcEEEEEECCCCce--EEEecC--CCCcCceEECCCCC
Confidence 45677777654321 122111 12233456777776
No 69
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.72 E-value=0.012 Score=56.78 Aligned_cols=135 Identities=12% Similarity=0.185 Sum_probs=80.9
Q ss_pred ceEEECCCC-cEEE-EECC--CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 115 LGIKFDKNG-ALHV-ADAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 115 ~Gl~~d~~G-~lyV-ad~~--~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
....++++| .|++ +... ..|+.++.++|+.+.+.. ..|
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~----~~g---------------------------------- 243 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN----FEG---------------------------------- 243 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC----CCC----------------------------------
Confidence 567889998 5544 4322 248889998887766542 111
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM-- 267 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~-- 267 (337)
.....++++||+ |+++.... ....||.+|.++++.+.+..........+++|||+.|+++...
T Consensus 244 --~~~~~~~SpDG~~la~~~~~~------------g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g 309 (430)
T PRK00178 244 --LNGAPAWSPDGSKLAFVLSKD------------GNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG 309 (430)
T ss_pred --CcCCeEECCCCCEEEEEEccC------------CCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCC
Confidence 123577889986 66554321 1237899999888776655443344567899999988766432
Q ss_pred CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 268 SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 268 ~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
...|++++++++. .+.+... .......++++||+
T Consensus 310 ~~~iy~~d~~~g~---~~~lt~~-~~~~~~~~~Spdg~ 343 (430)
T PRK00178 310 KPQIYKVNVNGGR---AERVTFV-GNYNARPRLSADGK 343 (430)
T ss_pred CceEEEEECCCCC---EEEeecC-CCCccceEECCCCC
Confidence 3578888876542 2222111 11223456677775
No 70
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.68 E-value=0.029 Score=54.17 Aligned_cols=165 Identities=9% Similarity=0.089 Sum_probs=90.7
Q ss_pred EEECCCC-c--E-EEEECC--CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc---c--cc--ceeee-
Q psy4771 117 IKFDKNG-A--L-HVADAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---Q--TE--QLISM- 182 (337)
Q Consensus 117 l~~d~~G-~--l-yVad~~--~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~--~~--~v~~~- 182 (337)
-++.||| . + |++... ..|+..+.++|+.+.+.. ..|. ....+.++||+.+ . .+ .+...
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~----~~g~----~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA----LQGN----QLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec----CCCC----ccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 4888998 3 2 455432 249999999998777764 2221 2235678888766 1 11 22221
Q ss_pred -ccc---------cCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCC--CCeeEEEeccccce
Q psy4771 183 -DTE---------IDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK--TKKNKVLIANLHFA 249 (337)
Q Consensus 183 -~~~---------~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~--~~~~~~~~~~~~~p 249 (337)
+.. +...........++++||+ |+++..... .-.||.++.+ +++.+.+.......
T Consensus 262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g------------~~~ly~~~~~~~g~~~~~lt~~~~~~ 329 (428)
T PRK01029 262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG------------RPRIYIMQIDPEGQSPRLLTKKYRNS 329 (428)
T ss_pred eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC------------CceEEEEECcccccceEEeccCCCCc
Confidence 100 0000112234568899997 665543211 1257776653 23333333332334
Q ss_pred eeEEEccCCCEEEEEeCC--CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 250 NGVELSADESFVIVAETM--SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 250 ~gia~~~dg~~lyva~~~--~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
...+++|||+.|+++... ..+|+++++++++ .+.+... ++...+....+||+
T Consensus 330 ~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~---~~~Lt~~-~~~~~~p~wSpDG~ 383 (428)
T PRK01029 330 SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR---DYQLTTS-PENKESPSWAIDSL 383 (428)
T ss_pred cceeECCCCCEEEEEEcCCCCcEEEEEECCCCC---eEEccCC-CCCccceEECCCCC
Confidence 567899999988776543 3579999887542 2333322 22345667777776
No 71
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.68 E-value=0.0057 Score=59.14 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=82.1
Q ss_pred ceEEECCCC-cEEEEECC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 115 LGIKFDKNG-ALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 115 ~Gl~~d~~G-~lyVad~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
.+.+++++| .|+++... ..|+.+|.++++.+.+.. ..+
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~----~~g---------------------------------- 248 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS----FRG---------------------------------- 248 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc----CCC----------------------------------
Confidence 467888998 46555422 238888988777665542 111
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM-- 267 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~-- 267 (337)
.....++++||+ |+++.... ....||.+|.++++.+.+..........++++||+.|+++...
T Consensus 249 --~~~~~~~SpDG~~l~~~~s~~------------g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g 314 (433)
T PRK04922 249 --INGAPSFSPDGRRLALTLSRD------------GNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG 314 (433)
T ss_pred --CccCceECCCCCEEEEEEeCC------------CCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCC
Confidence 123568899986 66554321 1237999999888876655443344567999999988766432
Q ss_pred CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 268 SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 268 ~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
...|++++++++. .+.+.. ...+....++.+||+
T Consensus 315 ~~~iy~~dl~~g~---~~~lt~-~g~~~~~~~~SpDG~ 348 (433)
T PRK04922 315 RPQIYRVAASGGS---AERLTF-QGNYNARASVSPDGK 348 (433)
T ss_pred CceEEEEECCCCC---eEEeec-CCCCccCEEECCCCC
Confidence 3468888775532 222211 112334567778876
No 72
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.67 E-value=0.036 Score=49.29 Aligned_cols=174 Identities=20% Similarity=0.121 Sum_probs=100.3
Q ss_pred ccEEEe-eCCeEE-EEecCc--EEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEE
Q psy4771 65 PEAVVK-HKGDLY-MGVDGG--HILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKV 137 (337)
Q Consensus 65 P~~i~~-~~g~ly-~d~~~g--~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~v 137 (337)
-+++.+ ++|.+| +.-..| +|.+++. ++......+. ..-.-.||++-.+ +||.-.+..+ .+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~----------~~~FgEGit~~~d-~l~qLTWk~~~~f~y 115 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP----------PRYFGEGITILGD-KLYQLTWKEGTGFVY 115 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T----------TT--EEEEEEETT-EEEEEESSSSEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC----------ccccceeEEEECC-EEEEEEecCCeEEEE
Confidence 346666 789999 444444 6778876 4443333332 2234569998754 8999987766 7888
Q ss_pred EcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCc
Q psy4771 138 NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSG 217 (337)
Q Consensus 138 d~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~ 217 (337)
|+++-+...-.. ..| .--|++-|. ..+|+||.+.
T Consensus 116 d~~tl~~~~~~~----y~~------------------------------------EGWGLt~dg-~~Li~SDGS~----- 149 (264)
T PF05096_consen 116 DPNTLKKIGTFP----YPG------------------------------------EGWGLTSDG-KRLIMSDGSS----- 149 (264)
T ss_dssp ETTTTEEEEEEE-----SS------------------------------------S--EEEECS-SCEEEE-SSS-----
T ss_pred ccccceEEEEEe----cCC------------------------------------cceEEEcCC-CEEEEECCcc-----
Confidence 987654332221 111 235777442 3699888763
Q ss_pred eeeeeecCCccEEEEcCCCCeeEE----Eecc--ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec--
Q psy4771 218 LFEGLTSGSGRLIQYNPKTKKNKV----LIAN--LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID-- 289 (337)
Q Consensus 218 ~~~~~~~~~G~v~~~d~~~~~~~~----~~~~--~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~-- 289 (337)
+|+.+||++-+... -..+ ...-|-+.+- +| .||..-..+++|.++++..+ .+.-.++
T Consensus 150 ----------~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~tG---~V~~~iDls 214 (264)
T PF05096_consen 150 ----------RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPETG---KVVGWIDLS 214 (264)
T ss_dssp ----------EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT----BEEEEEE-H
T ss_pred ----------ceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCCC---eEEEEEEhh
Confidence 77888887643221 1111 3455667665 56 79999999999999998643 2222221
Q ss_pred ---------CC----CCCCCceeECCCC-CEEEEe
Q psy4771 290 ---------GL----PGLPDNVKRDSKG-NFLVSL 310 (337)
Q Consensus 290 ---------~~----~g~Pdgi~~d~dG-~l~va~ 310 (337)
.. ...-.|||.|+++ ++||+-
T Consensus 215 ~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 215 GLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp HHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred HhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 00 1245799999775 599875
No 73
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.66 E-value=0.014 Score=56.15 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=80.8
Q ss_pred eEEECCCCc--EEEEECC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 116 GIKFDKNGA--LHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 116 Gl~~d~~G~--lyVad~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
...+.++|+ +|++... ..|+.+|..+|+.+.+.. ..|
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~----~~g---------------------------------- 233 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS----SQG---------------------------------- 233 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec----CCC----------------------------------
Confidence 577888884 6665433 238999998888877763 111
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM-- 267 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~-- 267 (337)
......+++||+ +.++... ..+..||.+|.++++.+.+...-..-..-.++|||++||++...
T Consensus 234 --~~~~~~~SPDG~~la~~~~~------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g 299 (419)
T PRK04043 234 --MLVVSDVSKDGSKLLLTMAP------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG 299 (419)
T ss_pred --cEEeeEECCCCCEEEEEEcc------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC
Confidence 112345788885 6665543 12458999998888776654332222334799999988877633
Q ss_pred CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 268 SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 268 ~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
...|++++++++... ++... +. ....+++||+
T Consensus 300 ~~~Iy~~dl~~g~~~--rlt~~---g~-~~~~~SPDG~ 331 (419)
T PRK04043 300 YPNIFMKKLNSGSVE--QVVFH---GK-NNSSVSTYKN 331 (419)
T ss_pred CceEEEEECCCCCeE--eCccC---CC-cCceECCCCC
Confidence 347999888754321 22222 11 1346778887
No 74
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.61 E-value=0.02 Score=54.71 Aligned_cols=135 Identities=17% Similarity=0.178 Sum_probs=80.3
Q ss_pred ceEEECCCC-cEEEEECC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 115 LGIKFDKNG-ALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 115 ~Gl~~d~~G-~lyVad~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
...+++++| .|+++... ..|+.+|.++++...+.. ..+
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~----~~~---------------------------------- 234 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS----FPG---------------------------------- 234 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec----CCC----------------------------------
Confidence 356788998 45555432 238888988776655542 111
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC--C
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET--M 267 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~--~ 267 (337)
....+++++||+ |+++.... ....||.+|..+++.+.+..........++++||++|+++.. +
T Consensus 235 --~~~~~~~spDg~~l~~~~~~~------------~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g 300 (417)
T TIGR02800 235 --MNGAPAFSPDGSKLAVSLSKD------------GNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG 300 (417)
T ss_pred --CccceEECCCCCEEEEEECCC------------CCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC
Confidence 123477889986 76654321 123788899887776655443323345688999998866543 2
Q ss_pred CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 268 SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 268 ~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
...|+++++++.. ...+.. ........+++++|+
T Consensus 301 ~~~iy~~d~~~~~---~~~l~~-~~~~~~~~~~spdg~ 334 (417)
T TIGR02800 301 SPQIYMMDADGGE---VRRLTF-RGGYNASPSWSPDGD 334 (417)
T ss_pred CceEEEEECCCCC---EEEeec-CCCCccCeEECCCCC
Confidence 3478888876532 222221 112345667777776
No 75
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.60 E-value=0.0054 Score=55.59 Aligned_cols=110 Identities=19% Similarity=0.147 Sum_probs=73.8
Q ss_pred cCCcceEEECCCCcEEEEEC-CCc--EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccC
Q psy4771 111 CGRPLGIKFDKNGALHVADA-YFG--LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187 (337)
Q Consensus 111 ~~~P~Gl~~d~~G~lyVad~-~~g--v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~ 187 (337)
..|.+|++.++.....|+-+ .-| .+.+|..+|+....... .++.
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a---~~gR------------------------------ 50 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA---PPGR------------------------------ 50 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC---CCCC------------------------------
Confidence 46778999999653333322 223 88899998887765542 1221
Q ss_pred CCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCC--eeEEEeccccceeeEEEccCCCEEEEE
Q psy4771 188 GAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTK--KNKVLIANLHFANGVELSADESFVIVA 264 (337)
Q Consensus 188 ~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~--~~~~~~~~~~~p~gia~~~dg~~lyva 264 (337)
.+--..++++||+ ||.|+... ....|.|-+||...+ .+.....+.-.|..+.+.|||++|.|+
T Consensus 51 ----HFyGHg~fs~dG~~LytTEnd~----------~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 51 ----HFYGHGVFSPDGRLLYTTENDY----------ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred ----EEecCEEEcCCCCEEEEecccc----------CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 1223566889997 77777653 346788889998733 223334455679999999999999999
Q ss_pred eCC
Q psy4771 265 ETM 267 (337)
Q Consensus 265 ~~~ 267 (337)
+.+
T Consensus 117 NGG 119 (305)
T PF07433_consen 117 NGG 119 (305)
T ss_pred cCC
Confidence 965
No 76
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.59 E-value=0.015 Score=56.10 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=71.0
Q ss_pred cceEEECCCC-cEEEEECC---CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 114 PLGIKFDKNG-ALHVADAY---FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 114 P~Gl~~d~~G-~lyVad~~---~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
-...+++|+| .|+++... ..|+.+|.++++.+.+.. ..+
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~----~~g--------------------------------- 248 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS----FRG--------------------------------- 248 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec----CCC---------------------------------
Confidence 4578999999 45444322 238888988776655542 111
Q ss_pred CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC-
Q psy4771 190 KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM- 267 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~- 267 (337)
.-..++++|||+ |+++..... .-.||.+|.++++.+.+..+.......+++|||+.|+++...
T Consensus 249 ---~~~~~~wSPDG~~La~~~~~~g------------~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~ 313 (429)
T PRK01742 249 ---HNGAPAFSPDGSRLAFASSKDG------------VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRS 313 (429)
T ss_pred ---ccCceeECCCCCEEEEEEecCC------------cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCC
Confidence 123578999997 665532211 125888888877776665544445678999999988776533
Q ss_pred -CCEEEEEEeeC
Q psy4771 268 -SSRVHRYYLKG 278 (337)
Q Consensus 268 -~~~I~~~~~~g 278 (337)
..+|+.++.++
T Consensus 314 g~~~I~~~~~~~ 325 (429)
T PRK01742 314 GSPQVYRMSASG 325 (429)
T ss_pred CCceEEEEECCC
Confidence 34666666544
No 77
>KOG0315|consensus
Probab=97.58 E-value=0.028 Score=48.97 Aligned_cols=199 Identities=14% Similarity=0.072 Sum_probs=113.4
Q ss_pred cEEEe--eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcCCC
Q psy4771 66 EAVVK--HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTG 142 (337)
Q Consensus 66 ~~i~~--~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g 142 (337)
..+.+ ++.-+|++..+|.+-.||.-....-..+ ....-.+.+...|+. +|+++|....|+..|....
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~----------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY----------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhc----------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 34444 3445789999997777765222111111 111234688888884 9999996556888887644
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeee
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~ 222 (337)
.-....- |+ ...+...+++++||...++-..
T Consensus 157 ~c~~~li------------Pe--------------------------~~~~i~sl~v~~dgsml~a~nn----------- 187 (311)
T KOG0315|consen 157 SCTHELI------------PE--------------------------DDTSIQSLTVMPDGSMLAAANN----------- 187 (311)
T ss_pred ccccccC------------CC--------------------------CCcceeeEEEcCCCcEEEEecC-----------
Confidence 3222211 11 2345678899999875544332
Q ss_pred ecCCccEEEEcCCCCeeEEEe-------ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLI-------ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLP 295 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~-------~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~P 295 (337)
.|+.|.++.-+++....+ ..-...--+.+|||++ ..++.+...++..+..++- -..+...++....-
T Consensus 188 ---kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWv 261 (311)
T KOG0315|consen 188 ---KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWV 261 (311)
T ss_pred ---CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCc--eeeEEEeecCCceE
Confidence 456666554443321111 1112334567899997 5555556678888887764 22333344334567
Q ss_pred CceeECCCCCEEEEecCC-CCCch---hhccccCCCcc
Q psy4771 296 DNVKRDSKGNFLVSLVCP-VEQPS---EQAGNIRDPAG 329 (337)
Q Consensus 296 dgi~~d~dG~l~va~~~~-~~~p~---~~~~~~~~p~~ 329 (337)
.+-++..||.+.|+.... -.++| ..+-+..|+.-
T Consensus 262 Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 262 WDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred EeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 889999999877776544 22332 34444555443
No 78
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.57 E-value=0.013 Score=58.00 Aligned_cols=204 Identities=11% Similarity=0.101 Sum_probs=114.3
Q ss_pred eEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEEC--C--CcEEEEEcCCCeEEEE
Q psy4771 74 DLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADA--Y--FGLYKVNVTTGQTEQL 147 (337)
Q Consensus 74 ~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~--~--~gv~~vd~~~g~~~~l 147 (337)
.++ ++-..+.+..+|..+.+.... ....++|..+.++++| .+|++.. . ..+..++.........
T Consensus 206 ~l~~~~ey~~~vSvID~etmeV~~q----------V~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 206 DLDDPKKYRSLFTAVDAETMEVAWQ----------VMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred EeecccceeEEEEEEECccceEEEE----------EEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 455 555556667777654332211 1345689999999998 6777741 1 2266665543333333
Q ss_pred eccccccCCCCCCCCCceeeCCCCCcc--cccceeeecccc-----CC-----CCCCCCccEEEcCCCc-EEEEcCCCCc
Q psy4771 148 ISMDTEIDGAKPQIPNSVTVDSDGQTG--QTEQLISMDTEI-----DG-----AKPQIPNSVTVDSDGM-VYWSDSSTKY 214 (337)
Q Consensus 148 ~~~~~~~~g~~~~~P~~v~~~~~g~~~--~~~~v~~~~~~~-----~~-----~~~~~pn~v~vd~~G~-lyvtd~~~~~ 214 (337)
... .+ .-++.++|+.. ..+.|..++... .. .-...|.+++++|||+ +|++...+.
T Consensus 276 fni----~~-------iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~- 343 (635)
T PRK02888 276 FNI----AR-------IEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSP- 343 (635)
T ss_pred Ech----HH-------HHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCC-
Confidence 221 10 11223345443 334455555433 01 0357899999999997 888876543
Q ss_pred cCceeeeeecCCccEEEEcCCCCee---------EEEe---ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC---
Q psy4771 215 KSGLFEGLTSGSGRLIQYNPKTKKN---------KVLI---ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP--- 279 (337)
Q Consensus 215 ~~~~~~~~~~~~G~v~~~d~~~~~~---------~~~~---~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~--- 279 (337)
.+-.+|.++.+. ..+. .-...|--.+|+.+|+ .|++-.-.+.|.+.+++..
T Consensus 344 -------------tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~ 409 (635)
T PRK02888 344 -------------TVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRA 409 (635)
T ss_pred -------------cEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHHHHHH
Confidence 444444433210 0111 1134688899999984 9999999999999998641
Q ss_pred CCCc-eeeeecC-----CCC---CCCceeECCCCCEEEEecCC
Q psy4771 280 KQGK-SEVFIDG-----LPG---LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 280 ~~~~-~~~~~~~-----~~g---~Pdgi~~d~dG~l~va~~~~ 313 (337)
..|. ...+.+. .|| .+.|=..++||+..++...-
T Consensus 410 ~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~ 452 (635)
T PRK02888 410 YKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKF 452 (635)
T ss_pred hccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcccc
Confidence 0011 1111111 122 24566678999988888644
No 79
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.57 E-value=0.0017 Score=63.94 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=49.0
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCcc-----------EEEEcCCCCeeEEEecc--ccceeeEEEcc
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGR-----------LIQYNPKTKKNKVLIAN--LHFANGVELSA 256 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~-----------v~~~d~~~~~~~~~~~~--~~~p~gia~~~ 256 (337)
.+..|..|++|++|+||+++........+.. ....|. ++..++.+++++.+... -.-..|++++|
T Consensus 434 ~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g--~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp 511 (524)
T PF05787_consen 434 GFASPDNLAFDPDGNLWIQEDGGGSNNNLPG--VTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSP 511 (524)
T ss_pred CcCCCCceEECCCCCEEEEeCCCCCCccccc--ccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECC
Confidence 6889999999999999997765432111000 111222 55567777777665543 23457999999
Q ss_pred CCCEEEEEe
Q psy4771 257 DESFVIVAE 265 (337)
Q Consensus 257 dg~~lyva~ 265 (337)
|+++|||.-
T Consensus 512 Dg~tlFvni 520 (524)
T PF05787_consen 512 DGRTLFVNI 520 (524)
T ss_pred CCCEEEEEE
Confidence 999999854
No 80
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.54 E-value=0.025 Score=54.58 Aligned_cols=174 Identities=17% Similarity=0.206 Sum_probs=96.1
Q ss_pred EEEEecCc--EEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCC---cEEE--EEcCC---
Q psy4771 75 LYMGVDGG--HILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYF---GLYK--VNVTT--- 141 (337)
Q Consensus 75 ly~d~~~g--~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~---gv~~--vd~~~--- 141 (337)
+|++..++ +|+.++. ++.+.+..+. +.....++.||| .|.++.... .++. ++.++
T Consensus 202 ~y~S~~~g~~~I~~~~l~~g~~~~lt~~~------------g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 202 LYVSYKLGVPKIFLGSLENPAGKKILALQ------------GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred EEEEccCCCceEEEEECCCCCceEeecCC------------CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 45655543 5777765 3333443221 223356899999 665554221 3444 34443
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcc---c--cc--ceeeeccccCC---C----CCCCCccEEEcCCCc-EE
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---Q--TE--QLISMDTEIDG---A----KPQIPNSVTVDSDGM-VY 206 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~--~~--~v~~~~~~~~~---~----~~~~pn~v~vd~~G~-ly 206 (337)
++.+.+... ..+ .....+.++||+.+ + .+ .+..+.....+ . ........+++|||+ |+
T Consensus 270 g~~~~lt~~---~~~----~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~La 342 (428)
T PRK01029 270 GKPRRLLNE---AFG----TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIA 342 (428)
T ss_pred CcceEeecC---CCC----CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEE
Confidence 344444421 111 12345778888855 1 11 34443321111 0 112234677888886 65
Q ss_pred EEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC--CCCEEEEEEeeCC
Q psy4771 207 WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET--MSSRVHRYYLKGP 279 (337)
Q Consensus 207 vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~--~~~~I~~~~~~g~ 279 (337)
++.... ....|+.+|.++++.+.+..+.......+++|||+.|+++.. +...|+.++++++
T Consensus 343 f~~~~~------------g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 343 FCSVIK------------GVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred EEEcCC------------CCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 554321 123799999999988776654334567899999999887644 3467888888754
No 81
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.51 E-value=0.055 Score=48.80 Aligned_cols=207 Identities=13% Similarity=0.131 Sum_probs=116.6
Q ss_pred CcccCccEEEe-eCCeEE-EEecCcEEEEEeCC------ceeE-EEecCccccCccccCccCCcceEEECCCCcEEEEEC
Q psy4771 60 NEIHGPEAVVK-HKGDLY-MGVDGGHILKLSGG------KLVP-VVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADA 130 (337)
Q Consensus 60 g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~~------~~~~-~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~ 130 (337)
-.+..|.+|++ ..+.+| +|...+....|+.. .... +..+.... .......|.|+.+.......|+..
T Consensus 20 p~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~----~~~~~~~PTGiVfN~~~~F~vt~~ 95 (336)
T TIGR03118 20 PGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPP----PLAAEGTPTGQVFNGSDTFVVSGE 95 (336)
T ss_pred ccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCC----CCCCCCCccEEEEeCCCceEEcCC
Confidence 34668899999 588999 77777777777653 1111 11221100 012235699999986655445542
Q ss_pred C-C--cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCC--CC--------------Ccc-----cccceeeecccc
Q psy4771 131 Y-F--GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS--DG--------------QTG-----QTEQLISMDTEI 186 (337)
Q Consensus 131 ~-~--gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~--~g--------------~~~-----~~~~v~~~~~~~ 186 (337)
. . ..+.+..++|.+.-.... -+.....+..+++|. .| +.+ ..++|-+++..+
T Consensus 96 g~~~~a~Fif~tEdGTisaW~p~----v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 96 GITGPSRFLFVTEDGTLSGWAPA----LGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred CcccceeEEEEeCCceEEeecCc----CCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 2 1 245666667776655421 000000012233321 12 222 335555555444
Q ss_pred CCCC------------CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec--cccceeeE
Q psy4771 187 DGAK------------PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA--NLHFANGV 252 (337)
Q Consensus 187 ~~~~------------~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--~~~~p~gi 252 (337)
.... --.|-+|..- .|+||||-...+-. ...+......|.|-+||+++..++++.. .|..|.||
T Consensus 172 ~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~-~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~ 249 (336)
T TIGR03118 172 RPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDAD-RNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGL 249 (336)
T ss_pred ccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCc-ccccccCCCcceEEEEcCCCcEEEEeccCCcccCCcee
Confidence 3211 1134455332 46899886554321 1122334566899999998766666654 37899999
Q ss_pred EEcc------CCCEEEEEeCCCCEEEEEEee
Q psy4771 253 ELSA------DESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 253 a~~~------dg~~lyva~~~~~~I~~~~~~ 277 (337)
++.| .| .|+|.+.+.++|-.||..
T Consensus 250 a~APa~FG~~sg-~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 250 AIAPESFGSLSG-ALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred eeChhhhCCCCC-CeEEeecCCceeEEecCC
Confidence 9975 34 599999999999999985
No 82
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0027 Score=53.83 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=66.6
Q ss_pred CCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
+.-+|++.|.+ +|+.+|...-+..-||++-....-+.. ..+ +.+.
T Consensus 131 GeGWgLt~d~~-~LimsdGsatL~frdP~tfa~~~~v~V--T~~--------------------------------g~pv 175 (262)
T COG3823 131 GEGWGLTSDDK-NLIMSDGSATLQFRDPKTFAELDTVQV--TDD--------------------------------GVPV 175 (262)
T ss_pred CcceeeecCCc-ceEeeCCceEEEecCHHHhhhcceEEE--EEC--------------------------------Ceec
Confidence 34468887655 688887544477777764221111000 011 2244
Q ss_pred CCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec-------------cccceeeEEEccCC
Q psy4771 192 QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-------------NLHFANGVELSADE 258 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-------------~~~~p~gia~~~dg 258 (337)
...|-+..= ||.+|..-+.. -+|.|++|++|++....+ ....+||||..+++
T Consensus 176 ~~LNELE~V-dG~lyANVw~t--------------~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~ 240 (262)
T COG3823 176 SKLNELEWV-DGELYANVWQT--------------TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQ 240 (262)
T ss_pred ccccceeee-ccEEEEeeeee--------------cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcC
Confidence 445555432 46666443332 288999999998765442 23468999999999
Q ss_pred CEEEEEeCCCCEEEEEE
Q psy4771 259 SFVIVAETMSSRVHRYY 275 (337)
Q Consensus 259 ~~lyva~~~~~~I~~~~ 275 (337)
+++|++-..=..++.+.
T Consensus 241 ~r~~iTGK~wp~lfEVk 257 (262)
T COG3823 241 DRFLITGKLWPLLFEVK 257 (262)
T ss_pred CeEEEecCcCceeEEEE
Confidence 89999764433444433
No 83
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.45 E-value=0.00023 Score=40.53 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=20.7
Q ss_pred CCcceEEECCCCcEEEEECCCc-EEE
Q psy4771 112 GRPLGIKFDKNGALHVADAYFG-LYK 136 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~g-v~~ 136 (337)
..|.||+++++|+|||||..+. |.+
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEE
Confidence 4699999999999999997654 544
No 84
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.41 E-value=0.0021 Score=62.08 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=46.1
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCc--cCceeeeeecCCccEEEEcCCCCeeEEEecc--ccceeeEEEccCCCEEEEEe
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKY--KSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN--LHFANGVELSADESFVIVAE 265 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~--~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~--~~~p~gia~~~dg~~lyva~ 265 (337)
-+++|.+++||+.|+||+....+.. .+. ...-+.+..=+++++++.....+ -+--.|.+++||++++||.-
T Consensus 498 ~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~-----~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v 572 (616)
T COG3211 498 WFNSPDNLAFDPWGRLWIQTDGSGSTLRNR-----FRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV 572 (616)
T ss_pred cccCCCceEECCCCCEEEEecCCCCccCcc-----cccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe
Confidence 4788999999999999987655331 110 00111333334555555444332 23457999999999999976
Q ss_pred CC
Q psy4771 266 TM 267 (337)
Q Consensus 266 ~~ 267 (337)
..
T Consensus 573 QH 574 (616)
T COG3211 573 QH 574 (616)
T ss_pred cC
Confidence 54
No 85
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.39 E-value=0.023 Score=51.12 Aligned_cols=170 Identities=15% Similarity=0.167 Sum_probs=88.1
Q ss_pred CccCCcceEEECCCCcEEEEECCCcE-EEEEcC--C--CeEEEE-eccccccCCCCCCCCCceeeCCCCCcccccceeee
Q psy4771 109 QQCGRPLGIKFDKNGALHVADAYFGL-YKVNVT--T--GQTEQL-ISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISM 182 (337)
Q Consensus 109 ~~~~~P~Gl~~d~~G~lyVad~~~gv-~~vd~~--~--g~~~~l-~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~ 182 (337)
+.+..|+||++.|.|.+||+|...+. ..+|.+ + +....+ +... ...+.
T Consensus 20 p~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP-~~~~~------------------------- 73 (336)
T TIGR03118 20 PGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIP-APPPL------------------------- 73 (336)
T ss_pred ccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEec-CCCCC-------------------------
Confidence 45677999999999999999987662 333332 1 111111 1100 00110
Q ss_pred ccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCee----E-EEecc---ccceeeEEE
Q psy4771 183 DTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN----K-VLIAN---LHFANGVEL 254 (337)
Q Consensus 183 ~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~----~-~~~~~---~~~p~gia~ 254 (337)
.....|.++++.....+-++...... ...-+....+|.|.-+.|.-+.. . ++.+. ...=.|+|+
T Consensus 74 ------~~~~~PTGiVfN~~~~F~vt~~g~~~--~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi 145 (336)
T TIGR03118 74 ------AAEGTPTGQVFNGSDTFVVSGEGITG--PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAV 145 (336)
T ss_pred ------CCCCCccEEEEeCCCceEEcCCCccc--ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEE
Confidence 02345777777654334344422110 00012234456666666543222 0 12221 112257777
Q ss_pred ccC--CCEEEEEeCCCCEEEEEEeeCCCCCceeeeec-CCCC--CCCceeECCCCCEEEEecCC
Q psy4771 255 SAD--ESFVIVAETMSSRVHRYYLKGPKQGKSEVFID-GLPG--LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 255 ~~d--g~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~-~~~g--~Pdgi~~d~dG~l~va~~~~ 313 (337)
... +++||.++..+++|-+|+-+=.+.....-|.+ .+|. -|.||.-- .|+|||+....
T Consensus 146 ~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~q 208 (336)
T TIGR03118 146 GPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQ 208 (336)
T ss_pred eecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEec
Confidence 743 67999999999999999754222211223443 1332 27777543 57899987644
No 86
>KOG0318|consensus
Probab=97.38 E-value=0.073 Score=51.00 Aligned_cols=219 Identities=18% Similarity=0.230 Sum_probs=115.0
Q ss_pred EEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcCCCe
Q psy4771 67 AVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTGQ 143 (337)
Q Consensus 67 ~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~ 143 (337)
++.+ .||..| +...+|+|+-||......+..++.. ...-+.-.+|.+.||+ ++.-+.+...+...|..+++
T Consensus 195 ~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~------~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 195 CVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDS------DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred eEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCC------CCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 4445 578888 7788999999987444444344321 2344567789999998 45444443444444444444
Q ss_pred EEEEeccccccCCCCC----CCCCceeeCCCCCcc----cccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCcc
Q psy4771 144 TEQLISMDTEIDGAKP----QIPNSVTVDSDGQTG----QTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYK 215 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~----~~P~~v~~~~~g~~~----~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~ 215 (337)
+.+-.......+-+.. ..-+-++++-+|.+- ....+..+ +.| --.....+++.+||.-.++-
T Consensus 269 lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~---i~G-HnK~ITaLtv~~d~~~i~Sg------ 338 (603)
T KOG0318|consen 269 LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKV---ISG-HNKSITALTVSPDGKTIYSG------ 338 (603)
T ss_pred eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhe---ecc-cccceeEEEEcCCCCEEEee------
Confidence 3332221111111100 001113333333321 11111110 001 12345677888887633332
Q ss_pred CceeeeeecCCccEEEEcCCCCeeEEEec--cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCC
Q psy4771 216 SGLFEGLTSGSGRLIQYNPKTKKNKVLIA--NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPG 293 (337)
Q Consensus 216 ~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g 293 (337)
.-+|.|..++..+|....+.. .-..-.+++.+..+ .++-+. ..+.+.++++.+......+++ + ++.
T Consensus 339 --------syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~-~~~t~g-~Dd~l~~~~~~~~~~t~~~~~-~-lg~ 406 (603)
T KOG0318|consen 339 --------SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG-ELFTIG-WDDTLRVISLKDNGYTKSEVV-K-LGS 406 (603)
T ss_pred --------ccCceEEEEecCCccccccccccccceEEEEeecCCC-cEEEEe-cCCeEEEEecccCccccccee-e-cCC
Confidence 235677777776665444432 23345788877655 355444 467899999876544443332 2 456
Q ss_pred CCCceeECCCCC-EEEEecCC
Q psy4771 294 LPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 294 ~Pdgi~~d~dG~-l~va~~~~ 313 (337)
.|-++++.++|. ..+++...
T Consensus 407 QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 407 QPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred CceeEEEcCCCCEEEEEecCc
Confidence 788999999975 55555443
No 87
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.34 E-value=0.073 Score=46.41 Aligned_cols=173 Identities=19% Similarity=0.174 Sum_probs=91.7
Q ss_pred eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEecc
Q psy4771 71 HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISM 150 (337)
Q Consensus 71 ~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~ 150 (337)
.++.+|+...++.|+.++..+.+.+..+. +. .....+ . .-.++.+||+.....++.+|.++|++..-...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~--~~-----~~~~~~--~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFD--LP-----GPISGA--P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEE--CS-----SCGGSG--E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEee--cc-----ccccce--e-eecccccccccceeeeEecccCCcceeeeecc
Confidence 78999987889999999963332221111 00 000111 2 33456899987556799999888877655211
Q ss_pred ccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEE
Q psy4771 151 DTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLI 230 (337)
Q Consensus 151 ~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~ 230 (337)
. ..+. .....+...+++ ++.+|+... .|.|+
T Consensus 105 ~-~~~~--------------------------------~~~~~~~~~~~~-~~~~~~~~~---------------~g~l~ 135 (238)
T PF13360_consen 105 T-SSPP--------------------------------AGVRSSSSPAVD-GDRLYVGTS---------------SGKLV 135 (238)
T ss_dssp --SSCT--------------------------------CSTB--SEEEEE-TTEEEEEET---------------CSEEE
T ss_pred c-cccc--------------------------------cccccccCceEe-cCEEEEEec---------------cCcEE
Confidence 0 0000 012233444444 345666654 35888
Q ss_pred EEcCCCCeeEEEeccccce------------eeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCce
Q psy4771 231 QYNPKTKKNKVLIANLHFA------------NGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNV 298 (337)
Q Consensus 231 ~~d~~~~~~~~~~~~~~~p------------~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi 298 (337)
.+|+++|+...-... ..+ ++-.+..++ .+|++..... +..++...+ . ..+... ...+..+
T Consensus 136 ~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~-~~~~d~~tg---~-~~w~~~-~~~~~~~ 207 (238)
T PF13360_consen 136 ALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGR-VVAVDLATG---E-KLWSKP-ISGIYSL 207 (238)
T ss_dssp EEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTT-EEEEECCTSS-EEEEETTTT---E-EEEEEC-SS-ECEC
T ss_pred EEecCCCcEEEEeec-CCCCCCcceeeecccccceEEECC-EEEEEcCCCe-EEEEECCCC---C-EEEEec-CCCccCC
Confidence 888888876332221 221 233333345 7999886654 555565432 2 223222 2224443
Q ss_pred eECCCCCEEEEe
Q psy4771 299 KRDSKGNFLVSL 310 (337)
Q Consensus 299 ~~d~dG~l~va~ 310 (337)
....++.+|++.
T Consensus 208 ~~~~~~~l~~~~ 219 (238)
T PF13360_consen 208 PSVDGGTLYVTS 219 (238)
T ss_dssp EECCCTEEEEEE
T ss_pred ceeeCCEEEEEe
Confidence 445566788877
No 88
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.33 E-value=0.035 Score=52.57 Aligned_cols=188 Identities=14% Similarity=0.113 Sum_probs=105.2
Q ss_pred EEEeeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEE
Q psy4771 67 AVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTE 145 (337)
Q Consensus 67 ~i~~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~ 145 (337)
+.++.+|.+++-+..|+.+-+++.....+ ..++. ..-+=.-+..+++ .+.+.+.. ..+-.+|.++++++
T Consensus 326 dfa~~~Gd~ia~VSRGkaFi~~~~~~~~i-qv~~~--------~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e~k 395 (668)
T COG4946 326 DFAVVNGDYIALVSRGKAFIMRPWDGYSI-QVGKK--------GGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGEVK 395 (668)
T ss_pred hhccCCCcEEEEEecCcEEEECCCCCeeE-EcCCC--------CceEEEEEccCCc-ceEEeccCCceEEEEecCCceEE
Confidence 33444667776666676666654221111 12211 0001112333444 34555432 24888888888888
Q ss_pred EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeec
Q psy4771 146 QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTS 224 (337)
Q Consensus 146 ~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~ 224 (337)
++.. .+.....+.++++|. +.+++.
T Consensus 396 r~e~----------------------------------------~lg~I~av~vs~dGK~~vvaNd-------------- 421 (668)
T COG4946 396 RIEK----------------------------------------DLGNIEAVKVSPDGKKVVVAND-------------- 421 (668)
T ss_pred EeeC----------------------------------------CccceEEEEEcCCCcEEEEEcC--------------
Confidence 7754 355677889999987 554443
Q ss_pred CCccEEEEcCCCCeeEEEecc-ccceeeEEEccCCCEEEEEeCC---CCEEEEEEeeCCCCCceeeeecCCCCCCCceeE
Q psy4771 225 GSGRLIQYNPKTKKNKVLIAN-LHFANGVELSADESFVIVAETM---SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyva~~~---~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~ 300 (337)
.+.||.+|.++|.++..... -..-.+++++|+.+++-.+-.. ...|..|++++++.-...+ ..++-..-++
T Consensus 422 -r~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT----~ta~DfsPaF 496 (668)
T COG4946 422 -RFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT----PTAYDFSPAF 496 (668)
T ss_pred -ceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC----CcccccCccc
Confidence 24788888888887544321 2345678888888766443322 3578888887754322111 1233345679
Q ss_pred CCCCCEEEEecCCCCCchhhccc
Q psy4771 301 DSKGNFLVSLVCPVEQPSEQAGN 323 (337)
Q Consensus 301 d~dG~l~va~~~~~~~p~~~~~~ 323 (337)
|+||++..=....+-+|+..+++
T Consensus 497 D~d~ryLYfLs~RsLdPs~Drv~ 519 (668)
T COG4946 497 DPDGRYLYFLSARSLDPSNDRVI 519 (668)
T ss_pred CCCCcEEEEEeccccCCCCCeeE
Confidence 99998333333333455555543
No 89
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=97.33 E-value=0.0008 Score=42.04 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=34.1
Q ss_pred EeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 242 LIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 242 ~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
+..++..|+|+|+++.++.||++|...+.|.+++++|.
T Consensus 4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 45578899999999999999999999999999998874
No 90
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.021 Score=51.12 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=44.0
Q ss_pred cccCccEEEe-eCCeEE-EEecCcEEEEEe--CCc-eeEEE----ecCccccCccccCccCCcceEEECCCC-cEEEEEC
Q psy4771 61 EIHGPEAVVK-HKGDLY-MGVDGGHILKLS--GGK-LVPVV----KLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADA 130 (337)
Q Consensus 61 ~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~--~~~-~~~~~----~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~ 130 (337)
.+..||.|++ .+|... ++..+++++.+. .++ ..... .++.. .+.-..-.|++.|+.+ ++||+-.
T Consensus 127 g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~------~k~N~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 127 GFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTT------NKKNKGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred ccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEecccc------CCCCcCceeeecCCCCceEEEEEc
Confidence 3568999999 444444 899999988874 332 21111 12211 0111235699999986 9999975
Q ss_pred CC--cEEEEE
Q psy4771 131 YF--GLYKVN 138 (337)
Q Consensus 131 ~~--gv~~vd 138 (337)
.+ +|+.++
T Consensus 201 r~P~~I~~~~ 210 (316)
T COG3204 201 RNPIGIFEVT 210 (316)
T ss_pred cCCcEEEEEe
Confidence 43 467665
No 91
>KOG0266|consensus
Probab=97.26 E-value=0.031 Score=54.47 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=98.7
Q ss_pred CcccCccEEEe-eCCe-EEEEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EE
Q psy4771 60 NEIHGPEAVVK-HKGD-LYMGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LY 135 (337)
Q Consensus 60 g~~~~P~~i~~-~~g~-ly~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~ 135 (337)
+...+-.++++ .++. +-+...+++|..|+. .....+..+- .......+++|.++|+++++-.+.+ |+
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~---------gH~~~v~~~~f~p~g~~i~Sgs~D~tvr 271 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK---------GHSTYVTSVAFSPDGNLLVSGSDDGTVR 271 (456)
T ss_pred ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec---------CCCCceEEEEecCCCCEEEEecCCCcEE
Confidence 33334455666 4554 447777777777775 3222222221 2234468999999998888866655 77
Q ss_pred EEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCcc
Q psy4771 136 KVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYK 215 (337)
Q Consensus 136 ~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~ 215 (337)
..|.++++....... . -...+++++.++|++.++...
T Consensus 272 iWd~~~~~~~~~l~~---h------------------------------------s~~is~~~f~~d~~~l~s~s~---- 308 (456)
T KOG0266|consen 272 IWDVRTGECVRKLKG---H------------------------------------SDGISGLAFSPDGNLLVSASY---- 308 (456)
T ss_pred EEeccCCeEEEeeec---c------------------------------------CCceEEEEECCCCCEEEEcCC----
Confidence 788887665444321 1 123678899999987766633
Q ss_pred CceeeeeecCCccEEEEcCCCCee--EEEeccccce---eeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 216 SGLFEGLTSGSGRLIQYNPKTKKN--KVLIANLHFA---NGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 216 ~~~~~~~~~~~G~v~~~d~~~~~~--~~~~~~~~~p---~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
+|.|..+|..+++. .....+...+ +-+++++++++++++-. .+.+.-+++.
T Consensus 309 ----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~-d~~~~~w~l~ 364 (456)
T KOG0266|consen 309 ----------DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL-DRTLKLWDLR 364 (456)
T ss_pred ----------CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC-CCeEEEEEcc
Confidence 46889999988883 2334444445 88999999987776654 3455555654
No 92
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=97.20 E-value=0.0031 Score=60.80 Aligned_cols=137 Identities=17% Similarity=0.130 Sum_probs=87.4
Q ss_pred cceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC-C
Q psy4771 114 PLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP-Q 192 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~-~ 192 (337)
...+.+|.+|++||+. ..|++++|..++++..+..+ ++ .
T Consensus 167 V~aLv~D~~g~lWvgT-~dGL~~fd~~~gkalql~s~---------------------------------------~~dk 206 (671)
T COG3292 167 VVALVFDANGRLWVGT-PDGLSYFDAGRGKALQLASP---------------------------------------PLDK 206 (671)
T ss_pred ceeeeeeccCcEEEec-CCcceEEccccceEEEcCCC---------------------------------------cchh
Confidence 3478999999999995 58999999988888777642 12 3
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceee----EEEccCCCEEEEEeCCC
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANG----VELSADESFVIVAETMS 268 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~g----ia~~~dg~~lyva~~~~ 268 (337)
..|.+..|-.|++||.... .++++++.+.+. ...+...|.+ +.-+.+| .+|+....
T Consensus 207 ~I~al~~d~qg~LWVGTdq----------------Gv~~~e~~G~~~--sn~~~~lp~~~I~ll~qD~qG-~lWiGTen- 266 (671)
T COG3292 207 AINALIADVQGRLWVGTDQ----------------GVYLQEAEGWRA--SNWGPMLPSGNILLLVQDAQG-ELWIGTEN- 266 (671)
T ss_pred hHHHHHHHhcCcEEEEecc----------------ceEEEchhhccc--cccCCCCcchheeeeecccCC-CEEEeecc-
Confidence 4677888889999997764 567777665332 2223334444 2333456 58887643
Q ss_pred CEEEEEEeeCCCCCceeeeecCCCC--CCCceeECCCCCEEEEecCC
Q psy4771 269 SRVHRYYLKGPKQGKSEVFIDGLPG--LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 269 ~~I~~~~~~g~~~~~~~~~~~~~~g--~Pdgi~~d~dG~l~va~~~~ 313 (337)
.+.|+......+.... .+..++ ...++..|.+|.+|+.....
T Consensus 267 -Gl~r~~l~rq~Lq~~~--~~~~l~~S~vnsL~~D~dGsLWv~t~~g 310 (671)
T COG3292 267 -GLWRTRLPRQGLQIPL--SKMHLGVSTVNSLWLDTDGSLWVGTYGG 310 (671)
T ss_pred -cceeEecCCCCccccc--cccCCccccccceeeccCCCEeeeccCc
Confidence 4555554332111111 111122 23678899999999999886
No 93
>KOG1446|consensus
Probab=97.20 E-value=0.093 Score=47.12 Aligned_cols=142 Identities=11% Similarity=0.140 Sum_probs=84.6
Q ss_pred CCcceEEECCCCcEEEEECCC-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccc-
Q psy4771 112 GRPLGIKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTE- 185 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~- 185 (337)
.+.+.|.+.|-+..+++.+.. .|+..|....+-.-+.. .. .+.-.|+|++|-+. ..+.|...+.+
T Consensus 101 ~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~----~~-----~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 101 KRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN----LS-----GRPIAAFDPEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred ceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe----cC-----CCcceeECCCCcEEEEecCCCeEEEEEecc
Confidence 345678888888888886654 47777765433332322 11 24557788888776 22333333322
Q ss_pred cCCC----------CCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec----ccccee
Q psy4771 186 IDGA----------KPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA----NLHFAN 250 (337)
Q Consensus 186 ~~~~----------~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~----~~~~p~ 250 (337)
++.. ....-++|.+++||+ |.+++.. +.++.+|.-+|++..-.. ....|-
T Consensus 172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~---------------s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA---------------SFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC---------------CcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 2121 123457899999997 6666554 355666655565432222 233455
Q ss_pred eEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 251 GVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 251 gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+.+++||+++++.++ ..++|..++++.
T Consensus 237 ~a~ftPds~Fvl~gs-~dg~i~vw~~~t 263 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGS-DDGTIHVWNLET 263 (311)
T ss_pred eEEECCCCcEEEEec-CCCcEEEEEcCC
Confidence 788999998776665 457999998853
No 94
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.18 E-value=0.011 Score=53.54 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=47.0
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~ 266 (337)
.+..|.+--.. +|+|||+|+. .|.+.++|+++|+.+.+..--.+|.|+++. |+.++|+-+
T Consensus 201 GLsmPhSPRWh-dgrLwvldsg--------------tGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 201 GLSMPHSPRWY-QGKLWLLNSG--------------RGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred CccCCcCCcEe-CCeEEEEECC--------------CCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEec
Confidence 35556655553 5899999987 459999999989888887767799999998 877777654
No 95
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=97.10 E-value=0.026 Score=54.72 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=73.6
Q ss_pred eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEecc
Q psy4771 71 HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISM 150 (337)
Q Consensus 71 ~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~ 150 (337)
.+|.+|+++.+| +++++..+.+.+..-.. +....-+.+..|-.|+|||.. +.|+++.++++-...-..
T Consensus 174 ~~g~lWvgT~dG-L~~fd~~~gkalql~s~--------~~dk~I~al~~d~qg~LWVGT-dqGv~~~e~~G~~~sn~~-- 241 (671)
T COG3292 174 ANGRLWVGTPDG-LSYFDAGRGKALQLASP--------PLDKAINALIADVQGRLWVGT-DQGVYLQEAEGWRASNWG-- 241 (671)
T ss_pred ccCcEEEecCCc-ceEEccccceEEEcCCC--------cchhhHHHHHHHhcCcEEEEe-ccceEEEchhhccccccC--
Confidence 478899999898 99998855443321100 111223467788899999995 689999998762221111
Q ss_pred ccccCCCCCCCCCc----eeeCCCCCcc--cccceeeec--cc-------cCCCCCCCCccEEEcCCCcEEEEcCC
Q psy4771 151 DTEIDGAKPQIPNS----VTVDSDGQTG--QTEQLISMD--TE-------IDGAKPQIPNSVTVDSDGMVYWSDSS 211 (337)
Q Consensus 151 ~~~~~g~~~~~P~~----v~~~~~g~~~--~~~~v~~~~--~~-------~~~~~~~~pn~v~vd~~G~lyvtd~~ 211 (337)
.++|.+ +..|.+|++= +.++..... .+ -...+.+..|++..|.+|.+|+++..
T Consensus 242 --------~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~ 309 (671)
T COG3292 242 --------PMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYG 309 (671)
T ss_pred --------CCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccC
Confidence 124444 3346677664 333333222 11 11123456689999999999998876
No 96
>KOG0291|consensus
Probab=97.10 E-value=0.11 Score=51.79 Aligned_cols=181 Identities=15% Similarity=0.099 Sum_probs=106.2
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC--cEEEEEcCCCeEEEEec
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF--GLYKVNVTTGQTEQLIS 149 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~--gv~~vd~~~g~~~~l~~ 149 (337)
+..+++..-+|++--||-...+.+.+|- .+....-..+++|+.|.|.++-+.. .|+..+.++|+..-+..
T Consensus 404 g~~llssSLDGtVRAwDlkRYrNfRTft--------~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs 475 (893)
T KOG0291|consen 404 GNVLLSSSLDGTVRAWDLKRYRNFRTFT--------SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS 475 (893)
T ss_pred CCEEEEeecCCeEEeeeecccceeeeec--------CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc
Confidence 4455677778877777764433333321 1222334589999999998886443 48888989998765543
Q ss_pred cccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccE
Q psy4771 150 MDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRL 229 (337)
Q Consensus 150 ~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v 229 (337)
..+| -..++.++++|.+.++-+-.+ .=++
T Consensus 476 ---GHEg------------------------------------PVs~l~f~~~~~~LaS~SWDk------------TVRi 504 (893)
T KOG0291|consen 476 ---GHEG------------------------------------PVSGLSFSPDGSLLASGSWDK------------TVRI 504 (893)
T ss_pred ---CCCC------------------------------------cceeeEEccccCeEEeccccc------------eEEE
Confidence 1222 146788999998665554321 1255
Q ss_pred EEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC-CCCCc-------------eeeeec-C--CC
Q psy4771 230 IQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG-PKQGK-------------SEVFID-G--LP 292 (337)
Q Consensus 230 ~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g-~~~~~-------------~~~~~~-~--~~ 292 (337)
|-+=...++.+.+. --.-.-++++.|||+.|-|+.. .+.|.-|+... ...+. ...+.. + ..
T Consensus 505 W~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTl-dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~ 582 (893)
T KOG0291|consen 505 WDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATL-DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKG 582 (893)
T ss_pred EEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEe-cceEEEEEhhhceeeccccchhhccccccccceeehhhcccC
Confidence 54433445554432 2234568999999998888765 45677776642 11111 111111 0 01
Q ss_pred CCCCceeECCCCCEEEEecCC
Q psy4771 293 GLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 293 g~Pdgi~~d~dG~l~va~~~~ 313 (337)
-.-..|+...||++.+|....
T Consensus 583 K~Ftti~ySaDG~~IlAgG~s 603 (893)
T KOG0291|consen 583 KTFTTICYSADGKCILAGGES 603 (893)
T ss_pred CceEEEEEcCCCCEEEecCCc
Confidence 123568888888877777655
No 97
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.08 E-value=0.03 Score=51.98 Aligned_cols=139 Identities=17% Similarity=0.237 Sum_probs=78.1
Q ss_pred CcceEEECCCCcEEEEECCC-------cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccc
Q psy4771 113 RPLGIKFDKNGALHVADAYF-------GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTE 185 (337)
Q Consensus 113 ~P~Gl~~d~~G~lyVad~~~-------gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~ 185 (337)
.+.||++.++|.+||++.+. .|++++.++.....+.- |..+.....+.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~v------------P~~~~~~~~~~------------- 140 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPV------------PAAFLPDANGT------------- 140 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEcc------------ccccccccCcc-------------
Confidence 67899998889999998765 39999987433344421 22111111000
Q ss_pred cCC-CCCCCCccEEEcCCCc-EEEEcCCCCccCceee-eeecCCccEEEEcCCC-Ce-eEE---Eec------cccceee
Q psy4771 186 IDG-AKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFE-GLTSGSGRLIQYNPKT-KK-NKV---LIA------NLHFANG 251 (337)
Q Consensus 186 ~~~-~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~-~~~~~~G~v~~~d~~~-~~-~~~---~~~------~~~~p~g 251 (337)
.+ ..=....+|++.++|+ ||+.-.+.-..+.... ......-+|++||+.+ ++ ... ..+ ....+..
T Consensus 141 -~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd 219 (326)
T PF13449_consen 141 -SGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISD 219 (326)
T ss_pred -ccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCcee
Confidence 00 0123467999999998 8877665422111100 0011113788999875 21 111 122 2334556
Q ss_pred EEEccCCCEEEEEeCC-------CCEEEEEEeeC
Q psy4771 252 VELSADESFVIVAETM-------SSRVHRYYLKG 278 (337)
Q Consensus 252 ia~~~dg~~lyva~~~-------~~~I~~~~~~g 278 (337)
++.-+|++ ++|-|.. ..+|+++++.+
T Consensus 220 ~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 220 IAALPDGR-LLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred EEEECCCc-EEEEEccCCCCccceEEEEEEEccc
Confidence 66777875 9998876 34666777653
No 98
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.05 E-value=0.0077 Score=59.38 Aligned_cols=120 Identities=18% Similarity=0.330 Sum_probs=72.8
Q ss_pred CCCCCccEEEcC-CCcEEEEcCCCCcc--Cce---eeeeecCCccEEEEcCCCC-------eeEEEe-------------
Q psy4771 190 KPQIPNSVTVDS-DGMVYWSDSSTKYK--SGL---FEGLTSGSGRLIQYNPKTK-------KNKVLI------------- 243 (337)
Q Consensus 190 ~~~~pn~v~vd~-~G~lyvtd~~~~~~--~~~---~~~~~~~~G~v~~~d~~~~-------~~~~~~------------- 243 (337)
++..|.++++++ +|.+||+.+...-+ ..+ ........|.|+++++..+ +.+.++
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 578899999999 57899987664311 000 0012456689999998765 332222
Q ss_pred -----ccccceeeEEEccCCCEEEEEeCCCCE------------EEEEE--------eeCCCCCceeeeecC-CCCCCCc
Q psy4771 244 -----ANLHFANGVELSADESFVIVAETMSSR------------VHRYY--------LKGPKQGKSEVFIDG-LPGLPDN 297 (337)
Q Consensus 244 -----~~~~~p~gia~~~dg~~lyva~~~~~~------------I~~~~--------~~g~~~~~~~~~~~~-~~g~Pdg 297 (337)
..+..|.+|+++++|+ ||+++-.... ++.+. ..+...+....|... ...-..|
T Consensus 428 ~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG 506 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITG 506 (524)
T ss_pred CcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCccccc
Confidence 2266899999999996 7776644332 11121 112223333444331 1234679
Q ss_pred eeECCCCC-EEEEe
Q psy4771 298 VKRDSKGN-FLVSL 310 (337)
Q Consensus 298 i~~d~dG~-l~va~ 310 (337)
+++++||+ +||..
T Consensus 507 ~~fspDg~tlFvni 520 (524)
T PF05787_consen 507 PCFSPDGRTLFVNI 520 (524)
T ss_pred ceECCCCCEEEEEE
Confidence 99999997 88876
No 99
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.02 E-value=0.052 Score=52.24 Aligned_cols=109 Identities=14% Similarity=0.184 Sum_probs=67.8
Q ss_pred eEEECCCC-cEEEEECCCc---EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 116 GIKFDKNG-ALHVADAYFG---LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 116 Gl~~d~~G-~lyVad~~~g---v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
.-+|.+|| .|.++....+ |+.+|..++....+.. ..|.
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~----~~gi---------------------------------- 283 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN----GFGI---------------------------------- 283 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc----CCcc----------------------------------
Confidence 45677888 6666644433 8999988777555432 1221
Q ss_pred CCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 192 QIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 192 ~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
-..=.+.|||+ |+|+..... .-.||++|+++++.+.+.........-.++|||++|.+.....+.
T Consensus 284 --~~~Ps~spdG~~ivf~Sdr~G------------~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~ 349 (425)
T COG0823 284 --NTSPSWSPDGSKIVFTSDRGG------------RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ 349 (425)
T ss_pred --ccCccCCCCCCEEEEEeCCCC------------CcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCc
Confidence 01233678886 655543321 128999999988876665554444466789999988887754444
Q ss_pred --EEEEEe
Q psy4771 271 --VHRYYL 276 (337)
Q Consensus 271 --I~~~~~ 276 (337)
|..+++
T Consensus 350 ~~i~~~~~ 357 (425)
T COG0823 350 WDIDKNDL 357 (425)
T ss_pred eeeEEecc
Confidence 555554
No 100
>KOG0279|consensus
Probab=96.98 E-value=0.18 Score=44.75 Aligned_cols=173 Identities=18% Similarity=0.228 Sum_probs=105.4
Q ss_pred CeEEEEecCcEEEEEeC--Ccee---EEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEE
Q psy4771 73 GDLYMGVDGGHILKLSG--GKLV---PVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQ 146 (337)
Q Consensus 73 g~ly~d~~~g~I~~~~~--~~~~---~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~ 146 (337)
+.++....+..|+.|+. .+.. ....+ ......-.++++.++|+..++-+..+ ++..|..+|+-++
T Consensus 29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~---------~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~ 99 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRL---------TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR 99 (315)
T ss_pred ceEEEcccceEEEEEEeccCccccCceeeee---------eccceEecceEEccCCceEEeccccceEEEEEecCCcEEE
Confidence 45668888888888864 1111 11111 01224466899999999999877766 7778998876544
Q ss_pred EeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCC
Q psy4771 147 LISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGS 226 (337)
Q Consensus 147 l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~ 226 (337)
..- | .-.-.-++++++|.+-.++-+..+
T Consensus 100 ~f~------G---------------------------------H~~dVlsva~s~dn~qivSGSrDk------------- 127 (315)
T KOG0279|consen 100 RFV------G---------------------------------HTKDVLSVAFSTDNRQIVSGSRDK------------- 127 (315)
T ss_pred EEE------e---------------------------------cCCceEEEEecCCCceeecCCCcc-------------
Confidence 432 1 112356888999887777766543
Q ss_pred ccEEEEcCCCCeeEEEecc--ccceeeEEEccCCC-EEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCC
Q psy4771 227 GRLIQYNPKTKKNKVLIAN--LHFANGVELSADES-FVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSK 303 (337)
Q Consensus 227 G~v~~~d~~~~~~~~~~~~--~~~p~gia~~~dg~-~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~d 303 (337)
.|-.+|..+...-.+.++ -..-+.++|+|+.+ -+.++......|.+.++++-+. ...|.. ..++-.-+++.+|
T Consensus 128 -Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~g-h~~~v~t~~vSpD 203 (315)
T KOG0279|consen 128 -TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIG-HSGYVNTVTVSPD 203 (315)
T ss_pred -eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhcccc-ccccEEEEEECCC
Confidence 444444443333233333 45778999999863 4555555567777777765322 122222 3456677788888
Q ss_pred CCEEEEe
Q psy4771 304 GNFLVSL 310 (337)
Q Consensus 304 G~l~va~ 310 (337)
|.+..+-
T Consensus 204 GslcasG 210 (315)
T KOG0279|consen 204 GSLCASG 210 (315)
T ss_pred CCEEecC
Confidence 8776663
No 101
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.96 E-value=0.2 Score=43.57 Aligned_cols=156 Identities=20% Similarity=0.178 Sum_probs=84.9
Q ss_pred EeeCCeEEEEecCcEEEEEeCCceeEEEe---cCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEE
Q psy4771 69 VKHKGDLYMGVDGGHILKLSGGKLVPVVK---LGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 69 ~~~~g~ly~d~~~g~I~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
...++.+|+...+++|+.++..+....-. .... ...+..+....++ .+.+|++.....|+.+|+++|+..
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP------PAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC------TCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEE
T ss_pred eecccccccccceeeeEecccCCcceeeeecccccc------ccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEE
Confidence 34788999777888999999522222211 1111 0112234445554 447888876567999999999875
Q ss_pred EEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecC
Q psy4771 146 QLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSG 225 (337)
Q Consensus 146 ~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~ 225 (337)
.-... ....+. ..+ . .+...++-.+-.+|.+|++...
T Consensus 146 w~~~~-~~~~~~-----~~~--------------~---------~~~~~~~~~~~~~~~v~~~~~~-------------- 182 (238)
T PF13360_consen 146 WKYPV-GEPRGS-----SPI--------------S---------SFSDINGSPVISDGRVYVSSGD-------------- 182 (238)
T ss_dssp EEEES-STT-SS-------E--------------E---------EETTEEEEEECCTTEEEEECCT--------------
T ss_pred EEeec-CCCCCC-----cce--------------e---------eecccccceEEECCEEEEEcCC--------------
Confidence 54431 000000 000 0 0001112222234578877754
Q ss_pred CccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 226 SGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
|+++.+|..+++.. .........++ ...+++.||+++ ..++|+.++++.
T Consensus 183 -g~~~~~d~~tg~~~-w~~~~~~~~~~-~~~~~~~l~~~~-~~~~l~~~d~~t 231 (238)
T PF13360_consen 183 -GRVVAVDLATGEKL-WSKPISGIYSL-PSVDGGTLYVTS-SDGRLYALDLKT 231 (238)
T ss_dssp -SSEEEEETTTTEEE-EEECSS-ECEC-EECCCTEEEEEE-TTTEEEEEETTT
T ss_pred -CeEEEEECCCCCEE-EEecCCCccCC-ceeeCCEEEEEe-CCCEEEEEECCC
Confidence 35677788888754 22223333332 335666899999 678999999764
No 102
>KOG2055|consensus
Probab=96.96 E-value=0.1 Score=49.19 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=82.5
Q ss_pred eEEECCCCc-EEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCC
Q psy4771 116 GIKFDKNGA-LHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQI 193 (337)
Q Consensus 116 Gl~~d~~G~-lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~ 193 (337)
..+|.++|. .+++..... ++.+|..+.++..+..+ .|. .-.+
T Consensus 262 ~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~----~g~--------------------------------e~~~ 305 (514)
T KOG2055|consen 262 KAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP----YGV--------------------------------EEKS 305 (514)
T ss_pred eeeecCCCceEEEecccceEEEEeeccccccccccCC----CCc--------------------------------ccch
Confidence 567888996 444433233 78889988888877642 221 1223
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEE
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHR 273 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~ 273 (337)
..-..|++++.+..... ..|.|+.+...+++...-..--....+++|+.|++.||++... +.|++
T Consensus 306 ~e~FeVShd~~fia~~G--------------~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~-GeV~v 370 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAG--------------NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT-GEVYV 370 (514)
T ss_pred hheeEecCCCCeEEEcc--------------cCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC-ceEEE
Confidence 45667777776333222 2456666666555432111111245788999999888887654 48999
Q ss_pred EEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecC
Q psy4771 274 YYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 274 ~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~ 312 (337)
+++.-. .-...|.+...-.-..+|+..+|. |+|...
T Consensus 371 ~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS 406 (514)
T KOG2055|consen 371 WNLRQN--SCLHRFVDDGSVHGTSLCISLNGS-YLATGS 406 (514)
T ss_pred EecCCc--ceEEEEeecCccceeeeeecCCCc-eEEecc
Confidence 998643 223344442111235566667776 445443
No 103
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.95 E-value=0.11 Score=48.96 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=39.3
Q ss_pred ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee--cC--CCCCCCceeE--CCC--CCEEEEecCC
Q psy4771 246 LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI--DG--LPGLPDNVKR--DSK--GNFLVSLVCP 313 (337)
Q Consensus 246 ~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~--~~--~~g~Pdgi~~--d~d--G~l~va~~~~ 313 (337)
...+.|++++....+||++|.. ..||+|+.+.......+.+. .+ +-.-..||++ ..+ |.|.|+.-..
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~ 281 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGD 281 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGG
T ss_pred CCcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCC
Confidence 3478999999988899999976 68999998643222222221 21 2223567776 344 4455555443
No 104
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.93 E-value=0.12 Score=44.17 Aligned_cols=113 Identities=18% Similarity=0.161 Sum_probs=70.2
Q ss_pred CcceEEECCCC-cEEEEECC--CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 113 RPLGIKFDKNG-ALHVADAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 113 ~P~Gl~~d~~G-~lyVad~~--~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
....+++.|+| ++.|+... ..+..+|.++..+..+.
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~----------------------------------------- 99 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG----------------------------------------- 99 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-----------------------------------------
Confidence 36789999998 55555322 24666776533333321
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM-- 267 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~-- 267 (337)
-...|.|..+|+|++.++-.. ....|.|..+|..+.+...-. .......++++|||+++..+.+.
T Consensus 100 -~~~~n~i~wsP~G~~l~~~g~-----------~n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t~~r 166 (194)
T PF08662_consen 100 -TQPRNTISWSPDGRFLVLAGF-----------GNLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATTSPR 166 (194)
T ss_pred -CCCceEEEECCCCCEEEEEEc-----------cCCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEeccc
Confidence 123588999999985554332 123467888887755442222 23356899999999988877754
Q ss_pred ---CCEEEEEEeeCC
Q psy4771 268 ---SSRVHRYYLKGP 279 (337)
Q Consensus 268 ---~~~I~~~~~~g~ 279 (337)
.+.+..++..|.
T Consensus 167 ~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 167 LRVDNGFKIWSFQGR 181 (194)
T ss_pred eeccccEEEEEecCe
Confidence 355555665554
No 105
>KOG1446|consensus
Probab=96.91 E-value=0.3 Score=43.97 Aligned_cols=179 Identities=16% Similarity=0.179 Sum_probs=98.4
Q ss_pred ccCCcceEEECCCCcEEEE-ECCCcEEEEEcCCCeE-EEEeccccccCCCCCCCCCceeeCCCCCcc------cccceee
Q psy4771 110 QCGRPLGIKFDKNGALHVA-DAYFGLYKVNVTTGQT-EQLISMDTEIDGAKPQIPNSVTVDSDGQTG------QTEQLIS 181 (337)
Q Consensus 110 ~~~~P~Gl~~d~~G~lyVa-d~~~gv~~vd~~~g~~-~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~------~~~~v~~ 181 (337)
..++++.|.++++|...++ .....+..+|...|+. +.+.. ...| ++.+.+...-+.+ .++.|.-
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s---kkyG-----~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS---KKYG-----VDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec---cccc-----ccEEEEecCCceEEEccCCCCCceEE
Confidence 4577899999999955555 4334688888766654 44433 2223 2333333333333 1123333
Q ss_pred ecc-------ccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEE
Q psy4771 182 MDT-------EIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVEL 254 (337)
Q Consensus 182 ~~~-------~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~ 254 (337)
+.- .+.| --...|.|.+.|-+..+++.+-. ..|..+|....+...+. .+..+.-+|+
T Consensus 85 Lsl~dNkylRYF~G-H~~~V~sL~~sP~~d~FlS~S~D--------------~tvrLWDlR~~~cqg~l-~~~~~pi~Af 148 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPG-HKKRVNSLSVSPKDDTFLSSSLD--------------KTVRLWDLRVKKCQGLL-NLSGRPIAAF 148 (311)
T ss_pred EEeecCceEEEcCC-CCceEEEEEecCCCCeEEecccC--------------CeEEeeEecCCCCceEE-ecCCCcceeE
Confidence 321 1111 12456888888877777766542 24555554433332222 2345566899
Q ss_pred ccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCC--CCCCceeECCCCC-EEEEecCC
Q psy4771 255 SADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLP--GLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 255 ~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~--g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
+|+| .++++..++..|.-|++..-..+-.+.|.-+.+ ..=.+|.+.+||+ +.++...+
T Consensus 149 Dp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s 209 (311)
T KOG1446|consen 149 DPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS 209 (311)
T ss_pred CCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC
Confidence 9999 466666666699999986322233333332111 1235788888887 66665544
No 106
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.88 E-value=0.088 Score=48.88 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=64.5
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCee-EEE--eccc-------------cceeeEEEcc
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN-KVL--IANL-------------HFANGVELSA 256 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~-~~~--~~~~-------------~~p~gia~~~ 256 (337)
-+.+|++.++|.+|+++-.... ....-+|++++.+ |+. +.+ ...+ ....|+|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~--------~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~ 156 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRT--------GGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP 156 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccC--------CCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC
Confidence 4679999889999999976410 0012378888876 433 222 1111 1345899999
Q ss_pred CCCEEEEEeCCC---------------CEEEEEEeeCCC--CCceeeeecC-----CCCCCCceeECCCCCEEEEecC
Q psy4771 257 DESFVIVAETMS---------------SRVHRYYLKGPK--QGKSEVFIDG-----LPGLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 257 dg~~lyva~~~~---------------~~I~~~~~~g~~--~~~~~~~~~~-----~~g~Pdgi~~d~dG~l~va~~~ 312 (337)
||++||++.... .||++|+..... ..+...-.+. ....+..++.-++|+++|=...
T Consensus 157 dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~ 234 (326)
T PF13449_consen 157 DGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERD 234 (326)
T ss_pred CCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEcc
Confidence 999888776543 467778765311 1111111121 0112556666778888876655
No 107
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.84 E-value=0.2 Score=47.21 Aligned_cols=69 Identities=14% Similarity=0.183 Sum_probs=44.3
Q ss_pred EEeeCCeEEEEecCcEEEEEeCCceeEEEe--cCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEE
Q psy4771 68 VVKHKGDLYMGVDGGHILKLSGGKLVPVVK--LGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 68 i~~~~g~ly~d~~~g~I~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
.++.++.+|+...+|.++.++..+.+.+-. ++. ... .+.+++ ++++||+.....++.+|.++|++.
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~--------~~~---~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETGKRLWRVDLDE--------RLS---GGVGAD-GGLVFVGTEKGEVIALDAEDGKEL 128 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCCcEeeeecCCC--------Ccc---cceEEc-CCEEEEEcCCCEEEEEECCCCcEe
Confidence 345788999888889999998633222211 111 111 234554 568999875556999999888776
Q ss_pred EEe
Q psy4771 146 QLI 148 (337)
Q Consensus 146 ~l~ 148 (337)
.-.
T Consensus 129 W~~ 131 (377)
T TIGR03300 129 WRA 131 (377)
T ss_pred eee
Confidence 543
No 108
>KOG0282|consensus
Probab=96.79 E-value=0.018 Score=54.32 Aligned_cols=146 Identities=17% Similarity=0.196 Sum_probs=91.9
Q ss_pred cCCcceEEECCCC-cEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCC
Q psy4771 111 CGRPLGIKFDKNG-ALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDG 188 (337)
Q Consensus 111 ~~~P~Gl~~d~~G-~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~ 188 (337)
...|..+.+.|++ +++++-...+ |+.+|..++++.+-..
T Consensus 299 ~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--------------------------------------- 339 (503)
T KOG0282|consen 299 DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--------------------------------------- 339 (503)
T ss_pred CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---------------------------------------
Confidence 3458889999998 8888865544 8999987776432221
Q ss_pred CCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCe-eEEEe-ccccceeeEEEccCCCEEEEEeC
Q psy4771 189 AKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK-NKVLI-ANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 189 ~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~-~~~~~-~~~~~p~gia~~~dg~~lyva~~ 266 (337)
.-+...+++.+-++|+=+++.+... +=+||-++. .- +.... .....--.+++.|+++ .+++++
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdk------------s~riWe~~~--~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs 404 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDK------------SVRIWENRI--PVPIKNIADPEMHTMPCLTLHPNGK-WFAAQS 404 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCc------------cEEEEEcCC--CccchhhcchhhccCcceecCCCCC-eehhhc
Confidence 1356688999999888666655421 113443331 11 11111 1122234688899985 888899
Q ss_pred CCCEEEEEEeeCC-CCCceeeeec-CCCCCCCceeECCCCCEEEEe
Q psy4771 267 MSSRVHRYYLKGP-KQGKSEVFID-GLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 267 ~~~~I~~~~~~g~-~~~~~~~~~~-~~~g~Pdgi~~d~dG~l~va~ 310 (337)
..|+|..|..... +....+.|.. ..+|++-.+.+.+||.+.++-
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG 450 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG 450 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence 9999999987542 2333344433 246888888888888755444
No 109
>KOG0266|consensus
Probab=96.75 E-value=0.36 Score=46.99 Aligned_cols=145 Identities=14% Similarity=0.188 Sum_probs=89.9
Q ss_pred CcceEEECCCCcEEEEECCC-cEEEEEc-CCCe-EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 113 RPLGIKFDKNGALHVADAYF-GLYKVNV-TTGQ-TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 113 ~P~Gl~~d~~G~lyVad~~~-gv~~vd~-~~g~-~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
...+++|.++|...++-+.. .+...|. +.+. ++.+..
T Consensus 205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g---------------------------------------- 244 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG---------------------------------------- 244 (456)
T ss_pred ceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC----------------------------------------
Confidence 35689999999877765443 3666666 3333 333322
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCC
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMS 268 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~ 268 (337)
-....+++++.++|++.++-.. ++.|..+|..+++...... .-..-+++++++|++.|+.+ ...
T Consensus 245 H~~~v~~~~f~p~g~~i~Sgs~--------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s~d 309 (456)
T KOG0266|consen 245 HSTYVTSVAFSPDGNLLVSGSD--------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA-SYD 309 (456)
T ss_pred CCCceEEEEecCCCCEEEEecC--------------CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc-CCC
Confidence 1234689999999987776654 4577777877776654444 34466889999999866666 558
Q ss_pred CEEEEEEeeCCCCCceeeeecC-CCCCCCceeECCCCC-EEEEecC
Q psy4771 269 SRVHRYYLKGPKQGKSEVFIDG-LPGLPDNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 269 ~~I~~~~~~g~~~~~~~~~~~~-~~g~Pdgi~~d~dG~-l~va~~~ 312 (337)
+.|..+++......-...+... .+..-.-+.++++|. ++++.-.
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence 8899999865431101122211 111125677888886 4444433
No 110
>PTZ00421 coronin; Provisional
Probab=96.73 E-value=0.63 Score=45.81 Aligned_cols=150 Identities=7% Similarity=0.014 Sum_probs=82.5
Q ss_pred CeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccc
Q psy4771 73 GDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMD 151 (337)
Q Consensus 73 g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~ 151 (337)
+.|.+...++.|..||......+..+. .......++++.++|.++++-...+ |..+|+.+++...-...
T Consensus 139 ~iLaSgs~DgtVrIWDl~tg~~~~~l~---------~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~- 208 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVERGKAVEVIK---------CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA- 208 (493)
T ss_pred CEEEEEeCCCEEEEEECCCCeEEEEEc---------CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec-
Confidence 356688889988888864333332221 1123467899999998777755554 78889877654322210
Q ss_pred cccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEE
Q psy4771 152 TEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQ 231 (337)
Q Consensus 152 ~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~ 231 (337)
..+ .....+.+.+++...++-.... ..++.|..
T Consensus 209 --H~~-----------------------------------~~~~~~~w~~~~~~ivt~G~s~----------s~Dr~Vkl 241 (493)
T PTZ00421 209 --HAS-----------------------------------AKSQRCLWAKRKDLIITLGCSK----------SQQRQIML 241 (493)
T ss_pred --CCC-----------------------------------CcceEEEEcCCCCeEEEEecCC----------CCCCeEEE
Confidence 000 0122334445544443322110 12346666
Q ss_pred EcCCCCeeEE-Ee--ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 232 YNPKTKKNKV-LI--ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 232 ~d~~~~~~~~-~~--~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
+|..+..... .. +......-..+++|++.||++..+.+.|..|++...
T Consensus 242 WDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 242 WDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 7765432111 11 111122234678999988988777789999998754
No 111
>KOG0315|consensus
Probab=96.70 E-value=0.16 Score=44.41 Aligned_cols=174 Identities=10% Similarity=0.067 Sum_probs=98.0
Q ss_pred EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCC
Q psy4771 77 MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDG 156 (337)
Q Consensus 77 ~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g 156 (337)
+...+..|-.|.........++ .+.....+.|.+.++++...+.....|+.+|..++.-..++. .+|
T Consensus 15 sA~YDhTIRfWqa~tG~C~rTi---------qh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t----~e~ 81 (311)
T KOG0315|consen 15 SAGYDHTIRFWQALTGICSRTI---------QHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVAT----FEG 81 (311)
T ss_pred eccCcceeeeeehhcCeEEEEE---------ecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeE----Eec
Confidence 5566676666644222212122 134456788999999977777555668888887665444332 121
Q ss_pred CCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCC
Q psy4771 157 AKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKT 236 (337)
Q Consensus 157 ~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~ 236 (337)
.-+....+.+..+|+...|.+. +|.+-.+|...
T Consensus 82 ---------------------------------h~kNVtaVgF~~dgrWMyTgse--------------Dgt~kIWdlR~ 114 (311)
T KOG0315|consen 82 ---------------------------------HTKNVTAVGFQCDGRWMYTGSE--------------DGTVKIWDLRS 114 (311)
T ss_pred ---------------------------------cCCceEEEEEeecCeEEEecCC--------------CceEEEEeccC
Confidence 1123456777778874433332 34555555544
Q ss_pred CeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 237 KKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 237 ~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
-........-.--|.|.+.|+...|++++. ++.|++.|+....- ..+..-+ ..-....+++++||...+|....
T Consensus 115 ~~~qR~~~~~spVn~vvlhpnQteLis~dq-sg~irvWDl~~~~c-~~~liPe-~~~~i~sl~v~~dgsml~a~nnk 188 (311)
T KOG0315|consen 115 LSCQRNYQHNSPVNTVVLHPNQTELISGDQ-SGNIRVWDLGENSC-THELIPE-DDTSIQSLTVMPDGSMLAAANNK 188 (311)
T ss_pred cccchhccCCCCcceEEecCCcceEEeecC-CCcEEEEEccCCcc-ccccCCC-CCcceeeEEEcCCCcEEEEecCC
Confidence 333333333344588999999888888885 46788888753211 1111111 11123567777777766666544
No 112
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.70 E-value=0.031 Score=54.28 Aligned_cols=135 Identities=17% Similarity=0.278 Sum_probs=81.4
Q ss_pred CCCCCccEEEcC-CCcEEEEcCCCCccC--ceeeeeecCCccEEEEcCCCC-------eeEEEe--------cc------
Q psy4771 190 KPQIPNSVTVDS-DGMVYWSDSSTKYKS--GLFEGLTSGSGRLIQYNPKTK-------KNKVLI--------AN------ 245 (337)
Q Consensus 190 ~~~~pn~v~vd~-~G~lyvtd~~~~~~~--~~~~~~~~~~G~v~~~d~~~~-------~~~~~~--------~~------ 245 (337)
+...|.++++.+ .|.+|++......+. .--.-....-|.|+++-+.++ +.+... +.
T Consensus 415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~ 494 (616)
T COG3211 415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANI 494 (616)
T ss_pred cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCc
Confidence 466799999998 477999877643210 000011344578888888765 333222 11
Q ss_pred ----ccceeeEEEccCCCEEEEEeCCCC--------EEEEEEeeCCCCCceeeeecCCC-CCCCceeECCCCC-EEEEec
Q psy4771 246 ----LHFANGVELSADESFVIVAETMSS--------RVHRYYLKGPKQGKSEVFIDGLP-GLPDNVKRDSKGN-FLVSLV 311 (337)
Q Consensus 246 ----~~~p~gia~~~dg~~lyva~~~~~--------~I~~~~~~g~~~~~~~~~~~~~~-g~Pdgi~~d~dG~-l~va~~ 311 (337)
|..|.+|+|++.|+ ||+++-+.. .+..+...+.+.++...|..+-. ..-.|.++.+||+ +||+.
T Consensus 495 ~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v- 572 (616)
T COG3211 495 NANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV- 572 (616)
T ss_pred ccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe-
Confidence 45599999999996 777664432 12222223445666666655322 2457999999986 99999
Q ss_pred CCCCCchhh------ccccCCCcc
Q psy4771 312 CPVEQPSEQ------AGNIRDPAG 329 (337)
Q Consensus 312 ~~~~~p~~~------~~~~~~p~~ 329 (337)
+||-.. ..-...|.+
T Consensus 573 ---QHPGe~~~~~~~~~~s~wP~~ 593 (616)
T COG3211 573 ---QHPGETGTTTNEPLASSWPDG 593 (616)
T ss_pred ---cCCCCcccccccCccCcCCCC
Confidence 555333 344555554
No 113
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.69 E-value=0.079 Score=50.47 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=40.8
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEE
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
+.++.+|+...+|+++.++..+.+.+-+. ..+.+..+.+ .+|+||+++....++.+|.++|+..
T Consensus 254 v~~~~vy~~~~~g~l~ald~~tG~~~W~~-----------~~~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 254 VVGGVVYALAYNGNLVALDLRSGQIVWKR-----------EYGSVNDFAV-DGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred EECCEEEEEEcCCeEEEEECCCCCEEEee-----------cCCCccCcEE-ECCEEEEEcCCCeEEEEECCCCcEE
Confidence 35788997667888999987333222111 0122233444 3568999986666999999888653
No 114
>KOG0272|consensus
Probab=96.64 E-value=0.064 Score=50.00 Aligned_cols=146 Identities=16% Similarity=0.221 Sum_probs=90.1
Q ss_pred CccCCcceEEECCCCcEEEEECCCcEEE-EEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccC
Q psy4771 109 QQCGRPLGIKFDKNGALHVADAYFGLYK-VNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187 (337)
Q Consensus 109 ~~~~~P~Gl~~d~~G~lyVad~~~gv~~-vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~ 187 (337)
+...+..-++|.|+|+...+..+..-++ .|..++....+. +|
T Consensus 259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q------EG------------------------------- 301 (459)
T KOG0272|consen 259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ------EG------------------------------- 301 (459)
T ss_pred cchhhheeeeecCCCceeeecccccchhhcccccchhhHhh------cc-------------------------------
Confidence 3446777899999998888866644332 355444322111 12
Q ss_pred CCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCe-eEEEeccccceeeEEEccCCCEEEEEeC
Q psy4771 188 GAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK-NKVLIANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 188 ~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~-~~~~~~~~~~p~gia~~~dg~~lyva~~ 266 (337)
--....++++.+||.+..|... +.-|+||-.. +|. +-.+......-.+|+|+|+| +...+-+
T Consensus 302 --Hs~~v~~iaf~~DGSL~~tGGl------------D~~~RvWDlR--tgr~im~L~gH~k~I~~V~fsPNG-y~lATgs 364 (459)
T KOG0272|consen 302 --HSKGVFSIAFQPDGSLAATGGL------------DSLGRVWDLR--TGRCIMFLAGHIKEILSVAFSPNG-YHLATGS 364 (459)
T ss_pred --cccccceeEecCCCceeeccCc------------cchhheeecc--cCcEEEEecccccceeeEeECCCc-eEEeecC
Confidence 1234688999999998776653 3346766543 453 44455556677899999999 6777777
Q ss_pred CCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECC-CCCEEEEec
Q psy4771 267 MSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS-KGNFLVSLV 311 (337)
Q Consensus 267 ~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~-dG~l~va~~ 311 (337)
..+.+.+.++..... .-+ +......-..++.++ .|++.++..
T Consensus 365 ~Dnt~kVWDLR~r~~--ly~-ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRSE--LYT-IPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred CCCcEEEeeeccccc--cee-cccccchhhheEecccCCeEEEEcc
Confidence 788888888765322 111 111112457888887 566666554
No 115
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.62 E-value=0.22 Score=47.41 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=44.0
Q ss_pred EeeCCeEEEEecCcEEEEEeCCceeEEEe--cCccccCccccCccCC-cceEEECCCCcEEEEECCCcEEEEEcCCCeEE
Q psy4771 69 VKHKGDLYMGVDGGHILKLSGGKLVPVVK--LGKDCYGFKYEQQCGR-PLGIKFDKNGALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 69 ~~~~g~ly~d~~~g~I~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~-P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
++.++.+|+...++.++.++..+.+.+-+ +... .+......... -.+++++ ++++|+.+....++.+|.++|+..
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~v~-~~~v~v~~~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEK-DGWFSKNKSALLSGGVTVA-GGKVYIGSEKGQVYALNAEDGEVA 143 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCc-ccccccccccccccccEEE-CCEEEEEcCCCEEEEEECCCCCCc
Confidence 44789999888889999998633222211 1110 00000000000 1234553 468999875455999999888765
Q ss_pred EEe
Q psy4771 146 QLI 148 (337)
Q Consensus 146 ~l~ 148 (337)
.-.
T Consensus 144 W~~ 146 (394)
T PRK11138 144 WQT 146 (394)
T ss_pred ccc
Confidence 543
No 116
>KOG0263|consensus
Probab=96.61 E-value=0.11 Score=51.88 Aligned_cols=105 Identities=10% Similarity=0.069 Sum_probs=67.0
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccc-eeeEEEccCCCEEEEEeCCCC
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHF-ANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~-p~gia~~~dg~~lyva~~~~~ 269 (337)
++-.+.+.+.|+.+...|.++.+ .+-.+|..+|...++..|-.. -..++++|+|++| ++-...+
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~--------------tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg~ed~ 599 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDR--------------TVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL-ASGDEDG 599 (707)
T ss_pred ccccceEEECCcccccccCCCCc--------------eEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE-eecccCC
Confidence 44467788999877655654422 444455555655555555443 4789999999644 4444567
Q ss_pred EEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 270 RVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 270 ~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
.|..+|+.++.. ...+.++ .+..+.|.+..||++.|+....
T Consensus 600 ~I~iWDl~~~~~--v~~l~~H-t~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 600 LIKIWDLANGSL--VKQLKGH-TGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred cEEEEEcCCCcc--hhhhhcc-cCceeEEEEecCCCEEEecCCC
Confidence 888888865322 1122222 4557889999999999888766
No 117
>KOG0286|consensus
Probab=96.59 E-value=0.51 Score=42.31 Aligned_cols=173 Identities=13% Similarity=0.085 Sum_probs=100.3
Q ss_pred EEEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCCc-EEEEEcCCCe
Q psy4771 67 AVVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYFG-LYKVNVTTGQ 143 (337)
Q Consensus 67 ~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~g-v~~vd~~~g~ 143 (337)
+..+ +|+.|.++..+....-||-++.+.+..|. ...+...+|.+.| +++.||+-+-.. ....|...+.
T Consensus 150 cC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~---------GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 150 CCRFLDDNHILTGSGDMTCALWDIETGQQTQVFH---------GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred EEEEcCCCceEecCCCceEEEEEcccceEEEEec---------CCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence 3444 78889999999999999875554444443 2335577899988 789999964433 4445655454
Q ss_pred EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeee
Q psy4771 144 TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 144 ~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~ 223 (337)
..+-.. |. -.-.|.|.+-|+|.-+.|-+...
T Consensus 221 c~qtF~------gh---------------------------------esDINsv~ffP~G~afatGSDD~---------- 251 (343)
T KOG0286|consen 221 CVQTFE------GH---------------------------------ESDINSVRFFPSGDAFATGSDDA---------- 251 (343)
T ss_pred eeEeec------cc---------------------------------ccccceEEEccCCCeeeecCCCc----------
Confidence 333221 11 12368888999988777665421
Q ss_pred cCCccEEEEcCCCCeeEEEecc--ccceeeEEEccCCCEEEEEeCCCCEEEEEEee-CCCCCceeeeecCCCCCCCceeE
Q psy4771 224 SGSGRLIQYNPKTKKNKVLIAN--LHFANGVELSADESFVIVAETMSSRVHRYYLK-GPKQGKSEVFIDGLPGLPDNVKR 300 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~~~--~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~-g~~~~~~~~~~~~~~g~Pdgi~~ 300 (337)
.-++|-+..+ .++...... ....+.++|+..|+.|| +-....++.+.+.- +. ...++.. ..+....+.+
T Consensus 252 --tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLf-agy~d~~c~vWDtlk~e---~vg~L~G-HeNRvScl~~ 323 (343)
T KOG0286|consen 252 --TCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLF-AGYDDFTCNVWDTLKGE---RVGVLAG-HENRVSCLGV 323 (343)
T ss_pred --eeEEEeecCC-cEEeeeccCcccCCceeEEEcccccEEE-eeecCCceeEeeccccc---eEEEeec-cCCeeEEEEE
Confidence 1233332221 233222111 23458999999997555 44667777777753 22 1222222 2334556666
Q ss_pred CCCCC
Q psy4771 301 DSKGN 305 (337)
Q Consensus 301 d~dG~ 305 (337)
.+||.
T Consensus 324 s~DG~ 328 (343)
T KOG0286|consen 324 SPDGM 328 (343)
T ss_pred CCCCc
Confidence 66665
No 118
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.59 E-value=0.18 Score=43.14 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=63.3
Q ss_pred CccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCC--CCE
Q psy4771 194 PNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETM--SSR 270 (337)
Q Consensus 194 pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~--~~~ 270 (337)
..+++..|+|+ +.+.... ....+..||.+...+..+. -...|.|.++|+|++|.++..+ .+.
T Consensus 62 I~~~~WsP~g~~favi~g~-------------~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGS-------------MPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD 126 (194)
T ss_pred eEEEEECcCCCEEEEEEcc-------------CCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE
Confidence 78999999986 4444321 1226666666533332222 2356889999999999888755 356
Q ss_pred EEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 271 VHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 271 I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
|..++.+. .+.+..........++.++||+++++....
T Consensus 127 l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 127 LEFWDVRK-----KKKISTFEHSDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred EEEEECCC-----CEEeeccccCcEEEEEEcCCCCEEEEEEec
Confidence 88888652 222222122236789999999988877543
No 119
>KOG2055|consensus
Probab=96.57 E-value=0.082 Score=49.84 Aligned_cols=152 Identities=14% Similarity=0.204 Sum_probs=87.8
Q ss_pred ccCCcceEEECCCC-cEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc---cccceeeeccc
Q psy4771 110 QCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG---QTEQLISMDTE 185 (337)
Q Consensus 110 ~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~---~~~~v~~~~~~ 185 (337)
.-+...+++|+++| .||++..+..|+.+|.................| ..++.+.+|.++ +..+|..+-+.
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~g------ts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHG------TSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccce------eeeeecCCCceEEeccCcceEEEecc
Confidence 34667799999999 667665445599999876654433322122222 346777888887 44455555431
Q ss_pred ---cCCC---C-------CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeE
Q psy4771 186 ---IDGA---K-------PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGV 252 (337)
Q Consensus 186 ---~~~~---~-------~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gi 252 (337)
+.+. + ....+++.+.+|+.|..-.+... .+. ..+.+-++-.||+--|.. ...+.++..+
T Consensus 417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~-kna-lrLVHvPS~TVFsNfP~~------n~~vg~vtc~ 488 (514)
T KOG2055|consen 417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK-KNA-LRLVHVPSCTVFSNFPTS------NTKVGHVTCM 488 (514)
T ss_pred chhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc-ccc-eEEEeccceeeeccCCCC------CCcccceEEE
Confidence 1111 1 13467888888877543222211 011 122344555555533321 2346688999
Q ss_pred EEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 253 ELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 253 a~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
+|+|.+.++-|.+. .++|..|.+
T Consensus 489 aFSP~sG~lAvGNe-~grv~l~kL 511 (514)
T KOG2055|consen 489 AFSPNSGYLAVGNE-AGRVHLFKL 511 (514)
T ss_pred EecCCCceEEeecC-CCceeeEee
Confidence 99999887777764 456666654
No 120
>KOG0303|consensus
Probab=96.48 E-value=0.19 Score=46.68 Aligned_cols=149 Identities=14% Similarity=0.213 Sum_probs=91.8
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEecc
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISM 150 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~ 150 (337)
.+.|.+...++.|.-|+-++...+..+. ....-..+.|+.+|.++++... ..|+.+|+.++++..-..
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali~l~----------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~- 212 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALITLD----------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV- 212 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceeeecC----------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-
Confidence 5566666777878888765544443331 2234568999999999888655 359999998887655442
Q ss_pred ccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEE
Q psy4771 151 DTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLI 230 (337)
Q Consensus 151 ~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~ 230 (337)
...| ..+.-+.+-.+|.++.|-.+.- ..-.+.
T Consensus 213 --~heG-----------------------------------~k~~Raifl~~g~i~tTGfsr~-----------seRq~a 244 (472)
T KOG0303|consen 213 --AHEG-----------------------------------AKPARAIFLASGKIFTTGFSRM-----------SERQIA 244 (472)
T ss_pred --cccC-----------------------------------CCcceeEEeccCceeeeccccc-----------ccccee
Confidence 1222 2244455666777555544321 011333
Q ss_pred EEcCCCCeeEEEeccccceeeEEE---ccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 231 QYNPKTKKNKVLIANLHFANGVEL---SADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 231 ~~d~~~~~~~~~~~~~~~p~gia~---~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
..|+++-+.-.....+...|||-+ ++|.+.||++-.+.+.|.-|.+...
T Consensus 245 Lwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 245 LWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 444443322233344555677653 5888899999999999999988653
No 121
>KOG1539|consensus
Probab=96.48 E-value=0.49 Score=47.96 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=103.6
Q ss_pred eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEE-EcCCCeEEEEec
Q psy4771 71 HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKV-NVTTGQTEQLIS 149 (337)
Q Consensus 71 ~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~v-d~~~g~~~~l~~ 149 (337)
-++..+.+..+|.|-+++.........+|.. ....+...|+++|.-+++.|+....|+.++ |.+++....-.+
T Consensus 459 CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~------~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~ 532 (910)
T KOG1539|consen 459 CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS------PAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR 532 (910)
T ss_pred cCceEEEeccCCeEEEEEcccCeeecccccC------ccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec
Confidence 4677778999999999987443333344421 122244679999999999999777886554 544333211111
Q ss_pred cccccCCCCCCCCCceeeCCCCCcc----cccceeeeccc-------cCCCCCCCCccEEEcCCCcEEEEcCCCCccCce
Q psy4771 150 MDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTE-------IDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGL 218 (337)
Q Consensus 150 ~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~-------~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~ 218 (337)
-|. -+..+.....-.++ .+-+|..++.. +.| -.+..|++++++||+..++-..
T Consensus 533 -----l~~---~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-h~nritd~~FS~DgrWlisasm------- 596 (910)
T KOG1539|consen 533 -----LGS---SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-HGNRITDMTFSPDGRWLISASM------- 596 (910)
T ss_pred -----cCC---CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-cccceeeeEeCCCCcEEEEeec-------
Confidence 111 01222222211221 33355544432 222 1356899999999985544432
Q ss_pred eeeeecCCccEEEEcCCCCeeEEEeccc---cceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 219 FEGLTSGSGRLIQYNPKTKKNKVLIANL---HFANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 219 ~~~~~~~~G~v~~~d~~~~~~~~~~~~~---~~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
++.|..+|..++.. .+++ .-+..+.++|+|++|-.+-.+.+.|+-+.-
T Consensus 597 -------D~tIr~wDlpt~~l---ID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 597 -------DSTIRTWDLPTGTL---IDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred -------CCcEEEEeccCcce---eeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 45788888777653 3333 234678899999998888888777776653
No 122
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.44 E-value=0.45 Score=46.79 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=45.3
Q ss_pred CCccEEEEcCCCCeeEEEecccc--------ce---eeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCC
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANLH--------FA---NGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPG 293 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~~--------~p---~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g 293 (337)
..|.|+.+|..+|+..--.+... .| ..+++ .++.||+.+ ..+.|+.++.+.++..-...+......
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~-~dG~l~ald~~tG~~lW~~~~~~~~~a 440 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGA-ADGYFRAFDATTGKELWKFRTPSGIQA 440 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEEC-CCCeEEEEECCCCceeeEEECCCCceE
Confidence 46788888888887532221110 11 12333 345788877 467899998754322111111111111
Q ss_pred CCCceeECCCCCEEEEecCC
Q psy4771 294 LPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 294 ~Pdgi~~d~dG~l~va~~~~ 313 (337)
-| +....+|++||+...+
T Consensus 441 ~P--~~~~~~g~~yv~~~~g 458 (488)
T cd00216 441 TP--MTYEVNGKQYVGVMVG 458 (488)
T ss_pred cC--EEEEeCCEEEEEEEec
Confidence 12 3335579999999777
No 123
>KOG2139|consensus
Probab=96.37 E-value=0.21 Score=45.99 Aligned_cols=148 Identities=19% Similarity=0.202 Sum_probs=93.2
Q ss_pred cceEEECCCCcEEEEECCC--cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 114 PLGIKFDKNGALHVADAYF--GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~--gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
...|...+||..+++.+.. .|+..|+++|.-..+... .+
T Consensus 198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~---------------------------------------gl 238 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK---------------------------------------GL 238 (445)
T ss_pred eeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc---------------------------------------CC
Confidence 4579999999888886653 388888888876666521 23
Q ss_pred CCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 192 QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
....-+..+|||..+|+..-.. .=+|+.-+ +....+...-+-..-.+-+++|+|++|.++-.+..+|
T Consensus 239 gg~slLkwSPdgd~lfaAt~da------------vfrlw~e~-q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 239 GGFSLLKWSPDGDVLFAATCDA------------VFRLWQEN-QSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRL 305 (445)
T ss_pred CceeeEEEcCCCCEEEEecccc------------eeeeehhc-ccceecceeccCCceeeeeecCCCCEEEEEEcCCceE
Confidence 3455678899998665543210 00333211 1122222232333667889999999999999999999
Q ss_pred EEEEeeCCC---C--C---ceeeeec--------C---CCCCCCceeECCCCCEEEEecCC
Q psy4771 272 HRYYLKGPK---Q--G---KSEVFID--------G---LPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 272 ~~~~~~g~~---~--~---~~~~~~~--------~---~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
++...++.- . + .....+| + .-|-+.-|+-|+.|...+..+.+
T Consensus 306 ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 306 YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 998886521 0 0 1122222 0 12347789999999877777766
No 124
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.35 E-value=0.15 Score=45.52 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=39.4
Q ss_pred EEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCe--eEEEeccccceeeEEEccCCCEEEEEeC
Q psy4771 197 VTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK--NKVLIANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 197 v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyva~~ 266 (337)
-++++||. ||.|+...+ ...|-|=.||...+- +.......-.|+.+.+.+||+++.|++.
T Consensus 119 Gvfs~dG~~LYATEndfd----------~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 119 GVFSPDGRLLYATENDFD----------PNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred cccCCCCcEEEeecCCCC----------CCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 44788997 888887643 233555555544321 2222333457999999999999999886
No 125
>PTZ00420 coronin; Provisional
Probab=96.35 E-value=1.3 Score=44.27 Aligned_cols=151 Identities=9% Similarity=0.030 Sum_probs=84.6
Q ss_pred ccEEEe-e--CCeEEEEecCcEEEEEeCC--ce--eE----EEecCccccCccccCccCCcceEEECCCCc-EEEEECCC
Q psy4771 65 PEAVVK-H--KGDLYMGVDGGHILKLSGG--KL--VP----VVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAYF 132 (337)
Q Consensus 65 P~~i~~-~--~g~ly~d~~~g~I~~~~~~--~~--~~----~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~~ 132 (337)
-.++++ . +..|.+...++.|..|+.. .. .. +..+. ........++++|++. ++++-+..
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~---------gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK---------GHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee---------cCCCcEEEEEECCCCCeEEEEEeCC
Confidence 345566 2 3456688889988888752 11 10 11111 1224467899999985 44443333
Q ss_pred -cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCC
Q psy4771 133 -GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS 211 (337)
Q Consensus 133 -gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~ 211 (337)
.|...|..+++...-.. . ......++++++|.+.++...
T Consensus 148 gtIrIWDl~tg~~~~~i~----~------------------------------------~~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQIN----M------------------------------------PKKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred CeEEEEECCCCcEEEEEe----c------------------------------------CCcEEEEEECCCCCEEEEEec
Confidence 47778887665332211 0 123578899999987765432
Q ss_pred CCccCceeeeeecCCccEEEEcCCCCeeEEEeccccce---ee---EEEccCCCEEEEEeCCC---CEEEEEEeeC
Q psy4771 212 TKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA---NG---VELSADESFVIVAETMS---SRVHRYYLKG 278 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p---~g---ia~~~dg~~lyva~~~~---~~I~~~~~~g 278 (337)
++.|..+|+.+++...-..+.... .. ..+++|++.|..+-... +.|..+++..
T Consensus 188 --------------D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 188 --------------GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred --------------CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 347888888877653322221111 11 12357877666655443 3687788753
No 126
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.33 E-value=0.4 Score=45.18 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=55.4
Q ss_pred CCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC
Q psy4771 122 NGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS 201 (337)
Q Consensus 122 ~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~ 201 (337)
++.+|++.....++.+|.++|+...-.. .......+++
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~-----------------------------------------~~~~~~p~~~- 278 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRD-----------------------------------------ASSYQGPAVD- 278 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeec-----------------------------------------cCCccCceEe-
Confidence 4688988765669999998886544321 0112233333
Q ss_pred CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecccc--ceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 202 DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLH--FANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 202 ~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~--~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
++++|+++. +|.|+.+|.++|+..--...+. .....++ .++.||+.+. .+.|+.++.+.
T Consensus 279 ~~~vyv~~~---------------~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~-~G~l~~~d~~t 339 (377)
T TIGR03300 279 DNRLYVTDA---------------DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDF-EGYLHWLSRED 339 (377)
T ss_pred CCEEEEECC---------------CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeC-CCEEEEEECCC
Confidence 467887763 3578888887776432111111 1111122 2447888774 46788888653
No 127
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.33 E-value=0.19 Score=47.78 Aligned_cols=111 Identities=11% Similarity=0.160 Sum_probs=68.0
Q ss_pred cCccCCcceEEECCCCc-EEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeecccc
Q psy4771 108 EQQCGRPLGIKFDKNGA-LHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEI 186 (337)
Q Consensus 108 ~~~~~~P~Gl~~d~~G~-lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~ 186 (337)
++.+++-..+.++++|. +.|++....++.+|.++|+++.+-.+
T Consensus 398 e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS------------------------------------ 441 (668)
T COG4946 398 EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS------------------------------------ 441 (668)
T ss_pred eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc------------------------------------
Confidence 35567777899999996 66665334599999999988777542
Q ss_pred CCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeC
Q psy4771 187 DGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 187 ~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~ 266 (337)
.-....+++++++++...=..... .+ .-.|..+|.+++++-.+...-.+-..=|++||++.||....
T Consensus 442 ---~~~lItdf~~~~nsr~iAYafP~g----y~------tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 442 ---EYGLITDFDWHPNSRWIAYAFPEG----YY------TQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred ---ccceeEEEEEcCCceeEEEecCcc----ee------eeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 122367888888876321111111 11 11455566666655433333333344588999999998764
Q ss_pred C
Q psy4771 267 M 267 (337)
Q Consensus 267 ~ 267 (337)
.
T Consensus 509 R 509 (668)
T COG4946 509 R 509 (668)
T ss_pred c
Confidence 3
No 128
>KOG1215|consensus
Probab=96.31 E-value=0.2 Score=52.98 Aligned_cols=176 Identities=15% Similarity=0.215 Sum_probs=109.5
Q ss_pred CCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-EEEEEcCCCeEEEEe
Q psy4771 72 KGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-LYKVNVTTGQTEQLI 148 (337)
Q Consensus 72 ~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v~~vd~~~g~~~~l~ 148 (337)
++.+| ++....+|.+............+ .....|.|+++|--+ ++|.+|.... +...+.++.....++
T Consensus 448 ~~~i~~~d~~~~~i~~~~~~~~~~~~~~~---------~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~ 518 (877)
T KOG1215|consen 448 NNRIYWADLSDEKICRASQDGSSECELCG---------DGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLV 518 (877)
T ss_pred CCEEEEEeccCCeEeeeccCCCccceEec---------cCccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEE
Confidence 55666 89989988887652221111111 233568999999876 9999997755 444454444434444
Q ss_pred ccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCCccCceeeeeecCCc
Q psy4771 149 SMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTKYKSGLFEGLTSGSG 227 (337)
Q Consensus 149 ~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~~~~~~~~~~~~~~G 227 (337)
.. .+..|..+++++ .|.+|++|+....
T Consensus 519 ~~---------------------------------------~l~~~r~~~v~p~~g~~~wtd~~~~~------------- 546 (877)
T KOG1215|consen 519 SK---------------------------------------DLDLPRSIAVDPEKGLMFWTDWGQPP------------- 546 (877)
T ss_pred ec---------------------------------------CCCCccceeeccccCeeEEecCCCCc-------------
Confidence 31 235688999999 5779999997420
Q ss_pred cEEEEcCCCCeeEEE-eccccceeeEEEccCCCEEEEEeCCCC-EEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 228 RLIQYNPKTKKNKVL-IANLHFANGVELSADESFVIVAETMSS-RVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~-~~~~~~p~gia~~~dg~~lyva~~~~~-~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
++-+-..+.-..+.+ ..+...|+|++++--.+.+|.++.... .|.+...+|..- ++........|.++++-.+.-
T Consensus 547 ~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r---~~~~~~~~~~p~~~~~~~~~i 623 (877)
T KOG1215|consen 547 RIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNR---RVVDSEDLPHPFGLSVFEDYI 623 (877)
T ss_pred hhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCce---EEeccccCCCceEEEEeccee
Confidence 222222222222222 334789999999977778999999888 788888876422 122222223588998876654
Q ss_pred EEEEec
Q psy4771 306 FLVSLV 311 (337)
Q Consensus 306 l~va~~ 311 (337)
+|.-..
T Consensus 624 yw~d~~ 629 (877)
T KOG1215|consen 624 YWTDWS 629 (877)
T ss_pred EEeecc
Confidence 554443
No 129
>PTZ00421 coronin; Provisional
Probab=96.24 E-value=1.4 Score=43.46 Aligned_cols=150 Identities=13% Similarity=0.138 Sum_probs=87.4
Q ss_pred cEEEe-e-CC-eEEEEecCcEEEEEeC--Cce-----eEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-
Q psy4771 66 EAVVK-H-KG-DLYMGVDGGHILKLSG--GKL-----VPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG- 133 (337)
Q Consensus 66 ~~i~~-~-~g-~ly~d~~~g~I~~~~~--~~~-----~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g- 133 (337)
.++++ . ++ .|.+...++.|..|+. +.. ..+..+. ........+++.+++ +++++-...+
T Consensus 79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~---------gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ---------GHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec---------CCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 35555 2 44 5668888998888874 211 1111111 122446689999985 5666544444
Q ss_pred EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCC
Q psy4771 134 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTK 213 (337)
Q Consensus 134 v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~ 213 (337)
|...|.++++...... + .....+++++.++|.+.++...
T Consensus 150 VrIWDl~tg~~~~~l~------~---------------------------------h~~~V~sla~spdG~lLatgs~-- 188 (493)
T PTZ00421 150 VNVWDVERGKAVEVIK------C---------------------------------HSDQITSLEWNLDGSLLCTTSK-- 188 (493)
T ss_pred EEEEECCCCeEEEEEc------C---------------------------------CCCceEEEEEECCCCEEEEecC--
Confidence 7778887665433221 1 1123678999999987665543
Q ss_pred ccCceeeeeecCCccEEEEcCCCCeeEEEecccc--ceeeEEEccCCCEEEEEeC---CCCEEEEEEee
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLH--FANGVELSADESFVIVAET---MSSRVHRYYLK 277 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~--~p~gia~~~dg~~lyva~~---~~~~I~~~~~~ 277 (337)
+|.|..+|+.+++...-..+.. ....+.+.++++.+..+.. ..+.|..+++.
T Consensus 189 ------------Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 189 ------------DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred ------------CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 4578888887776432222211 2345677777766655432 24678888875
No 130
>KOG0279|consensus
Probab=96.18 E-value=0.87 Score=40.57 Aligned_cols=194 Identities=10% Similarity=0.044 Sum_probs=112.4
Q ss_pred CceeccCcccCccEEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC
Q psy4771 54 AEKLFENEIHGPEAVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY 131 (337)
Q Consensus 54 ~~~~~~g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~ 131 (337)
.++.+.|--.--.+++. .+|... +...++.+..||....+....|- .......++++++|.+-+|+-+.
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~---------GH~~dVlsva~s~dn~qivSGSr 125 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV---------GHTKDVLSVAFSTDNRQIVSGSR 125 (315)
T ss_pred eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEE---------ecCCceEEEEecCCCceeecCCC
Confidence 34444552223345555 566555 88888877778863322222221 12234779999999988888654
Q ss_pred Cc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC-cEEEEc
Q psy4771 132 FG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSD 209 (337)
Q Consensus 132 ~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G-~lyvtd 209 (337)
.. +...+..++..-++.. .+ .-.+.+.+.+.|+. +.++..
T Consensus 126 DkTiklwnt~g~ck~t~~~-----~~---------------------------------~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCKYTIHE-----DS---------------------------------HREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred cceeeeeeecccEEEEEec-----CC---------------------------------CcCcEEEEEEcCCCCCcEEEE
Confidence 33 6666766554444432 11 13467888898875 444444
Q ss_pred CCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeee
Q psy4771 210 SSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFI 288 (337)
Q Consensus 210 ~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~ 288 (337)
.+. ++.|-..|.++-+.+... ..-.+-+-++++|||. +-.+-...+.++-.+++.++. ...+-
T Consensus 168 ~s~-------------DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~--lysl~ 231 (315)
T KOG0279|consen 168 ASW-------------DKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN--LYSLE 231 (315)
T ss_pred ccC-------------CceEEEEccCCcchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCce--eEecc
Confidence 432 236666776665554333 3345778999999995 777666677888888864321 11111
Q ss_pred cCCCCCCCceeECCCCCEEEEecCC
Q psy4771 289 DGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 289 ~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
. .-....+++.++ ++|.+....
T Consensus 232 a--~~~v~sl~fspn-rywL~~at~ 253 (315)
T KOG0279|consen 232 A--FDIVNSLCFSPN-RYWLCAATA 253 (315)
T ss_pred C--CCeEeeEEecCC-ceeEeeccC
Confidence 1 012456777765 466666544
No 131
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.13 E-value=0.77 Score=46.18 Aligned_cols=110 Identities=10% Similarity=-0.018 Sum_probs=62.3
Q ss_pred ccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEE
Q psy4771 195 NSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHR 273 (337)
Q Consensus 195 n~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~ 273 (337)
..-.+++||. ||+....... .+.......+.++.++.++++... ..-.....+++++||++|.+.-. ++|++
T Consensus 400 t~PsWspDG~~lw~v~dg~~~---~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~--g~v~V 472 (591)
T PRK13616 400 TRPSWSLDADAVWVVVDGNTV---VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG--GKVYL 472 (591)
T ss_pred CCceECCCCCceEEEecCcce---EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC--CEEEE
Confidence 3446888864 8887543210 011112345788877777666543 11224788999999999877663 47777
Q ss_pred ---EEeeCCC--CCceeeeecCCCCCCCceeECCCCCEEEEec
Q psy4771 274 ---YYLKGPK--QGKSEVFIDGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 274 ---~~~~g~~--~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
.+.+++. ++....+...+...+..+.--.++.|.|+..
T Consensus 473 a~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~ 515 (591)
T PRK13616 473 AVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRS 515 (591)
T ss_pred EEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEec
Confidence 3323321 2222223333333346677777788777654
No 132
>KOG2106|consensus
Probab=96.07 E-value=1.5 Score=42.27 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=40.4
Q ss_pred ecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
....|+.+++|..+..+..+...-..-+.++++|||.+|-|.. ..+.|+.|.++.
T Consensus 424 Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs-~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 424 GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS-HDNHIYIYRVSA 478 (626)
T ss_pred eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec-CCCeEEEEEECC
Confidence 4567889999988766655555555668899999998777665 457788888763
No 133
>KOG0289|consensus
Probab=96.05 E-value=0.3 Score=45.88 Aligned_cols=144 Identities=17% Similarity=0.148 Sum_probs=85.7
Q ss_pred EEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCC-
Q psy4771 67 AVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTG- 142 (337)
Q Consensus 67 ~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g- 142 (337)
+.++ .||+|| ++..++.+-.|+......+++|+.. -+--..|.|..+|-..++....+ |..+|...-
T Consensus 352 s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh---------t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH---------TGPVKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred EeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC---------CCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 4445 588888 8888886666665433345555421 23346899998884444444455 888886421
Q ss_pred eEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeee
Q psy4771 143 QTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 143 ~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~ 222 (337)
.+.++.- . .....+.+.+|..|.....-.. .
T Consensus 423 n~kt~~l----~-----------------------------------~~~~v~s~~fD~SGt~L~~~g~-~--------- 453 (506)
T KOG0289|consen 423 NFKTIQL----D-----------------------------------EKKEVNSLSFDQSGTYLGIAGS-D--------- 453 (506)
T ss_pred ccceeec----c-----------------------------------ccccceeEEEcCCCCeEEeecc-e---------
Confidence 2222221 0 1224688999998874433322 1
Q ss_pred ecCCccEEEEcCCCCeeEEEe---ccccceeeEEEccCCCEEEEEeCCCCEEEEE
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLI---ANLHFANGVELSADESFVIVAETMSSRVHRY 274 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~---~~~~~p~gia~~~dg~~lyva~~~~~~I~~~ 274 (337)
=+||.++-.+.+.+.+. +.....+|+.|..+. -|++.++..+++++
T Consensus 454 ----l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a--q~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 454 ----LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA--QYLASTSMDAILRL 502 (506)
T ss_pred ----eEEEEEecccccceeeehhhhcccccceeeecccc--eEEeeccchhheEE
Confidence 17888886666654433 334467899998664 56666666676654
No 134
>KOG0278|consensus
Probab=95.95 E-value=0.82 Score=40.17 Aligned_cols=138 Identities=9% Similarity=0.102 Sum_probs=83.1
Q ss_pred CCeEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEec
Q psy4771 72 KGDLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLIS 149 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~ 149 (337)
+..+.++..++.|-.||- ++......+ -..+..+.+.++|+++....+.+|...|+++- ..+..
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~------------~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf--~~lKs 220 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEF------------NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF--GLLKS 220 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEec------------CCCCcceeeccCCCEEEEecCceeEEeccccc--cceee
Confidence 455555566666666664 332221111 23477899999998877754456777777532 12211
Q ss_pred cccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccE
Q psy4771 150 MDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRL 229 (337)
Q Consensus 150 ~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v 229 (337)
. .+|+.+ +.....|+-.+||+-.. .+.+
T Consensus 221 ~---------k~P~nV-----------------------------~SASL~P~k~~fVaGge--------------d~~~ 248 (334)
T KOG0278|consen 221 Y---------KMPCNV-----------------------------ESASLHPKKEFFVAGGE--------------DFKV 248 (334)
T ss_pred c---------cCcccc-----------------------------ccccccCCCceEEecCc--------------ceEE
Confidence 0 023322 33335566678877643 3489
Q ss_pred EEEcCCCCeeEEEe-cc-ccceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 230 IQYNPKTKKNKVLI-AN-LHFANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 230 ~~~d~~~~~~~~~~-~~-~~~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
|+||-.+|+-.... .+ +.--..+.++|||. +|.+-+..+.|.-...
T Consensus 249 ~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 249 YKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQT 296 (334)
T ss_pred EEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEe
Confidence 99999888654442 33 34457899999995 9988877776654443
No 135
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.94 E-value=0.52 Score=46.33 Aligned_cols=79 Identities=10% Similarity=0.043 Sum_probs=45.3
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEec
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLIS 149 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~ 149 (337)
+.++.+|+...+++++.+|..+.+..-++... .............++++..++++|+.+....|+.+|.++|+...-..
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~-~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPK-LPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCC-CCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 46889998878899999987332222111100 00000000001124455444799998765569999999998776553
No 136
>KOG0289|consensus
Probab=95.81 E-value=1.7 Score=40.99 Aligned_cols=143 Identities=12% Similarity=0.202 Sum_probs=82.2
Q ss_pred cceEEECCCCcEEEEECCCcEEEE-EcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCC
Q psy4771 114 PLGIKFDKNGALHVADAYFGLYKV-NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQ 192 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~gv~~v-d~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~ 192 (337)
.+++...+.|.-+++.+..+-|.+ |..+|.....+.. ++ .--
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~----~~---------------------------------s~v 348 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD----ET---------------------------------SDV 348 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee----cc---------------------------------ccc
Confidence 468888888876666555665554 4444443333321 01 011
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccc-cceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANL-HFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~-~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
.....++.|||.|+.+-.. +|.|-.+|.+.+....-..+- .--..|+|+.+| +..++......|
T Consensus 349 ~~ts~~fHpDgLifgtgt~--------------d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V 413 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTP--------------DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSV 413 (506)
T ss_pred eeEEeeEcCCceEEeccCC--------------CceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCeE
Confidence 2467889999998876654 345555665544321111221 223679999888 666667777779
Q ss_pred EEEEeeCCCCCceeeeec-CCCCCCCceeECCCCCEEEEec
Q psy4771 272 HRYYLKGPKQGKSEVFID-GLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 272 ~~~~~~g~~~~~~~~~~~-~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
..+|+.-. .+...+.- ...+ ...+.+|..|.+.+...
T Consensus 414 ~lwDLRKl--~n~kt~~l~~~~~-v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 414 KLWDLRKL--KNFKTIQLDEKKE-VNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEEEehhh--cccceeecccccc-ceeEEEcCCCCeEEeec
Confidence 99998532 23333321 1111 45688898888766663
No 137
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=95.70 E-value=1.1 Score=40.95 Aligned_cols=133 Identities=14% Similarity=0.229 Sum_probs=79.6
Q ss_pred CcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 113 RPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 113 ~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
+.+++..+++|+++|+-.. +.|++||+++|++....... ..+. .. .....+
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~--~~~d-------f~-------------------~~~~~f 196 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK--RNSD-------FT-------------------LPATNF 196 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC--CCCc-------cc-------------------ccCCcE
Confidence 4578999999999988644 34999999999887765421 0000 00 001124
Q ss_pred CCCccEEEc----CCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecccccee--------eEEEccCCC
Q psy4771 192 QIPNSVTVD----SDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFAN--------GVELSADES 259 (337)
Q Consensus 192 ~~pn~v~vd----~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~--------gia~~~dg~ 259 (337)
..-++..+- .+++|-+-|..... ........|+++.+|+.+.+++.+......|. .+..-|+|
T Consensus 197 ~~QHdar~~~~~~~~~~IslFDN~~~~----~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nG- 271 (299)
T PF14269_consen 197 SWQHDARFLNESNDDGTISLFDNANSD----FNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNG- 271 (299)
T ss_pred eeccCCEEeccCCCCCEEEEEcCCCCC----CCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCC-
Confidence 444555555 56666666663210 01123356799999999776654432221222 34455666
Q ss_pred EEEEEeCCCCEEEEEEeeC
Q psy4771 260 FVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 260 ~lyva~~~~~~I~~~~~~g 278 (337)
.++|++....++..|+.+|
T Consensus 272 n~li~~g~~g~~~E~~~~G 290 (299)
T PF14269_consen 272 NVLIGWGNNGRISEFTPDG 290 (299)
T ss_pred CEEEecCCCceEEEECCCC
Confidence 4888888888888887665
No 138
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.62 E-value=0.057 Score=49.74 Aligned_cols=99 Identities=22% Similarity=0.180 Sum_probs=61.7
Q ss_pred CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCC---------EEEE
Q psy4771 203 GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSS---------RVHR 273 (337)
Q Consensus 203 G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~---------~I~~ 273 (337)
.++||.|.... ...++++.+|.+++++.=+.+....++ ++++||++.+|++++.=. -|..
T Consensus 3 ~rvyV~D~~~~----------~~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~ 71 (342)
T PF06433_consen 3 HRVYVQDPVFF----------HMTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEI 71 (342)
T ss_dssp TEEEEEE-GGG----------GSSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEE
T ss_pred cEEEEECCccc----------cccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEE
Confidence 37999998532 124699999999998766666666666 778999999999997522 2333
Q ss_pred EEeeCCCCCceeeeecCC-----CCCCCceeECCCCC-EEEEecCC
Q psy4771 274 YYLKGPKQGKSEVFIDGL-----PGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 274 ~~~~g~~~~~~~~~~~~~-----~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
|+.+.- .-..++.+... -.++..+++..||+ +||....+
T Consensus 72 ~D~~TL-~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP 116 (342)
T PF06433_consen 72 WDTQTL-SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP 116 (342)
T ss_dssp EETTTT-EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS
T ss_pred EecCcC-cccceEecCCcchheecccccceEEccCCcEEEEEccCC
Confidence 443221 01123322211 12467888998997 89988877
No 139
>KOG1273|consensus
Probab=95.50 E-value=1.2 Score=40.44 Aligned_cols=224 Identities=16% Similarity=0.240 Sum_probs=105.8
Q ss_pred cEEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCc-ceEEECCCCcEEEEECC-CcEEEEEcCC
Q psy4771 66 EAVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRP-LGIKFDKNGALHVADAY-FGLYKVNVTT 141 (337)
Q Consensus 66 ~~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P-~Gl~~d~~G~lyVad~~-~gv~~vd~~~ 141 (337)
+++.+ ..|.+. ++..+|+++-||-.+...-..++.. -+| ..+++.++|+..++.+. ..+...|...
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH----------~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAH----------VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcc----------ccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence 44455 455555 9999999999986432211112211 233 48999999988888654 3477777765
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcc-----cccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCc-c
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG-----QTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY-K 215 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~-----~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~-~ 215 (337)
|....-+....+.-+- .+.|.+ +++.+ ..-.++.+.+.. -.-+..|++|.+=.+.+...+ +
T Consensus 97 gs~l~rirf~spv~~~-q~hp~k-----~n~~va~~~~~sp~vi~~s~~~-------h~~Lp~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 97 GSPLKRIRFDSPVWGA-QWHPRK-----RNKCVATIMEESPVVIDFSDPK-------HSVLPKDDDGDLNSSASHGVFDR 163 (405)
T ss_pred CCceeEEEccCcccee-eecccc-----CCeEEEEEecCCcEEEEecCCc-------eeeccCCCccccccccccccccC
Confidence 5433222211111110 122222 11221 111222222100 011112223332222221111 1
Q ss_pred CceeeeeecCCccEEEEcCCCCeeEEEec--cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC----CCCCceeee--
Q psy4771 216 SGLFEGLTSGSGRLIQYNPKTKKNKVLIA--NLHFANGVELSADESFVIVAETMSSRVHRYYLKG----PKQGKSEVF-- 287 (337)
Q Consensus 216 ~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g----~~~~~~~~~-- 287 (337)
.+-+.+.++..|.+..||..+-+...... ....-..|.++..|+++. .++...-|..|++.. ++.+..+.-
T Consensus 164 ~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~li-iNtsDRvIR~ye~~di~~~~r~~e~e~~~K 242 (405)
T KOG1273|consen 164 RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLI-INTSDRVIRTYEISDIDDEGRDGEVEPEHK 242 (405)
T ss_pred CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEE-EecCCceEEEEehhhhcccCccCCcChhHH
Confidence 12233345667899999977654422211 123445788888887554 455556677777652 122222210
Q ss_pred -ecCCCCCC-CceeECCCCCEEEEecCC
Q psy4771 288 -IDGLPGLP-DNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 288 -~~~~~g~P-dgi~~d~dG~l~va~~~~ 313 (337)
-+-..-.+ ..++++.+|-+.+|....
T Consensus 243 ~qDvVNk~~Wk~ccfs~dgeYv~a~s~~ 270 (405)
T KOG1273|consen 243 LQDVVNKLQWKKCCFSGDGEYVCAGSAR 270 (405)
T ss_pred HHHHHhhhhhhheeecCCccEEEecccc
Confidence 01000112 357788888666665543
No 140
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.48 E-value=1.4 Score=43.77 Aligned_cols=78 Identities=13% Similarity=0.085 Sum_probs=45.0
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccC-cc-CCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEE
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQ-QC-GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~-~~-~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l 147 (337)
+.++.+|+...+++|+.+|..+.+.+-++........... .+ ....|+++. ++++|++.....++.+|.++|++..-
T Consensus 67 v~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 67 VVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred EECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCCCEEEEEECCCCCEEee
Confidence 4689999877788899998743322222110000000000 00 012356664 46899987656799999999987654
Q ss_pred e
Q psy4771 148 I 148 (337)
Q Consensus 148 ~ 148 (337)
.
T Consensus 146 ~ 146 (527)
T TIGR03075 146 K 146 (527)
T ss_pred c
Confidence 3
No 141
>KOG1274|consensus
Probab=95.41 E-value=1.4 Score=45.24 Aligned_cols=144 Identities=12% Similarity=0.148 Sum_probs=84.3
Q ss_pred EeeCCeEEEEecCcEEEEEeC--Ccee-EEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCeE
Q psy4771 69 VKHKGDLYMGVDGGHILKLSG--GKLV-PVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQT 144 (337)
Q Consensus 69 ~~~~g~ly~d~~~g~I~~~~~--~~~~-~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~ 144 (337)
+...+.+.+++.++.|.++.- +... .++.|. -.-..++++.+|...++-+. ..|-.++.++...
T Consensus 63 a~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft------------lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~ 130 (933)
T KOG1274|consen 63 ACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFT------------LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ 130 (933)
T ss_pred eecccceEEeeccceEEEeeCCCCCccceeeeee------------ccceEEEEecCCcEEEeecCceeEEEEeccccch
Confidence 333444447888888888753 2211 122221 11347899999977777543 4566676654433
Q ss_pred EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeec
Q psy4771 145 EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTS 224 (337)
Q Consensus 145 ~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~ 224 (337)
..... ...+ ..-++..+|+|++..+.+
T Consensus 131 ~~~lr---gh~a------------------------------------pVl~l~~~p~~~fLAvss-------------- 157 (933)
T KOG1274|consen 131 EKVLR---GHDA------------------------------------PVLQLSYDPKGNFLAVSS-------------- 157 (933)
T ss_pred heeec---ccCC------------------------------------ceeeeeEcCCCCEEEEEe--------------
Confidence 33222 1122 135778888887654433
Q ss_pred CCccEEEEcCCCCeeEEEecccc---------ceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANLH---------FANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~~---------~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
.+|.|..+|.+++.......++. .-.-++|+|++.++.+.-. .+.|..|+.++
T Consensus 158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-DNTVKVYSRKG 219 (933)
T ss_pred cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc-CCeEEEEccCC
Confidence 35788888877776544443321 2245789999766665543 67999998876
No 142
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.41 E-value=0.44 Score=44.89 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=50.8
Q ss_pred cEEEEcCCCCeeEEEe-------ccccceeeEEEc--c-CCCEEEEEeCCCCEEEEEEeeCCCCCc-----eeeeecCCC
Q psy4771 228 RLIQYNPKTKKNKVLI-------ANLHFANGVELS--A-DESFVIVAETMSSRVHRYYLKGPKQGK-----SEVFIDGLP 292 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~-------~~~~~p~gia~~--~-dg~~lyva~~~~~~I~~~~~~g~~~~~-----~~~~~~~~~ 292 (337)
++|++|++++.++.+. ..+.-+.|+|+- + +|+...+.....+++..|.+.....+. .+.|. ++
T Consensus 130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~ 207 (381)
T PF02333_consen 130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VG 207 (381)
T ss_dssp EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---S
T ss_pred EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CC
Confidence 6889998877765443 234558899985 2 454333334445789999886322222 23332 45
Q ss_pred CCCCceeECCC-CCEEEEecCC
Q psy4771 293 GLPDNVKRDSK-GNFLVSLVCP 313 (337)
Q Consensus 293 g~Pdgi~~d~d-G~l~va~~~~ 313 (337)
..+.|+++|.+ |.||++.-..
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~~ 229 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEEDV 229 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETTT
T ss_pred CcceEEEEecccCCEEEecCcc
Confidence 67999999976 6799988554
No 143
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.36 E-value=0.11 Score=48.84 Aligned_cols=126 Identities=17% Similarity=0.197 Sum_probs=60.4
Q ss_pred eEEECCCC-cEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCC
Q psy4771 116 GIKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIP 194 (337)
Q Consensus 116 Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~p 194 (337)
|..+.++. .+|.......|+++|.++++.+.+... |...+ .-
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~-----------p~~~~--------------------------g~ 127 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV-----------PDDWK--------------------------GY 127 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-------------TTEE--------------------------EE
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC-----------Ccccc--------------------------cc
Confidence 44555555 665554457799999999888777652 11111 00
Q ss_pred ccEEEcCCCcEEEEcCCCC--c---c--Cceeee-eecCCccEEEEcCCCCeeEEEeccccceeeEEEcc-CCCEEEEEe
Q psy4771 195 NSVTVDSDGMVYWSDSSTK--Y---K--SGLFEG-LTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSA-DESFVIVAE 265 (337)
Q Consensus 195 n~v~vd~~G~lyvtd~~~~--~---~--~~~~~~-~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg~~lyva~ 265 (337)
-...+++|++.++.....+ + . .....+ ...+..+|+++|.++|+.+++...-.+-+=+.++| |...|.+|-
T Consensus 128 gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCH 207 (386)
T PF14583_consen 128 GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCH 207 (386)
T ss_dssp EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE
T ss_pred cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEec
Confidence 1122344565443322111 1 0 011111 24566799999999999988887655555555664 333444444
Q ss_pred CC-----CCEEEEEEeeC
Q psy4771 266 TM-----SSRVHRYYLKG 278 (337)
Q Consensus 266 ~~-----~~~I~~~~~~g 278 (337)
.+ ..||+.++.+|
T Consensus 208 EGpw~~Vd~RiW~i~~dg 225 (386)
T PF14583_consen 208 EGPWDLVDQRIWTINTDG 225 (386)
T ss_dssp -S-TTTSS-SEEEEETTS
T ss_pred cCCcceeceEEEEEEcCC
Confidence 33 24666666655
No 144
>PRK13684 Ycf48-like protein; Provisional
Probab=95.28 E-value=2.5 Score=39.35 Aligned_cols=22 Identities=5% Similarity=0.063 Sum_probs=13.6
Q ss_pred ChhhHHHHHHHHHHHHHHHhcC
Q psy4771 1 MAFFRNFFISVVVGIVAITFYP 22 (337)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (337)
||++.|++--++|++++++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (334)
T PRK13684 1 MKRLLKSLKNLLLLLALLLVLS 22 (334)
T ss_pred ChhHhHHHHHHHHHHHHHhhcc
Confidence 8887776666655555554444
No 145
>KOG0263|consensus
Probab=95.22 E-value=0.64 Score=46.61 Aligned_cols=113 Identities=13% Similarity=0.131 Sum_probs=73.6
Q ss_pred CCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
....++.|.|+.+...+.+. +-++..|..+|...++.. | -
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~------G---------------------------------H 576 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT------G---------------------------------H 576 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec------C---------------------------------C
Confidence 44557888888644433322 337777776676555543 1 1
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE-EEeccccceeeEEEccCCCEEEEEeCCCC
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK-VLIANLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
-.....+++.++|+...+-. .+|.|..+|..+++.. .+.+.-..-+.+.|+.||. ++|+....+
T Consensus 577 ~~~V~al~~Sp~Gr~LaSg~--------------ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~Dn 641 (707)
T KOG0263|consen 577 KGPVTALAFSPCGRYLASGD--------------EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADN 641 (707)
T ss_pred CCceEEEEEcCCCceEeecc--------------cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCC-EEEecCCCC
Confidence 12357889999987544332 3568888888776542 2334444567899999995 888888889
Q ss_pred EEEEEEeeC
Q psy4771 270 RVHRYYLKG 278 (337)
Q Consensus 270 ~I~~~~~~g 278 (337)
.|..+|+..
T Consensus 642 sV~lWD~~~ 650 (707)
T KOG0263|consen 642 SVRLWDLTK 650 (707)
T ss_pred eEEEEEchh
Confidence 999998753
No 146
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.21 E-value=0.11 Score=47.93 Aligned_cols=111 Identities=18% Similarity=0.244 Sum_probs=68.1
Q ss_pred CcEEEEECC-----CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccE
Q psy4771 123 GALHVADAY-----FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSV 197 (337)
Q Consensus 123 G~lyVad~~-----~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v 197 (337)
.++||.|.. .+++.+|.+.+++.-.+. ....-.+
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~-----------------------------------------~g~~~~~ 41 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMID-----------------------------------------TGFLGNV 41 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEE-----------------------------------------EESSEEE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEee-----------------------------------------cccCCce
Confidence 379999863 248889988887654443 1123347
Q ss_pred EEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE--EEec------cccceeeEEEccCCCEEEEEeCC-
Q psy4771 198 TVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK--VLIA------NLHFANGVELSADESFVIVAETM- 267 (337)
Q Consensus 198 ~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~--~~~~------~~~~p~gia~~~dg~~lyva~~~- 267 (337)
++++||+ +|+++..... ..-.+..--|-.||.++-+.+ +.+. .+..++-.+++.||+++||.+..
T Consensus 42 ~~spdgk~~y~a~T~~sR-----~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP 116 (342)
T PF06433_consen 42 ALSPDGKTIYVAETFYSR-----GTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP 116 (342)
T ss_dssp EE-TTSSEEEEEEEEEEE-----TTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS
T ss_pred eECCCCCEEEEEEEEEec-----cccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCC
Confidence 7899986 8887754210 000122235778888776432 2222 13567889999999999999976
Q ss_pred CCEEEEEEeeCC
Q psy4771 268 SSRVHRYYLKGP 279 (337)
Q Consensus 268 ~~~I~~~~~~g~ 279 (337)
...|.++|+...
T Consensus 117 a~SVtVVDl~~~ 128 (342)
T PF06433_consen 117 ATSVTVVDLAAK 128 (342)
T ss_dssp SEEEEEEETTTT
T ss_pred CCeEEEEECCCC
Confidence 467999998654
No 147
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.20 E-value=0.1 Score=32.16 Aligned_cols=42 Identities=21% Similarity=0.127 Sum_probs=29.1
Q ss_pred cCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeEC
Q psy4771 256 ADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRD 301 (337)
Q Consensus 256 ~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d 301 (337)
||+++|||++...++|..++.... .....+. ....|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~---~~~~~i~-vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN---KVIATIP-VGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC---eEEEEEE-CCCCCceEEeC
Confidence 588899999999999999987432 1111122 23458888874
No 148
>KOG0271|consensus
Probab=95.19 E-value=0.82 Score=42.47 Aligned_cols=73 Identities=21% Similarity=0.203 Sum_probs=50.7
Q ss_pred CCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 192 QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
...|.+.++|||+...+-+..+ .|--+|..+|+...... ....-.-||++.|- +|.|+-+...+
T Consensus 368 ~lVn~V~fSPd~r~IASaSFDk--------------SVkLW~g~tGk~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsT 432 (480)
T KOG0271|consen 368 ALVNHVSFSPDGRYIASASFDK--------------SVKLWDGRTGKFLASFRGHVAAVYQVAWSADS-RLLVSGSKDST 432 (480)
T ss_pred hheeeEEECCCccEEEEeeccc--------------ceeeeeCCCcchhhhhhhccceeEEEEeccCc-cEEEEcCCCce
Confidence 3479999999987555444322 44444555666533333 34556789999887 59999999999
Q ss_pred EEEEEeeCC
Q psy4771 271 VHRYYLKGP 279 (337)
Q Consensus 271 I~~~~~~g~ 279 (337)
+.++++...
T Consensus 433 LKvw~V~tk 441 (480)
T KOG0271|consen 433 LKVWDVRTK 441 (480)
T ss_pred EEEEEeeee
Confidence 999998643
No 149
>PTZ00420 coronin; Provisional
Probab=95.16 E-value=3.2 Score=41.55 Aligned_cols=62 Identities=5% Similarity=-0.046 Sum_probs=39.7
Q ss_pred eEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCCCeEE
Q psy4771 74 DLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTGQTE 145 (337)
Q Consensus 74 ~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~ 145 (337)
.+. +...++.|..||..+......+. .......+.++++|.++++.... .|..+|+.+++..
T Consensus 139 ~iLaSgS~DgtIrIWDl~tg~~~~~i~----------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIENEKRAFQIN----------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred eEEEEEeCCCeEEEEECCCCcEEEEEe----------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 344 66778888888863322222221 11346789999999888875443 4888898877543
No 150
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.13 E-value=0.66 Score=41.65 Aligned_cols=171 Identities=17% Similarity=0.174 Sum_probs=82.2
Q ss_pred CCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeC-CCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD-SDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~-~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
-.|+-+.+-+||++.|.-+ .||. ..|+-|..+.-.. . .-|.-+-+| .+|++++...+-. ...
T Consensus 162 iGpHev~lm~DGrtlvvan-GGIe-thpdfgR~~lNld------s---MePSlvlld~atG~liekh~Lp~------~l~ 224 (366)
T COG3490 162 IGPHEVTLMADGRTLVVAN-GGIE-THPDFGRTELNLD------S---MEPSLVLLDAATGNLIEKHTLPA------SLR 224 (366)
T ss_pred cCcceeEEecCCcEEEEeC-Ccee-cccccCccccchh------h---cCccEEEEeccccchhhhccCch------hhh
Confidence 4599999999996665531 2222 2222221111110 0 124444444 4555542211100 002
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-------ccccceeeEEEccCCCEEEE
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-------ANLHFANGVELSADESFVIV 263 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-------~~~~~p~gia~~~dg~~lyv 263 (337)
..+...+++++||++|+...-..-++-.- -|.-.-..++.++.+. .--.+--.||+..+...+-+
T Consensus 225 ~lSiRHld~g~dgtvwfgcQy~G~~~d~p--------pLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~l 296 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFGCQYRGPRNDLP--------PLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVAL 296 (366)
T ss_pred hcceeeeeeCCCCcEEEEEEeeCCCccCC--------cceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEE
Confidence 34568899999999999886432111000 0111111122222111 01124457888866667888
Q ss_pred EeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 264 AETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 264 a~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+....|+...++.+.+..-.... ++. .-|++.+..| +-|+...+
T Consensus 297 TSP~GN~~vi~da~tG~vv~~a~----l~d-aaGva~~~~g-f~vssg~G 340 (366)
T COG3490 297 TSPRGNRAVIWDAATGAVVSEAA----LPD-AAGVAAAKGG-FAVSSGQG 340 (366)
T ss_pred ecCCCCeEEEEEcCCCcEEeccc----ccc-cccceeccCc-eEEecCCc
Confidence 88778887777765432211111 221 3466665443 55555554
No 151
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=95.12 E-value=0.086 Score=32.96 Aligned_cols=41 Identities=22% Similarity=0.471 Sum_probs=28.2
Q ss_pred CcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE-EEeccccceeeEEEcc
Q psy4771 203 GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK-VLIANLHFANGVELSA 256 (337)
Q Consensus 203 G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~ 256 (337)
|+||+||...+. .|.+.+.++...+ .+...+..|+|||+++
T Consensus 1 ~~iYWtD~~~~~-------------~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDP-------------SIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTE-------------EEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCc-------------EEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 579999987431 5555555544433 4456799999999974
No 152
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=95.04 E-value=0.059 Score=33.70 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=30.1
Q ss_pred EEEEEeCCCC-EEEEEEeeCCCCCceeeeecCCCCCCCceeECC
Q psy4771 260 FVIVAETMSS-RVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS 302 (337)
Q Consensus 260 ~lyva~~~~~-~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~ 302 (337)
+||.+|...+ .|.+.+++|.. .++++...-..|.||++|.
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence 6999999999 99999998753 3444433334599999984
No 153
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.85 E-value=2.8 Score=39.50 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=44.4
Q ss_pred eeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEe
Q psy4771 70 KHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLI 148 (337)
Q Consensus 70 ~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~ 148 (337)
..++.+|+...+|+|+.++.+....+ +...+.+ ....+..|... .+|+||+.+....++.+|..+|+.....
T Consensus 66 ~~dg~v~~~~~~G~i~A~d~~~g~~~--W~~~~~~--~~~~~~~~~~~---~~G~i~~g~~~g~~y~ld~~~G~~~W~~ 137 (370)
T COG1520 66 DGDGTVYVGTRDGNIFALNPDTGLVK--WSYPLLG--AVAQLSGPILG---SDGKIYVGSWDGKLYALDASTGTLVWSR 137 (370)
T ss_pred eeCCeEEEecCCCcEEEEeCCCCcEE--ecccCcC--cceeccCceEE---eCCeEEEecccceEEEEECCCCcEEEEE
Confidence 37899998899999999998544322 1111110 00122223332 3899999975444999998777766554
No 154
>PLN00181 protein SPA1-RELATED; Provisional
Probab=94.48 E-value=7.4 Score=40.78 Aligned_cols=173 Identities=12% Similarity=0.101 Sum_probs=90.1
Q ss_pred CeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCCc-EEEEEcCCCeEEEEecc
Q psy4771 73 GDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYFG-LYKVNVTTGQTEQLISM 150 (337)
Q Consensus 73 g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~g-v~~vd~~~g~~~~l~~~ 150 (337)
..|.+...+|.|..|+..+...+..+. ...+.-.++++++ +|.++++-...+ |...|..++.......
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~~~~---------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~- 615 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVTEMK---------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK- 615 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEEEec---------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-
Confidence 455577778888888764333332221 1224467899986 677776655544 7777776554322211
Q ss_pred ccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEc-CCCcEEEEcCCCCccCceeeeeecCCccE
Q psy4771 151 DTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVD-SDGMVYWSDSSTKYKSGLFEGLTSGSGRL 229 (337)
Q Consensus 151 ~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd-~~G~lyvtd~~~~~~~~~~~~~~~~~G~v 229 (337)
. ......+.+. ++|..+++.. .+|.|
T Consensus 616 -----~----------------------------------~~~v~~v~~~~~~g~~latgs--------------~dg~I 642 (793)
T PLN00181 616 -----T----------------------------------KANICCVQFPSESGRSLAFGS--------------ADHKV 642 (793)
T ss_pred -----c----------------------------------CCCeEEEEEeCCCCCEEEEEe--------------CCCeE
Confidence 0 0123445553 3465444433 24577
Q ss_pred EEEcCCCCee--EEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCC----CceeeeecCCCCCCCceeECCC
Q psy4771 230 IQYNPKTKKN--KVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQ----GKSEVFIDGLPGLPDNVKRDSK 303 (337)
Q Consensus 230 ~~~d~~~~~~--~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~----~~~~~~~~~~~g~Pdgi~~d~d 303 (337)
..+|..++.. ..+...-..-..+++. +++.| ++-...+.|..+++..... .....+.. ......-++++++
T Consensus 643 ~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~l-vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g-h~~~i~~v~~s~~ 719 (793)
T PLN00181 643 YYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTL-VSSSTDNTLKLWDLSMSISGINETPLHSFMG-HTNVKNFVGLSVS 719 (793)
T ss_pred EEEECCCCCccceEecCCCCCEEEEEEe-CCCEE-EEEECCCEEEEEeCCCCccccCCcceEEEcC-CCCCeeEEEEcCC
Confidence 7787765431 2222222344677776 56544 4555567888888752111 11122221 2223455777777
Q ss_pred CCEEEEec
Q psy4771 304 GNFLVSLV 311 (337)
Q Consensus 304 G~l~va~~ 311 (337)
|.+.++..
T Consensus 720 ~~~lasgs 727 (793)
T PLN00181 720 DGYIATGS 727 (793)
T ss_pred CCEEEEEe
Confidence 77554443
No 155
>KOG2048|consensus
Probab=94.46 E-value=5.3 Score=39.82 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=37.0
Q ss_pred ecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
.+..|.|-.+|++.+...... ........+|+++++++++++- ...+|..|...+.
T Consensus 221 gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG-vd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 221 GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG-VDPKIIQYSLTTN 277 (691)
T ss_pred ecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc-CCCceEEEEecCC
Confidence 556688888888776532111 1123457788888888777665 4578888888754
No 156
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.38 E-value=2.5 Score=39.59 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=55.9
Q ss_pred ccEEEEcCCCCeeEEEeccccce-eeEEEccCCCEEEEEeCC----CCEEEEEEee-CCCCCceeeeecCCCCCCC-cee
Q psy4771 227 GRLIQYNPKTKKNKVLIANLHFA-NGVELSADESFVIVAETM----SSRVHRYYLK-GPKQGKSEVFIDGLPGLPD-NVK 299 (337)
Q Consensus 227 G~v~~~d~~~~~~~~~~~~~~~p-~gia~~~dg~~lyva~~~----~~~I~~~~~~-g~~~~~~~~~~~~~~g~Pd-gi~ 299 (337)
..|+.++.+++..+.+-.+-..- .-++++++++.||++... ...|++++++ ++ ..+.+.. ..+ .. .+.
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT~-~~~-~~~~~~ 334 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLTC-EDG-DHYSAS 334 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESST-TSS-TTEEEE
T ss_pred cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEeccC-CCC-CceEEE
Confidence 38999998888766544443223 357888999999988876 3478888876 32 3333333 222 33 799
Q ss_pred ECCCCCEEEEecCCCCCc
Q psy4771 300 RDSKGNFLVSLVCPVEQP 317 (337)
Q Consensus 300 ~d~dG~l~va~~~~~~~p 317 (337)
+.++|+++|-...+...|
T Consensus 335 ~Spdg~y~v~~~s~~~~P 352 (353)
T PF00930_consen 335 FSPDGKYYVDTYSGPDTP 352 (353)
T ss_dssp E-TTSSEEEEEEESSSSC
T ss_pred ECCCCCEEEEEEcCCCCC
Confidence 999999888877664444
No 157
>KOG0271|consensus
Probab=94.34 E-value=0.89 Score=42.24 Aligned_cols=138 Identities=19% Similarity=0.166 Sum_probs=83.8
Q ss_pred eEEEEecCcEEEEEeCCce-eEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCCCeEEEEeccc
Q psy4771 74 DLYMGVDGGHILKLSGGKL-VPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMD 151 (337)
Q Consensus 74 ~ly~d~~~g~I~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~~l~~~~ 151 (337)
.+.++..+..++.|++.+. +.+.+.- ....-.+.+.|.|||+.+.+.+.. .|...+..+|+...-.+
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmt---------gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR-- 406 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMT---------GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR-- 406 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhh---------chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh--
Confidence 5667778888999988432 2332221 222446789999998766665543 47777776665432221
Q ss_pred cccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEE
Q psy4771 152 TEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQ 231 (337)
Q Consensus 152 ~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~ 231 (337)
| -.....-++...|-+|.|+.+... .|-.
T Consensus 407 ----G---------------------------------Hv~~VYqvawsaDsRLlVS~SkDs--------------TLKv 435 (480)
T KOG0271|consen 407 ----G---------------------------------HVAAVYQVAWSADSRLLVSGSKDS--------------TLKV 435 (480)
T ss_pred ----h---------------------------------ccceeEEEEeccCccEEEEcCCCc--------------eEEE
Confidence 1 123356788888888888887632 3333
Q ss_pred EcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCCEEEEEE
Q psy4771 232 YNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSSRVHRYY 275 (337)
Q Consensus 232 ~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~~I~~~~ 275 (337)
++..++++..-+. .-..-.++-++|||+ -|+..+++++++++
T Consensus 436 w~V~tkKl~~DLpGh~DEVf~vDwspDG~--rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 436 WDVRTKKLKQDLPGHADEVFAVDWSPDGQ--RVASGGKDKVLRLW 478 (480)
T ss_pred EEeeeeeecccCCCCCceEEEEEecCCCc--eeecCCCceEEEee
Confidence 3333444322222 233456788999995 35667788988876
No 158
>KOG0299|consensus
Probab=94.28 E-value=1.9 Score=40.90 Aligned_cols=64 Identities=8% Similarity=0.172 Sum_probs=44.4
Q ss_pred ceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec-CCCCCCCceeECCCCC-EEEEecCC
Q psy4771 248 FANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID-GLPGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 248 ~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~-~~~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
+-+++|+-+.. .|+.+-+..++|...-...+ .....++.+ .+.|+...|++..+|+ +|++....
T Consensus 382 Witsla~i~~s-dL~asGS~~G~vrLW~i~~g-~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 382 WITSLAVIPGS-DLLASGSWSGCVRLWKIEDG-LRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred ceeeeEecccC-ceEEecCCCCceEEEEecCC-ccccceeeecccccEEEEEEEccCCCEEEEecccc
Confidence 56788888765 48888888777766555432 223444433 2568889999999998 88887544
No 159
>KOG0288|consensus
Probab=94.22 E-value=2.2 Score=40.03 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=70.8
Q ss_pred CccCCcceEEECCCC-cEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccC
Q psy4771 109 QQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEID 187 (337)
Q Consensus 109 ~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~ 187 (337)
+..++...+.+..+| +|..+.....+-.+|..+..+...... .|-.
T Consensus 339 ~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA----~g~k----------------------------- 385 (459)
T KOG0288|consen 339 PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA----EGFK----------------------------- 385 (459)
T ss_pred ecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec----cccc-----------------------------
Confidence 334567778888888 676664334577888887777776642 2210
Q ss_pred CCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccc---eeeEEEccCCCEEEEE
Q psy4771 188 GAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHF---ANGVELSADESFVIVA 264 (337)
Q Consensus 188 ~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~---p~gia~~~dg~~lyva 264 (337)
-..--+-+.++|+|....+ +..+|+||.++..+++++.....-.. -..++|++-|+.|.-+
T Consensus 386 --~asDwtrvvfSpd~~YvaA--------------GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 386 --CASDWTRVVFSPDGSYVAA--------------GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred --cccccceeEECCCCceeee--------------ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 1112466777777653322 34568999999999998776654333 3678888988877776
Q ss_pred eC
Q psy4771 265 ET 266 (337)
Q Consensus 265 ~~ 266 (337)
+.
T Consensus 450 dk 451 (459)
T KOG0288|consen 450 DK 451 (459)
T ss_pred cC
Confidence 64
No 160
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.21 E-value=6.5 Score=39.11 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=43.3
Q ss_pred CCccEEEEcCCCCeeEEEeccccce-eeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCC----CCCcee
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANLHFA-NGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPG----LPDNVK 299 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~~~p-~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g----~Pdgi~ 299 (337)
..|.|..+|+.+|++.--.. ...| .+-.+.-.+..+|+ .+..+.+..|+.+.++ .++-..+++ -|--.
T Consensus 439 ~~g~l~AiD~~tGk~~W~~~-~~~p~~~~~l~t~g~lvf~-g~~~G~l~a~D~~TGe----~lw~~~~g~~~~a~P~ty- 511 (527)
T TIGR03075 439 HMGSLIAWDPITGKIVWEHK-EDFPLWGGVLATAGDLVFY-GTLEGYFKAFDAKTGE----ELWKFKTGSGIVGPPVTY- 511 (527)
T ss_pred CceeEEEEeCCCCceeeEec-CCCCCCCcceEECCcEEEE-ECCCCeEEEEECCCCC----EeEEEeCCCCceecCEEE-
Confidence 45789999999998643222 2222 22222234444444 4556789999876432 112111221 23332
Q ss_pred ECCCCCEEEEecCC
Q psy4771 300 RDSKGNFLVSLVCP 313 (337)
Q Consensus 300 ~d~dG~l~va~~~~ 313 (337)
..+|+.||+...+
T Consensus 512 -~~~G~qYv~~~~G 524 (527)
T TIGR03075 512 -EQDGKQYVAVLSG 524 (527)
T ss_pred -EeCCEEEEEEEec
Confidence 3479999987543
No 161
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.14 E-value=0.21 Score=30.62 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=28.5
Q ss_pred CC-cEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEc
Q psy4771 202 DG-MVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELS 255 (337)
Q Consensus 202 ~G-~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~ 255 (337)
+| ++|+++... +.|..+|+.+++...-..-...|.+++++
T Consensus 2 d~~~lyv~~~~~--------------~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGS--------------NTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCC--------------CEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 44 499888753 48888998877665444446788988875
No 162
>KOG0278|consensus
Probab=94.04 E-value=3.8 Score=36.17 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=43.3
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccce---eeEEEccCCCEEEEEeCCCC
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA---NGVELSADESFVIVAETMSS 269 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p---~gia~~~dg~~lyva~~~~~ 269 (337)
.++.+.+.++|++..+.-+ +.|.-+|+++-.. +.....| +...+.|+. .+||+-....
T Consensus 186 ~VtSlEvs~dG~ilTia~g---------------ssV~Fwdaksf~~---lKs~k~P~nV~SASL~P~k-~~fVaGged~ 246 (334)
T KOG0278|consen 186 PVTSLEVSQDGRILTIAYG---------------SSVKFWDAKSFGL---LKSYKMPCNVESASLHPKK-EFFVAGGEDF 246 (334)
T ss_pred CCcceeeccCCCEEEEecC---------------ceeEEeccccccc---eeeccCccccccccccCCC-ceEEecCcce
Confidence 4688889999986543322 1455556543222 2233334 444567876 6999998899
Q ss_pred EEEEEEeeC
Q psy4771 270 RVHRYYLKG 278 (337)
Q Consensus 270 ~I~~~~~~g 278 (337)
.+++||.+.
T Consensus 247 ~~~kfDy~T 255 (334)
T KOG0278|consen 247 KVYKFDYNT 255 (334)
T ss_pred EEEEEeccC
Confidence 999999964
No 163
>KOG0646|consensus
Probab=93.86 E-value=4.3 Score=38.64 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=43.7
Q ss_pred CCCccEEEcCCCc-EEEEcCCCCc-cCceeeeeecCCc-cEEEEcCCCCeeEEEecccc--ceeeEEEccCCCEEEEEeC
Q psy4771 192 QIPNSVTVDSDGM-VYWSDSSTKY-KSGLFEGLTSGSG-RLIQYNPKTKKNKVLIANLH--FANGVELSADESFVIVAET 266 (337)
Q Consensus 192 ~~pn~v~vd~~G~-lyvtd~~~~~-~~~~~~~~~~~~G-~v~~~d~~~~~~~~~~~~~~--~p~gia~~~dg~~lyva~~ 266 (337)
..++.+++||.++ +|+...-... ...++.......| ..-.++..+-+...+..+.. .-..++++-||. +.++-.
T Consensus 218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd 296 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGD 296 (476)
T ss_pred CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeC
Confidence 3478888998765 7765543221 0000000000111 01112222223333333333 557899999995 666666
Q ss_pred CCCEEEEEEeeC
Q psy4771 267 MSSRVHRYYLKG 278 (337)
Q Consensus 267 ~~~~I~~~~~~g 278 (337)
..+.|.+.++..
T Consensus 297 ~dg~VcvWdi~S 308 (476)
T KOG0646|consen 297 EDGKVCVWDIYS 308 (476)
T ss_pred CCCCEEEEecch
Confidence 677888887753
No 164
>KOG0282|consensus
Probab=93.83 E-value=1.2 Score=42.58 Aligned_cols=175 Identities=16% Similarity=0.199 Sum_probs=96.4
Q ss_pred ccEEEe--eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcC
Q psy4771 65 PEAVVK--HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVT 140 (337)
Q Consensus 65 P~~i~~--~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~ 140 (337)
|.++-+ ++..+| ++..+++|..||.-....+..+ ...++.-+.+.|-++|+=+|+.+..+ ++..+-.
T Consensus 302 ~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY---------d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~ 372 (503)
T KOG0282|consen 302 PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY---------DRHLGAILDITFVDEGRRFISSSDDKSVRIWENR 372 (503)
T ss_pred ceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH---------HhhhhheeeeEEccCCceEeeeccCccEEEEEcC
Confidence 445555 343666 9999999999986222112112 13455677899989998888866544 4444443
Q ss_pred CCeEEE-EeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccc----------cCCC-CCCCCccEEEcCCCc
Q psy4771 141 TGQTEQ-LISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTE----------IDGA-KPQIPNSVTVDSDGM 204 (337)
Q Consensus 141 ~g~~~~-l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~----------~~~~-~~~~pn~v~vd~~G~ 204 (337)
.+.... ++..... ..| .+++.|+|++. -.+.|..+... +++. ....+..+.+++||.
T Consensus 373 ~~v~ik~i~~~~~h------smP-~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~ 445 (503)
T KOG0282|consen 373 IPVPIKNIADPEMH------TMP-CLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR 445 (503)
T ss_pred CCccchhhcchhhc------cCc-ceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence 332222 2211000 122 37788888887 22444444411 2221 234567888899988
Q ss_pred EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccce----eeEEEccCCCEEEEEeCCCCEEE
Q psy4771 205 VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA----NGVELSADESFVIVAETMSSRVH 272 (337)
Q Consensus 205 lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p----~gia~~~dg~~lyva~~~~~~I~ 272 (337)
..++-. .+|+++.+|-++-+ +...+... .++.+.|......++....+.|.
T Consensus 446 ~l~SGd--------------sdG~v~~wdwkt~k---l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 446 TLCSGD--------------SDGKVNFWDWKTTK---LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIK 500 (503)
T ss_pred eEEeec--------------CCccEEEeechhhh---hhhccccCCcceEEEEecCCCcceeEecccCceeE
Confidence 655543 46799999865432 22233322 34555566555555554444443
No 165
>KOG0286|consensus
Probab=93.79 E-value=4.9 Score=36.22 Aligned_cols=221 Identities=11% Similarity=0.156 Sum_probs=113.3
Q ss_pred eeccCcccCccEEEe--eCCeEEEEecCcEEEEEeC---CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEEC
Q psy4771 56 KLFENEIHGPEAVVK--HKGDLYMGVDGGHILKLSG---GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADA 130 (337)
Q Consensus 56 ~~~~g~~~~P~~i~~--~~g~ly~d~~~g~I~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~ 130 (337)
+.+.|-+..--++-+ +...|.+...+|+++.||. ++...+ .+. ..-..-.++.|.|+.+.|-.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-pl~-----------s~WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-PLP-----------SSWVMTCAYSPSGNFVACGG 116 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-ecC-----------ceeEEEEEECCCCCeEEecC
Confidence 344454443334444 3456778999999999997 333322 111 12244678999998887743
Q ss_pred CCc---EEEEEcC--CCeEEEEeccccccCCCCCCCCCceeeCCCCCcc--cccc---eeeec-----cccCCCCCCCCc
Q psy4771 131 YFG---LYKVNVT--TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG--QTEQ---LISMD-----TEIDGAKPQIPN 195 (337)
Q Consensus 131 ~~g---v~~vd~~--~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~--~~~~---v~~~~-----~~~~~~~~~~pn 195 (337)
-.. |+.+..+ .+.+. ..+ +..|-.-++ .-..+-.|++++ +.+. +..+. ..+.+. ..-.-
T Consensus 117 LdN~Csiy~ls~~d~~g~~~-v~r---~l~gHtgyl-ScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH-~gDV~ 190 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEGNVR-VSR---ELAGHTGYL-SCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGH-TGDVM 190 (343)
T ss_pred cCceeEEEecccccccccce-eee---eecCcccee-EEEEEcCCCceEecCCCceEEEEEcccceEEEEecCC-cccEE
Confidence 222 5555422 22111 111 122221112 123344477777 1111 11111 011111 12234
Q ss_pred cEEEcC-CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc-ccceeeEEEccCCCEEEEEeCCCCEEEE
Q psy4771 196 SVTVDS-DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN-LHFANGVELSADESFVIVAETMSSRVHR 273 (337)
Q Consensus 196 ~v~vd~-~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyva~~~~~~I~~ 273 (337)
.+.+.| +++.|++-.-.. .-..+|...+.......+ -.--|.|++-|+| .-+++-+......-
T Consensus 191 slsl~p~~~ntFvSg~cD~--------------~aklWD~R~~~c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRl 255 (343)
T KOG0286|consen 191 SLSLSPSDGNTFVSGGCDK--------------SAKLWDVRSGQCVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRL 255 (343)
T ss_pred EEecCCCCCCeEEeccccc--------------ceeeeeccCcceeEeecccccccceEEEccCC-CeeeecCCCceeEE
Confidence 566667 778887765422 333344444443333322 2345888888988 47777777788888
Q ss_pred EEeeCCCCCceeeeec-CCCCCCCceeECCCCCEEEEec
Q psy4771 274 YYLKGPKQGKSEVFID-GLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 274 ~~~~g~~~~~~~~~~~-~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
|++.... +..+|.. ....-...+++...|+|..+-+
T Consensus 256 yDlRaD~--~~a~ys~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 256 YDLRADQ--ELAVYSHDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred EeecCCc--EEeeeccCcccCCceeEEEcccccEEEeee
Confidence 8885321 2333322 1112257889999999666643
No 166
>KOG1215|consensus
Probab=93.59 E-value=1.7 Score=46.10 Aligned_cols=151 Identities=17% Similarity=0.249 Sum_probs=97.0
Q ss_pred ccCccEEEe--eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCC-CcEEEEECCC--cE
Q psy4771 62 IHGPEAVVK--HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAYF--GL 134 (337)
Q Consensus 62 ~~~P~~i~~--~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~~--gv 134 (337)
.-.|+++++ -.+.+| +|.....|...+. +....+. +. .....|..+++++. |.+|.+|+.. .+
T Consensus 479 ~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl-~~---------~~l~~~r~~~v~p~~g~~~wtd~~~~~~i 548 (877)
T KOG1215|consen 479 LCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVL-VS---------KDLDLPRSIAVDPEKGLMFWTDWGQPPRI 548 (877)
T ss_pred ccccCcEEEEeccCCceecccCCceeEEEEccCCceeEE-Ee---------cCCCCccceeeccccCeeEEecCCCCchh
Confidence 457889988 355666 9999998888773 3322221 11 12266999999998 5899999763 35
Q ss_pred EEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCC
Q psy4771 135 YKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTK 213 (337)
Q Consensus 135 ~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~ 213 (337)
.+-..++.....+... ....||++++|- +.++|+.|....
T Consensus 549 ~ra~~dg~~~~~l~~~---------------------------------------~~~~p~glt~d~~~~~~yw~d~~~~ 589 (877)
T KOG1215|consen 549 ERASLDGSERAVLVTN---------------------------------------GILWPNGLTIDYETDRLYWADAKLD 589 (877)
T ss_pred hhhcCCCCCceEEEeC---------------------------------------CccCCCcceEEeecceeEEEcccCC
Confidence 5555554444444421 356899999997 557999998754
Q ss_pred ccCceeeeeecCCccEEEEcCCCCeeE-EEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 214 YKSGLFEGLTSGSGRLIQYNPKTKKNK-VLIANLHFANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
. .+...+-++.+.+ .....+..|.++++..+ .+|.++.....+.+...
T Consensus 590 ~-------------~i~~~~~~g~~r~~~~~~~~~~p~~~~~~~~--~iyw~d~~~~~~~~~~~ 638 (877)
T KOG1215|consen 590 Y-------------TIESANMDGQNRRVVDSEDLPHPFGLSVFED--YIYWTDWSNRAISRAEK 638 (877)
T ss_pred c-------------ceeeeecCCCceEEeccccCCCceEEEEecc--eeEEeeccccceEeeec
Confidence 2 2333333323222 33445677888888654 59999988776666554
No 167
>KOG1407|consensus
Probab=93.47 E-value=5.2 Score=35.51 Aligned_cols=180 Identities=12% Similarity=0.059 Sum_probs=94.8
Q ss_pred ccCccEEEe-eCC-eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECC-CcEEEE
Q psy4771 62 IHGPEAVVK-HKG-DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAY-FGLYKV 137 (337)
Q Consensus 62 ~~~P~~i~~-~~g-~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~-~gv~~v 137 (337)
+..-++++. .+| .+-++.-++.+..+.............. ...+...-++.++.. .++++.++ ..|.+.
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~-------gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYR-------GHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhccc-------CCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 334567776 344 4556777776666654322211111110 112334567888775 55555433 458888
Q ss_pred EcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccC
Q psy4771 138 NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKS 216 (337)
Q Consensus 138 d~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~ 216 (337)
|...++-..... ..|. -.-++..|+|. +.+
T Consensus 93 d~r~~k~~~~i~----~~~e------------------------------------ni~i~wsp~g~~~~~--------- 123 (313)
T KOG1407|consen 93 DIRSGKCTARIE----TKGE------------------------------------NINITWSPDGEYIAV--------- 123 (313)
T ss_pred EeccCcEEEEee----ccCc------------------------------------ceEEEEcCCCCEEEE---------
Confidence 876554433321 1111 12344555543 222
Q ss_pred ceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCC
Q psy4771 217 GLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPD 296 (337)
Q Consensus 217 ~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pd 296 (337)
.+.+..|-.+|..+.++..--.-..+.|-+++..++ .+++..++.++|.....-. +..... +...|.
T Consensus 124 ------~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsyps--Lkpv~s----i~AH~s 190 (313)
T KOG1407|consen 124 ------GNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPS--LKPVQS----IKAHPS 190 (313)
T ss_pred ------ecCcccEEEEEecccceeehhcccceeeeeeecCCC-CEEEEecCCceEEEEeccc--cccccc----cccCCc
Confidence 223346667776555443333334567899999666 4888888878877766431 111111 223344
Q ss_pred c---eeECCCCCEEEEe
Q psy4771 297 N---VKRDSKGNFLVSL 310 (337)
Q Consensus 297 g---i~~d~dG~l~va~ 310 (337)
+ |++|++|+++..-
T Consensus 191 nCicI~f~p~GryfA~G 207 (313)
T KOG1407|consen 191 NCICIEFDPDGRYFATG 207 (313)
T ss_pred ceEEEEECCCCceEeec
Confidence 4 7899999866543
No 168
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.7 Score=39.61 Aligned_cols=63 Identities=13% Similarity=0.224 Sum_probs=40.1
Q ss_pred CCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEc
Q psy4771 122 NGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVD 200 (337)
Q Consensus 122 ~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd 200 (337)
+|.+|.--+. ..|.+++|++|++...... .+. +..+..+ ....+-+||||.+
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widl----S~L----~~~~~~~-------------------~~~~nvlNGIA~~ 237 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDL----SGL----LKELNLD-------------------KSNDNVLNGIAHD 237 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEc----cCC----chhcCcc-------------------ccccccccceeec
Confidence 4555544333 4699999999999888752 221 1111111 1235679999999
Q ss_pred CCC-cEEEEcCC
Q psy4771 201 SDG-MVYWSDSS 211 (337)
Q Consensus 201 ~~G-~lyvtd~~ 211 (337)
+++ ++|+|--.
T Consensus 238 ~~~~r~~iTGK~ 249 (262)
T COG3823 238 PQQDRFLITGKL 249 (262)
T ss_pred CcCCeEEEecCc
Confidence 976 79988754
No 169
>KOG0296|consensus
Probab=93.29 E-value=6.9 Score=36.30 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=39.3
Q ss_pred ecCCccEEEEcCCCCeeEEEecccc-ceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLIANLH-FANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~~~~~-~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
...+|.|+.+|..+|+......+.. .-..++++||++ +.|+-+..+.-.+|..
T Consensus 344 ~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 344 ACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEV 397 (399)
T ss_pred eccCceEEeeeccccceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEec
Confidence 4567899999999998766555543 346788999885 7777777787777764
No 170
>KOG1539|consensus
Probab=93.28 E-value=7.4 Score=39.89 Aligned_cols=81 Identities=14% Similarity=0.142 Sum_probs=49.5
Q ss_pred cEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCE
Q psy4771 228 RLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNF 306 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l 306 (337)
.|..||..+.++.+-. .....-+.++|||||++|..+.. .+.|..+|+-.+.+-. .+. ++.-+-.+.+.+.|.+
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasm-D~tIr~wDlpt~~lID--~~~--vd~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASM-DSTIRTWDLPTGTLID--GLL--VDSPCTSLSFSPNGDF 631 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeec-CCcEEEEeccCcceee--eEe--cCCcceeeEECCCCCE
Confidence 5677776655432222 23456789999999998877775 4688889985332211 111 1222467777777776
Q ss_pred EEEecCC
Q psy4771 307 LVSLVCP 313 (337)
Q Consensus 307 ~va~~~~ 313 (337)
..+.+..
T Consensus 632 LAT~Hvd 638 (910)
T KOG1539|consen 632 LATVHVD 638 (910)
T ss_pred EEEEEec
Confidence 6665544
No 171
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=93.22 E-value=0.34 Score=35.54 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=30.3
Q ss_pred CcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-EEEEE
Q psy4771 81 GGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-LYKVN 138 (337)
Q Consensus 81 ~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v~~vd 138 (337)
-+.++-+++++.+.++ .....|+||.+++++ .|||++...+ |..+.
T Consensus 35 ~~~Vvyyd~~~~~~va------------~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 35 WGNVVYYDGKEVKVVA------------SGFSFANGIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred CceEEEEeCCEeEEee------------ccCCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence 3445556665544332 345779999999987 9999987643 55544
No 172
>KOG4441|consensus
Probab=93.09 E-value=3.9 Score=41.10 Aligned_cols=153 Identities=18% Similarity=0.235 Sum_probs=84.5
Q ss_pred cEEEeeCCeEE-EEecC------cEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc---
Q psy4771 66 EAVVKHKGDLY-MGVDG------GHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG--- 133 (337)
Q Consensus 66 ~~i~~~~g~ly-~d~~~------g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g--- 133 (337)
.++++-++.|| ++-.+ ..+.+||+ +++..+... ...-.-.|++. =+|.||+.-...|
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M----------~~~R~~~~v~~-l~g~iYavGG~dg~~~ 394 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM----------NTKRSDFGVAV-LDGKLYAVGGFDGEKS 394 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCc----------cCccccceeEE-ECCEEEEEeccccccc
Confidence 45555688999 66555 35677776 444433211 11111235555 3578999854332
Q ss_pred ---EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcC
Q psy4771 134 ---LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS 210 (337)
Q Consensus 134 ---v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~ 210 (337)
+-++|+.+.+-...+... ....-.++++ -+|.||+.-.
T Consensus 395 l~svE~YDp~~~~W~~va~m~--------------------------------------~~r~~~gv~~-~~g~iYi~GG 435 (571)
T KOG4441|consen 395 LNSVECYDPVTNKWTPVAPML--------------------------------------TRRSGHGVAV-LGGKLYIIGG 435 (571)
T ss_pred cccEEEecCCCCcccccCCCC--------------------------------------cceeeeEEEE-ECCEEEEEcC
Confidence 777888776655554310 0111122322 3689998876
Q ss_pred CCCccCceeeeeecCCccEEEEcCCCCeeEEEeccc--cceeeEEEccCCCEEEEEeCCC-----CEEEEEEeeC
Q psy4771 211 STKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANL--HFANGVELSADESFVIVAETMS-----SRVHRYYLKG 278 (337)
Q Consensus 211 ~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~--~~p~gia~~~dg~~lyva~~~~-----~~I~~~~~~g 278 (337)
.... ...-..+.+|||.+++.+....-. ..-.|++.- ++ .||+.-... .+|.+|++..
T Consensus 436 ~~~~--------~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 436 GDGS--------SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NG-KIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred cCCC--------ccccceEEEEcCCCCceeecCCcccccccceEEEE-CC-EEEEECCccCCCccceEEEEcCCC
Confidence 4321 112248999999999876544321 122455554 33 699887543 3477788754
No 173
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.88 E-value=2.1 Score=40.35 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=21.5
Q ss_pred EECCCCcEEEEECCCcEEEEEcCCCeEE
Q psy4771 118 KFDKNGALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 118 ~~d~~G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
..+.+|++|+......++.+|++++++.
T Consensus 64 ~~~~dg~v~~~~~~G~i~A~d~~~g~~~ 91 (370)
T COG1520 64 PADGDGTVYVGTRDGNIFALNPDTGLVK 91 (370)
T ss_pred cEeeCCeEEEecCCCcEEEEeCCCCcEE
Confidence 4667889999843345999999988765
No 174
>KOG0643|consensus
Probab=92.87 E-value=6.6 Score=35.01 Aligned_cols=178 Identities=7% Similarity=-0.007 Sum_probs=100.7
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEecc
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISM 150 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~ 150 (337)
+++||+...+...-.|-.-+.+.+-++ ...-+..+.+.+|.+....++-+. +.+...|.++|+.......
T Consensus 22 GDLlFscaKD~~~~vw~s~nGerlGty---------~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~ 92 (327)
T KOG0643|consen 22 GDLLFSCAKDSTPTVWYSLNGERLGTY---------DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT 92 (327)
T ss_pred CcEEEEecCCCCceEEEecCCceeeee---------cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec
Confidence 567787777776656543122222111 123355678888888766666544 4467778777775544421
Q ss_pred ccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc--EEEEcCCCCccCceeeeeecCCcc
Q psy4771 151 DTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM--VYWSDSSTKYKSGLFEGLTSGSGR 228 (337)
Q Consensus 151 ~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~--lyvtd~~~~~~~~~~~~~~~~~G~ 228 (337)
......+.++.+|+ ++.+|....+ .+.
T Consensus 93 ----------------------------------------~~~Vk~~~F~~~gn~~l~~tD~~mg~-----------~~~ 121 (327)
T KOG0643|consen 93 ----------------------------------------NSPVKRVDFSFGGNLILASTDKQMGY-----------TCF 121 (327)
T ss_pred ----------------------------------------CCeeEEEeeccCCcEEEEEehhhcCc-----------ceE
Confidence 11235667788887 4556654332 234
Q ss_pred EEEEcCC-------CCe-eEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC-CCCceeeeecCCCCCCCcee
Q psy4771 229 LIQYNPK-------TKK-NKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP-KQGKSEVFIDGLPGLPDNVK 299 (337)
Q Consensus 229 v~~~d~~-------~~~-~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~-~~~~~~~~~~~~~g~Pdgi~ 299 (337)
|..+|.. ..+ ..++...-..++.+.|++-+++|... ...+.|.+|+...+ ...+... + .......|.
T Consensus 122 v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G-he~G~is~~da~~g~~~v~s~~--~-h~~~Ind~q 197 (327)
T KOG0643|consen 122 VSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG-HEDGSISIYDARTGKELVDSDE--E-HSSKINDLQ 197 (327)
T ss_pred EEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe-cCCCcEEEEEcccCceeeechh--h-hcccccccc
Confidence 4444432 122 22333334567788889988766554 45689999998632 1111100 0 111367899
Q ss_pred ECCCCCEEEEecCC
Q psy4771 300 RDSKGNFLVSLVCP 313 (337)
Q Consensus 300 ~d~dG~l~va~~~~ 313 (337)
+.+|..++++....
T Consensus 198 ~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 198 FSRDRTYFITGSKD 211 (327)
T ss_pred ccCCcceEEecccC
Confidence 99999988887544
No 175
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.79 E-value=7.4 Score=35.32 Aligned_cols=37 Identities=30% Similarity=0.319 Sum_probs=25.9
Q ss_pred CCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEec
Q psy4771 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLIS 149 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~ 149 (337)
+.-.|+.+..+ -.||+|...|+..+|..+-+--+++.
T Consensus 129 gyaygv~vsGn-~aYVadlddgfLivdvsdpssP~lag 165 (370)
T COG5276 129 GYAYGVYVSGN-YAYVADLDDGFLIVDVSDPSSPQLAG 165 (370)
T ss_pred ceEEEEEecCC-EEEEeeccCcEEEEECCCCCCceeee
Confidence 55667777543 78999988898888876554444443
No 176
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.76 E-value=0.7 Score=43.46 Aligned_cols=82 Identities=17% Similarity=0.078 Sum_probs=45.2
Q ss_pred ccEEEEcCCCCeeEEEeccc-cceeeEEEccCCCEEE-EEeCCCCEEEEEEeeCCCCCceeeeecCCCCCC--CceeECC
Q psy4771 227 GRLIQYNPKTKKNKVLIANL-HFANGVELSADESFVI-VAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLP--DNVKRDS 302 (337)
Q Consensus 227 G~v~~~d~~~~~~~~~~~~~-~~p~gia~~~dg~~ly-va~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~P--dgi~~d~ 302 (337)
-.+|.+|.++++++.+-++- ....|..++++.+.+| |-+ ..+|.+++++..+ .+++.+-..++- ....+++
T Consensus 60 ~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~--~~~l~~vdL~T~e---~~~vy~~p~~~~g~gt~v~n~ 134 (386)
T PF14583_consen 60 RNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN--GRSLRRVDLDTLE---ERVVYEVPDDWKGYGTWVANS 134 (386)
T ss_dssp -EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET--TTEEEEEETTT-----EEEEEE--TTEEEEEEEEE-T
T ss_pred cceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC--CCeEEEEECCcCc---EEEEEECCcccccccceeeCC
Confidence 48999999999998887653 2234788888888874 544 4689999987532 223333111111 2334578
Q ss_pred CCCEEEEecCC
Q psy4771 303 KGNFLVSLVCP 313 (337)
Q Consensus 303 dG~l~va~~~~ 313 (337)
|++.+++.-..
T Consensus 135 d~t~~~g~e~~ 145 (386)
T PF14583_consen 135 DCTKLVGIEIS 145 (386)
T ss_dssp TSSEEEEEEEE
T ss_pred CccEEEEEEEe
Confidence 88888876443
No 177
>KOG0272|consensus
Probab=92.66 E-value=3.8 Score=38.61 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=84.7
Q ss_pred cCCcceEEECCCCcEEEEECCCcE-EEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 111 CGRPLGIKFDKNGALHVADAYFGL-YKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 111 ~~~P~Gl~~d~~G~lyVad~~~gv-~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
.....+++|.+||.|..+-.-..+ +..|..+|.-..+.. |
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~------g--------------------------------- 343 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA------G--------------------------------- 343 (459)
T ss_pred ccccceeEecCCCceeeccCccchhheeecccCcEEEEec------c---------------------------------
Confidence 344568999999999888433332 334666665433332 1
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCC
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
-.....+|+++|+|....|.++.+ .-+||.+.... .+-.+...-..-..|.++|+.....++.+..+
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dn------------t~kVWDLR~r~-~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDN------------TCKVWDLRMRS-ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDN 410 (459)
T ss_pred cccceeeEeECCCceEEeecCCCC------------cEEEeeecccc-cceecccccchhhheEecccCCeEEEEcccCc
Confidence 133467899999998777776532 23555554331 23334444455678999997667888888888
Q ss_pred EEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 270 RVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 270 ~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
.+..+...+-.. ...++. ..+-.-.+.+.+||...++.
T Consensus 411 t~kiWs~~~~~~--~ksLaG-He~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 411 TVKIWSTRTWSP--LKSLAG-HEGKVISLDISPDSQAIATS 448 (459)
T ss_pred ceeeecCCCccc--chhhcC-CccceEEEEeccCCceEEEe
Confidence 877666443211 122222 12234456666777655554
No 178
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=92.64 E-value=0.3 Score=29.91 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=25.3
Q ss_pred ccCCcceEEECCCC-cEEEEECCCc-EEEEEcCC
Q psy4771 110 QCGRPLGIKFDKNG-ALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 110 ~~~~P~Gl~~d~~G-~lyVad~~~g-v~~vd~~~ 141 (337)
....|+|+++|+.+ +||.+|...+ |.+.+.++
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 45679999999986 8999998765 77777654
No 179
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.04 E-value=18 Score=37.97 Aligned_cols=155 Identities=12% Similarity=0.081 Sum_probs=81.0
Q ss_pred EEEe-eCCeEE-EEecCcEEEEEeCCceeEE-EecCccccCccccCccCCcceEEECCC-CcEEEEECCCc-EEEEEcCC
Q psy4771 67 AVVK-HKGDLY-MGVDGGHILKLSGGKLVPV-VKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 67 ~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~~g-v~~vd~~~ 141 (337)
++++ .++.++ +...++.|..|+......- ..... ............++++++. ++.+++-...+ |...|..+
T Consensus 488 ~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHY---PVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCccccccccccc---ceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 3455 455544 7788888888874221000 00000 0000011123457888764 44444443444 66678776
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC-CCcEEEEcCCCCccCceee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTKYKSGLFE 220 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~-~G~lyvtd~~~~~~~~~~~ 220 (337)
++...... + --....++++++ +|.+++|-..
T Consensus 565 ~~~~~~~~------~---------------------------------H~~~V~~l~~~p~~~~~L~Sgs~--------- 596 (793)
T PLN00181 565 SQLVTEMK------E---------------------------------HEKRVWSIDYSSADPTLLASGSD--------- 596 (793)
T ss_pred CeEEEEec------C---------------------------------CCCCEEEEEEcCCCCCEEEEEcC---------
Confidence 65433221 1 012357888886 6776655543
Q ss_pred eeecCCccEEEEcCCCCeeEEEeccccceeeEEEc-cCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 221 GLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELS-ADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 221 ~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~-~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+|.|..+|..+++.............+++. +++. .+++-...+.|..+++..
T Consensus 597 -----Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 597 -----DGSVKLWSINQGVSIGTIKTKANICCVQFPSESGR-SLAFGSADHKVYYYDLRN 649 (793)
T ss_pred -----CCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence 346667776655432222222344567775 4565 555555678999998754
No 180
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=91.96 E-value=8.6 Score=34.17 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=22.9
Q ss_pred ceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 248 FANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 248 ~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
...|+..+.+-.+||+++.. -.||+|..+.
T Consensus 206 QTEG~VaDdEtG~LYIaeEd-vaiWK~~Aep 235 (364)
T COG4247 206 QTEGMVADDETGFLYIAEED-VAIWKYEAEP 235 (364)
T ss_pred cccceeeccccceEEEeecc-ceeeecccCC
Confidence 34688888776789999964 5799998763
No 181
>KOG2111|consensus
Probab=91.90 E-value=9.8 Score=34.71 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=47.7
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEE-EcCCCCee-EEEecccc--ceeeEEEccCCCEEEEEeCCCC
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQ-YNPKTKKN-KVLIANLH--FANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~-~d~~~~~~-~~~~~~~~--~p~gia~~~dg~~lyva~~~~~ 269 (337)
...++..-+|.+..|.+. +|.|.| +|..+|+. ..+..|.. .-..|+++||.+ ...+.+.++
T Consensus 184 Iacv~Ln~~Gt~vATaSt--------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKg 248 (346)
T KOG2111|consen 184 IACVALNLQGTLVATAST--------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKG 248 (346)
T ss_pred eeEEEEcCCccEEEEecc--------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc-EEEEEcCCC
Confidence 456777788887766654 455554 67666643 33444433 346899999996 445556789
Q ss_pred EEEEEEeeCC
Q psy4771 270 RVHRYYLKGP 279 (337)
Q Consensus 270 ~I~~~~~~g~ 279 (337)
+|..|.+.+.
T Consensus 249 TlHiF~l~~~ 258 (346)
T KOG2111|consen 249 TLHIFSLRDT 258 (346)
T ss_pred eEEEEEeecC
Confidence 9999999764
No 182
>KOG0293|consensus
Probab=91.80 E-value=5.3 Score=37.68 Aligned_cols=182 Identities=12% Similarity=0.095 Sum_probs=91.5
Q ss_pred cCccEEEe-eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEE
Q psy4771 63 HGPEAVVK-HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVN 138 (337)
Q Consensus 63 ~~P~~i~~-~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd 138 (337)
+.+.+.+. .||.=+ ++..++.|+.|+. |+... . |..-...+...|++.+|| .++.......++.++
T Consensus 313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~--~--------W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~ 382 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG--N--------WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYN 382 (519)
T ss_pred CCcceeEEccCCceeEecCCCCcEEEecCCcchhh--c--------ccccccceeEEEEEcCCCcEEEEEecccceeeec
Confidence 45666666 555544 8889999999976 32210 0 100111346789999999 566555445577776
Q ss_pred cCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeec-------cccCCCCCCCCccEEEcCCCcEEE
Q psy4771 139 VTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMD-------TEIDGAKPQIPNSVTVDSDGMVYW 207 (337)
Q Consensus 139 ~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~-------~~~~~~~~~~pn~v~vd~~G~lyv 207 (337)
.++..-+-+... ..+ =..+.++.||++. ...++.--+ .++.|. ..|+..+
T Consensus 383 ~e~~~dr~lise---~~~-----its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh-----------kq~~fiI 443 (519)
T KOG0293|consen 383 REARVDRGLISE---EQP-----ITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH-----------KQGHFII 443 (519)
T ss_pred hhhhhhhccccc---cCc-----eeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc-----------cccceEE
Confidence 654322223221 111 1234455555554 222221111 111111 0111111
Q ss_pred -EcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc-ccceeeEEEccCCCEEEEEeCCCCEEEEEE
Q psy4771 208 -SDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN-LHFANGVELSADESFVIVAETMSSRVHRYY 275 (337)
Q Consensus 208 -td~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyva~~~~~~I~~~~ 275 (337)
+..+.. +......+..++.||.++..+|+......| ....|.++++|.....+.+.+..++|...-
T Consensus 444 rSCFgg~--~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 444 RSCFGGG--NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred EeccCCC--CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 111100 001122244556888888777765444433 456788888887777777776666655443
No 183
>KOG0294|consensus
Probab=91.63 E-value=11 Score=34.52 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=46.8
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEE
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHR 273 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~ 273 (337)
.|++++.|.|+|-.+-.+ ++.+..+|.-.|+...+..--..+.-|.|++.|++.+|.- +++|-.
T Consensus 130 Vt~lsiHPS~KLALsVg~--------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~--~~~i~i 193 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGG--------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG--RNKIDI 193 (362)
T ss_pred cceeEecCCCceEEEEcC--------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe--ccEEEE
Confidence 899999999987766544 2244444544454444443344667799999999888876 568888
Q ss_pred EEeeC
Q psy4771 274 YYLKG 278 (337)
Q Consensus 274 ~~~~g 278 (337)
|.++.
T Consensus 194 ~q~d~ 198 (362)
T KOG0294|consen 194 YQLDN 198 (362)
T ss_pred Eeccc
Confidence 87764
No 184
>smart00284 OLF Olfactomedin-like domains.
Probab=91.62 E-value=9.5 Score=34.00 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=83.1
Q ss_pred CccEEEeeCCeEE-EEecCcEEEEEeCC--ceeEEEecCccc-cCccc-cCccCCcceEEECCCC--cEEEEECCCc---
Q psy4771 64 GPEAVVKHKGDLY-MGVDGGHILKLSGG--KLVPVVKLGKDC-YGFKY-EQQCGRPLGIKFDKNG--ALHVADAYFG--- 133 (337)
Q Consensus 64 ~P~~i~~~~g~ly-~d~~~g~I~~~~~~--~~~~~~~~g~~~-~~~~~-~~~~~~P~Gl~~d~~G--~lyVad~~~g--- 133 (337)
|.-.++ -+|.+| --.....|+|++-. .......+.... ..... ......=..+++|.+| -||-+....|
T Consensus 76 GtG~VV-YngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~iv 154 (255)
T smart00284 76 GTGVVV-YNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIV 154 (255)
T ss_pred cccEEE-ECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEE
Confidence 544444 456665 56666789999863 322222221100 00000 0111122479999888 3333333334
Q ss_pred EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCC
Q psy4771 134 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTK 213 (337)
Q Consensus 134 v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~ 213 (337)
|.++|+++-.+...... ... .-..-|...+ -|.||++++...
T Consensus 155 vSkLnp~tL~ve~tW~T--~~~----------------------------------k~sa~naFmv--CGvLY~~~s~~~ 196 (255)
T smart00284 155 ISKLNPATLTIENTWIT--TYN----------------------------------KRSASNAFMI--CGILYVTRSLGS 196 (255)
T ss_pred EEeeCcccceEEEEEEc--CCC----------------------------------cccccccEEE--eeEEEEEccCCC
Confidence 46788876655444321 111 1111222222 488999986321
Q ss_pred ccCceeeeeecCCcc-EEEEcCCCCeeEEEeccccce----eeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 214 YKSGLFEGLTSGSGR-LIQYNPKTKKNKVLIANLHFA----NGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 214 ~~~~~~~~~~~~~G~-v~~~d~~~~~~~~~~~~~~~p----~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
...+ -+.||..+++...+.-.+..+ ..|...|.++.||+=| ++.+..|++
T Consensus 197 -----------~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd--ng~~l~Y~v 251 (255)
T smart00284 197 -----------KGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN--NGHLVHYDI 251 (255)
T ss_pred -----------CCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe--CCeEEEEEE
Confidence 1223 467888776544332233333 3478889888999988 456677765
No 185
>KOG0645|consensus
Probab=91.50 E-value=9.9 Score=33.97 Aligned_cols=113 Identities=12% Similarity=0.141 Sum_probs=71.5
Q ss_pred cceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCC
Q psy4771 114 PLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQ 192 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~ 192 (337)
...+++.|.|++..+-++.. +......+++..-+.. ++|- -+
T Consensus 64 VRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~----lEGH---------------------------------En 106 (312)
T KOG0645|consen 64 VRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVAT----LEGH---------------------------------EN 106 (312)
T ss_pred eeeeeecCCCcEEEEeeccceEEEeecCCCceeEEee----eecc---------------------------------cc
Confidence 56899999999766666655 3333344455555543 3332 23
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE---EEeccccceeeEEEccCCCEEEEEeCCCC
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK---VLIANLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~---~~~~~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
..-.+++..+|++..|.+..+ +--|+.+|- +.+.+ ++.+...--..+.+.|-.. |+++-+..+
T Consensus 107 EVK~Vaws~sG~~LATCSRDK------------SVWiWe~de-ddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDn 172 (312)
T KOG0645|consen 107 EVKCVAWSASGNYLATCSRDK------------SVWIWEIDE-DDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDN 172 (312)
T ss_pred ceeEEEEcCCCCEEEEeeCCC------------eEEEEEecC-CCcEEEEeeeccccccccEEEEcCCcc-eeEEeccCC
Confidence 467889999999887777643 113444442 23332 3344455567888998764 777888888
Q ss_pred EEEEEEee
Q psy4771 270 RVHRYYLK 277 (337)
Q Consensus 270 ~I~~~~~~ 277 (337)
+|..|+-.
T Consensus 173 TIk~~~~~ 180 (312)
T KOG0645|consen 173 TIKVYRDE 180 (312)
T ss_pred eEEEEeec
Confidence 88888765
No 186
>KOG0973|consensus
Probab=91.34 E-value=13 Score=39.12 Aligned_cols=91 Identities=10% Similarity=0.036 Sum_probs=52.3
Q ss_pred CCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc---EEEEEcCCCeEEEE
Q psy4771 72 KGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG---LYKVNVTTGQTEQL 147 (337)
Q Consensus 72 ~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g---v~~vd~~~g~~~~l 147 (337)
++.+. +...+++|+.|+.-+...+..+ ....+.+.|+.+||-|..+.+.+..+ |++.+. -+..+.+
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl---------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~I 209 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFELLKVL---------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSI 209 (942)
T ss_pred CccEEEEecccceEEEEccccceeeeee---------ecccccccceEECCccCeeeeecCCceEEEEEccc-ceeeEee
Confidence 45555 6777889999987444333333 23446689999999998888877655 444332 3444444
Q ss_pred eccccccCCCCCCCCCceeeCCCCCcc
Q psy4771 148 ISMDTEIDGAKPQIPNSVTVDSDGQTG 174 (337)
Q Consensus 148 ~~~~~~~~g~~~~~P~~v~~~~~g~~~ 174 (337)
..+..+..+.+.+ --+.-+|||+++
T Consensus 210 t~pf~~~~~~T~f--~RlSWSPDG~~l 234 (942)
T KOG0973|consen 210 TKPFEESPLTTFF--LRLSWSPDGHHL 234 (942)
T ss_pred ccchhhCCCccee--eecccCCCcCee
Confidence 4432222222100 013346777776
No 187
>KOG0293|consensus
Probab=91.28 E-value=3.1 Score=39.21 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=66.0
Q ss_pred CCcceEEECCCCcEEEEEC-CCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADA-YFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~-~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
..+...++-|||.=+|+-+ ..++...|.++....-. .|. .
T Consensus 313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W-------~gv--------------------------------r 353 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNW-------EGV--------------------------------R 353 (519)
T ss_pred CCcceeEEccCCceeEecCCCCcEEEecCCcchhhcc-------ccc--------------------------------c
Confidence 4566788888984455543 34588888775432211 221 2
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCC
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
.....|+++.+||. ++..+.. -.+..|+..+..-+.+...-..-..++++.|++ +...+-..+
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d---------------~~i~l~~~e~~~dr~lise~~~its~~iS~d~k-~~LvnL~~q 417 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVD---------------KKIRLYNREARVDRGLISEEQPITSFSISKDGK-LALVNLQDQ 417 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecc---------------cceeeechhhhhhhccccccCceeEEEEcCCCc-EEEEEcccC
Confidence 34468999999997 5544422 144444443332222333334457788999996 555555677
Q ss_pred EEEEEEeeC
Q psy4771 270 RVHRYYLKG 278 (337)
Q Consensus 270 ~I~~~~~~g 278 (337)
.|.-.++..
T Consensus 418 ei~LWDl~e 426 (519)
T KOG0293|consen 418 EIHLWDLEE 426 (519)
T ss_pred eeEEeecch
Confidence 888888764
No 188
>KOG1274|consensus
Probab=91.18 E-value=13 Score=38.57 Aligned_cols=119 Identities=11% Similarity=0.160 Sum_probs=68.0
Q ss_pred CCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
+...++.++|+|++.++.+..| |..+|.+++.+....+.-....+ ...
T Consensus 139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~-------------------------------~~~ 187 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE-------------------------------FIL 187 (933)
T ss_pred CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccc-------------------------------ccc
Confidence 4456999999997777766666 77778877665433321000000 000
Q ss_pred CCCCccEEEcCCC-cEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccc--cceeeEEEccCCCEEEEEeC
Q psy4771 191 PQIPNSVTVDSDG-MVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANL--HFANGVELSADESFVIVAET 266 (337)
Q Consensus 191 ~~~pn~v~vd~~G-~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~--~~p~gia~~~dg~~lyva~~ 266 (337)
-...+-+++.|+| .+.+... ++.|-.|++++.+..... +.+ ..-+.++|+|.|++| .+.+
T Consensus 188 s~i~~~~aW~Pk~g~la~~~~---------------d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi-AAs~ 251 (933)
T KOG1274|consen 188 SRICTRLAWHPKGGTLAVPPV---------------DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI-AAST 251 (933)
T ss_pred cceeeeeeecCCCCeEEeecc---------------CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE-eeec
Confidence 1234566778874 4433322 235666666665543222 221 125788999999643 3444
Q ss_pred CCCEEEEEEee
Q psy4771 267 MSSRVHRYYLK 277 (337)
Q Consensus 267 ~~~~I~~~~~~ 277 (337)
..+.|.+++.+
T Consensus 252 ~~g~I~vWnv~ 262 (933)
T KOG1274|consen 252 LDGQILVWNVD 262 (933)
T ss_pred cCCcEEEEecc
Confidence 56889988886
No 189
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=90.84 E-value=1.7 Score=37.93 Aligned_cols=78 Identities=14% Similarity=0.105 Sum_probs=40.4
Q ss_pred ccCceeccCcccCccEEEe-eCCeEEEEecCcEEEEEeC--CceeEE-----EecCccccCccccCccCCcceEEECCCC
Q psy4771 52 NNAEKLFENEIHGPEAVVK-HKGDLYMGVDGGHILKLSG--GKLVPV-----VKLGKDCYGFKYEQQCGRPLGIKFDKNG 123 (337)
Q Consensus 52 ~~~~~~~~g~~~~P~~i~~-~~g~ly~d~~~g~I~~~~~--~~~~~~-----~~~g~~~~~~~~~~~~~~P~Gl~~d~~G 123 (337)
...+++..|....=..|.+ ..|.||+=..+|+++|... ...... .++| ........-+.++++|
T Consensus 70 ~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG--------~~GW~~f~~vfa~~~G 141 (229)
T PF14517_consen 70 SGSKQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIG--------GTGWNDFDAVFAGPNG 141 (229)
T ss_dssp HH-EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE---------SSGGGEEEEEE-TTS
T ss_pred ccCcccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecc--------cCCCccceEEEeCCCc
Confidence 4456666663333347777 6899996667899999864 111111 1111 1222346679999999
Q ss_pred cEEEEECCCcEEEE
Q psy4771 124 ALHVADAYFGLYKV 137 (337)
Q Consensus 124 ~lyVad~~~gv~~v 137 (337)
.||+.+....+++.
T Consensus 142 vLY~i~~dg~~~~~ 155 (229)
T PF14517_consen 142 VLYAITPDGRLYRR 155 (229)
T ss_dssp -EEEEETTE-EEEE
T ss_pred cEEEEcCCCceEEe
Confidence 99998854435555
No 190
>KOG2096|consensus
Probab=90.77 E-value=6.7 Score=35.86 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=41.4
Q ss_pred ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 246 LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 246 ~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
...|--++++|+|+.|-++- +..|..|....++. .+.+-+...+....|+.+++|++.+++...
T Consensus 331 g~~p~RL~lsP~g~~lA~s~--gs~l~~~~se~g~~--~~~~e~~h~~~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 331 GSEPVRLELSPSGDSLAVSF--GSDLKVFASEDGKD--YPELEDIHSTTISSISYSSDGKYIATCGDR 394 (420)
T ss_pred CCCceEEEeCCCCcEEEeec--CCceEEEEcccCcc--chhHHHhhcCceeeEEecCCCcEEeeecce
Confidence 34677899999998666655 45777777543211 111111122457899999999988888766
No 191
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=90.64 E-value=6.4 Score=40.86 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=45.3
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccce-eeEEEccCCCEEEEEeCCCCEEE
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA-NGVELSADESFVIVAETMSSRVH 272 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p-~gia~~~dg~~lyva~~~~~~I~ 272 (337)
...++.+.+|.|-|... .|.|--||.-+......+.++..| -||.++.||++|+.+- ...|.
T Consensus 580 Fs~~aTt~~G~iavgs~---------------~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLl 642 (794)
T PF08553_consen 580 FSCFATTEDGYIAVGSN---------------KGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLL 642 (794)
T ss_pred ceEEEecCCceEEEEeC---------------CCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEE
Confidence 46778888888876665 356666665444445556666655 6999999998777665 44666
Q ss_pred EEEe
Q psy4771 273 RYYL 276 (337)
Q Consensus 273 ~~~~ 276 (337)
.++.
T Consensus 643 Li~t 646 (794)
T PF08553_consen 643 LIDT 646 (794)
T ss_pred EEEE
Confidence 6665
No 192
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=90.61 E-value=1.1 Score=42.83 Aligned_cols=66 Identities=23% Similarity=0.377 Sum_probs=36.0
Q ss_pred ceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCC--ceeeeec--------------CCCCCCCceeECCCCC-EEEEe
Q psy4771 248 FANGVELSADESFVIVAETMSSRVHRYYLKGPKQG--KSEVFID--------------GLPGLPDNVKRDSKGN-FLVSL 310 (337)
Q Consensus 248 ~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~--~~~~~~~--------------~~~g~Pdgi~~d~dG~-l~va~ 310 (337)
.+..|-+|-|.++|||+....+.|..|++++...- ..++++. .+.|.|.-+.+..||+ +||+.
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 46789999999999999999999999999874211 1122322 1334588899999996 99987
Q ss_pred cCC
Q psy4771 311 VCP 313 (337)
Q Consensus 311 ~~~ 313 (337)
.--
T Consensus 393 SLy 395 (461)
T PF05694_consen 393 SLY 395 (461)
T ss_dssp ---
T ss_pred ecc
Confidence 544
No 193
>KOG0316|consensus
Probab=90.60 E-value=9 Score=33.63 Aligned_cols=136 Identities=9% Similarity=0.045 Sum_probs=77.6
Q ss_pred EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCCCeEEEEeccccccC
Q psy4771 77 MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMDTEID 155 (337)
Q Consensus 77 ~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~~l~~~~~~~~ 155 (337)
+.-.+..++.||-...+.+.+|+ ...+..+.++|+.+..+.++-+.. .+..+|=.....+.+.
T Consensus 76 s~GgDk~v~vwDV~TGkv~Rr~r---------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ------- 139 (307)
T KOG0316|consen 76 SCGGDKAVQVWDVNTGKVDRRFR---------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ------- 139 (307)
T ss_pred cCCCCceEEEEEcccCeeeeecc---------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc-------
Confidence 44556667777765444455554 334667889998887777775543 3666665433222211
Q ss_pred CCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCC
Q psy4771 156 GAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK 235 (337)
Q Consensus 156 g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~ 235 (337)
++++. ......|.+. +...++ ...+|++.+||..
T Consensus 140 -------------------------ildea-----~D~V~Si~v~--~heIva--------------GS~DGtvRtydiR 173 (307)
T KOG0316|consen 140 -------------------------ILDEA-----KDGVSSIDVA--EHEIVA--------------GSVDGTVRTYDIR 173 (307)
T ss_pred -------------------------hhhhh-----cCceeEEEec--ccEEEe--------------eccCCcEEEEEee
Confidence 11110 1112223232 222222 3457899999987
Q ss_pred CCeeEEEeccccce-eeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 236 TKKNKVLIANLHFA-NGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 236 ~~~~~~~~~~~~~p-~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
.|+. ..+.+..| +.+.+++|++...++.. ...|.-++-+
T Consensus 174 ~G~l--~sDy~g~pit~vs~s~d~nc~La~~l-~stlrLlDk~ 213 (307)
T KOG0316|consen 174 KGTL--SSDYFGHPITSVSFSKDGNCSLASSL-DSTLRLLDKE 213 (307)
T ss_pred ccee--ehhhcCCcceeEEecCCCCEEEEeec-cceeeecccc
Confidence 7764 34455544 89999999987777664 4566656654
No 194
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=90.46 E-value=7.7 Score=37.44 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=35.4
Q ss_pred cEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCC--CEEEEEEeeCCC
Q psy4771 228 RLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS--SRVHRYYLKGPK 280 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~--~~I~~~~~~g~~ 280 (337)
.||.+|..+++...+......-..=.++|||+.|+++.... ..|++++.+|..
T Consensus 263 ~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 263 DIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred cEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 78999998887655443333333446789999987665433 468888877653
No 195
>KOG2110|consensus
Probab=90.45 E-value=15 Score=34.20 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=44.1
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEE-EcCCCCe-eEEEeccc--cceeeEEEccCCCEEEEEeCCCC
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQ-YNPKTKK-NKVLIANL--HFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~-~d~~~~~-~~~~~~~~--~~p~gia~~~dg~~lyva~~~~~ 269 (337)
...++++++|++..|-+. +|.|.| |...+|+ +....+|. ..-..++|++|+. +..+.+...
T Consensus 176 lAalafs~~G~llATASe--------------KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~Te 240 (391)
T KOG2110|consen 176 LAALAFSPDGTLLATASE--------------KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTE 240 (391)
T ss_pred eeEEEECCCCCEEEEecc--------------CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCC
Confidence 568999999998766654 334333 2223333 22233332 2346789999997 555566678
Q ss_pred EEEEEEeeC
Q psy4771 270 RVHRYYLKG 278 (337)
Q Consensus 270 ~I~~~~~~g 278 (337)
+|..|.++.
T Consensus 241 TVHiFKL~~ 249 (391)
T KOG2110|consen 241 TVHIFKLEK 249 (391)
T ss_pred eEEEEEecc
Confidence 999999863
No 196
>KOG0283|consensus
Probab=90.35 E-value=14 Score=37.73 Aligned_cols=147 Identities=12% Similarity=0.057 Sum_probs=84.3
Q ss_pred CCeEE-EEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEE
Q psy4771 72 KGDLY-MGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQL 147 (337)
Q Consensus 72 ~g~ly-~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l 147 (337)
|+..| ++.-||++--|+- .++.... ..-..-..+++.|+|...|.-.+.| .+.++..+-++..-
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~------------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWN------------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeeh------------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 66777 8899998877765 3333221 1113466899999997777777777 55556655544332
Q ss_pred eccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCC--cEEEEcCCCCccCceeeeeecC
Q psy4771 148 ISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG--MVYWSDSSTKYKSGLFEGLTSG 225 (337)
Q Consensus 148 ~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G--~lyvtd~~~~~~~~~~~~~~~~ 225 (337)
.... ...++ ........|+-+.+.- .|.||...+
T Consensus 489 ~~I~-~~~~K------------------------------k~~~~rITG~Q~~p~~~~~vLVTSnDS------------- 524 (712)
T KOG0283|consen 489 FHIR-LHNKK------------------------------KKQGKRITGLQFFPGDPDEVLVTSNDS------------- 524 (712)
T ss_pred eeEe-eccCc------------------------------cccCceeeeeEecCCCCCeEEEecCCC-------------
Confidence 2110 01111 0112235566655421 477766542
Q ss_pred CccEEEEcCCCCeeEEEecccc---ceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 226 SGRLIQYNPKTKKNKVLIANLH---FANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~~~~~~~---~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
+|-.||..+.++.....++. ...-..|+.||++|..+. ..+.|+..+.+
T Consensus 525 --rIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s-eDs~VYiW~~~ 576 (712)
T KOG0283|consen 525 --RIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS-EDSWVYIWKND 576 (712)
T ss_pred --ceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee-cCceEEEEeCC
Confidence 67777754444333333433 334567888998877766 66788877764
No 197
>PHA02713 hypothetical protein; Provisional
Probab=90.34 E-value=8 Score=38.75 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=36.2
Q ss_pred CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCC-CeeEEEeccccce---eeEEEccCCCEEEEEeCCCC--EEEEEE
Q psy4771 202 DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKT-KKNKVLIANLHFA---NGVELSADESFVIVAETMSS--RVHRYY 275 (337)
Q Consensus 202 ~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~-~~~~~~~~~~~~p---~gia~~~dg~~lyva~~~~~--~I~~~~ 275 (337)
+|.||+....... ......+.+|||.+ .+.+.+. .+..+ .|+++- +| .|||.-...+ .+.+|+
T Consensus 463 ~~~IYv~GG~~~~--------~~~~~~ve~Ydp~~~~~W~~~~-~m~~~r~~~~~~~~-~~-~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 463 KDDIYVVCDIKDE--------KNVKTCIFRYNTNTYNGWELIT-TTESRLSALHTILH-DN-TIMMLHCYESYMLQDTFN 531 (557)
T ss_pred CCEEEEEeCCCCC--------CccceeEEEecCCCCCCeeEcc-ccCcccccceeEEE-CC-EEEEEeeecceeehhhcC
Confidence 5789988543110 00112578999998 6765443 33322 344443 44 6998764333 566666
Q ss_pred ee
Q psy4771 276 LK 277 (337)
Q Consensus 276 ~~ 277 (337)
+.
T Consensus 532 ~~ 533 (557)
T PHA02713 532 VY 533 (557)
T ss_pred cc
Confidence 64
No 198
>PHA02713 hypothetical protein; Provisional
Probab=90.13 E-value=13 Score=37.34 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=30.1
Q ss_pred ccEEEEcCCCCeeEEEeccccc---eeeEEEccCCCEEEEEeCCC------CEEEEEEeeC
Q psy4771 227 GRLIQYNPKTKKNKVLIANLHF---ANGVELSADESFVIVAETMS------SRVHRYYLKG 278 (337)
Q Consensus 227 G~v~~~d~~~~~~~~~~~~~~~---p~gia~~~dg~~lyva~~~~------~~I~~~~~~g 278 (337)
..+.+|||.+.+.+.+. .+.. ..+++.- +| .|||.-... ..|.+|+++.
T Consensus 432 ~~ve~YDP~td~W~~v~-~m~~~r~~~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 432 NKVIRYDTVNNIWETLP-NFWTGTIRPGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred ceEEEECCCCCeEeecC-CCCcccccCcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCC
Confidence 46999999998876544 2222 2244433 44 699985421 3577888763
No 199
>KOG0771|consensus
Probab=90.12 E-value=7 Score=36.72 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=37.0
Q ss_pred eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEE
Q psy4771 243 IANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 309 (337)
Q Consensus 243 ~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va 309 (337)
...+..-..+++++||+++-+... .+.|..|+...- .....+-...-+...++++.+|-+.-++
T Consensus 278 ~~~~~siSsl~VS~dGkf~AlGT~-dGsVai~~~~~l--q~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 278 IKRFKSISSLAVSDDGKFLALGTM-DGSVAIYDAKSL--QRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred hhccCcceeEEEcCCCcEEEEecc-CCcEEEEEecee--eeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 334556788999999986666554 788888886431 1111111111134566666666554444
No 200
>KOG2048|consensus
Probab=90.06 E-value=22 Score=35.61 Aligned_cols=86 Identities=10% Similarity=0.191 Sum_probs=48.7
Q ss_pred cEEEEcCCCCeeEEEecc----ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecC-CCCCCCceeECC
Q psy4771 228 RLIQYNPKTKKNKVLIAN----LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDG-LPGLPDNVKRDS 302 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~~~----~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~-~~g~Pdgi~~d~ 302 (337)
+||++.++........+. +..+.-+.++-|++.++++.-....+..++++.........+... .-+...-|++.+
T Consensus 406 ~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss 485 (691)
T KOG2048|consen 406 KIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS 485 (691)
T ss_pred EEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC
Confidence 577777764322222222 223455677777777766665667788888875422221111211 112256788999
Q ss_pred CCCEEEEecCC
Q psy4771 303 KGNFLVSLVCP 313 (337)
Q Consensus 303 dG~l~va~~~~ 313 (337)
+|++.++..+.
T Consensus 486 dG~yiaa~~t~ 496 (691)
T KOG2048|consen 486 DGNYIAAISTR 496 (691)
T ss_pred CCCEEEEEecc
Confidence 99877777655
No 201
>KOG4378|consensus
Probab=89.85 E-value=9.4 Score=36.95 Aligned_cols=72 Identities=8% Similarity=0.098 Sum_probs=44.7
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEE
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHR 273 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~ 273 (337)
..||++.+-....+...+. +-+|+.||........-+.--.--..+||.++| .++++-..+++|+.
T Consensus 211 ~~gicfspsne~l~vsVG~-------------Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G-~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGY-------------DKKINIYDIRSQASTDRLTYSHPLSTVAFSECG-TYLCAGNSKGELIA 276 (673)
T ss_pred cCcceecCCccceEEEecc-------------cceEEEeecccccccceeeecCCcceeeecCCc-eEEEeecCCceEEE
Confidence 3577787754433333332 238888886543321111111123579999999 67788888999999
Q ss_pred EEeeCC
Q psy4771 274 YYLKGP 279 (337)
Q Consensus 274 ~~~~g~ 279 (337)
||+.+.
T Consensus 277 YD~R~~ 282 (673)
T KOG4378|consen 277 YDMRST 282 (673)
T ss_pred EecccC
Confidence 999763
No 202
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.61 E-value=0.84 Score=43.51 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=29.6
Q ss_pred CCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCe-eE----EEecc---------------cccee
Q psy4771 192 QIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK-NK----VLIAN---------------LHFAN 250 (337)
Q Consensus 192 ~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~-~~----~~~~~---------------~~~p~ 250 (337)
..+.||.++-|.+ |||+++.. |.|..||-.+-. .+ +.+.+ ...|+
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~--------------GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLH--------------GDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp -----EEE-TTS-EEEEEETTT--------------TEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred CceEeEEEccCCCEEEEEcccC--------------CcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 4578999998876 99999873 455566543211 10 11111 12578
Q ss_pred eEEEccCCCEEEEEeCC
Q psy4771 251 GVELSADESFVIVAETM 267 (337)
Q Consensus 251 gia~~~dg~~lyva~~~ 267 (337)
-|.+|-||++|||+++-
T Consensus 378 MvqlS~DGkRlYvTnSL 394 (461)
T PF05694_consen 378 MVQLSLDGKRLYVTNSL 394 (461)
T ss_dssp -EEE-TTSSEEEEE---
T ss_pred eEEEccCCeEEEEEeec
Confidence 89999999999999853
No 203
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.41 E-value=15 Score=32.70 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=85.3
Q ss_pred cCccEEEeeCCeEEEEecCcEEEEEeCC--ceeEEEecCccc-cCcc-ccCccCCcceEEECCCCcEEEE---ECCCc--
Q psy4771 63 HGPEAVVKHKGDLYMGVDGGHILKLSGG--KLVPVVKLGKDC-YGFK-YEQQCGRPLGIKFDKNGALHVA---DAYFG-- 133 (337)
Q Consensus 63 ~~P~~i~~~~g~ly~d~~~g~I~~~~~~--~~~~~~~~g~~~-~~~~-~~~~~~~P~Gl~~d~~G~lyVa---d~~~g-- 133 (337)
.|+-.++..+...|--....+|+|++-. .......+.... .+.. .......=..+++|..| |||. ....|
T Consensus 70 ~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~~g~i 148 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDNNGNI 148 (250)
T ss_pred ccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCCCCcE
Confidence 3555555444444466678899999873 333122232111 0000 00111112378998887 4443 33343
Q ss_pred -EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCC
Q psy4771 134 -LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST 212 (337)
Q Consensus 134 -v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~ 212 (337)
|.++|+++-.+..-... ... .-..-| ++---|.||++++..
T Consensus 149 vvskld~~tL~v~~tw~T--~~~----------------------------------k~~~~n--aFmvCGvLY~~~s~~ 190 (250)
T PF02191_consen 149 VVSKLDPETLSVEQTWNT--SYP----------------------------------KRSAGN--AFMVCGVLYATDSYD 190 (250)
T ss_pred EEEeeCcccCceEEEEEe--ccC----------------------------------chhhcc--eeeEeeEEEEEEECC
Confidence 67788876665544321 111 111122 222348899999874
Q ss_pred CccCceeeeeecCCccE-EEEcCCCCeeEEEecc----ccceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 213 KYKSGLFEGLTSGSGRL-IQYNPKTKKNKVLIAN----LHFANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 213 ~~~~~~~~~~~~~~G~v-~~~d~~~~~~~~~~~~----~~~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
.. ..+| +.||..+++...+.-. ......|..+|..+.||+=|. +.+..|++
T Consensus 191 ~~-----------~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~--G~~v~Y~v 246 (250)
T PF02191_consen 191 TR-----------DTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDN--GYQVTYDV 246 (250)
T ss_pred CC-----------CcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEEC--CeEEEEEE
Confidence 31 1233 6788877755433222 234456888898889999884 46666665
No 204
>KOG0319|consensus
Probab=89.26 E-value=7.1 Score=39.42 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=78.3
Q ss_pred EEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCcc
Q psy4771 117 IKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNS 196 (337)
Q Consensus 117 l~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~ 196 (337)
++++++|...+|.-.+.|..+|.+++.+..... . . .......+
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~---~-~---------------------------------ed~d~ita 67 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSG---S-N---------------------------------EDEDEITA 67 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccC---C-c---------------------------------cchhhhhe
Confidence 899999977777655668899998887751111 0 0 02334678
Q ss_pred EEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc-ccce-eeEEEccCCCEEEEEeCCCCEEEEE
Q psy4771 197 VTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN-LHFA-NGVELSADESFVIVAETMSSRVHRY 274 (337)
Q Consensus 197 v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~-~~~p-~gia~~~dg~~lyva~~~~~~I~~~ 274 (337)
+++++|+...++-..+. .+-.|...+++....... ...| -.++++|-+ .|..+-...++|.+.
T Consensus 68 ~~l~~d~~~L~~a~rs~--------------llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VW 132 (775)
T KOG0319|consen 68 LALTPDEEVLVTASRSQ--------------LLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVW 132 (775)
T ss_pred eeecCCccEEEEeeccc--------------eEEEEEcccchHhHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEE
Confidence 89999876444443321 222333334533222211 2233 578999888 677777777899999
Q ss_pred EeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 275 YLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 275 ~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
++++.. ...-..+.||....+.+.++-+
T Consensus 133 di~~~~---~th~fkG~gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 133 DIKNGY---CTHSFKGHGGVVSSLLFHPHWN 160 (775)
T ss_pred EeeCCE---EEEEecCCCceEEEEEeCCccc
Confidence 987542 2222233555555555555443
No 205
>KOG0292|consensus
Probab=89.19 E-value=19 Score=37.52 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=38.3
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc--EEEEE
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG--LYKVN 138 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g--v~~vd 138 (337)
.+.|.+...++.|-.||..+.+.+..|.. .-+|=+-++..|..+||.|--..| |++++
T Consensus 262 q~lIlSnsEDksirVwDm~kRt~v~tfrr---------endRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 262 QDLILSNSEDKSIRVWDMTKRTSVQTFRR---------ENDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred cceeEecCCCccEEEEecccccceeeeec---------cCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 45666888888888888765544444432 225667789999999998864455 44443
No 206
>PRK13684 Ycf48-like protein; Provisional
Probab=88.82 E-value=20 Score=33.34 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=12.3
Q ss_pred CCCccEEEcCCCcEEEEcC
Q psy4771 192 QIPNSVTVDSDGMVYWSDS 210 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~ 210 (337)
...+++++.++|++|+...
T Consensus 215 ~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred ccceeeeEcCCCCEEEEec
Confidence 4456777777777666543
No 207
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.81 E-value=32 Score=35.90 Aligned_cols=185 Identities=14% Similarity=0.140 Sum_probs=85.5
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcce-------EEECCCCcEEEEEC---------CCc-E
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLG-------IKFDKNGALHVADA---------YFG-L 134 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~G-------l~~d~~G~lyVad~---------~~g-v 134 (337)
++.||+...+++++.+|..+.+....++.+..--+.......+.+ -.+ -++.+||..+ ..| |
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-AGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEE-ECCEEEEEecccccccccCCCcEE
Confidence 347887778999999987444444344432110000000011111 111 1457777632 134 8
Q ss_pred EEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCC-CcEEEEcCCCC
Q psy4771 135 YKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSD-GMVYWSDSSTK 213 (337)
Q Consensus 135 ~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~-G~lyvtd~~~~ 213 (337)
+.+|.++|+...-...... .... | -..|. . +.....+.=.-+++|++ |.+|+......
T Consensus 339 ~A~Da~TGkl~W~~~~g~p-~~~~---~-----~~~g~------~------~~~gg~n~W~~~s~D~~~glvy~ptGn~~ 397 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNP-DPTA---P-----PAPGE------T------YTRNTPNSWSVASYDEKLGLVYLPMGNQT 397 (764)
T ss_pred EEEECCCCcEeeEEecCCC-Cccc---C-----CCCCC------E------eccCCCCccCceEEcCCCCeEEEeCCCcc
Confidence 8899999988766542100 0000 0 00000 0 00001111245678875 56887443211
Q ss_pred --c-cCceeeeeecCCccEEEEcCCCCeeEEEecc-------ccc---eeeEEEcc-CCC--EEEEEeCCCCEEEEEEee
Q psy4771 214 --Y-KSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN-------LHF---ANGVELSA-DES--FVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 214 --~-~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~-------~~~---p~gia~~~-dg~--~lyva~~~~~~I~~~~~~ 277 (337)
+ ..........-.+.|+.+|.+||+.+-.... ... |.=+.+.. ||+ .+.+.-+.++.++++|.+
T Consensus 398 pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~ 477 (764)
T TIGR03074 398 PDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRR 477 (764)
T ss_pred ccccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECC
Confidence 1 0000001122356899999999987543321 122 22222332 553 134444456788888865
Q ss_pred C
Q psy4771 278 G 278 (337)
Q Consensus 278 g 278 (337)
.
T Consensus 478 t 478 (764)
T TIGR03074 478 T 478 (764)
T ss_pred C
Confidence 3
No 208
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=88.73 E-value=3.1 Score=36.31 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=38.4
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEE-cCCCCe-------eEEEeccccceeeEEEccCCCEEE
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQY-NPKTKK-------NKVLIANLHFANGVELSADESFVI 262 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~-d~~~~~-------~~~~~~~~~~p~gia~~~dg~~ly 262 (337)
.+...-+..+++|.||.-+.. |++++. .|+.+. ..+...+...+.-|.++++| .||
T Consensus 129 W~~f~~vfa~~~GvLY~i~~d---------------g~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g-~L~ 192 (229)
T PF14517_consen 129 WNDFDAVFAGPNGVLYAITPD---------------GRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDG-NLW 192 (229)
T ss_dssp GGGEEEEEE-TTS-EEEEETT---------------E-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS--EE
T ss_pred CccceEEEeCCCccEEEEcCC---------------CceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCC-cEE
Confidence 344567778889988866643 466665 333321 11122345568889999998 588
Q ss_pred EEeCCCCEEEEEEe
Q psy4771 263 VAETMSSRVHRYYL 276 (337)
Q Consensus 263 va~~~~~~I~~~~~ 276 (337)
..+ ..+.|+|+..
T Consensus 193 ~V~-~~G~lyr~~~ 205 (229)
T PF14517_consen 193 AVK-SNGKLYRGRP 205 (229)
T ss_dssp EE--ETTEEEEES-
T ss_pred EEe-cCCEEeccCC
Confidence 774 4678887764
No 209
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=88.70 E-value=0.33 Score=29.57 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=17.3
Q ss_pred CCCccEEEcCCCcEEEEcCC
Q psy4771 192 QIPNSVTVDSDGMVYWSDSS 211 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~ 211 (337)
..+++|++|++|++|++-.+
T Consensus 13 ~~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eeEEEEEECCCCCEEEEEee
Confidence 35899999999999998765
No 210
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=88.65 E-value=0.44 Score=29.04 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=16.5
Q ss_pred CCcceEEECCCCcEEEEEC
Q psy4771 112 GRPLGIKFDKNGALHVADA 130 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~ 130 (337)
..+.+|++|++|++||+-.
T Consensus 13 ~~~~~IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGY 31 (38)
T ss_pred eeEEEEEECCCCCEEEEEe
Confidence 4589999999999999953
No 211
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=88.62 E-value=15 Score=35.00 Aligned_cols=113 Identities=12% Similarity=0.141 Sum_probs=53.9
Q ss_pred cEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE--EEeccccc---eeeEEEccCCCEEEEEeCCC-
Q psy4771 196 SVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK--VLIANLHF---ANGVELSADESFVIVAETMS- 268 (337)
Q Consensus 196 ~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~--~~~~~~~~---p~gia~~~dg~~lyva~~~~- 268 (337)
.++..+||+ +|.+......... .....-.|+++...+...+ .+...-.. --++..++|+++|++.....
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~----~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~ 249 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTS----DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT 249 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-----CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS
T ss_pred eEEEeCCCCEEEEEEeCcccccc----cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc
Confidence 388888876 5555543221000 0000125777776555432 44433222 34788999999988755443
Q ss_pred --CEEEEEEeeCC--CCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 269 --SRVHRYYLKGP--KQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 269 --~~I~~~~~~g~--~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+.|+.+++... .......+....++.-..+. ...+.+|+-....
T Consensus 250 ~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~-~~~~~~yi~Tn~~ 297 (414)
T PF02897_consen 250 SESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD-HHGDRLYILTNDD 297 (414)
T ss_dssp SEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE-EETTEEEEEE-TT
T ss_pred cCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE-ccCCEEEEeeCCC
Confidence 46777777543 12233444433333111121 2244577666544
No 212
>KOG0973|consensus
Probab=88.41 E-value=19 Score=37.90 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=59.8
Q ss_pred CCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
+.-..++++|++.+.|+-+. +.|...+..+.+...... | -
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~------~---------------------------------H 170 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR------G---------------------------------H 170 (942)
T ss_pred CccceeccCCCccEEEEecccceEEEEccccceeeeeee------c---------------------------------c
Confidence 34557899999988888654 447777766543222221 1 1
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec-c------ccceeeEEEccCCCEEEE
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-N------LHFANGVELSADESFVIV 263 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-~------~~~p~gia~~~dg~~lyv 263 (337)
...+-|+++||-|..+.+.+..+ .=.||+.+ +-.++.... . -.+-.-+-++|||.+|-+
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDr------------tikvwrt~--dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las 236 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDR------------TLKVWRTS--DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLAS 236 (942)
T ss_pred cccccceEECCccCeeeeecCCc------------eEEEEEcc--cceeeEeeccchhhCCCcceeeecccCCCcCeecc
Confidence 34578899999887655544422 01334422 222222221 1 223456778899988877
Q ss_pred EeCCCC
Q psy4771 264 AETMSS 269 (337)
Q Consensus 264 a~~~~~ 269 (337)
....++
T Consensus 237 ~nA~n~ 242 (942)
T KOG0973|consen 237 PNAVNG 242 (942)
T ss_pred hhhccC
Confidence 776543
No 213
>KOG2139|consensus
Probab=88.34 E-value=8.9 Score=35.65 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=64.4
Q ss_pred CCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 192 QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
.....+...+||..+++.+... -.+...|+++++...+. .++..-.-+-++|||+.|+.+... +
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gs-------------ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d--a 260 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGS-------------SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD--A 260 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCc-------------ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc--c
Confidence 3456677778888887766432 26777888888765555 445555668899999877777644 6
Q ss_pred EEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC-EEEEecC
Q psy4771 271 VHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVC 312 (337)
Q Consensus 271 I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~ 312 (337)
+.+++-... .-..+.+.- .+|.-.+-+-+++|. +..+...
T Consensus 261 vfrlw~e~q-~wt~erw~l-gsgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 261 VFRLWQENQ-SWTKERWIL-GSGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred eeeeehhcc-cceecceec-cCCceeeeeecCCCCEEEEEEcC
Confidence 666663221 122233332 345666777888886 4444433
No 214
>KOG2110|consensus
Probab=88.16 E-value=8.1 Score=35.87 Aligned_cols=61 Identities=21% Similarity=0.323 Sum_probs=40.6
Q ss_pred eEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc--EEEEEcCCCe
Q psy4771 74 DLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG--LYKVNVTTGQ 143 (337)
Q Consensus 74 ~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g--v~~vd~~~g~ 143 (337)
..| .+...|.|+.|+..+++.+..+. ..-+.-..|+|+++|.+..+.+..| |+.+...+|+
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~I~---------aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~ 207 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNTIN---------AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ 207 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeEEE---------ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc
Confidence 345 56667888888876666554442 2224456899999999998877777 5555655554
No 215
>KOG2919|consensus
Probab=87.94 E-value=22 Score=32.72 Aligned_cols=28 Identities=4% Similarity=0.165 Sum_probs=23.7
Q ss_pred eeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 250 NGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 250 ~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
.-+++.+||++||+.......|...++.
T Consensus 254 ThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 254 THLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred eeEEeccCcCeecccccCCCeEEEEeeh
Confidence 4467889999999999888899998885
No 216
>PHA02790 Kelch-like protein; Provisional
Probab=87.88 E-value=29 Score=34.06 Aligned_cols=47 Identities=6% Similarity=0.109 Sum_probs=26.7
Q ss_pred cEEEEcCCCCeeEEEeccccce---eeEEEccCCCEEEEEeCCC-----CEEEEEEee
Q psy4771 228 RLIQYNPKTKKNKVLIANLHFA---NGVELSADESFVIVAETMS-----SRVHRYYLK 277 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~~~~~~p---~gia~~~dg~~lyva~~~~-----~~I~~~~~~ 277 (337)
.+.+|||++++.+.+. .+..| .|+++- +| .|||.-... +.|.+|++.
T Consensus 416 ~~e~ydp~~~~W~~~~-~m~~~r~~~~~~v~-~~-~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 416 NAEFYCESSNTWTLID-DPIYPRDNPELIIV-DN-KLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred ceEEecCCCCcEeEcC-CCCCCccccEEEEE-CC-EEEEECCcCCCcccceEEEEECC
Confidence 4567899888776554 33322 344443 44 688875421 345566653
No 217
>KOG3881|consensus
Probab=87.86 E-value=7.8 Score=36.23 Aligned_cols=63 Identities=10% Similarity=0.001 Sum_probs=40.2
Q ss_pred CeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcCCCeE
Q psy4771 73 GDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTGQT 144 (337)
Q Consensus 73 g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~ 144 (337)
..-| +.+..+++-.||+ .+.+++..|... -..-..+..+++| .||+++....+..||..++++
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~---------E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFL---------ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccc---------cCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence 3444 7788888888887 334445444211 0113468888998 677777555699999876654
No 218
>KOG0772|consensus
Probab=87.58 E-value=30 Score=33.86 Aligned_cols=150 Identities=13% Similarity=0.145 Sum_probs=77.6
Q ss_pred CcceEEECCCCcEEEEECCCc-EEEEEcCCCeEE--EEeccccccCCCCCCCCCceeeCCCCCcc----ccc--ceeeec
Q psy4771 113 RPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTE--QLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTE--QLISMD 183 (337)
Q Consensus 113 ~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~--~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~--~v~~~~ 183 (337)
.|...+++++|.++.+--..| |...+..+-.+. ..+. .++..|. -=..|+++.||+++ .++ .+..+.
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk-~AH~~g~---~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK-DAHLPGQ---DITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEee-eccCCCC---ceeEEEeccccchhhhccCCCceeeeecc
Confidence 467889999998855533344 555554222222 1221 1122322 12458999999998 233 333333
Q ss_pred ccc------CCCC-CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEc
Q psy4771 184 TEI------DGAK-PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELS 255 (337)
Q Consensus 184 ~~~------~~~~-~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~ 255 (337)
..- .+.+ ..--.+.+++|+..|.+|-.+.. .....|.|+.||+.+-+...-+ -.-....-+.|.
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~--------~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh 466 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAP--------NGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH 466 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCceEEEeccccc--------CCCCCceEEEEeccceeeEEEecCCCceEEEEeec
Confidence 110 0111 11235888999999999887632 1234567888887544321111 011122345566
Q ss_pred cCCCEEEEEeCCCCEEEEEE
Q psy4771 256 ADESFVIVAETMSSRVHRYY 275 (337)
Q Consensus 256 ~dg~~lyva~~~~~~I~~~~ 275 (337)
|.=+.|++.... +.+++|.
T Consensus 467 pkLNQi~~gsgd-G~~~vyY 485 (641)
T KOG0772|consen 467 PKLNQIFAGSGD-GTAHVYY 485 (641)
T ss_pred chhhheeeecCC-CceEEEE
Confidence 655556655433 4555543
No 219
>KOG4441|consensus
Probab=87.57 E-value=16 Score=36.79 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=62.0
Q ss_pred eEEECCCCcEEEEECCC-------cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCC
Q psy4771 116 GIKFDKNGALHVADAYF-------GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDG 188 (337)
Q Consensus 116 Gl~~d~~G~lyVad~~~-------gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~ 188 (337)
|++. -+|.||++-... .+..+||.+++-+.+.....
T Consensus 422 gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~------------------------------------ 464 (571)
T KOG4441|consen 422 GVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT------------------------------------ 464 (571)
T ss_pred EEEE-ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc------------------------------------
Confidence 4443 367999995421 27788998887776654211
Q ss_pred CCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccc---eeeEEEccCCCEEEEEe
Q psy4771 189 AKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHF---ANGVELSADESFVIVAE 265 (337)
Q Consensus 189 ~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~---p~gia~~~dg~~lyva~ 265 (337)
...-.++++- +|.||+.-..... ...-.|.+|||.+.+.+.+. .+.. ..|++.. +..||+..
T Consensus 465 --~R~~~g~a~~-~~~iYvvGG~~~~---------~~~~~VE~ydp~~~~W~~v~-~m~~~rs~~g~~~~--~~~ly~vG 529 (571)
T KOG4441|consen 465 --RRSGFGVAVL-NGKIYVVGGFDGT---------SALSSVERYDPETNQWTMVA-PMTSPRSAVGVVVL--GGKLYAVG 529 (571)
T ss_pred --ccccceEEEE-CCEEEEECCccCC---------CccceEEEEcCCCCceeEcc-cCccccccccEEEE--CCEEEEEe
Confidence 1122344444 5689977654220 01114899999998887653 3332 2344443 44699887
Q ss_pred CCC-----CEEEEEEe
Q psy4771 266 TMS-----SRVHRYYL 276 (337)
Q Consensus 266 ~~~-----~~I~~~~~ 276 (337)
... +.|..|++
T Consensus 530 G~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 530 GFDGNNNLNTVECYDP 545 (571)
T ss_pred cccCccccceeEEcCC
Confidence 532 34555554
No 220
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.53 E-value=31 Score=36.00 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=42.3
Q ss_pred eCCeEEEEecCcEEEEEeCCceeEEEecCc-----------cccCccccCccCCcceE--------EECCCCcEEEEECC
Q psy4771 71 HKGDLYMGVDGGHILKLSGGKLVPVVKLGK-----------DCYGFKYEQQCGRPLGI--------KFDKNGALHVADAY 131 (337)
Q Consensus 71 ~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~P~Gl--------~~d~~G~lyVad~~ 131 (337)
.++.+|+...+++++.+|..+.+.+-++.- .|++..... .|.+- -...++++|+....
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~---~p~~~~~~~~~~~p~~~~~rV~~~T~D 269 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYD---APAAAAGPAAPAAPADCARRIILPTSD 269 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEec---CCcccccccccccccccCCEEEEecCC
Confidence 589999888889999999743333322210 122211000 01000 00123488888765
Q ss_pred CcEEEEEcCCCeEEEEe
Q psy4771 132 FGLYKVNVTTGQTEQLI 148 (337)
Q Consensus 132 ~gv~~vd~~~g~~~~l~ 148 (337)
..++.+|.++|+...-.
T Consensus 270 g~LiALDA~TGk~~W~f 286 (764)
T TIGR03074 270 ARLIALDADTGKLCEDF 286 (764)
T ss_pred CeEEEEECCCCCEEEEe
Confidence 66999999988876543
No 221
>KOG0772|consensus
Probab=87.47 E-value=30 Score=33.81 Aligned_cols=193 Identities=11% Similarity=0.077 Sum_probs=100.3
Q ss_pred CCeEEEEecCcEEEEEeCCce-eEEEecC--ccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCCCeEEEE
Q psy4771 72 KGDLYMGVDGGHILKLSGGKL-VPVVKLG--KDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTGQTEQL 147 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~-~~~~~~g--~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~~l 147 (337)
+-.+|++..+..|..||-.+. ..+..|. +.|+ +..-+.+.+.+.|..+++-+++ ....+|.+|-++..+
T Consensus 179 GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E-------~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~ 251 (641)
T KOG0772|consen 179 GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCE-------THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEF 251 (641)
T ss_pred CceeeeccccceEEEEecccccccchhhhccCccc-------ccccceeeecCCCCeEEEEecCcceeEEccCCceeeee
Confidence 345667777777777775221 1111121 1222 2334678888888555554444 477788887666655
Q ss_pred eccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC-CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecC
Q psy4771 148 ISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK-PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSG 225 (337)
Q Consensus 148 ~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~-~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~ 225 (337)
....+-+ .+....+. ....++..+.|+.. .++|.+. +.
T Consensus 252 ~KGDQYI----------------------------~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~------------Dg 291 (641)
T KOG0772|consen 252 SKGDQYI----------------------------RDMYNTKGHIAELTCGCWHPDNKEEFLTCSY------------DG 291 (641)
T ss_pred eccchhh----------------------------hhhhccCCceeeeeccccccCcccceEEecC------------CC
Confidence 4311100 00000000 12234455555432 4444432 12
Q ss_pred CccEEEEcCCCCeeEEEecc-----ccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec--CCCC-CCCc
Q psy4771 226 SGRLIQYNPKTKKNKVLIAN-----LHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID--GLPG-LPDN 297 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~~~~~-----~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~--~~~g-~Pdg 297 (337)
.-|||-++....+..++... -..|...+|++||+ ++.+....+.|+..+. +....+....+. +.+| -...
T Consensus 292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Its 369 (641)
T KOG0772|consen 292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITS 369 (641)
T ss_pred cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeec-CCcccccceEeeeccCCCCceeE
Confidence 22566655444444443321 23567889999996 5666677788887775 332222222221 2332 2567
Q ss_pred eeECCCCCEEEEecCC
Q psy4771 298 VKRDSKGNFLVSLVCP 313 (337)
Q Consensus 298 i~~d~dG~l~va~~~~ 313 (337)
|++..||++..+-...
T Consensus 370 i~FS~dg~~LlSRg~D 385 (641)
T KOG0772|consen 370 ISFSYDGNYLLSRGFD 385 (641)
T ss_pred EEeccccchhhhccCC
Confidence 8899999877766443
No 222
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=87.34 E-value=20 Score=31.56 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=29.2
Q ss_pred CCcceEEECCC-CcEEEEECCCcEEEEEcCCCeEEEE
Q psy4771 112 GRPLGIKFDKN-GALHVADAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 112 ~~P~Gl~~d~~-G~lyVad~~~gv~~vd~~~g~~~~l 147 (337)
.+-.||.+-|. |.||-.....+|+.||+.+|..+.+
T Consensus 27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~v 63 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPV 63 (236)
T ss_pred CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEe
Confidence 45668888776 7999886667799999999987776
No 223
>KOG0313|consensus
Probab=87.24 E-value=26 Score=32.84 Aligned_cols=165 Identities=13% Similarity=0.164 Sum_probs=101.0
Q ss_pred CcccCccEEEe-eCCeEE-EEecCcEEEEEe-C-C---ceeEEEe-------c---CccccC-ccccCccCCcceEEECC
Q psy4771 60 NEIHGPEAVVK-HKGDLY-MGVDGGHILKLS-G-G---KLVPVVK-------L---GKDCYG-FKYEQQCGRPLGIKFDK 121 (337)
Q Consensus 60 g~~~~P~~i~~-~~g~ly-~d~~~g~I~~~~-~-~---~~~~~~~-------~---g~~~~~-~~~~~~~~~P~Gl~~d~ 121 (337)
|--..-++|.+ .++..+ ++..+..|--|+ + . ..+.+.. . +....+ .-.+..-.....+.+.+
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 33335577776 667777 777787776676 1 1 1111100 0 000000 00012223345788888
Q ss_pred CCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcC
Q psy4771 122 NGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDS 201 (337)
Q Consensus 122 ~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~ 201 (337)
.+.+|-+...|.|...|..++....-.. .-...+++...+
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~~~~----------------------------------------~~ksl~~i~~~~ 310 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKSTLT----------------------------------------TNKSLNCISYSP 310 (423)
T ss_pred CCceEeecccceEEEEEeecccceeeee----------------------------------------cCcceeEeeccc
Confidence 8899988888899999988665432221 122357777777
Q ss_pred CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe----ccccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 202 DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI----ANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 202 ~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~----~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
.-++..+..+.. .+..+||.++.-..+. ..-.+-.++-++|...+.+++-+..+.+...|+.
T Consensus 311 ~~~Ll~~gssdr--------------~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 311 LSKLLASGSSDR--------------HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred ccceeeecCCCC--------------ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 666776666533 5667788876543332 2334677899999888999999999999988875
Q ss_pred C
Q psy4771 278 G 278 (337)
Q Consensus 278 g 278 (337)
.
T Consensus 377 S 377 (423)
T KOG0313|consen 377 S 377 (423)
T ss_pred c
Confidence 4
No 224
>KOG3914|consensus
Probab=86.98 E-value=3.8 Score=38.25 Aligned_cols=52 Identities=13% Similarity=0.322 Sum_probs=34.6
Q ss_pred cCCccEEEEcCCC---CeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 224 SGSGRLIQYNPKT---KKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 224 ~~~G~v~~~d~~~---~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
+..|-++.+|.-. +..+.++..+..-..|++++|+++|.-+|... .|++.+.
T Consensus 126 dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDE-kIRvs~y 180 (390)
T KOG3914|consen 126 DKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDE-KIRVSRY 180 (390)
T ss_pred eecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCc-eEEEEec
Confidence 3445555555332 55556677778889999999999999999753 3444333
No 225
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=86.84 E-value=6.6 Score=36.72 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=38.3
Q ss_pred cEEEcCCC-cEEEEcCCCCccCceeeeeecCCccEEEEcCC-CCeeEEEeccccceeeEEEccCCCEEEEEe
Q psy4771 196 SVTVDSDG-MVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK-TKKNKVLIANLHFANGVELSADESFVIVAE 265 (337)
Q Consensus 196 ~v~vd~~G-~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~-~~~~~~~~~~~~~p~gia~~~dg~~lyva~ 265 (337)
-+.+|+++ .|||+..... ...-.||+++.+ +++.+.+-.....-..+.++|||+++..+-
T Consensus 285 i~~~d~~~~~iyf~a~~~~----------p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 285 ILGWDEDNNRIYFTANGDN----------PGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEECTSSEEEEEESSGG----------TTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred cceEcCCCCEEEEEecCCC----------CCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 45677765 5998877522 112378999988 777766554332225899999998665544
No 226
>KOG0265|consensus
Probab=86.41 E-value=16 Score=33.19 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=47.8
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEE-EeccccceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKV-LIANLHFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
...++...+||+..++....+ +|..+|.++|+... ....-.+-|.++...-|-.+..+-+..+++
T Consensus 92 AVM~l~~~~d~s~i~S~gtDk--------------~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 92 AVMELHGMRDGSHILSCGTDK--------------TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTL 157 (338)
T ss_pred eeEeeeeccCCCEEEEecCCc--------------eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceE
Confidence 457778888888766665533 88888888886532 333445667776666666677766667777
Q ss_pred EEEEee
Q psy4771 272 HRYYLK 277 (337)
Q Consensus 272 ~~~~~~ 277 (337)
..+|+.
T Consensus 158 kl~D~R 163 (338)
T KOG0265|consen 158 KLWDIR 163 (338)
T ss_pred EEEeec
Confidence 777764
No 227
>KOG0275|consensus
Probab=86.17 E-value=8.3 Score=35.23 Aligned_cols=24 Identities=4% Similarity=0.205 Sum_probs=12.9
Q ss_pred cceEEECCCCcEEEEECCCcEEEE
Q psy4771 114 PLGIKFDKNGALHVADAYFGLYKV 137 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~gv~~v 137 (337)
...+.|..|+.-+.+.+.....++
T Consensus 309 vt~l~FSrD~SqiLS~sfD~tvRi 332 (508)
T KOG0275|consen 309 VTCLSFSRDNSQILSASFDQTVRI 332 (508)
T ss_pred eeEEEEccCcchhhcccccceEEE
Confidence 456788888733333333444444
No 228
>KOG3881|consensus
Probab=86.15 E-value=5.6 Score=37.14 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=56.6
Q ss_pred ecCCccEEEEcCCCCeeEEEe--ccccc-eeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCcee
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLI--ANLHF-ANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVK 299 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~--~~~~~-p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~ 299 (337)
....+.|-.||+..+. +.+. +-... -..+++.|+|++||++++. +.+..||..+.++.. .+..+..|-+.+|.
T Consensus 222 ~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~kl~g--~~~kg~tGsirsih 297 (412)
T KOG3881|consen 222 ITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGGKLLG--CGLKGITGSIRSIH 297 (412)
T ss_pred EecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccCceeec--cccCCccCCcceEE
Confidence 4455688999988543 2322 11222 2568889999999999974 678999987654322 22344556788888
Q ss_pred ECCCCCEEEEecC
Q psy4771 300 RDSKGNFLVSLVC 312 (337)
Q Consensus 300 ~d~dG~l~va~~~ 312 (337)
.++.+.+..+..-
T Consensus 298 ~hp~~~~las~GL 310 (412)
T KOG3881|consen 298 CHPTHPVLASCGL 310 (412)
T ss_pred EcCCCceEEeecc
Confidence 8887766665543
No 229
>KOG0268|consensus
Probab=86.12 E-value=19 Score=33.62 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=43.5
Q ss_pred cccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 245 NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 245 ~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
+...-..+-++|-+..|..+....+.|..||+.-...-. .+..+ -.+.+|+..+++..+|+....
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~---mRTN~IswnPeafnF~~a~ED 250 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVILT---MRTNTICWNPEAFNFVAANED 250 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eeeee---ccccceecCccccceeecccc
Confidence 444446788888887888888788899999985332222 22222 246788888888777776554
No 230
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=86.11 E-value=0.9 Score=24.51 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=13.4
Q ss_pred CCceeECCCCCEEEEec
Q psy4771 295 PDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 295 Pdgi~~d~dG~l~va~~ 311 (337)
...|..|++|++|++..
T Consensus 7 I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 7 IYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEEE-TTSCEEEEET
T ss_pred EEEEEEcCCcCEEEEeC
Confidence 45788999999999974
No 231
>KOG0273|consensus
Probab=85.50 E-value=36 Score=32.82 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=81.2
Q ss_pred CCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~ 190 (337)
....++++..+|.+.++-.+.| ++.++..++.+..+.. ..|
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~----Hkg---------------------------------- 277 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQ----HKG---------------------------------- 277 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhc----cCC----------------------------------
Confidence 4467999999999999987788 5555666655555432 111
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccce-eeEEEccCCCEEEEEeCCCC
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA-NGVELSADESFVIVAETMSS 269 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p-~gia~~~dg~~lyva~~~~~ 269 (337)
-.-.+....+|+...+ ...+|++..+|..+|+...-..--..| -.|.+-.+. =+++....+
T Consensus 278 --PI~slKWnk~G~yilS--------------~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~ 339 (524)
T KOG0273|consen 278 --PIFSLKWNKKGTYILS--------------GGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--EFATSSTDG 339 (524)
T ss_pred --ceEEEEEcCCCCEEEe--------------ccCCccEEEEeccCceEEEeeeeccCCccceEEecCc--eEeecCCCc
Confidence 1234555566653322 233567778887777665433322233 234443333 456666678
Q ss_pred EEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEec
Q psy4771 270 RVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLV 311 (337)
Q Consensus 270 ~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~ 311 (337)
+|+++.++..+. ...|.. ..|-...|..++.|.|..++.
T Consensus 340 ~i~V~kv~~~~P--~~t~~G-H~g~V~alk~n~tg~LLaS~S 378 (524)
T KOG0273|consen 340 CIHVCKVGEDRP--VKTFIG-HHGEVNALKWNPTGSLLASCS 378 (524)
T ss_pred eEEEEEecCCCc--ceeeec-ccCceEEEEECCCCceEEEec
Confidence 888888865322 233443 334456677776666655553
No 232
>KOG0265|consensus
Probab=85.20 E-value=29 Score=31.52 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=43.3
Q ss_pred eCCeEE-EEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCCCcEEEEE-CCCcEEEEEcCCCeEEEE
Q psy4771 71 HKGDLY-MGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVAD-AYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 71 ~~g~ly-~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad-~~~gv~~vd~~~g~~~~l 147 (337)
.+|..+ ++-.+..|+-|.. +..+-+.+.. ...+...++.+.++++.+++- ....++.+|.++|+...-
T Consensus 57 P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk---------gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk 127 (338)
T KOG0265|consen 57 PDGSCFASGGSDRAIVLWNVYGDCENFWVLK---------GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK 127 (338)
T ss_pred CCCCeEeecCCcceEEEEeccccccceeeec---------cccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh
Confidence 366666 7777888888863 4433332221 122446789999999665554 345699999998875543
No 233
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.03 E-value=32 Score=33.72 Aligned_cols=35 Identities=20% Similarity=0.106 Sum_probs=19.5
Q ss_pred ceEEECCCCcEEEEEC--------------CCcEEEEEcCCCeEEEEecc
Q psy4771 115 LGIKFDKNGALHVADA--------------YFGLYKVNVTTGQTEQLISM 150 (337)
Q Consensus 115 ~Gl~~d~~G~lyVad~--------------~~gv~~vd~~~g~~~~l~~~ 150 (337)
+.+...++|++++... ...|+.+| .+|++....+.
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~ 241 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDF 241 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEG
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEeh
Confidence 5788889996665433 12488899 67777766553
No 234
>KOG1009|consensus
Probab=84.77 E-value=19 Score=33.96 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=34.9
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe-ccccceeeEEEccCCC
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADES 259 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~ 259 (337)
-+-+++..+|++..++.+.. ..++.+|...|+..... ++-.+++|+|++|-++
T Consensus 125 diydL~Ws~d~~~l~s~s~d--------------ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 125 DIYDLAWSPDSNFLVSGSVD--------------NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred chhhhhccCCCceeeeeecc--------------ceEEEEEeccceeEeeccccccccceeecchhhh
Confidence 35677777777655555432 25666666677665443 4567899999998774
No 235
>KOG0319|consensus
Probab=84.73 E-value=44 Score=34.06 Aligned_cols=150 Identities=10% Similarity=0.094 Sum_probs=83.7
Q ss_pred EEe--eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeE
Q psy4771 68 VVK--HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQT 144 (337)
Q Consensus 68 i~~--~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~ 144 (337)
+++ ++..||+...+ +|..++-........++++ .-...-..+++++|+...++-...+ +..++..+|++
T Consensus 25 ~~~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~~-------ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~ 96 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGD-RVIIIDVATGSIALPSGSN-------EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKL 96 (775)
T ss_pred eeECCCCCEEEEecCc-eEEEEEccCCceecccCCc-------cchhhhheeeecCCccEEEEeeccceEEEEEcccchH
Confidence 555 45567766544 4666654222221223322 2234456899999984444433333 55567666643
Q ss_pred EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCC-CccEEEcCCCcEEEEcCCCCccCceeeeee
Q psy4771 145 EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQI-PNSVTVDSDGMVYWSDSSTKYKSGLFEGLT 223 (337)
Q Consensus 145 ~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~-pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~ 223 (337)
..... .- +.. .--+++++.|.+.-+-
T Consensus 97 irswK----a~-----------------------------------He~Pvi~ma~~~~g~LlAtg-------------- 123 (775)
T KOG0319|consen 97 IRSWK----AI-----------------------------------HEAPVITMAFDPTGTLLATG-------------- 123 (775)
T ss_pred hHhHh----hc-----------------------------------cCCCeEEEEEcCCCceEEec--------------
Confidence 33221 00 111 2457788877554332
Q ss_pred cCCccEEEEcCCCCeeEEEeccccc-eeeEEEccCCCE-EEEEeCCCCEEEEEEeeC
Q psy4771 224 SGSGRLIQYNPKTKKNKVLIANLHF-ANGVELSADESF-VIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~~~~~~-p~gia~~~dg~~-lyva~~~~~~I~~~~~~g 278 (337)
...|++-++|-+.+..+.-..++.. ...+.|.|+-.+ +.++....+.|..+++..
T Consensus 124 gaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 124 GADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND 180 (775)
T ss_pred cccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEccc
Confidence 2345777777777777666666443 456777776543 456666678899998864
No 236
>KOG0299|consensus
Probab=84.70 E-value=38 Score=32.46 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=47.3
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec--cccceeeEEEccCCCEEEEEeCCCCE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA--NLHFANGVELSADESFVIVAETMSSR 270 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyva~~~~~~ 270 (337)
+.+++++-+.-++..+.+... .=+||.+...-.++..+.. -..+-|.++|+.+|++|+++-...+|
T Consensus 382 Witsla~i~~sdL~asGS~~G------------~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 382 WITSLAVIPGSDLLASGSWSG------------CVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHR 449 (479)
T ss_pred ceeeeEecccCceEEecCCCC------------ceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccc
Confidence 677788777666665554321 1267777654334433221 13467999999999999998777777
Q ss_pred EEEEEee
Q psy4771 271 VHRYYLK 277 (337)
Q Consensus 271 I~~~~~~ 277 (337)
+-|....
T Consensus 450 lGRW~~~ 456 (479)
T KOG0299|consen 450 LGRWWCL 456 (479)
T ss_pred cceeeEe
Confidence 7776653
No 237
>KOG2321|consensus
Probab=83.95 E-value=48 Score=32.94 Aligned_cols=68 Identities=10% Similarity=0.289 Sum_probs=36.0
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecccc-ce-eeEEEcc--CCCEEEEEeC
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLH-FA-NGVELSA--DESFVIVAET 266 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~-~p-~gia~~~--dg~~lyva~~ 266 (337)
...+..+.+..+|- ....+...|.++.||..+.+...+.+... .| .-+.+-+ +++.|+-+|.
T Consensus 228 ~~svTal~F~d~gL--------------~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk 293 (703)
T KOG2321|consen 228 APSVTALKFRDDGL--------------HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK 293 (703)
T ss_pred cCcceEEEecCCce--------------eEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecch
Confidence 44566777776652 11234456899999988776544444321 22 2233322 3445665553
Q ss_pred CCCEEEEEE
Q psy4771 267 MSSRVHRYY 275 (337)
Q Consensus 267 ~~~~I~~~~ 275 (337)
+|.++|
T Consensus 294 ---~~~kiW 299 (703)
T KOG2321|consen 294 ---RILKIW 299 (703)
T ss_pred ---HHhhhc
Confidence 444444
No 238
>KOG1407|consensus
Probab=83.76 E-value=32 Score=30.75 Aligned_cols=59 Identities=8% Similarity=0.035 Sum_probs=31.3
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcC
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVT 140 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~ 140 (337)
.+.+.+...+..|.+|+--..+....+-. -+.-.-+...|+| .+.+.+....|..+|..
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~----------~~eni~i~wsp~g~~~~~~~kdD~it~id~r 136 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTARIET----------KGENINITWSPDGEYIAVGNKDDRITFIDAR 136 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEEeec----------cCcceEEEEcCCCCEEEEecCcccEEEEEec
Confidence 34555777788888887522222211110 1112346777887 44444444557777754
No 239
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=83.47 E-value=12 Score=35.60 Aligned_cols=107 Identities=20% Similarity=0.170 Sum_probs=57.9
Q ss_pred CccEEEcCCCc-EEEE-cCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccce--eeEEEccCCCEEEEEeCCC-
Q psy4771 194 PNSVTVDSDGM-VYWS-DSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA--NGVELSADESFVIVAETMS- 268 (337)
Q Consensus 194 pn~v~vd~~G~-lyvt-d~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p--~gia~~~dg~~lyva~~~~- 268 (337)
..+..+++||+ +.++ +.+.. ..-.|+.+|.++|+. +.+.+..+ .++++.+|++.+|.+....
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~-----------e~~~l~v~Dl~tg~~--l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGS-----------EWYTLRVFDLETGKF--LPDGIENPKFSSVSWSDDGKGFFYTRFDED 192 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTS-----------SEEEEEEEETTTTEE--EEEEEEEEESEEEEECTTSSEEEEEECSTT
T ss_pred eeeeeECCCCCEEEEEecCCCC-----------ceEEEEEEECCCCcC--cCCcccccccceEEEeCCCCEEEEEEeCcc
Confidence 34677888887 3333 32211 112688999988864 33343333 3499999988887776443
Q ss_pred ---------CEEEEEEeeCCCCCceeeeecCCCCC-CCceeECCCCC-EEEEecCC
Q psy4771 269 ---------SRVHRYYLKGPKQGKSEVFIDGLPGL-PDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 269 ---------~~I~~~~~~g~~~~~~~~~~~~~~g~-Pdgi~~d~dG~-l~va~~~~ 313 (337)
++|++..+.........+|-+..+.+ --++..+.||+ +.+.....
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG 248 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS
T ss_pred cccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc
Confidence 34666665332111233443322222 23677889987 45555444
No 240
>KOG0639|consensus
Probab=83.04 E-value=13 Score=36.00 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=49.6
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE-EEeccccceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK-VLIANLHFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
....+++.+|-++-|+.-+ +|.|.++|..+..+. .+...-.....|.+++||..||-. .-.++|
T Consensus 511 aCyALa~spDakvcFsccs--------------dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTG-GlDntv 575 (705)
T KOG0639|consen 511 ACYALAISPDAKVCFSCCS--------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTG-GLDNTV 575 (705)
T ss_pred hhhhhhcCCccceeeeecc--------------CCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecC-CCccce
Confidence 3567888999888887765 568888888755432 223334567889999999877753 345788
Q ss_pred EEEEee
Q psy4771 272 HRYYLK 277 (337)
Q Consensus 272 ~~~~~~ 277 (337)
...|+.
T Consensus 576 RcWDlr 581 (705)
T KOG0639|consen 576 RCWDLR 581 (705)
T ss_pred eehhhh
Confidence 888875
No 241
>KOG2321|consensus
Probab=82.76 E-value=24 Score=34.93 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=81.1
Q ss_pred CCeEEEEecCcEEEEEeCCc---eeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcCCCeEEEE
Q psy4771 72 KGDLYMGVDGGHILKLSGGK---LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g~~~~l 147 (337)
.|+|-++..+|.+-.||+-. +..+ .................+..+.|+.+| ++-|..+...++.+|....+...+
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l-~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTL-DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred cceEEecccCceEEEecchhhhhheee-ecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence 55666888899888898721 1111 111110000001233457889998888 666665434488889876554444
Q ss_pred eccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCc
Q psy4771 148 ISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSG 227 (337)
Q Consensus 148 ~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G 227 (337)
.+. .+. + +......+.-+....++-+|..
T Consensus 266 kdh----~~e---~----------------------------pi~~l~~~~~~~q~~v~S~Dk~---------------- 294 (703)
T KOG2321|consen 266 KDH----GYE---L----------------------------PIKKLDWQDTDQQNKVVSMDKR---------------- 294 (703)
T ss_pred ccc----CCc---c----------------------------ceeeecccccCCCceEEecchH----------------
Confidence 431 110 0 1111111111222235544443
Q ss_pred cEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 228 RLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
.+-.+|..+|+.-.......--|.+|+-|+...++++.. +..+..|.+
T Consensus 295 ~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane-~~~m~~yyi 342 (703)
T KOG2321|consen 295 ILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE-SSKMHTYYI 342 (703)
T ss_pred HhhhcccccCCceeeccccCCcCceeeecCCceEEEecC-CCcceeEEc
Confidence 233355666766666666667899999998876666553 455666665
No 242
>KOG4649|consensus
Probab=82.69 E-value=36 Score=30.53 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=38.9
Q ss_pred eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECC-CCcEEEEECCCcEEEEEcCCCeEEEE
Q psy4771 71 HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDK-NGALHVADAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 71 ~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~-~G~lyVad~~~gv~~vd~~~g~~~~l 147 (337)
++|.+|++..|+..+.+|+.....+.+ ..|.| .. -.+-++++ +|.||+|-....+.+++++.+....+
T Consensus 104 ~~glIycgshd~~~yalD~~~~~cVyk--skcgG----~~---f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~ 172 (354)
T KOG4649|consen 104 DGGLIYCGSHDGNFYALDPKTYGCVYK--SKCGG----GT---FVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEF 172 (354)
T ss_pred CCceEEEecCCCcEEEecccccceEEe--cccCC----ce---eccceecCCCceEEEEeccceEEEEccCCCCccee
Confidence 467777777777777777633222221 22322 11 12334555 67899887655588888776644333
No 243
>PHA03098 kelch-like protein; Provisional
Probab=82.44 E-value=54 Score=32.45 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=36.5
Q ss_pred CCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecccccee-e-EEEccCCCEEEEEeCCC--------CE
Q psy4771 201 SDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFAN-G-VELSADESFVIVAETMS--------SR 270 (337)
Q Consensus 201 ~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~-g-ia~~~dg~~lyva~~~~--------~~ 270 (337)
-+|+||+....... ......+++||+.+++.+.+.. +..+. + .+..-++ .||+.-... +.
T Consensus 388 ~~~~iYv~GG~~~~--------~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~ 457 (534)
T PHA03098 388 VNNLIYVIGGISKN--------DELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIYHDG-KIYVIGGISYIDNIKVYNI 457 (534)
T ss_pred ECCEEEEECCcCCC--------CcccceEEEEeCCCCeeeecCC-CCccccCceEEEECC-EEEEECCccCCCCCcccce
Confidence 35789986542110 0112478999999887765432 22221 1 1222244 688875321 34
Q ss_pred EEEEEeeC
Q psy4771 271 VHRYYLKG 278 (337)
Q Consensus 271 I~~~~~~g 278 (337)
+++|++..
T Consensus 458 v~~yd~~~ 465 (534)
T PHA03098 458 VESYNPVT 465 (534)
T ss_pred EEEecCCC
Confidence 88888753
No 244
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=82.30 E-value=36 Score=30.36 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=22.1
Q ss_pred CcceEEECCC-CcEEEEECCCcEEEEEcC
Q psy4771 113 RPLGIKFDKN-GALHVADAYFGLYKVNVT 140 (337)
Q Consensus 113 ~P~Gl~~d~~-G~lyVad~~~gv~~vd~~ 140 (337)
.-.|+..|.+ |.||+++..-+||++..+
T Consensus 206 QTEG~VaDdEtG~LYIaeEdvaiWK~~Ae 234 (364)
T COG4247 206 QTEGMVADDETGFLYIAEEDVAIWKYEAE 234 (364)
T ss_pred cccceeeccccceEEEeeccceeeecccC
Confidence 3568888776 899999877789998654
No 245
>KOG1963|consensus
Probab=81.76 E-value=55 Score=33.81 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=19.1
Q ss_pred CCcceEEECCCCcEEEEECCCc-EEEEEcCCCe
Q psy4771 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQ 143 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~ 143 (337)
...+++.|..+|....+-...+ +.+...++++
T Consensus 252 ~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred cccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 3467899999984444433334 4445555665
No 246
>KOG0306|consensus
Probab=81.58 E-value=67 Score=32.98 Aligned_cols=191 Identities=17% Similarity=0.171 Sum_probs=94.1
Q ss_pred CccEEEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCC
Q psy4771 64 GPEAVVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTT 141 (337)
Q Consensus 64 ~P~~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~ 141 (337)
.-.++.+ .+..+..+-+++.|.-|+....+.+.+++ |+.-.+-.|-|.++.+|.-..+| +..+|...
T Consensus 375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~-----------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT-----------CGYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred heeEEEeecCceeeeecCCCcEEEEEccCcceeEEec-----------cccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 4456666 44445556666778778766555555442 34566777777766666655566 66666554
Q ss_pred CeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCc-cCceee
Q psy4771 142 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY-KSGLFE 220 (337)
Q Consensus 142 g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~-~~~~~~ 220 (337)
........ ..+ ...-.++..||+.=++|-+..+. .-|-..
T Consensus 444 ~~l~Eti~---AHd------------------------------------gaIWsi~~~pD~~g~vT~saDktVkfWdf~ 484 (888)
T KOG0306|consen 444 ASLVETIR---AHD------------------------------------GAIWSISLSPDNKGFVTGSADKTVKFWDFK 484 (888)
T ss_pred hhhhhhhh---ccc------------------------------------cceeeeeecCCCCceEEecCCcEEEEEeEE
Confidence 33221111 011 12345666666665555443221 000011
Q ss_pred eeecCCc---cEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCc
Q psy4771 221 GLTSGSG---RLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDN 297 (337)
Q Consensus 221 ~~~~~~G---~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdg 297 (337)
...+-.| +++.+-- .+ ..+--.-.-.+.+||||++|-|+- -.++|.+|.++.-+. -...+...+|- -.
T Consensus 485 l~~~~~gt~~k~lsl~~----~r-tLel~ddvL~v~~Spdgk~LaVsL-LdnTVkVyflDtlKF-flsLYGHkLPV--~s 555 (888)
T KOG0306|consen 485 LVVSVPGTQKKVLSLKH----TR-TLELEDDVLCVSVSPDGKLLAVSL-LDNTVKVYFLDTLKF-FLSLYGHKLPV--LS 555 (888)
T ss_pred EEeccCcccceeeeecc----ce-EEeccccEEEEEEcCCCcEEEEEe-ccCeEEEEEecceee-eeeecccccce--eE
Confidence 1111111 1111110 00 111112345788999998666655 468999999875321 01111112332 34
Q ss_pred eeECCCCCEEEEecCC
Q psy4771 298 VKRDSKGNFLVSLVCP 313 (337)
Q Consensus 298 i~~d~dG~l~va~~~~ 313 (337)
|-+.+|+++.|+..+.
T Consensus 556 mDIS~DSklivTgSAD 571 (888)
T KOG0306|consen 556 MDISPDSKLIVTGSAD 571 (888)
T ss_pred EeccCCcCeEEeccCC
Confidence 5556667766666544
No 247
>KOG0281|consensus
Probab=81.49 E-value=13 Score=34.41 Aligned_cols=49 Identities=6% Similarity=0.106 Sum_probs=32.1
Q ss_pred cEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 228 RLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
.|-.++..+++......+ .-.|||-..=...+.|+-+..++|.-+++..
T Consensus 341 TikvW~~st~efvRtl~g--HkRGIAClQYr~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred eEEEEeccceeeehhhhc--ccccceehhccCeEEEecCCCceEEEEeccc
Confidence 555566556654333322 3467776644447999999999999888863
No 248
>KOG1009|consensus
Probab=81.29 E-value=50 Score=31.27 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=37.6
Q ss_pred CCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc
Q psy4771 112 GRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG 174 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~ 174 (337)
..+..++..++++..++.+. +.++.+|...|++...... ... ++++++-|+-++.+
T Consensus 124 ~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d---h~~----yvqgvawDpl~qyv 180 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD---HEH----YVQGVAWDPLNQYV 180 (434)
T ss_pred cchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc---ccc----ccceeecchhhhhh
Confidence 44778999999877666544 4588888877877666542 111 46777777777766
No 249
>KOG0310|consensus
Probab=80.42 E-value=58 Score=31.48 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=75.9
Q ss_pred CC-eEEEEecCcEEEEEeCCce-eEEEecCccccCccccCccCC-cceEEECCCCcEEEEECCCcEEEEEcCCC-eEEEE
Q psy4771 72 KG-DLYMGVDGGHILKLSGGKL-VPVVKLGKDCYGFKYEQQCGR-PLGIKFDKNGALHVADAYFGLYKVNVTTG-QTEQL 147 (337)
Q Consensus 72 ~g-~ly~d~~~g~I~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~-P~Gl~~d~~G~lyVad~~~gv~~vd~~~g-~~~~l 147 (337)
++ .+.++..+|.|--||.-.. ..+..+. ++. -..+.+-+.|.++++-.++.+..+|.-+| +....
T Consensus 165 ~~hivvtGsYDg~vrl~DtR~~~~~v~eln-----------hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 165 NDHIVVTGSYDGKVRLWDTRSLTSRVVELN-----------HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred CCeEEEecCCCceEEEEEeccCCceeEEec-----------CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh
Confidence 44 4559999998888886221 2333331 223 34678889998998876677888887633 32111
Q ss_pred eccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCC
Q psy4771 148 ISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGS 226 (337)
Q Consensus 148 ~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~ 226 (337)
.. . -......+.+..++. |+ + ..-+
T Consensus 234 ~~---~------------------------------------H~KtVTcL~l~s~~~rLl-S--------------~sLD 259 (487)
T KOG0310|consen 234 MF---N------------------------------------HNKTVTCLRLASDSTRLL-S--------------GSLD 259 (487)
T ss_pred hh---c------------------------------------ccceEEEEEeecCCceEe-e--------------cccc
Confidence 10 0 122356777766664 33 2 2234
Q ss_pred ccEEEEcCCCCeeEEEecccccee---eEEEccCCCEEEEEeCC
Q psy4771 227 GRLIQYNPKTKKNKVLIANLHFAN---GVELSADESFVIVAETM 267 (337)
Q Consensus 227 G~v~~~d~~~~~~~~~~~~~~~p~---gia~~~dg~~lyva~~~ 267 (337)
|.|-.||..+-+ +...+.+|. .|+++||++++++.-++
T Consensus 260 ~~VKVfd~t~~K---vv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 260 RHVKVFDTTNYK---VVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred cceEEEEccceE---EEEeeecccceeeEEecCCCceEEEeccc
Confidence 566667643333 344555665 57999999888876654
No 250
>KOG0646|consensus
Probab=80.33 E-value=55 Score=31.51 Aligned_cols=142 Identities=11% Similarity=0.093 Sum_probs=76.6
Q ss_pred cceEEECCCCcEEEEECCC-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCC
Q psy4771 114 PLGIKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQ 192 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~ 192 (337)
-..++-++.|...++..-. .|+.....+|....+... -..
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a---------------------------------------HYQ 124 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA---------------------------------------HYQ 124 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHh---------------------------------------hcc
Confidence 4688999999888886344 477777777764433320 134
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCC-------CCee---EEEeccccceeeEEEccCC--CE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK-------TKKN---KVLIANLHFANGVELSADE--SF 260 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~-------~~~~---~~~~~~~~~p~gia~~~dg--~~ 260 (337)
....+.+..||..+||... +|.|+.+..- ++.+ ..+.++--.-..+.++..| .+
T Consensus 125 ~ITcL~fs~dgs~iiTgsk--------------Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~r 190 (476)
T KOG0646|consen 125 SITCLKFSDDGSHIITGSK--------------DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNAR 190 (476)
T ss_pred ceeEEEEeCCCcEEEecCC--------------CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccce
Confidence 4677888888888877765 2333333210 0000 0011111111233333321 13
Q ss_pred EEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC-EEEEecCC
Q psy4771 261 VIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 261 lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
||-+ +..+++..+++..+.+-..- ..|--+..+++|+.++ +|++...+
T Consensus 191 l~Ta-S~D~t~k~wdlS~g~LLlti----~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 191 LYTA-SEDRTIKLWDLSLGVLLLTI----TFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred EEEe-cCCceEEEEEeccceeeEEE----ecCCcceeEEEcccccEEEecCCcc
Confidence 4433 34567888888654221111 1344578899998776 88887666
No 251
>KOG1273|consensus
Probab=80.23 E-value=48 Score=30.46 Aligned_cols=182 Identities=13% Similarity=0.104 Sum_probs=88.9
Q ss_pred cEEEe-eCC-eEEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEEC-CCcEEEEEc
Q psy4771 66 EAVVK-HKG-DLYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADA-YFGLYKVNV 139 (337)
Q Consensus 66 ~~i~~-~~g-~ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~-~~gv~~vd~ 139 (337)
.+++. .+| .|.++..+..|..||- |....-..|.. --.+..+.|.. +..|+.- ...-+.++.
T Consensus 69 ~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~s------------pv~~~q~hp~k~n~~va~~~~~sp~vi~~ 136 (405)
T KOG1273|consen 69 TSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDS------------PVWGAQWHPRKRNKCVATIMEESPVVIDF 136 (405)
T ss_pred eEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccC------------ccceeeeccccCCeEEEEEecCCcEEEEe
Confidence 34555 444 4558888888888885 43222112211 12355555543 5555532 223233333
Q ss_pred CCCeEEEEeccccccCCCCCCCCCceeeCCCCCcc----cccceeeeccccCC-------CCCCCCccEEEcCCCcEEEE
Q psy4771 140 TTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG----QTEQLISMDTEIDG-------AKPQIPNSVTVDSDGMVYWS 208 (337)
Q Consensus 140 ~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~----~~~~v~~~~~~~~~-------~~~~~pn~v~vd~~G~lyvt 208 (337)
..++.+.+.. ..+|..+..+....+|+.|+++ +.+-+..+..+... ......-.+.+...|+.++.
T Consensus 137 s~~~h~~Lp~---d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~lii 213 (405)
T KOG1273|consen 137 SDPKHSVLPK---DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLII 213 (405)
T ss_pred cCCceeeccC---CCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEE
Confidence 3344444443 2345444556666777777776 22444444322110 01133445666666665555
Q ss_pred cCCCCccCceeeeeecCCccEEEEcCC-------CCeeEEEe------ccccceeeEEEccCCCEEEEEeCCCCEEEEEE
Q psy4771 209 DSSTKYKSGLFEGLTSGSGRLIQYNPK-------TKKNKVLI------ANLHFANGVELSADESFVIVAETMSSRVHRYY 275 (337)
Q Consensus 209 d~~~~~~~~~~~~~~~~~G~v~~~d~~-------~~~~~~~~------~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~ 275 (337)
+.+.+ .|..|+.. +++++... ..+ .=+.++++.||.++..+.+..+.++...
T Consensus 214 NtsDR--------------vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~-~Wk~ccfs~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 214 NTSDR--------------VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL-QWKKCCFSGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred ecCCc--------------eEEEEehhhhcccCccCCcChhHHHHHHHhhh-hhhheeecCCccEEEeccccceeEEEEe
Confidence 54422 11122211 12221110 011 1257889999976666666677777766
Q ss_pred ee
Q psy4771 276 LK 277 (337)
Q Consensus 276 ~~ 277 (337)
-.
T Consensus 279 ~~ 280 (405)
T KOG1273|consen 279 KS 280 (405)
T ss_pred cC
Confidence 43
No 252
>KOG0643|consensus
Probab=80.21 E-value=44 Score=30.00 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=29.6
Q ss_pred ecCCccEEEEcCCCCeeEEEe--ccccceeeEEEccCCCEEEEEeCCC
Q psy4771 223 TSGSGRLIQYNPKTKKNKVLI--ANLHFANGVELSADESFVIVAETMS 268 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~~~~--~~~~~p~gia~~~dg~~lyva~~~~ 268 (337)
...+|.|-+||..+|+..+-. ..-..-|.|++++|. +.+++.+..
T Consensus 165 Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~D 211 (327)
T KOG0643|consen 165 GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKD 211 (327)
T ss_pred ecCCCcEEEEEcccCceeeechhhhccccccccccCCc-ceEEecccC
Confidence 345689999999887543222 123456889999998 466666544
No 253
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=80.08 E-value=15 Score=38.16 Aligned_cols=27 Identities=7% Similarity=-0.039 Sum_probs=19.0
Q ss_pred ceEEECCCCcEEEEECCCcEEEEEcCC
Q psy4771 115 LGIKFDKNGALHVADAYFGLYKVNVTT 141 (337)
Q Consensus 115 ~Gl~~d~~G~lyVad~~~gv~~vd~~~ 141 (337)
.+++.+.+|+|.|+.....|+.+|.-+
T Consensus 581 s~~aTt~~G~iavgs~~G~IRLyd~~g 607 (794)
T PF08553_consen 581 SCFATTEDGYIAVGSNKGDIRLYDRLG 607 (794)
T ss_pred eEEEecCCceEEEEeCCCcEEeecccc
Confidence 467888888888886544477777544
No 254
>PHA03098 kelch-like protein; Provisional
Probab=80.03 E-value=65 Score=31.86 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=35.3
Q ss_pred CCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecccccee---eEEEccCCCEEEEEeCC-----CCEEE
Q psy4771 201 SDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFAN---GVELSADESFVIVAETM-----SSRVH 272 (337)
Q Consensus 201 ~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~---gia~~~dg~~lyva~~~-----~~~I~ 272 (337)
-++.||+....... +. ......+++||+.+++...+. .+..|. +++.- ++ .|||.-.. .+.|.
T Consensus 436 ~~~~iyv~GG~~~~-~~-----~~~~~~v~~yd~~~~~W~~~~-~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~ 506 (534)
T PHA03098 436 HDGKIYVIGGISYI-DN-----IKVYNIVESYNPVTNKWTELS-SLNFPRINASLCIF-NN-KIYVVGGDKYEYYINEIE 506 (534)
T ss_pred ECCEEEEECCccCC-CC-----CcccceEEEecCCCCceeeCC-CCCcccccceEEEE-CC-EEEEEcCCcCCcccceeE
Confidence 35688887643210 00 001124999999988876543 222221 22222 44 58776533 24667
Q ss_pred EEEee
Q psy4771 273 RYYLK 277 (337)
Q Consensus 273 ~~~~~ 277 (337)
+|+++
T Consensus 507 ~yd~~ 511 (534)
T PHA03098 507 VYDDK 511 (534)
T ss_pred EEeCC
Confidence 77654
No 255
>KOG2919|consensus
Probab=79.60 E-value=23 Score=32.60 Aligned_cols=104 Identities=12% Similarity=0.136 Sum_probs=55.9
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcC-CCCe-eE---EEecc----ccceeeEEEccCCCE
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNP-KTKK-NK---VLIAN----LHFANGVELSADESF 260 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~-~~~~-~~---~~~~~----~~~p~gia~~~dg~~ 260 (337)
......+++.+||. ||....+ .|.+||. ..|. .. ++..+ ...-..++++|-...
T Consensus 158 ~taAhsL~Fs~DGeqlfaGykr----------------cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~ 221 (406)
T KOG2919|consen 158 YTAAHSLQFSPDGEQLFAGYKR----------------CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSK 221 (406)
T ss_pred hhhheeEEecCCCCeEeecccc----------------eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCc
Confidence 45678999999997 6644433 2333332 1111 10 11111 123456788887776
Q ss_pred EEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC-EEEEecCC
Q psy4771 261 VIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 261 lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
.+..-+..+++-.|.-++... ..++.. -.|-..-++..++|+ +|++....
T Consensus 222 ~~a~gsY~q~~giy~~~~~~p--l~llgg-h~gGvThL~~~edGn~lfsGaRk~ 272 (406)
T KOG2919|consen 222 TLAVGSYGQRVGIYNDDGRRP--LQLLGG-HGGGVTHLQWCEDGNKLFSGARKD 272 (406)
T ss_pred ceeeecccceeeeEecCCCCc--eeeecc-cCCCeeeEEeccCcCeecccccCC
Confidence 777776667766666544321 112222 222245566788886 77776554
No 256
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=79.54 E-value=66 Score=31.59 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=23.9
Q ss_pred ceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 248 FANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 248 ~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
..|+|..++.++.|+++....+.|++++..
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~ 301 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYR 301 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-T
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECC
Confidence 468999998667899999999999999954
No 257
>KOG3914|consensus
Probab=79.29 E-value=29 Score=32.56 Aligned_cols=73 Identities=11% Similarity=0.183 Sum_probs=43.4
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE-EEeccccceeeEEEccCCCEEEEEeCCCC
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK-VLIANLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
+....+|++.+|+...+|..... .=+|.+|.. +..++ ....+-.|-..|++.++. +..+..+.+
T Consensus 151 vSml~dVavS~D~~~IitaDRDE------------kIRvs~ypa-~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~ 215 (390)
T KOG3914|consen 151 VSMLLDVAVSPDDQFIITADRDE------------KIRVSRYPA-TFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDK 215 (390)
T ss_pred hhhhheeeecCCCCEEEEecCCc------------eEEEEecCc-ccchhhhccccHhheeeeeeccCc--eeeecCCCC
Confidence 45678999999987444433211 014444432 11111 122334577888888654 677888888
Q ss_pred EEEEEEeeC
Q psy4771 270 RVHRYYLKG 278 (337)
Q Consensus 270 ~I~~~~~~g 278 (337)
.|+..++..
T Consensus 216 tlr~Wd~~s 224 (390)
T KOG3914|consen 216 TLRLWDITS 224 (390)
T ss_pred cEEEEeccc
Confidence 888888853
No 258
>PF15284 PAGK: Phage-encoded virulence factor
Probab=79.04 E-value=2.3 Score=28.55 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=17.5
Q ss_pred ChhhHHHHHHHHHHHHHHHhcC
Q psy4771 1 MAFFRNFFISVVVGIVAITFYP 22 (337)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (337)
||++|+.++.+++++.+++|-.
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSa 22 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSA 22 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhH
Confidence 8999998888877777776555
No 259
>KOG1408|consensus
Probab=78.43 E-value=20 Score=36.53 Aligned_cols=111 Identities=10% Similarity=0.081 Sum_probs=60.1
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCE-E
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSR-V 271 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~-I 271 (337)
....+|+.++|+..+|..... .+.-+||.+... +.+..+.+.-..-..+||+|.+++|.-.-+-..- |
T Consensus 80 ~~t~vAfS~~GryvatGEcG~----------~pa~kVw~la~h-~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIV 148 (1080)
T KOG1408|consen 80 PLTCVAFSQNGRYVATGECGR----------TPASKVWSLAFH-GVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIV 148 (1080)
T ss_pred ceeEEEEcCCCcEEEecccCC----------Cccceeeeeccc-cchhhhhhccccceeeeecCCCcEEEeeccccceEE
Confidence 357899999998666554311 122355555433 3344455555677899999999755522222222 2
Q ss_pred EEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCCCCCch
Q psy4771 272 HRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCPVEQPS 318 (337)
Q Consensus 272 ~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~~~~p~ 318 (337)
.+++..-...+.... ......-+++.+||.++|+....|..-|
T Consensus 149 nv~dWr~N~~~asnk----iss~Vsav~fsEdgSYfvT~gnrHvk~w 191 (1080)
T KOG1408|consen 149 NVNDWRVNSSGASNK----ISSVVSAVAFSEDGSYFVTSGNRHVKLW 191 (1080)
T ss_pred Ehhhhhhcccccccc----cceeEEEEEEccCCceeeeeeeeeEEEE
Confidence 223221110111111 1112356789999999998877744433
No 260
>KOG0264|consensus
Probab=78.05 E-value=65 Score=30.72 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=48.0
Q ss_pred CCccEEEcCCC-cEEEEcCCCCccCceeeeeecCCccEEEEcCCCCee--EEEeccccceeeEEEccCCCEEEEEeCCCC
Q psy4771 193 IPNSVTVDSDG-MVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN--KVLIANLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 193 ~pn~v~vd~~G-~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~--~~~~~~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
-.|.+++.+-+ .|..|-+. +++|..+|+.+-.. -.+-..-..-..|.++|+...++.+....+
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~--------------D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~ 339 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSA--------------DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDR 339 (422)
T ss_pred ceeEEEeCCCCCceEEeccC--------------CCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCC
Confidence 36888888844 45544433 45788888764321 111112234467999999999999999999
Q ss_pred EEEEEEee
Q psy4771 270 RVHRYYLK 277 (337)
Q Consensus 270 ~I~~~~~~ 277 (337)
|+.+.|++
T Consensus 340 rl~vWDls 347 (422)
T KOG0264|consen 340 RLNVWDLS 347 (422)
T ss_pred cEEEEecc
Confidence 99999986
No 261
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=77.79 E-value=67 Score=30.74 Aligned_cols=19 Identities=11% Similarity=0.115 Sum_probs=14.0
Q ss_pred CCccEEEcCCCcEEEEcCC
Q psy4771 193 IPNSVTVDSDGMVYWSDSS 211 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~ 211 (337)
...++++.++|.+|++...
T Consensus 282 ~l~~v~~~~dg~l~l~g~~ 300 (398)
T PLN00033 282 RIQNMGWRADGGLWLLTRG 300 (398)
T ss_pred ceeeeeEcCCCCEEEEeCC
Confidence 4577888888888876643
No 262
>KOG1538|consensus
Probab=76.92 E-value=9.1 Score=38.46 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=44.3
Q ss_pred CCCCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCee-EEEeccccceeeEEEccCCCEEEEEeCCC
Q psy4771 191 PQIPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN-KVLIANLHFANGVELSADESFVIVAETMS 268 (337)
Q Consensus 191 ~~~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~-~~~~~~~~~p~gia~~~dg~~lyva~~~~ 268 (337)
....+++++.|||. +.++-.+ +++.||+..|.. ..+...-...+.+|++.||+ .+.+-...
T Consensus 12 ~hci~d~afkPDGsqL~lAAg~----------------rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG~aD 74 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILAAGS----------------RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASGSAD 74 (1081)
T ss_pred ccchheeEECCCCceEEEecCC----------------EEEEEeCCCcccccccccccceEEEEEEccCCc-eeccCCCc
Confidence 34689999999997 5444332 899999987754 33444455678999999996 55554443
Q ss_pred CEEEE
Q psy4771 269 SRVHR 273 (337)
Q Consensus 269 ~~I~~ 273 (337)
..|..
T Consensus 75 K~VI~ 79 (1081)
T KOG1538|consen 75 KSVII 79 (1081)
T ss_pred eeEEE
Confidence 33333
No 263
>KOG0296|consensus
Probab=76.84 E-value=65 Score=30.10 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=33.3
Q ss_pred cCCccEEEEcCCCCeeEEEecccc-ceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 224 SGSGRLIQYNPKTKKNKVLIANLH-FANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~~~~~-~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
..+|.+|.+....+....+..+-. ..+.=.|.|||+++..... .+.|.++++..
T Consensus 167 ~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-dgti~~Wn~kt 221 (399)
T KOG0296|consen 167 STDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-DGTIIVWNPKT 221 (399)
T ss_pred cCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-CceEEEEecCC
Confidence 346777777765533333443422 2334468899987776654 67888888763
No 264
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=76.22 E-value=63 Score=29.64 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=27.9
Q ss_pred ceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 248 FANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 248 ~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
.-+++..++||+.+.|+. .+.+++-.-.|... -+.+.-...-....|.++++|.+|.....+
T Consensus 146 s~~~~~r~~dG~~vavs~--~G~~~~s~~~G~~~--w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg 207 (302)
T PF14870_consen 146 SINDITRSSDGRYVAVSS--RGNFYSSWDPGQTT--WQPHNRNSSRRIQSMGFSPDGNLWMLARGG 207 (302)
T ss_dssp -EEEEEE-TTS-EEEEET--TSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-TTS-EEEEETTT
T ss_pred eeEeEEECCCCcEEEEEC--cccEEEEecCCCcc--ceEEccCccceehhceecCCCCEEEEeCCc
Confidence 345667778887566655 34554433222211 111111111234677788888888877555
No 265
>KOG0771|consensus
Probab=76.00 E-value=72 Score=30.18 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=44.9
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec--cccceeeEEEccCCCEEEEEeCC
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA--NLHFANGVELSADESFVIVAETM 267 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyva~~~ 267 (337)
.++....++|+.+|++... ...+|.|..|+..+-+...... ++.+-.+++|+||-+.+ .+-+.
T Consensus 280 ~~~siSsl~VS~dGkf~Al--------------GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~-~svSs 344 (398)
T KOG0771|consen 280 RFKSISSLAVSDDGKFLAL--------------GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYL-ASVSS 344 (398)
T ss_pred ccCcceeEEEcCCCcEEEE--------------eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcc-ccccc
Confidence 3566789999999985422 2335677777765444433322 24467899999997533 33444
Q ss_pred CCEEEEEEee
Q psy4771 268 SSRVHRYYLK 277 (337)
Q Consensus 268 ~~~I~~~~~~ 277 (337)
.++..++.+.
T Consensus 345 ~~~~~v~~l~ 354 (398)
T KOG0771|consen 345 DNEAAVTKLA 354 (398)
T ss_pred CCceeEEEEe
Confidence 5555555554
No 266
>KOG0281|consensus
Probab=75.92 E-value=25 Score=32.64 Aligned_cols=169 Identities=16% Similarity=0.163 Sum_probs=88.4
Q ss_pred EeeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCC-cEEEEEcCCCe-EEE
Q psy4771 69 VKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYF-GLYKVNVTTGQ-TEQ 146 (337)
Q Consensus 69 ~~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~-~~~ 146 (337)
..+++.+.++..++.|-.||........++ .+.-+....+.+|. +++|+.+.. .|...|.++|+ +.+
T Consensus 204 QYDD~kiVSGlrDnTikiWD~n~~~c~~~L---------~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 204 QYDDEKIVSGLRDNTIKIWDKNSLECLKIL---------TGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred EecchhhhcccccCceEEeccccHHHHHhh---------hcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhH
Confidence 335667777888888888876543222111 12234555666654 588886544 37777877765 233
Q ss_pred EeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCC
Q psy4771 147 LISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGS 226 (337)
Q Consensus 147 l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~ 226 (337)
+.. ..+ ..-++.+.. .+.+|.+... +
T Consensus 273 lih---Hce-------------------------------------aVLhlrf~n--g~mvtcSkDr------------s 298 (499)
T KOG0281|consen 273 LIH---HCE-------------------------------------AVLHLRFSN--GYMVTCSKDR------------S 298 (499)
T ss_pred Hhh---hcc-------------------------------------eeEEEEEeC--CEEEEecCCc------------e
Confidence 332 111 122333331 2444444322 1
Q ss_pred ccEEEEcCCCCe--eEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECC-C
Q psy4771 227 GRLIQYNPKTKK--NKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS-K 303 (337)
Q Consensus 227 G~v~~~d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~-d 303 (337)
-+||..+..+-. .+++.......|-+.++ .+ +.|+.++..+|.+.+.+.. .|+-.+.|.-.|||.-. .
T Consensus 299 iaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~k-yIVsASgDRTikvW~~st~------efvRtl~gHkRGIAClQYr 369 (499)
T KOG0281|consen 299 IAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DK-YIVSASGDRTIKVWSTSTC------EFVRTLNGHKRGIACLQYR 369 (499)
T ss_pred eEEEeccCchHHHHHHHHhhhhhheeeeccc--cc-eEEEecCCceEEEEeccce------eeehhhhcccccceehhcc
Confidence 255555433211 12334455666777775 33 7788888888888876532 23333555566776443 4
Q ss_pred CCEEEEec
Q psy4771 304 GNFLVSLV 311 (337)
Q Consensus 304 G~l~va~~ 311 (337)
|++-|+-.
T Consensus 370 ~rlvVSGS 377 (499)
T KOG0281|consen 370 DRLVVSGS 377 (499)
T ss_pred CeEEEecC
Confidence 55555543
No 267
>KOG2315|consensus
Probab=75.90 E-value=86 Score=30.98 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=43.1
Q ss_pred CccEEEcCCCcEE-EEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecccc--ceeeEEEccCCCEEEEEeCC---
Q psy4771 194 PNSVTVDSDGMVY-WSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLH--FANGVELSADESFVIVAETM--- 267 (337)
Q Consensus 194 pn~v~vd~~G~ly-vtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~--~p~gia~~~dg~~lyva~~~--- 267 (337)
-|.+-+.+.|++. ++-. .+..|.+-.+|..+.+ .+..+. ...=..|+|||++++.+.+.
T Consensus 314 RN~~~fnp~g~ii~lAGF------------GNL~G~mEvwDv~n~K---~i~~~~a~~tt~~eW~PdGe~flTATTaPRl 378 (566)
T KOG2315|consen 314 RNTAFFNPHGNIILLAGF------------GNLPGDMEVWDVPNRK---LIAKFKAANTTVFEWSPDGEYFLTATTAPRL 378 (566)
T ss_pred ccceEECCCCCEEEEeec------------CCCCCceEEEeccchh---hccccccCCceEEEEcCCCcEEEEEeccccE
Confidence 3666667777633 3332 2345777777765432 222233 33446888999999988876
Q ss_pred --CCEEEEEEeeCC
Q psy4771 268 --SSRVHRYYLKGP 279 (337)
Q Consensus 268 --~~~I~~~~~~g~ 279 (337)
.|.+..++.+|.
T Consensus 379 rvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 379 RVDNGIKIWHYTGS 392 (566)
T ss_pred EecCCeEEEEecCc
Confidence 356666777775
No 268
>KOG0316|consensus
Probab=75.47 E-value=57 Score=28.78 Aligned_cols=170 Identities=11% Similarity=0.101 Sum_probs=91.9
Q ss_pred eCCeEEEEecCcEEEE-EeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEEe
Q psy4771 71 HKGDLYMGVDGGHILK-LSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQLI 148 (337)
Q Consensus 71 ~~g~ly~d~~~g~I~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l~ 148 (337)
.+|..-....+.|.+| |++-+...+.++. .........+...|..=+-+-.+ ..+..+|.++|++.+-.
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYs---------ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYS---------GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeec---------CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec
Confidence 3566555556666666 4553333333332 11222445555555423322222 34888898888876654
Q ss_pred ccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCcc
Q psy4771 149 SMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGR 228 (337)
Q Consensus 149 ~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~ 228 (337)
+. -....|.+.+..+-.+.++-+... .
T Consensus 98 rg---------------------------------------H~aqVNtV~fNeesSVv~SgsfD~--------------s 124 (307)
T KOG0316|consen 98 RG---------------------------------------HLAQVNTVRFNEESSVVASGSFDS--------------S 124 (307)
T ss_pred cc---------------------------------------ccceeeEEEecCcceEEEeccccc--------------e
Confidence 31 133468888888777766655421 4
Q ss_pred EEEEcCCCCeeEEE---eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC
Q psy4771 229 LIQYNPKTKKNKVL---IANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305 (337)
Q Consensus 229 v~~~d~~~~~~~~~---~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~ 305 (337)
+..+|......+.+ .+....-..|-++ ++..|+-+..+++.+|++..++ .+.+.+..-...+.+.+||+
T Consensus 125 ~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~-----l~sDy~g~pit~vs~s~d~n 196 (307)
T KOG0316|consen 125 VRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGT-----LSSDYFGHPITSVSFSKDGN 196 (307)
T ss_pred eEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecce-----eehhhcCCcceeEEecCCCC
Confidence 44455444433222 2222333445553 2688888889999999986332 22232211136788999998
Q ss_pred EEEEe
Q psy4771 306 FLVSL 310 (337)
Q Consensus 306 l~va~ 310 (337)
+-.+.
T Consensus 197 c~La~ 201 (307)
T KOG0316|consen 197 CSLAS 201 (307)
T ss_pred EEEEe
Confidence 44443
No 269
>KOG0273|consensus
Probab=74.46 E-value=87 Score=30.35 Aligned_cols=67 Identities=18% Similarity=0.002 Sum_probs=40.8
Q ss_pred ccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEE
Q psy4771 195 NSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRY 274 (337)
Q Consensus 195 n~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~ 274 (337)
.++++.++|+...+ ...+|.|...+.+++++-.-..+-..-+.++++.+|+.|-++.. .+.+.++
T Consensus 456 ysvafS~~g~ylAs--------------Gs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~s-d~~vcvl 520 (524)
T KOG0273|consen 456 YSVAFSPNGRYLAS--------------GSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACAS-DGSVCVL 520 (524)
T ss_pred EEEEecCCCcEEEe--------------cCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEec-CCCceEE
Confidence 56666666653333 23356777777776665444444445677899999976666554 3455555
Q ss_pred Ee
Q psy4771 275 YL 276 (337)
Q Consensus 275 ~~ 276 (337)
++
T Consensus 521 dl 522 (524)
T KOG0273|consen 521 DL 522 (524)
T ss_pred Ee
Confidence 43
No 270
>PRK13616 lipoprotein LpqB; Provisional
Probab=74.28 E-value=1e+02 Score=31.18 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=41.5
Q ss_pred CCccEEEcCCCc-EEEEcCCCCccCceee--eeecCCccEEEEcCCCCeeEEEeccccc-eeeEEEccCCCEEEEEeC-C
Q psy4771 193 IPNSVTVDSDGM-VYWSDSSTKYKSGLFE--GLTSGSGRLIQYNPKTKKNKVLIANLHF-ANGVELSADESFVIVAET-M 267 (337)
Q Consensus 193 ~pn~v~vd~~G~-lyvtd~~~~~~~~~~~--~~~~~~G~v~~~d~~~~~~~~~~~~~~~-p~gia~~~dg~~lyva~~-~ 267 (337)
.+..+.+++||. |.|.-.+ .++. +.....|. .++ .....+...+.. +..++|..+++ |+|... .
T Consensus 449 ~Issl~wSpDG~RiA~i~~g-----~v~Va~Vvr~~~G~-~~l----~~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~ 517 (591)
T PRK13616 449 PISELQLSRDGVRAAMIIGG-----KVYLAVVEQTEDGQ-YAL----TNPREVGPGLGDTAVSLDWRTGDS-LVVGRSDP 517 (591)
T ss_pred CcCeEEECCCCCEEEEEECC-----EEEEEEEEeCCCCc-eee----cccEEeecccCCccccceEecCCE-EEEEecCC
Confidence 478889999986 5543321 1111 11112221 221 111223444444 57888998886 656544 3
Q ss_pred CCEEEEEEeeCCC
Q psy4771 268 SSRVHRYYLKGPK 280 (337)
Q Consensus 268 ~~~I~~~~~~g~~ 280 (337)
...++++.++|..
T Consensus 518 ~~~v~~v~vDG~~ 530 (591)
T PRK13616 518 EHPVWYVNLDGSN 530 (591)
T ss_pred CCceEEEecCCcc
Confidence 4669999998753
No 271
>KOG0918|consensus
Probab=74.12 E-value=17 Score=34.31 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=17.7
Q ss_pred ceeeEEEccCCCEEEEEeCC
Q psy4771 248 FANGVELSADESFVIVAETM 267 (337)
Q Consensus 248 ~p~gia~~~dg~~lyva~~~ 267 (337)
.|.-+.+|-||++|||+++-
T Consensus 390 GPQMlQLSLDGKRLYVt~SL 409 (476)
T KOG0918|consen 390 GPQMLQLSLDGKRLYVTNSL 409 (476)
T ss_pred CceeEEeccCCcEEEEEchh
Confidence 58889999999999999853
No 272
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=73.81 E-value=46 Score=30.49 Aligned_cols=39 Identities=28% Similarity=0.208 Sum_probs=27.9
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEe
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI 243 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~ 243 (337)
.-+.|+|..+++|++.++-.... .|+.+|+++|++.-.+
T Consensus 143 ~~HiNsV~~~~~G~yLiS~R~~~--------------~i~~I~~~tG~I~W~l 181 (299)
T PF14269_consen 143 YFHINSVDKDDDGDYLISSRNTS--------------TIYKIDPSTGKIIWRL 181 (299)
T ss_pred ccEeeeeeecCCccEEEEecccC--------------EEEEEECCCCcEEEEe
Confidence 45689999999999777665433 7778887777764443
No 273
>PHA02790 Kelch-like protein; Provisional
Probab=73.66 E-value=95 Score=30.44 Aligned_cols=91 Identities=7% Similarity=-0.032 Sum_probs=47.2
Q ss_pred CCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecccccee--eEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 201 SDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFAN--GVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 201 ~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~--gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
-+|.||+.-.... ....+.+|||.+.+.+.+. .+..|. ..+..-+| .|||.- +.+.+|+++.
T Consensus 361 ~~g~IYviGG~~~-----------~~~~ve~ydp~~~~W~~~~-~m~~~r~~~~~~~~~~-~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 361 INNVIYVIGGHSE-----------TDTTTEYLLPNHDQWQFGP-STYYPHYKSCALVFGR-RLFLVG---RNAEFYCESS 424 (480)
T ss_pred ECCEEEEecCcCC-----------CCccEEEEeCCCCEEEeCC-CCCCccccceEEEECC-EEEEEC---CceEEecCCC
Confidence 4688998765321 1135778999888775533 233231 11222345 799975 3466777643
Q ss_pred CCCCceeeeecCCCC--CCCceeECCCCCEEEEecC
Q psy4771 279 PKQGKSEVFIDGLPG--LPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 279 ~~~~~~~~~~~~~~g--~Pdgi~~d~dG~l~va~~~ 312 (337)
. .-+...+ ++. .--++++- +|.|||.-..
T Consensus 425 ~---~W~~~~~-m~~~r~~~~~~v~-~~~IYviGG~ 455 (480)
T PHA02790 425 N---TWTLIDD-PIYPRDNPELIIV-DNKLLLIGGF 455 (480)
T ss_pred C---cEeEcCC-CCCCccccEEEEE-CCEEEEECCc
Confidence 2 2222222 211 11244443 6678887653
No 274
>KOG0639|consensus
Probab=73.58 E-value=53 Score=32.12 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=41.5
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCcEEEEEcCCC
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTG 142 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g 142 (337)
....|+...+|.|..||..+...+..|- ..-.....|.+.++| +||-.--.+.|+..|...+
T Consensus 521 akvcFsccsdGnI~vwDLhnq~~Vrqfq---------GhtDGascIdis~dGtklWTGGlDntvRcWDlreg 583 (705)
T KOG0639|consen 521 AKVCFSCCSDGNIAVWDLHNQTLVRQFQ---------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG 583 (705)
T ss_pred cceeeeeccCCcEEEEEcccceeeeccc---------CCCCCceeEEecCCCceeecCCCccceeehhhhhh
Confidence 4567789999999999974443343332 112335578888999 8886644466888887644
No 275
>KOG1036|consensus
Probab=73.07 E-value=62 Score=29.54 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=18.2
Q ss_pred cceEEECCCC-cEEEEECCCcEEEEEcCC
Q psy4771 114 PLGIKFDKNG-ALHVADAYFGLYKVNVTT 141 (337)
Q Consensus 114 P~Gl~~d~~G-~lyVad~~~gv~~vd~~~ 141 (337)
-..|.|++.+ +|.|+.+...+..+|...
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~ 44 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPA 44 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccc
Confidence 3468888665 888887654466665543
No 276
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=72.86 E-value=68 Score=28.44 Aligned_cols=104 Identities=16% Similarity=0.105 Sum_probs=54.5
Q ss_pred EEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEE---Eecccc-ceeeEEEccCCCEEEEEe--CCCCE
Q psy4771 197 VTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKV---LIANLH-FANGVELSADESFVIVAE--TMSSR 270 (337)
Q Consensus 197 v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~---~~~~~~-~p~gia~~~dg~~lyva~--~~~~~ 270 (337)
-.+|++|.+|+.+....- .++.+ +..+++... -...+. .-..+++++||.++-+.- ....+
T Consensus 71 PS~d~~g~~W~v~~~~~~------------~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~ 137 (253)
T PF10647_consen 71 PSWDPDGWVWTVDDGSGG------------VRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGR 137 (253)
T ss_pred ccccCCCCEEEEEcCCCc------------eEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCe
Confidence 358899999988875321 12222 211222211 111222 457899999999875444 33567
Q ss_pred EEEEEeeCCCCC------ceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 271 VHRYYLKGPKQG------KSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 271 I~~~~~~g~~~~------~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
|++--+.....+ ...........-...++--.++.|.|.....
T Consensus 138 v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 138 VYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred EEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 777666422122 1111111112234567777788877776554
No 277
>KOG0283|consensus
Probab=72.78 E-value=1.2e+02 Score=31.21 Aligned_cols=72 Identities=6% Similarity=-0.020 Sum_probs=43.8
Q ss_pred EEEe-eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCC-cEEEEECCCc-EEEEEcCCCe
Q psy4771 67 AVVK-HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNG-ALHVADAYFG-LYKVNVTTGQ 143 (337)
Q Consensus 67 ~i~~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G-~lyVad~~~g-v~~vd~~~g~ 143 (337)
+|.+ .++.|.+...|..+--|+++.-..+..|. ......+++|.|-. +.|++-.-.+ ++..+....+
T Consensus 374 DlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~----------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 374 DLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS----------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK 443 (712)
T ss_pred ecccccCCeeEeccccccEEeecCCCcceeeEEe----------cCCeeEEEEecccCCCcEeecccccceEEeecCcCe
Confidence 4445 57788888888877777775444443332 23567899999976 7777743333 5555544455
Q ss_pred EEEEe
Q psy4771 144 TEQLI 148 (337)
Q Consensus 144 ~~~l~ 148 (337)
+....
T Consensus 444 Vv~W~ 448 (712)
T KOG0283|consen 444 VVDWN 448 (712)
T ss_pred eEeeh
Confidence 54443
No 278
>KOG0294|consensus
Probab=72.73 E-value=78 Score=29.09 Aligned_cols=173 Identities=13% Similarity=0.136 Sum_probs=90.0
Q ss_pred eEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEecccc
Q psy4771 74 DLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDT 152 (337)
Q Consensus 74 ~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~ 152 (337)
.|.+...+|.|..|+.+.+..+..+. ..-++.++|++.|.|.|-.+-.+.+ +...|.-.|+.......
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK---------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-- 167 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLK---------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-- 167 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeec---------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc--
Confidence 56688889999999988876553332 2234588999999999988875555 55566655554333321
Q ss_pred ccCCCCCCCCCceeeCCCCCcc---ccc--ceeeeccccCCC---CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeec
Q psy4771 153 EIDGAKPQIPNSVTVDSDGQTG---QTE--QLISMDTEIDGA---KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTS 224 (337)
Q Consensus 153 ~~~g~~~~~P~~v~~~~~g~~~---~~~--~v~~~~~~~~~~---~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~ 224 (337)
+. .+..+..+++|..+ ..+ .|++++..---. ....+..+.++..+.+.+.-
T Consensus 168 ---~~---~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~--------------- 226 (362)
T KOG0294|consen 168 ---KN---KATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGG--------------- 226 (362)
T ss_pred ---CC---cceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEec---------------
Confidence 11 24445566666532 222 223222100000 00122333344333333322
Q ss_pred CCccEEEEcCCCCeeE-EEeccccceeeEE-EccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 225 GSGRLIQYNPKTKKNK-VLIANLHFANGVE-LSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~-~~~~~~~~p~gia-~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
.++.+...|.+....- .....-..--+|+ +......+.++.+..+.|.+.+++-
T Consensus 227 d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 227 DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred CCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 2235555555443221 1112222334565 3333336888888888888877753
No 279
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=71.42 E-value=6.9 Score=22.23 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=19.2
Q ss_pred CCCcEEEEECCCcEEEEEcCCCeEEE
Q psy4771 121 KNGALHVADAYFGLYKVNVTTGQTEQ 146 (337)
Q Consensus 121 ~~G~lyVad~~~gv~~vd~~~g~~~~ 146 (337)
.+|.+|+++....++.+|.++|+...
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEE
Confidence 45678888755558999998887653
No 280
>KOG1408|consensus
Probab=71.35 E-value=54 Score=33.58 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=66.3
Q ss_pred cceEEECCCCcEEEEE-CCCcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCC
Q psy4771 114 PLGIKFDKNGALHVAD-AYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQ 192 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad-~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~ 192 (337)
-..|++||.-.+.++- -...|..++.+.|+...........+|
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG------------------------------------ 642 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG------------------------------------ 642 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC------------------------------------
Confidence 3478888886444432 235688888877765544432122222
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE-EEeccccceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK-VLIANLHFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
.+--+..||.| +|++.+-++ -.|..||--+|+.. .+...-..-.|+-|.+|-++|. +-++.++|
T Consensus 643 ~lIKv~lDPSg-iY~atScsd-------------ktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlI-SvsgDgCI 707 (1080)
T KOG1408|consen 643 DLIKVILDPSG-IYLATSCSD-------------KTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLI-SVSGDGCI 707 (1080)
T ss_pred ceEEEEECCCc-cEEEEeecC-------------CceEEEEeccchhhhhhcCcchheeeeeecccchhhe-eecCCceE
Confidence 23345566765 454443322 26667776667642 2333445678999999998665 44567888
Q ss_pred EEEEee
Q psy4771 272 HRYYLK 277 (337)
Q Consensus 272 ~~~~~~ 277 (337)
.+..+.
T Consensus 708 FvW~lp 713 (1080)
T KOG1408|consen 708 FVWKLP 713 (1080)
T ss_pred EEEECc
Confidence 887764
No 281
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=70.31 E-value=78 Score=28.06 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=23.7
Q ss_pred ccceeeEEEccCCCEEEEEeCCCCEEEE-EEeeCC
Q psy4771 246 LHFANGVELSADESFVIVAETMSSRVHR-YYLKGP 279 (337)
Q Consensus 246 ~~~p~gia~~~dg~~lyva~~~~~~I~~-~~~~g~ 279 (337)
+.....++|.++++.++++......+.. +.++|.
T Consensus 165 ~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 165 LSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGG 199 (253)
T ss_pred cCcceeeeecCCCEEEEEeCCCCCceeEEEEccCC
Confidence 4566789999998766666666666666 666664
No 282
>KOG0310|consensus
Probab=69.96 E-value=1.1e+02 Score=29.65 Aligned_cols=181 Identities=10% Similarity=0.111 Sum_probs=98.6
Q ss_pred CccEEEe---eCCeEEEEecCcEEEEEeC-CceeEEEecCccccCccccCccCCcceEEECCC-CcEEEEECCCc-EEEE
Q psy4771 64 GPEAVVK---HKGDLYMGVDGGHILKLSG-GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAYFG-LYKV 137 (337)
Q Consensus 64 ~P~~i~~---~~g~ly~d~~~g~I~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~~g-v~~v 137 (337)
.|..... .++++++...++++.+|.. .+......+. ..-......++.|. ++++|+-+|.| |...
T Consensus 111 apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~---------~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 111 APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS---------GHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred CceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec---------CCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 4544443 5778887777777887754 3322222221 11133455566555 58999988877 6667
Q ss_pred EcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCc
Q psy4771 138 NVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSG 217 (337)
Q Consensus 138 d~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~ 217 (337)
|..... ..... .+- ......+..-+.|.+.++-.+.
T Consensus 182 DtR~~~-~~v~e----lnh----------------------------------g~pVe~vl~lpsgs~iasAgGn----- 217 (487)
T KOG0310|consen 182 DTRSLT-SRVVE----LNH----------------------------------GCPVESVLALPSGSLIASAGGN----- 217 (487)
T ss_pred EeccCC-ceeEE----ecC----------------------------------CCceeeEEEcCCCCEEEEcCCC-----
Confidence 765332 12211 110 0113456666777766666542
Q ss_pred eeeeeecCCccEEEEcCC-CCeeEEEe-ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeec-CCCCC
Q psy4771 218 LFEGLTSGSGRLIQYNPK-TKKNKVLI-ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID-GLPGL 294 (337)
Q Consensus 218 ~~~~~~~~~G~v~~~d~~-~~~~~~~~-~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~-~~~g~ 294 (337)
.+-++|.- +++..... .....-.++++..|+..|+-+. -.+.|.+|+.+. ..+... ..|+-
T Consensus 218 ----------~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s-LD~~VKVfd~t~-----~Kvv~s~~~~~p 281 (487)
T KOG0310|consen 218 ----------SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS-LDRHVKVFDTTN-----YKVVHSWKYPGP 281 (487)
T ss_pred ----------eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc-cccceEEEEccc-----eEEEEeeecccc
Confidence 33344444 23322222 2344567889998887666544 457788888543 222221 13343
Q ss_pred CCceeECCCC-CEEEEecCC
Q psy4771 295 PDNVKRDSKG-NFLVSLVCP 313 (337)
Q Consensus 295 Pdgi~~d~dG-~l~va~~~~ 313 (337)
.-.|++.+|+ ++++++..+
T Consensus 282 vLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 282 VLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred eeeEEecCCCceEEEecccc
Confidence 3567777766 488888776
No 283
>KOG0640|consensus
Probab=69.68 E-value=62 Score=29.72 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=38.8
Q ss_pred CcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCC
Q psy4771 113 RPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191 (337)
Q Consensus 113 ~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~ 191 (337)
....|.|.|.|....+...+- +..+|.++-+ -++.. ..+. +--
T Consensus 218 ~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q--cfvsa--nPd~--------------------------------qht 261 (430)
T KOG0640|consen 218 PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ--CFVSA--NPDD--------------------------------QHT 261 (430)
T ss_pred eeeeEeecCCCceEEEecCCCceeEEecccee--Eeeec--Cccc--------------------------------ccc
Confidence 356899999996655545565 5556665433 33321 0110 012
Q ss_pred CCCccEEEcCCCcEEEEcCC
Q psy4771 192 QIPNSVTVDSDGMVYWSDSS 211 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~ 211 (337)
...+++--++.|++|+|-+.
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSk 281 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASK 281 (430)
T ss_pred cceeEEEecCCccEEEEecc
Confidence 34678888999999999875
No 284
>KOG0268|consensus
Probab=69.25 E-value=58 Score=30.49 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=36.9
Q ss_pred CCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
.++.|..||...++...-+----.+|+|+|+| +.+.+++....+.++-||+.
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred cCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhh
Confidence 45688899977665432222234689999999 44788888888888887763
No 285
>KOG0649|consensus
Probab=69.23 E-value=83 Score=27.95 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=28.0
Q ss_pred cceEEECCC-CcEEEEECCCcEEEEEcCCCeEEEEec
Q psy4771 114 PLGIKFDKN-GALHVADAYFGLYKVNVTTGQTEQLIS 149 (337)
Q Consensus 114 P~Gl~~d~~-G~lyVad~~~gv~~vd~~~g~~~~l~~ 149 (337)
-+.|-+||. +.++.|-....++.+|.++|++++..+
T Consensus 117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc
Confidence 468999965 688888633449999999999887764
No 286
>KOG0308|consensus
Probab=68.48 E-value=1.4e+02 Score=30.25 Aligned_cols=71 Identities=11% Similarity=-0.014 Sum_probs=40.2
Q ss_pred eCCeEE-EEecCcEEEEEeCCce--eEEEecCcc--ccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCe
Q psy4771 71 HKGDLY-MGVDGGHILKLSGGKL--VPVVKLGKD--CYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQ 143 (337)
Q Consensus 71 ~~g~ly-~d~~~g~I~~~~~~~~--~~~~~~g~~--~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~ 143 (337)
.+..++ ++--+++|+.|+-+.. +.+..+-.. |+-. .+.-..-..++.++.|.++|+-.-.+ ++..|+.+++
T Consensus 128 k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~--sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ 204 (735)
T KOG0308|consen 128 KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG--SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK 204 (735)
T ss_pred cCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC--CCCccceeeeecCCcceEEEecCcccceEEecccccc
Confidence 455666 6667888999986432 112211110 1000 01112245788888898888854444 7778988664
No 287
>KOG0301|consensus
Probab=68.44 E-value=1.4e+02 Score=30.35 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=35.4
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEE
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHR 273 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~ 273 (337)
..++++-+++.+.-+ ..+|.|..++.++.-+..+...-.+-..|....+++ +.|+....+. .|
T Consensus 182 VRgL~vl~~~~flSc---------------sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrt-lr 244 (745)
T KOG0301|consen 182 VRGLAVLDDSHFLSC---------------SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRT-LR 244 (745)
T ss_pred eeeeEEecCCCeEee---------------cCCceEEEEeccCceeeeeeccceEEEEEEecCCCC-eEEEecCCce-EE
Confidence 567777766544322 224566666665445555555555666777554443 6665544444 34
Q ss_pred EE
Q psy4771 274 YY 275 (337)
Q Consensus 274 ~~ 275 (337)
++
T Consensus 245 iW 246 (745)
T KOG0301|consen 245 IW 246 (745)
T ss_pred Ee
Confidence 44
No 288
>KOG0284|consensus
Probab=68.20 E-value=78 Score=30.12 Aligned_cols=148 Identities=8% Similarity=0.002 Sum_probs=78.0
Q ss_pred EEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCCe
Q psy4771 67 AVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQ 143 (337)
Q Consensus 67 ~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~ 143 (337)
++++ .++.-| +.+.+|+|..|+.-..+.-..+. ...-.+..+...|.-.|+++-+... |-..|+++|.
T Consensus 185 dlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~---------GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 185 DLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR---------GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred eeccCCCCceeEEecCCCeEEEEeccCCchhheec---------cCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence 4455 355555 77888888888752111111111 2224477888888866666644444 5556887664
Q ss_pred -EEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeee
Q psy4771 144 -TEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGL 222 (337)
Q Consensus 144 -~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~ 222 (337)
+.++.. --+....+.+.++|+...|-+...
T Consensus 256 cl~tlh~----------------------------------------HKntVl~~~f~~n~N~Llt~skD~--------- 286 (464)
T KOG0284|consen 256 CLATLHG----------------------------------------HKNTVLAVKFNPNGNWLLTGSKDQ--------- 286 (464)
T ss_pred hhhhhhh----------------------------------------ccceEEEEEEcCCCCeeEEccCCc---------
Confidence 222211 012345677777776555544311
Q ss_pred ecCCccEEEEcCCCC-eeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 223 TSGSGRLIQYNPKTK-KNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~-~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
.+-.||..+. ++......-.....+++.|=...|+++-...+.|.-+.+.
T Consensus 287 -----~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 287 -----SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred -----eEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 3334443311 1111222233456677777655677777777777666654
No 289
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=67.07 E-value=11 Score=22.68 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=17.5
Q ss_pred EEeeCCeEEEEecCcEEEEEeC
Q psy4771 68 VVKHKGDLYMGVDGGHILKLSG 89 (337)
Q Consensus 68 i~~~~g~ly~d~~~g~I~~~~~ 89 (337)
+++.++.+|+...+|+++.++.
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEET
T ss_pred CEEECCEEEEEcCCCEEEEEeC
Confidence 3567899999999999999985
No 290
>KOG2096|consensus
Probab=67.05 E-value=1.1e+02 Score=28.37 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=25.1
Q ss_pred cEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEE
Q psy4771 228 RLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYY 275 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~ 275 (337)
.|..++.++..+..+...-..-...|++|+|++|-++... .-|.++.
T Consensus 210 ~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFT-pDVkVwE 256 (420)
T KOG2096|consen 210 KICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT-PDVKVWE 256 (420)
T ss_pred cEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCC-CCceEEE
Confidence 5555665522222222222334567899999887777654 3344433
No 291
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=66.94 E-value=18 Score=21.44 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=21.1
Q ss_pred CCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEE
Q psy4771 202 DGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL 242 (337)
Q Consensus 202 ~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~ 242 (337)
||++|.+..... ....|.|++++++++. .++
T Consensus 1 dg~lYGTT~~GG---------~~~~GTvf~~~~~g~~-t~L 31 (34)
T TIGR03803 1 GGTLYGTTSGGG---------ASGFGTLYRLSTAGGT-TVL 31 (34)
T ss_pred CCcEEEEcccCC---------CCCceeEEEEcCCCCe-EEE
Confidence 578898886432 2356899999998654 443
No 292
>KOG0276|consensus
Probab=66.83 E-value=1.5e+02 Score=29.99 Aligned_cols=116 Identities=14% Similarity=0.092 Sum_probs=65.1
Q ss_pred CCCCceeeCCCCCcc---cccceeeecc-ccCCCCCCCCccEEEcCCCcEEEEc-CCCC------c-----------cCc
Q psy4771 160 QIPNSVTVDSDGQTG---QTEQLISMDT-EIDGAKPQIPNSVTVDSDGMVYWSD-SSTK------Y-----------KSG 217 (337)
Q Consensus 160 ~~P~~v~~~~~g~~~---~~~~v~~~~~-~~~~~~~~~pn~v~vd~~G~lyvtd-~~~~------~-----------~~~ 217 (337)
..|+.++.+|+|+.+ .++..++..+ ..-.+.+....+.+..+|.+.|..- +..+ + .+.
T Consensus 352 iyPq~L~hsPNGrfV~VcgdGEyiIyTala~RnK~fG~~~eFvw~~dsne~avRes~~~vki~knfke~ksi~~~~~~e~ 431 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVCGDGEYIIYTALALRNKAFGSGLEFVWAADSNEFAVRESNGNVKIFKNFKEHKSIRPDMSAEG 431 (794)
T ss_pred cchHHhccCCCCcEEEEecCccEEEEEeeehhhcccccceeEEEcCCCCeEEEEecCCceEEEecceeccccccccceee
Confidence 589999999999998 4444443332 1222334555566666654434322 2211 1 011
Q ss_pred eee---eeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 218 LFE---GLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 218 ~~~---~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
++. +-...++.+..||=++++...-. -..|..+.++.+|..+-++...+.-|++|..+
T Consensus 432 i~gg~Llg~~ss~~~~fydW~~~~lVrrI--~v~~k~v~w~d~g~lVai~~d~Sfyil~~n~d 492 (794)
T KOG0276|consen 432 IFGGPLLGVRSSDFLCFYDWESGELVRRI--EVTSKHVYWSDNGELVAIAGDDSFYILKFNAD 492 (794)
T ss_pred ecCCceEEEEeCCeEEEEEcccceEEEEE--eeccceeEEecCCCEEEEEecCceeEEEecHH
Confidence 110 11234556677775555432222 13578899998888777777666778888754
No 293
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=66.06 E-value=1.1e+02 Score=28.12 Aligned_cols=27 Identities=7% Similarity=0.085 Sum_probs=15.3
Q ss_pred cceeeEEEccCCCEEEEEeCCCCEEEEEE
Q psy4771 247 HFANGVELSADESFVIVAETMSSRVHRYY 275 (337)
Q Consensus 247 ~~p~gia~~~dg~~lyva~~~~~~I~~~~ 275 (337)
..-..|.+++|+. ||+... .+.|..=+
T Consensus 187 ~riq~~gf~~~~~-lw~~~~-Gg~~~~s~ 213 (302)
T PF14870_consen 187 RRIQSMGFSPDGN-LWMLAR-GGQIQFSD 213 (302)
T ss_dssp S-EEEEEE-TTS--EEEEET-TTEEEEEE
T ss_pred ceehhceecCCCC-EEEEeC-CcEEEEcc
Confidence 3457789999974 776663 34555444
No 294
>KOG3567|consensus
Probab=65.79 E-value=1.4e+02 Score=29.10 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=40.3
Q ss_pred CccEEEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECC
Q psy4771 64 GPEAVVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY 131 (337)
Q Consensus 64 ~P~~i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~ 131 (337)
-|.+..+ -++..| +++.-+...+..+-........+...-.....+.+..|...++..+|.+.+++.+
T Consensus 169 vhyg~t~df~~~~d~TgV~mH~t~kp~pkla~~~L~l~~~tvp~~~~~~f~~~tsc~v~~n~~ihvfa~r 238 (501)
T KOG3567|consen 169 VHYGLTIDFDGNYDVTGVGMHQTEKPQPKLAKTMLLLGDGTVPGEGTKHFETPTSCAVEENGPIHVFAYR 238 (501)
T ss_pred eccccccCCCCCcccccceeeeeccCCchhhceEEeecCCccCCCCccccCCCceEEEecCcceeeEEee
Confidence 4555553 266667 7887776666655222222222321111122456777889999999999999864
No 295
>KOG0650|consensus
Probab=65.17 E-value=1.6e+02 Score=29.65 Aligned_cols=49 Identities=10% Similarity=0.249 Sum_probs=34.0
Q ss_pred cEEEEcCCCCe-eEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 228 RLIQYNPKTKK-NKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 228 ~v~~~d~~~~~-~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
.|..||...++ +..+..+..+-..+++++.|+.|++... .+++..|+++
T Consensus 588 ~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~-d~k~~WfDld 637 (733)
T KOG0650|consen 588 SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY-DKKMCWFDLD 637 (733)
T ss_pred ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC-CCeeEEEEcc
Confidence 34455544322 1234556778899999999998888775 5788889986
No 296
>KOG0308|consensus
Probab=62.98 E-value=1.5e+02 Score=29.98 Aligned_cols=153 Identities=13% Similarity=0.157 Sum_probs=77.2
Q ss_pred CC-eEEEEecCcEEEEEeCCce--eEEEecCccccCccccCccCCcceEEE-CCCCcEEEEECC-CcEEEEEcCCCeEEE
Q psy4771 72 KG-DLYMGVDGGHILKLSGGKL--VPVVKLGKDCYGFKYEQQCGRPLGIKF-DKNGALHVADAY-FGLYKVNVTTGQTEQ 146 (337)
Q Consensus 72 ~g-~ly~d~~~g~I~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~P~Gl~~-d~~G~lyVad~~-~gv~~vd~~~g~~~~ 146 (337)
++ .+.+...+-.|..|+.... .....++.. -.....++. -++..++++-.- +.|+..|.+++..+.
T Consensus 84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H---------~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l 154 (735)
T KOG0308|consen 84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTH---------KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATL 154 (735)
T ss_pred CCCceEEecCCceEEEeecccCcchhHhhhhcc---------cchheeeeecccCceeEEecCCCccEEEEEccCcchhh
Confidence 44 4446666777777776322 112222322 244567777 555566665322 348888887775433
Q ss_pred EeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCC
Q psy4771 147 LISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGS 226 (337)
Q Consensus 147 l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~ 226 (337)
+.+......-. + ...+-.....+|..+.|.+.++-.. .
T Consensus 155 ~~s~n~~t~~s---l-------------------------~sG~k~siYSLA~N~t~t~ivsGgt--------------e 192 (735)
T KOG0308|consen 155 VASFNNVTVNS---L-------------------------GSGPKDSIYSLAMNQTGTIIVSGGT--------------E 192 (735)
T ss_pred hhhcccccccc---C-------------------------CCCCccceeeeecCCcceEEEecCc--------------c
Confidence 33210000000 0 0001223345555555655554433 3
Q ss_pred ccEEEEcCCCCe-eEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 227 GRLIQYNPKTKK-NKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 227 G~v~~~d~~~~~-~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
+-|..+||.+++ +..+...-..-..+.+++||.++.-+. ..+.|...++
T Consensus 193 k~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s-SDgtIrlWdL 242 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS-SDGTIRLWDL 242 (735)
T ss_pred cceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC-CCceEEeeec
Confidence 466677777664 333444455667778888886655444 3455555554
No 297
>KOG1272|consensus
Probab=61.42 E-value=1.6e+02 Score=28.57 Aligned_cols=83 Identities=12% Similarity=0.236 Sum_probs=46.1
Q ss_pred ecCCccEEEEcCCCCeeE-EEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeEC
Q psy4771 223 TSGSGRLIQYNPKTKKNK-VLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRD 301 (337)
Q Consensus 223 ~~~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d 301 (337)
...+|.|-.+.|...+.. .++.....-++||++++|. ..++....+.+..+|+.... +...... |--...+++.
T Consensus 269 GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~--ql~t~~t--p~~a~~ls~S 343 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFY--QLHTYRT--PHPASNLSLS 343 (545)
T ss_pred cCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeecccc--ccceeec--CCCccccccc
Confidence 344566666666644321 1233344568999999994 55666566778888876422 1111111 2223567777
Q ss_pred CCCCEEEEe
Q psy4771 302 SKGNFLVSL 310 (337)
Q Consensus 302 ~dG~l~va~ 310 (337)
..|.|-++.
T Consensus 344 qkglLA~~~ 352 (545)
T KOG1272|consen 344 QKGLLALSY 352 (545)
T ss_pred cccceeeec
Confidence 776544443
No 298
>PRK10115 protease 2; Provisional
Probab=61.10 E-value=92 Score=32.18 Aligned_cols=75 Identities=13% Similarity=0.093 Sum_probs=44.6
Q ss_pred CCCccEEEcCCCc-EEEE-cCCCCccCceeeeeecCCccEEEEcCCCCeeE-EEeccccceeeEEEccCCCEEEEEeC--
Q psy4771 192 QIPNSVTVDSDGM-VYWS-DSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK-VLIANLHFANGVELSADESFVIVAET-- 266 (337)
Q Consensus 192 ~~pn~v~vd~~G~-lyvt-d~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyva~~-- 266 (337)
-...++.+++||+ |.++ |.... ..-.|+.+|..+|+.. ....+.. .++++++|++.+|++-.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~-----------E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~ 193 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSR-----------RQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHP 193 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCc-----------EEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecC
Confidence 4456778888887 3333 33211 1226888888877521 1122222 46999999988877643
Q ss_pred ---CCCEEEEEEeeCC
Q psy4771 267 ---MSSRVHRYYLKGP 279 (337)
Q Consensus 267 ---~~~~I~~~~~~g~ 279 (337)
....|+++++..+
T Consensus 194 ~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 194 VTLLPYQVWRHTIGTP 209 (686)
T ss_pred CCCCCCEEEEEECCCC
Confidence 2257888887543
No 299
>KOG4378|consensus
Probab=60.34 E-value=35 Score=33.27 Aligned_cols=85 Identities=13% Similarity=0.190 Sum_probs=52.5
Q ss_pred cCCccEEEEcCCCCeeEEEe--ccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeEC
Q psy4771 224 SGSGRLIQYNPKTKKNKVLI--ANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRD 301 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~~--~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d 301 (337)
..+|.|..+|..+.....-. .+-.-..|||++|.+..|+|+-....+|..||....+... .+..+ .| -..+++.
T Consensus 184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~-~l~y~-~P--lstvaf~ 259 (673)
T KOG4378|consen 184 SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD-RLTYS-HP--LSTVAFS 259 (673)
T ss_pred ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc-eeeec-CC--cceeeec
Confidence 34567777775433211101 1223457999999888899999999999999986443332 22233 22 2567888
Q ss_pred CCCCEEEEecC
Q psy4771 302 SKGNFLVSLVC 312 (337)
Q Consensus 302 ~dG~l~va~~~ 312 (337)
++|.+.++-..
T Consensus 260 ~~G~~L~aG~s 270 (673)
T KOG4378|consen 260 ECGTYLCAGNS 270 (673)
T ss_pred CCceEEEeecC
Confidence 88876655443
No 300
>KOG4497|consensus
Probab=59.94 E-value=85 Score=29.11 Aligned_cols=77 Identities=9% Similarity=0.119 Sum_probs=47.8
Q ss_pred CccEEEEcCCCCeeEE-EeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecC-CCCCCCceeECCC
Q psy4771 226 SGRLIQYNPKTKKNKV-LIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDG-LPGLPDNVKRDSK 303 (337)
Q Consensus 226 ~G~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~-~~g~Pdgi~~d~d 303 (337)
++.|...+....+... +..+-..-..+.++|||++|..+....-||.+..+...+ ...... -.+ --|+++.+|
T Consensus 70 ~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~----~~~~~~pK~~-~kg~~f~~d 144 (447)
T KOG4497|consen 70 DPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK----GYLLPHPKTN-VKGYAFHPD 144 (447)
T ss_pred cceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce----eEEecccccC-ceeEEECCC
Confidence 3455555443333222 223344456789999999999999999999999886432 122221 112 378999999
Q ss_pred CCEE
Q psy4771 304 GNFL 307 (337)
Q Consensus 304 G~l~ 307 (337)
|++-
T Consensus 145 g~f~ 148 (447)
T KOG4497|consen 145 GQFC 148 (447)
T ss_pred Ccee
Confidence 9743
No 301
>KOG0918|consensus
Probab=59.87 E-value=28 Score=33.01 Aligned_cols=64 Identities=20% Similarity=0.372 Sum_probs=44.2
Q ss_pred eeEEEccCCCEEEEEeCCCCEEEEEEeeCCCC----------------CceeeeecC---------------CCCCCCce
Q psy4771 250 NGVELSADESFVIVAETMSSRVHRYYLKGPKQ----------------GKSEVFIDG---------------LPGLPDNV 298 (337)
Q Consensus 250 ~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~----------------~~~~~~~~~---------------~~g~Pdgi 298 (337)
..|-+|-|.++|||+..-.+-|++|+++++.. +...++.+. +.|-|-=|
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~~ea~~vKGrkl~GGPQMl 394 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQPEALYVKGRKLRGGPQML 394 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCCCccceecCccccCCceeE
Confidence 56788889999999999999999999976421 111222111 12347778
Q ss_pred eECCCCC-EEEEecCC
Q psy4771 299 KRDSKGN-FLVSLVCP 313 (337)
Q Consensus 299 ~~d~dG~-l~va~~~~ 313 (337)
-+.-||+ |||+..--
T Consensus 395 QLSLDGKRLYVt~SLy 410 (476)
T KOG0918|consen 395 QLSLDGKRLYVTNSLY 410 (476)
T ss_pred EeccCCcEEEEEchhh
Confidence 8888895 99987533
No 302
>KOG2394|consensus
Probab=59.67 E-value=37 Score=33.37 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=36.2
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE-EEeccccceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK-VLIANLHFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
.+|.+++.+||....+-+ .+|.|-.||-++.++. ++..-+..--.++|+|||++| |+-....-|
T Consensus 292 ~in~f~FS~DG~~LA~VS--------------qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyI-vtGGEDDLV 356 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVS--------------QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYI-VTGGEDDLV 356 (636)
T ss_pred cccceeEcCCCceEEEEe--------------cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEE-EecCCcceE
Confidence 567777777776332222 2333333333333321 112224455689999999744 444444555
Q ss_pred EEEEee
Q psy4771 272 HRYYLK 277 (337)
Q Consensus 272 ~~~~~~ 277 (337)
.++.+.
T Consensus 357 tVwSf~ 362 (636)
T KOG2394|consen 357 TVWSFE 362 (636)
T ss_pred EEEEec
Confidence 555543
No 303
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=57.92 E-value=6.8 Score=24.74 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=11.3
Q ss_pred ChhhHHHHHHHHHHHHHHHhcC
Q psy4771 1 MAFFRNFFISVVVGIVAITFYP 22 (337)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (337)
|||||-.++. +++++.+++|-
T Consensus 1 ~kk~rwiili-~iv~~Cl~lyl 21 (47)
T PRK10299 1 MKKFRWVVLV-VVVLACLLLWA 21 (47)
T ss_pred CceeeehHHH-HHHHHHHHHHH
Confidence 8888865544 33333444443
No 304
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=57.82 E-value=1.7e+02 Score=29.94 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=49.0
Q ss_pred CCCCCccEEEcCCCc--EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccc-eeeEEEccCCCEEEEEeC
Q psy4771 190 KPQIPNSVTVDSDGM--VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHF-ANGVELSADESFVIVAET 266 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~--lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~-p~gia~~~dg~~lyva~~ 266 (337)
.+-..-++.+++|++ .|..|...+ ..=.+...|..+|+. +.+.+.. .-++++..|++.+|.+..
T Consensus 127 ~f~~Lg~~~~s~D~~~la~s~D~~G~-----------e~y~lr~kdL~tg~~--~~d~i~~~~~~~~Wa~d~~~lfYt~~ 193 (682)
T COG1770 127 DFFSLGAASISPDHNLLAYSVDVLGD-----------EQYTLRFKDLATGEE--LPDEITNTSGSFAWAADGKTLFYTRL 193 (682)
T ss_pred cceeeeeeeeCCCCceEEEEEecccc-----------cEEEEEEEecccccc--cchhhcccccceEEecCCCeEEEEEE
Confidence 455667888899887 444454322 011455556666643 3333332 567888888888877665
Q ss_pred CC----CEEEEEEeeCCCCCceeeeec
Q psy4771 267 MS----SRVHRYYLKGPKQGKSEVFID 289 (337)
Q Consensus 267 ~~----~~I~~~~~~g~~~~~~~~~~~ 289 (337)
.. .+|++..+.+.......++-+
T Consensus 194 d~~~rp~kv~~h~~gt~~~~d~lvyeE 220 (682)
T COG1770 194 DENHRPDKVWRHRLGTPGSSDELVYEE 220 (682)
T ss_pred cCCCCcceEEEEecCCCCCcceEEEEc
Confidence 43 356666665432333334443
No 305
>KOG0275|consensus
Probab=57.35 E-value=1.6e+02 Score=27.20 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=30.7
Q ss_pred EEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEE
Q psy4771 252 VELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFL 307 (337)
Q Consensus 252 ia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~ 307 (337)
.+++|.|.++|.... ...++.|....+++...-...+ -.+-|++-.+.-++.
T Consensus 443 ~~lSpkGewiYcigE-D~vlYCF~~~sG~LE~tl~VhE---kdvIGl~HHPHqNll 494 (508)
T KOG0275|consen 443 AILSPKGEWIYCIGE-DGVLYCFSVLSGKLERTLPVHE---KDVIGLTHHPHQNLL 494 (508)
T ss_pred EEecCCCcEEEEEcc-CcEEEEEEeecCceeeeeeccc---ccccccccCcccchh
Confidence 468999999997654 4688899886544433222222 124566555544433
No 306
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=57.30 E-value=15 Score=21.96 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=18.6
Q ss_pred CcEEEEECCCcEEEEEcCCCeEEEEec
Q psy4771 123 GALHVADAYFGLYKVNVTTGQTEQLIS 149 (337)
Q Consensus 123 G~lyVad~~~gv~~vd~~~g~~~~l~~ 149 (337)
|.+|++.....++.+|.++|++..-..
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeee
Confidence 467888432348889998888776654
No 307
>KOG0288|consensus
Probab=57.05 E-value=1.8e+02 Score=27.75 Aligned_cols=73 Identities=21% Similarity=0.167 Sum_probs=43.3
Q ss_pred CCccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc--cc---ceeeEEEccCCCEEEEEeC
Q psy4771 193 IPNSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN--LH---FANGVELSADESFVIVAET 266 (337)
Q Consensus 193 ~pn~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~--~~---~p~gia~~~dg~~lyva~~ 266 (337)
....+.+..+|. +..+ .. +..+-.+|..+.++...... +. --+-++|+||++ ...+-+
T Consensus 343 ~vtSl~ls~~g~~lLss-sR--------------Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS 406 (459)
T KOG0288|consen 343 RVTSLDLSMDGLELLSS-SR--------------DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS-YVAAGS 406 (459)
T ss_pred ceeeEeeccCCeEEeee-cC--------------CCceeeeecccccEEEEeeccccccccccceeEECCCCc-eeeecc
Confidence 356666667765 3333 22 22555666666665544322 21 235689999995 444555
Q ss_pred CCCEEEEEEeeCCCC
Q psy4771 267 MSSRVHRYYLKGPKQ 281 (337)
Q Consensus 267 ~~~~I~~~~~~g~~~ 281 (337)
..++|+..++.+++.
T Consensus 407 ~dgsv~iW~v~tgKl 421 (459)
T KOG0288|consen 407 ADGSVYIWSVFTGKL 421 (459)
T ss_pred CCCcEEEEEccCceE
Confidence 578899988876543
No 308
>KOG1036|consensus
Probab=56.83 E-value=1.6e+02 Score=26.98 Aligned_cols=179 Identities=15% Similarity=0.106 Sum_probs=90.0
Q ss_pred CCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccc
Q psy4771 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMD 151 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~ 151 (337)
.+.|.++.-+|.+..|+-.......++ ....--...+|.++-++|+.+..+.|.++|..++....+.+-
T Consensus 25 ~~~LLvssWDgslrlYdv~~~~l~~~~----------~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth- 93 (323)
T KOG1036|consen 25 SSDLLVSSWDGSLRLYDVPANSLKLKF----------KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTH- 93 (323)
T ss_pred CCcEEEEeccCcEEEEeccchhhhhhe----------ecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccC-
Confidence 456666668887777764221111111 111223467887777899988777799999998887777641
Q ss_pred cccCCCCCCCCCceeeCCCCCcc--cccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccE
Q psy4771 152 TEIDGAKPQIPNSVTVDSDGQTG--QTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRL 229 (337)
Q Consensus 152 ~~~~g~~~~~P~~v~~~~~g~~~--~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v 229 (337)
..+.. +-...-..|.++ ++++.+.+-+.-. ...-.+.+..+.+|..|...+. -+....+-.+
T Consensus 94 --~~~i~----ci~~~~~~~~vIsgsWD~~ik~wD~R~-----~~~~~~~d~~kkVy~~~v~g~~-----LvVg~~~r~v 157 (323)
T KOG1036|consen 94 --DEGIR----CIEYSYEVGCVISGSWDKTIKFWDPRN-----KVVVGTFDQGKKVYCMDVSGNR-----LVVGTSDRKV 157 (323)
T ss_pred --CCceE----EEEeeccCCeEEEcccCccEEEEeccc-----cccccccccCceEEEEeccCCE-----EEEeecCceE
Confidence 11110 000111233333 4443333322111 1111223334457766665431 1223344467
Q ss_pred EEEcCCCCeeEEE--ecccc-ceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 230 IQYNPKTKKNKVL--IANLH-FANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 230 ~~~d~~~~~~~~~--~~~~~-~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+.||..+-..-.. ...+. ....|++-|++ -=||+.+-.+||.+=.++.
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~ 208 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDD 208 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCC
Confidence 7777654322110 11233 23677777754 3666666677777655543
No 309
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=56.21 E-value=2.4e+02 Score=28.75 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=52.8
Q ss_pred ccccCceeccCcccCccEEE--------e-eCCeEEEEecCcEEEEEeCCceeEEEecCc-----------cccCccccC
Q psy4771 50 KLNNAEKLFENEIHGPEAVV--------K-HKGDLYMGVDGGHILKLSGGKLVPVVKLGK-----------DCYGFKYEQ 109 (337)
Q Consensus 50 ~l~~~~~~~~g~~~~P~~i~--------~-~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~-----------~~~~~~~~~ 109 (337)
.|..+=++-.|.+..|++.- . -++++|+....++++-+|..+.++.-++-. .|++...-
T Consensus 183 nL~~AWty~TGD~k~~~d~~e~t~e~tPLkvgdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~- 261 (773)
T COG4993 183 NLQVAWTYRTGDVKQPEDPGETTNEVTPLKVGDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYG- 261 (773)
T ss_pred ccceeEEEecCcccCCCCcccccccccceEECCEEEEecCcceeEEeeccCCceeeecCCCCCCCcccccccccceecc-
Confidence 35555566677777777721 1 488999877788899998744443333211 13331110
Q ss_pred ccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEe
Q psy4771 110 QCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLI 148 (337)
Q Consensus 110 ~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~ 148 (337)
..+....--...++|.-.....++.+|.++|++..-.
T Consensus 262 --~a~a~~k~pc~~rIflpt~DarlIALdA~tGkvc~~F 298 (773)
T COG4993 262 --AAKADAKSPCPRRIFLPTADARLIALDADTGKVCWSF 298 (773)
T ss_pred --cccccccCCCceeEEeecCCceEEEEeCCCCcEehee
Confidence 0000000001125776665566888888888776543
No 310
>KOG4547|consensus
Probab=56.15 E-value=2.2e+02 Score=28.31 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=46.4
Q ss_pred eeeeecCCccEEEEcCCCCeeEEEeccccceeeE--EE-ccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCC
Q psy4771 219 FEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGV--EL-SADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLP 295 (337)
Q Consensus 219 ~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gi--a~-~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~P 295 (337)
..+...+.|.|+.|+...|++..-...-..+.++ .. +.+-..||-+.. ..++..+...... ....+-. .+..+
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~a-d~~v~~~~~~~~~--~~~~~~~-~~~~~ 147 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGA-DLKVVYILEKEKV--IIRIWKE-QKPLV 147 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCC-ceeEEEEecccce--eeeeecc-CCCcc
Confidence 3445788899999999999886655433333332 22 223234443332 2333333332211 1222222 23347
Q ss_pred CceeECCCCCEEEEe
Q psy4771 296 DNVKRDSKGNFLVSL 310 (337)
Q Consensus 296 dgi~~d~dG~l~va~ 310 (337)
..+++.+||.+.+..
T Consensus 148 ~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 148 SSLCISPDGKILLTA 162 (541)
T ss_pred ceEEEcCCCCEEEec
Confidence 889999998755533
No 311
>KOG4649|consensus
Probab=55.78 E-value=1.6e+02 Score=26.60 Aligned_cols=37 Identities=14% Similarity=0.035 Sum_probs=21.1
Q ss_pred CCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEe
Q psy4771 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLI 148 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~ 148 (337)
+.|.=+.-|..-.+|++.-.+.+..+|+.+|++..-.
T Consensus 13 aspLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ 49 (354)
T KOG4649|consen 13 ASPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEA 49 (354)
T ss_pred CCcEEEecCCceEEEEecCCceEEEecCCCCcEEeeh
Confidence 3455455444434555542234777899988776543
No 312
>KOG0285|consensus
Probab=55.60 E-value=69 Score=29.99 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=51.4
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEec-cccceeeEEEccCCCEEEEEeCCCC
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-NLHFANGVELSADESFVIVAETMSS 269 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyva~~~~~ 269 (337)
+++...++|||- +=||+..+. ++.+-.+|.++|++..-+. ....-.|+++++-.-+++. .....
T Consensus 151 lgWVr~vavdP~-n~wf~tgs~-------------DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs-~gedk 215 (460)
T KOG0285|consen 151 LGWVRSVAVDPG-NEWFATGSA-------------DRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFS-AGEDK 215 (460)
T ss_pred cceEEEEeeCCC-ceeEEecCC-------------CceeEEEEcccCeEEEeecchhheeeeeeecccCceEEE-ecCCC
Confidence 678899999995 656665543 3467778888998876555 3567799999977654444 34456
Q ss_pred EEEEEEeeC
Q psy4771 270 RVHRYYLKG 278 (337)
Q Consensus 270 ~I~~~~~~g 278 (337)
.|..+|+..
T Consensus 216 ~VKCwDLe~ 224 (460)
T KOG0285|consen 216 QVKCWDLEY 224 (460)
T ss_pred eeEEEechh
Confidence 788888754
No 313
>KOG2106|consensus
Probab=54.14 E-value=2.3e+02 Score=27.96 Aligned_cols=88 Identities=19% Similarity=0.169 Sum_probs=53.9
Q ss_pred CCeEEEEecCcEEEEEeCC--cee-EEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEe
Q psy4771 72 KGDLYMGVDGGHILKLSGG--KLV-PVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLI 148 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~--~~~-~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~ 148 (337)
+..+-+....+.++.|+.. .+. ....|.+. .. .....++|.++|.++-.|+...|...++.+.++..-+
T Consensus 212 d~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~-------ek-k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~ 283 (626)
T KOG2106|consen 212 DPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKR-------EK-KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQV 283 (626)
T ss_pred CCcEEEEeCCceEEEEEccCCceEEEeeccccc-------cc-eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEe
Confidence 6667777888889999862 221 12222211 22 5578999999999999997666888887665554443
Q ss_pred ccccccCCCCCCCCCceeeCCCCCcc
Q psy4771 149 SMDTEIDGAKPQIPNSVTVDSDGQTG 174 (337)
Q Consensus 149 ~~~~~~~g~~~~~P~~v~~~~~g~~~ 174 (337)
. ..+|. =-.+....+|.++
T Consensus 284 ~---aH~gg----v~~L~~lr~Gtll 302 (626)
T KOG2106|consen 284 H---AHDGG----VFSLCMLRDGTLL 302 (626)
T ss_pred e---ecCCc----eEEEEEecCccEe
Confidence 2 12221 1124455666666
No 314
>KOG0292|consensus
Probab=54.08 E-value=3e+02 Score=29.31 Aligned_cols=173 Identities=10% Similarity=0.051 Sum_probs=90.4
Q ss_pred CCcceEEECCCCcEEEEECCC-cEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCC-CCCcc-cccceeeeccccCC
Q psy4771 112 GRPLGIKFDKNGALHVADAYF-GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGQTG-QTEQLISMDTEIDG 188 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~-gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~-~g~~~-~~~~v~~~~~~~~~ 188 (337)
....+-.|.|.-.++|+.+-. .|+..|-.+-+.+.... |. ++..++-.. ++.+. +.+.|....-+...
T Consensus 136 HYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~p------g~---~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD 206 (1202)
T KOG0292|consen 136 HYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAP------GS---LEDQMRGQQGNSDLFGQTDAVVKHVLEGHD 206 (1202)
T ss_pred eEEEeeccCCccceEEEecccceEEEEeecchhccCCCC------CC---chhhhhccccchhhcCCcCeeeeeeecccc
Confidence 456677788876788875543 36666664322222221 10 111111111 01111 33444333322211
Q ss_pred CCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCe--eEEEeccccceeeEEEccCCCEEEEEeC
Q psy4771 189 AKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK--NKVLIANLHFANGVELSADESFVIVAET 266 (337)
Q Consensus 189 ~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyva~~ 266 (337)
...|=.++.+.--+.|+-...+ .-.+||++. ++. +.........-.++-+.|..+ +.++++
T Consensus 207 ---RGVNwaAfhpTlpliVSG~DDR------------qVKlWrmne-tKaWEvDtcrgH~nnVssvlfhp~q~-lIlSns 269 (1202)
T KOG0292|consen 207 ---RGVNWAAFHPTLPLIVSGADDR------------QVKLWRMNE-TKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNS 269 (1202)
T ss_pred ---cccceEEecCCcceEEecCCcc------------eeeEEEecc-ccceeehhhhcccCCcceEEecCccc-eeEecC
Confidence 2345566665434555544321 226788874 333 233344556678888998774 888888
Q ss_pred CCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 267 MSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 267 ~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
....|.+++++..+ ..+.|-. ..+.-+=++..+.+++|.|.+.+
T Consensus 270 EDksirVwDm~kRt--~v~tfrr-endRFW~laahP~lNLfAAgHDs 313 (1202)
T KOG0292|consen 270 EDKSIRVWDMTKRT--SVQTFRR-ENDRFWILAAHPELNLFAAGHDS 313 (1202)
T ss_pred CCccEEEEeccccc--ceeeeec-cCCeEEEEEecCCcceeeeecCC
Confidence 88899999986432 2334321 12223456777777777777665
No 315
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=52.29 E-value=71 Score=28.57 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=11.4
Q ss_pred ccEEEcCCCcEEEE
Q psy4771 195 NSVTVDSDGMVYWS 208 (337)
Q Consensus 195 n~v~vd~~G~lyvt 208 (337)
..+.|++||.|+..
T Consensus 147 ~~~~I~~dG~I~~~ 160 (260)
T PRK12694 147 TSLTIGKDGTVSVT 160 (260)
T ss_pred ceeEECCCCeEEEe
Confidence 47899999999764
No 316
>KOG0295|consensus
Probab=51.67 E-value=86 Score=29.35 Aligned_cols=141 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred EEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCc
Q psy4771 117 IKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPN 195 (337)
Q Consensus 117 l~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn 195 (337)
+-+.|+-.+.++.+.++ |..+|..+|+...-... -..+.+
T Consensus 114 v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG---------------------------------------Ht~sv~ 154 (406)
T KOG0295|consen 114 VIFHPSEALVVSASEDATIKVFDTETGELERSLRG---------------------------------------HTDSVF 154 (406)
T ss_pred eeeccCceEEEEecCCceEEEEEccchhhhhhhhc---------------------------------------ccccee
Q ss_pred cEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEE
Q psy4771 196 SVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYY 275 (337)
Q Consensus 196 ~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~ 275 (337)
+|.++..|...++.++ +..-.+|.++..-..++.+...-..-..+++-|-|+ -..+.+..+.|...+
T Consensus 155 di~~~a~Gk~l~tcSs------------Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We 221 (406)
T KOG0295|consen 155 DISFDASGKYLATCSS------------DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWE 221 (406)
T ss_pred EEEEecCccEEEecCC------------ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEe
Q ss_pred eeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecC
Q psy4771 276 LKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 276 ~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~ 312 (337)
.+ .+...-...+.+..-.-+++..||.|..+...
T Consensus 222 ~~---tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 222 CD---TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred cc---cceeEEeccCchHhEEEEEecCCeeEEEecCC
No 317
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=51.60 E-value=2e+02 Score=26.49 Aligned_cols=27 Identities=26% Similarity=0.095 Sum_probs=19.3
Q ss_pred ceEEECCCCcEEEEECCCcEEEEEcCCC
Q psy4771 115 LGIKFDKNGALHVADAYFGLYKVNVTTG 142 (337)
Q Consensus 115 ~Gl~~d~~G~lyVad~~~gv~~vd~~~g 142 (337)
+.+++..+ .-||+....|+..+|....
T Consensus 175 ~~v~ISGn-~AYvA~~d~GL~ivDVSnp 201 (370)
T COG5276 175 HDVAISGN-YAYVAWRDGGLTIVDVSNP 201 (370)
T ss_pred eeEEEecC-eEEEEEeCCCeEEEEccCC
Confidence 45677433 8899987788888886543
No 318
>KOG0306|consensus
Probab=51.50 E-value=3e+02 Score=28.58 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=46.6
Q ss_pred cEEEEcCCCCee-EEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEee--CC--------CCCceeeeecCCCCCCC
Q psy4771 228 RLIQYNPKTKKN-KVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLK--GP--------KQGKSEVFIDGLPGLPD 296 (337)
Q Consensus 228 ~v~~~d~~~~~~-~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~--g~--------~~~~~~~~~~~~~g~Pd 296 (337)
.+-.+|.++... .+..+.-.--.++++++ .+.|+......+.+|++. .. .......|.-..-+.+.
T Consensus 172 ~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i 248 (888)
T KOG0306|consen 172 MIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREI 248 (888)
T ss_pred eEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCcee
Confidence 444445444432 33444444567788876 356666666666666662 11 11123344444456789
Q ss_pred ceeECCCCCEEEEecCC
Q psy4771 297 NVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 297 gi~~d~dG~l~va~~~~ 313 (337)
.++.|.++++.+.-...
T Consensus 249 ~l~~d~s~r~~~c~g~d 265 (888)
T KOG0306|consen 249 NLVTDFSDRFLVCQGAD 265 (888)
T ss_pred EEeecCcccEEEEecch
Confidence 99999999866555433
No 319
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=50.99 E-value=34 Score=20.22 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=13.0
Q ss_pred eeeEEEccCCCEEEEEeCC
Q psy4771 249 ANGVELSADESFVIVAETM 267 (337)
Q Consensus 249 p~gia~~~dg~~lyva~~~ 267 (337)
-...+++|||++|+++...
T Consensus 11 ~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp EEEEEE-TTSSEEEEEEEC
T ss_pred ccCEEEecCCCEEEEEecC
Confidence 3467899999988766543
No 320
>PRK13791 lysozyme inhibitor; Provisional
Probab=50.73 E-value=1.1e+02 Score=23.52 Aligned_cols=18 Identities=6% Similarity=0.039 Sum_probs=11.1
Q ss_pred ChhhHHHHHHHHHHHHHH
Q psy4771 1 MAFFRNFFISVVVGIVAI 18 (337)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ 18 (337)
|++||+.++..+++++..
T Consensus 1 ~~~mk~~~~~~~~~~ls~ 18 (113)
T PRK13791 1 MMKRKLIPFTLFLAALSA 18 (113)
T ss_pred CchHHHHHHHHHHHHHhh
Confidence 788888666654444333
No 321
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=49.33 E-value=2.5e+02 Score=26.94 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=18.1
Q ss_pred CCcceEEECCCCcEEEEECCCcEEEE
Q psy4771 112 GRPLGIKFDKNGALHVADAYFGLYKV 137 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~gv~~v 137 (337)
.+..++.+.++|.+|++....++++-
T Consensus 281 ~~l~~v~~~~dg~l~l~g~~G~l~~S 306 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLTRGGGLYVS 306 (398)
T ss_pred cceeeeeEcCCCCEEEEeCCceEEEe
Confidence 44568888999999998654444443
No 322
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=48.82 E-value=1.9e+02 Score=25.50 Aligned_cols=67 Identities=22% Similarity=0.332 Sum_probs=44.3
Q ss_pred eCCeEEEEecCcEEEEEeCC--ceeEE--EecCccccCccccCccCCcceEEECCC-CcEEEEECCCcEEEEEcCCCeEE
Q psy4771 71 HKGDLYMGVDGGHILKLSGG--KLVPV--VKLGKDCYGFKYEQQCGRPLGIKFDKN-GALHVADAYFGLYKVNVTTGQTE 145 (337)
Q Consensus 71 ~~g~ly~d~~~g~I~~~~~~--~~~~~--~~~g~~~~~~~~~~~~~~P~Gl~~d~~-G~lyVad~~~gv~~vd~~~g~~~ 145 (337)
.+|.||.=...++||.+++. ....+ ..+. ....+.+-|+-|+|- .+|-|......-+|+++++|.+.
T Consensus 37 a~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~--------~al~g~~~gvDFNP~aDRlRvvs~~GqNlR~npdtGav~ 108 (236)
T PF14339_consen 37 ANGQLYGLGSTGRLYTINPATGAATPVGASPLT--------VALSGTAFGVDFNPAADRLRVVSNTGQNLRLNPDTGAVT 108 (236)
T ss_pred CCCCEEEEeCCCcEEEEECCCCeEEEeeccccc--------ccccCceEEEecCcccCcEEEEccCCcEEEECCCCCCce
Confidence 48999955667889999983 33333 1111 122244778889886 58877754455888999888743
No 323
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=48.49 E-value=1e+02 Score=27.95 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=14.6
Q ss_pred ccceeeEEEccCCCEEEEEeCC
Q psy4771 246 LHFANGVELSADESFVIVAETM 267 (337)
Q Consensus 246 ~~~p~gia~~~dg~~lyva~~~ 267 (337)
+..||.|+.+.|++.+.|.+.+
T Consensus 170 ~~~~n~ia~s~dng~vaVg~rG 191 (339)
T COG4447 170 LAVPNEIARSADNGYVAVGARG 191 (339)
T ss_pred hhhhhhhhhhccCCeEEEecCc
Confidence 4567777777777666666644
No 324
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=48.00 E-value=2.1e+02 Score=26.74 Aligned_cols=80 Identities=9% Similarity=0.158 Sum_probs=50.9
Q ss_pred CCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc---------cc--ceeeEEEccCCC
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN---------LH--FANGVELSADES 259 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~---------~~--~p~gia~~~dg~ 259 (337)
..++-.++.-.+|.+|++.-+.... .-=.||.+..-+.+.+++.+- -. --..+.++.+|+
T Consensus 182 GTf~yNmgAl~nGH~Y~asLSG~~~---------SPLKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGn 252 (442)
T PF15416_consen 182 GTFSYNMGALVNGHSYLASLSGGKA---------SPLKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGN 252 (442)
T ss_pred cccccchhhhcCCeEEEEeccCCCC---------CceEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCc
Confidence 3456667777789999988764310 111677777666655554421 00 112456665543
Q ss_pred -EEEEEeCCCCEEEEEEeeCC
Q psy4771 260 -FVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 260 -~lyva~~~~~~I~~~~~~g~ 279 (337)
++++.|.....|+|+.+++-
T Consensus 253 GyiFFgdnaat~ilR~~vsn~ 273 (442)
T PF15416_consen 253 GYIFFGDNAATNILRFTVSNY 273 (442)
T ss_pred eEEEecCCccceEEEEEccCc
Confidence 78999988999999999763
No 325
>KOG4547|consensus
Probab=47.28 E-value=3e+02 Score=27.36 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=66.0
Q ss_pred EEEEecCcEEEEEeC--CceeEEEecCccccCccccCccCCcceEEEC-CCCcEEEEECCCcEEEEEcCCCeEEEEeccc
Q psy4771 75 LYMGVDGGHILKLSG--GKLVPVVKLGKDCYGFKYEQQCGRPLGIKFD-KNGALHVADAYFGLYKVNVTTGQTEQLISMD 151 (337)
Q Consensus 75 ly~d~~~g~I~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d-~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~ 151 (337)
+..+...|.|+-++. |+.+.....+ ...+..+.+... .-|.||-+++...+..++...+++......
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st~---------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~- 142 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLSTD---------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE- 142 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEecC---------CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc-
Confidence 346777787777765 4433221111 111222333322 236778777666788888887776666531
Q ss_pred cccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEE
Q psy4771 152 TEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQ 231 (337)
Q Consensus 152 ~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~ 231 (337)
.-..+..+++.+||.+..+-+. .|-.
T Consensus 143 --------------------------------------~~~~~~sl~is~D~~~l~~as~----------------~ik~ 168 (541)
T KOG4547|consen 143 --------------------------------------QKPLVSSLCISPDGKILLTASR----------------QIKV 168 (541)
T ss_pred --------------------------------------CCCccceEEEcCCCCEEEeccc----------------eEEE
Confidence 1224678889999887665544 6666
Q ss_pred EcCCCCeeEEEeccccce-eeEEEc
Q psy4771 232 YNPKTKKNKVLIANLHFA-NGVELS 255 (337)
Q Consensus 232 ~d~~~~~~~~~~~~~~~p-~gia~~ 255 (337)
+|..++++..-..+...| +.+.|.
T Consensus 169 ~~~~~kevv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 169 LDIETKEVVITFTGHGSPVRTLSFT 193 (541)
T ss_pred EEccCceEEEEecCCCcceEEEEEE
Confidence 676677655444444433 334443
No 326
>KOG2394|consensus
Probab=46.88 E-value=75 Score=31.35 Aligned_cols=21 Identities=14% Similarity=-0.086 Sum_probs=15.1
Q ss_pred CCCCccEEEcCCCcEEEEcCC
Q psy4771 191 PQIPNSVTVDSDGMVYWSDSS 211 (337)
Q Consensus 191 ~~~pn~v~vd~~G~lyvtd~~ 211 (337)
+...-.++.+|||+..+|---
T Consensus 332 FGGLLCvcWSPDGKyIvtGGE 352 (636)
T KOG2394|consen 332 FGGLLCVCWSPDGKYIVTGGE 352 (636)
T ss_pred ccceEEEEEcCCccEEEecCC
Confidence 445678888999987766543
No 327
>KOG2395|consensus
Probab=46.54 E-value=1.5e+02 Score=29.45 Aligned_cols=34 Identities=6% Similarity=-0.083 Sum_probs=22.1
Q ss_pred cceEEECCCCcEEEEECCCcEEEEEcCCCeEEEE
Q psy4771 114 PLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l 147 (337)
=.+.+...+|.+.|+.....|+.+|.-+...++.
T Consensus 433 Fsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTA 466 (644)
T KOG2395|consen 433 FSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTA 466 (644)
T ss_pred cceeeecCCceEEEeecCCcEEeehhhhhhhhhc
Confidence 3467777888888886544588888644334333
No 328
>PRK13613 lipoprotein LpqB; Provisional
Probab=46.18 E-value=3.4e+02 Score=27.63 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=42.9
Q ss_pred CCccEEEcCCCc--EEEEcCCCCccCcee--eeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEE-E--e
Q psy4771 193 IPNSVTVDSDGM--VYWSDSSTKYKSGLF--EGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIV-A--E 265 (337)
Q Consensus 193 ~pn~v~vd~~G~--lyvtd~~~~~~~~~~--~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv-a--~ 265 (337)
....+.+++||. ..+.+.... ..++ .+..+..|. .++ .....+...+..+..++|..+. .|.| + +
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~g~--~~v~va~V~R~~~G~-~~l----~~~~~l~~~l~~v~~~~W~~~~-sL~Vlg~~~ 527 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKDGR--RSLQIGRIVRDAKAV-VSV----EEFRSLAPELEDVTDMSWAGDS-QLVVLGREE 527 (599)
T ss_pred EeEEEEECCCccEEEEEEecCCC--cEEEEEEEEeCCCCc-EEe----eccEEeccCCCccceeEEcCCC-EEEEEeccC
Confidence 367788888884 444543211 1111 112233333 222 1123344455568899998777 5766 3 2
Q ss_pred CCCCEEEEEEeeCC
Q psy4771 266 TMSSRVHRYYLKGP 279 (337)
Q Consensus 266 ~~~~~I~~~~~~g~ 279 (337)
.+...++.+.++|.
T Consensus 528 ~~~~~v~~v~vdG~ 541 (599)
T PRK13613 528 GGVQQARYVQVDGS 541 (599)
T ss_pred CCCcceEEEecCCc
Confidence 23467888998875
No 329
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=46.09 E-value=1e+02 Score=27.63 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=11.4
Q ss_pred ccEEEcCCCcEEEE
Q psy4771 195 NSVTVDSDGMVYWS 208 (337)
Q Consensus 195 n~v~vd~~G~lyvt 208 (337)
..+.|++||.|+..
T Consensus 149 ~~i~I~~dG~I~~~ 162 (264)
T PRK12816 149 NSITISEEGIVSVK 162 (264)
T ss_pred ccEEECCCCeEEEe
Confidence 47999999998764
No 330
>KOG0641|consensus
Probab=43.79 E-value=2.3e+02 Score=24.91 Aligned_cols=87 Identities=13% Similarity=0.172 Sum_probs=49.1
Q ss_pred ceeeeccccCCCCC--CCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCee-EEEeccccceeeEEE
Q psy4771 178 QLISMDTEIDGAKP--QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN-KVLIANLHFANGVEL 254 (337)
Q Consensus 178 ~v~~~~~~~~~~~~--~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~-~~~~~~~~~p~gia~ 254 (337)
.|-.++..+.+..+ .....++|||.|++.++..... .-..||..++.. ........--..+.|
T Consensus 216 ~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds--------------sc~lydirg~r~iq~f~phsadir~vrf 281 (350)
T KOG0641|consen 216 CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS--------------SCMLYDIRGGRMIQRFHPHSADIRCVRF 281 (350)
T ss_pred eeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC--------------ceEEEEeeCCceeeeeCCCccceeEEEe
Confidence 44445544444433 4567899999999988765321 111222222322 111112223467888
Q ss_pred ccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 255 SADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 255 ~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
+|.- +...+-+..+.|..-++.|.
T Consensus 282 sp~a-~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 282 SPGA-HYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CCCc-eEEEEecccceEEEeecccc
Confidence 8866 45556666788888888775
No 331
>KOG2395|consensus
Probab=42.64 E-value=3.6e+02 Score=26.92 Aligned_cols=148 Identities=18% Similarity=0.272 Sum_probs=73.3
Q ss_pred CCcc-eEEECCCCcEEEEECC--CcEEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCC---------cc--ccc
Q psy4771 112 GRPL-GIKFDKNGALHVADAY--FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQ---------TG--QTE 177 (337)
Q Consensus 112 ~~P~-Gl~~d~~G~lyVad~~--~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~---------~~--~~~ 177 (337)
..|+ -|..+.+.+|+..+.. ++++++|.+.|++..--.....+ .-+.+.++++ ++ +.+
T Consensus 333 ~~P~K~mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di--------~mv~~t~d~K~~Ql~~e~TlvGLs~n 404 (644)
T KOG2395|consen 333 IDPHKAMLHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDI--------NMVDITPDFKFAQLTSEQTLVGLSDN 404 (644)
T ss_pred cCcchhhhhccccceEeeCCCCcCcceeeecccceeeeEeeccCCc--------ceeeccCCcchhcccccccEEeecCC
Confidence 3455 3444555678777755 56999999988865433211010 1122223332 22 556
Q ss_pred ceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCc----cCceeeeeecCCccEEEEcCCCCeeEEEeccccce-eeE
Q psy4771 178 QLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY----KSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA-NGV 252 (337)
Q Consensus 178 ~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~----~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p-~gi 252 (337)
+|..++.+.++. |=+++.. +.=|.+-..... .++ +.+.....|.|--||.-.........++..| ..|
T Consensus 405 ~vfriDpRv~~~-----~kl~~~q-~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 405 SVFRIDPRVQGK-----NKLAVVQ-SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred ceEEecccccCc-----ceeeeee-ccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeE
Confidence 777666543332 1111111 111111100000 000 1223444566666775433334445555444 688
Q ss_pred EEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 253 ELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 253 a~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
.++.||++|..+- ...+..++.
T Consensus 478 dvtadGKwil~Tc--~tyLlLi~t 499 (644)
T KOG2395|consen 478 DVTADGKWILATC--KTYLLLIDT 499 (644)
T ss_pred EeeccCcEEEEec--ccEEEEEEE
Confidence 8999999887765 446666665
No 332
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=42.53 E-value=2e+02 Score=29.05 Aligned_cols=68 Identities=10% Similarity=0.086 Sum_probs=49.1
Q ss_pred eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEe
Q psy4771 243 IANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310 (337)
Q Consensus 243 ~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~ 310 (337)
..+.-.|.=||+++....+-|+...-|-|++|.+....+-+...+--.....|-||++=.|.-+.+-.
T Consensus 335 IPGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilV 402 (671)
T PF15390_consen 335 IPGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILV 402 (671)
T ss_pred cccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEe
Confidence 45677899999999999999999888999999997644444332221123469999998887554444
No 333
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=41.93 E-value=1.3e+02 Score=26.90 Aligned_cols=14 Identities=50% Similarity=0.525 Sum_probs=11.2
Q ss_pred ccEEEcCCCcEEEE
Q psy4771 195 NSVTVDSDGMVYWS 208 (337)
Q Consensus 195 n~v~vd~~G~lyvt 208 (337)
..+.|++||.|+..
T Consensus 145 ~~~~I~~dG~i~~~ 158 (259)
T TIGR02488 145 TSITVGSDGEVSVR 158 (259)
T ss_pred ceEEECCCCeEEEe
Confidence 36999999998764
No 334
>KOG1538|consensus
Probab=41.61 E-value=4.1e+02 Score=27.34 Aligned_cols=61 Identities=7% Similarity=0.069 Sum_probs=36.6
Q ss_pred ceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCC-EEEEecCC
Q psy4771 248 FANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN-FLVSLVCP 313 (337)
Q Consensus 248 ~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~-l~va~~~~ 313 (337)
-|..|..-++|.++.+.-+. ..+.-|.-+|-.+|+... .......+++.++|. +-+++..+
T Consensus 224 dP~CisYf~NGEy~LiGGsd-k~L~~fTR~GvrLGTvg~----~D~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 224 DPCCISYFTNGEYILLGGSD-KQLSLFTRDGVRLGTVGE----QDSWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred CchhheeccCCcEEEEccCC-CceEEEeecCeEEeeccc----cceeEEEEEEccCCceEEEEEccC
Confidence 47788888999888886643 345556656644444322 223466777777775 33444333
No 335
>smart00284 OLF Olfactomedin-like domains.
Probab=40.91 E-value=2.7e+02 Score=24.93 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=17.8
Q ss_pred CCcEEEEECC-CcEEEEEcCCCeEE
Q psy4771 122 NGALHVADAY-FGLYKVNVTTGQTE 145 (337)
Q Consensus 122 ~G~lyVad~~-~gv~~vd~~~g~~~ 145 (337)
+|.||.--.. ..|.++|..++.+.
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~ 107 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQ 107 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEE
Confidence 4788886533 35999999888765
No 336
>KOG1063|consensus
Probab=40.77 E-value=2.6e+02 Score=28.67 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=35.5
Q ss_pred eEEEEecCcEEEEEeCCc----eeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc
Q psy4771 74 DLYMGVDGGHILKLSGGK----LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG 133 (337)
Q Consensus 74 ~ly~d~~~g~I~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g 133 (337)
.|.+...+..++.|.+++ +.....+|+.. +..+.=.|-.+.++++.+++.++.|
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g------g~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVG------GSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeeccc------ccccceeeEEEcCCCCEEEEecccC
Confidence 455777888888887732 44455566432 1112245677889999999998876
No 337
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=40.42 E-value=1.3e+02 Score=26.79 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=11.1
Q ss_pred ccEEEcCCCcEEEE
Q psy4771 195 NSVTVDSDGMVYWS 208 (337)
Q Consensus 195 n~v~vd~~G~lyvt 208 (337)
.++.|++||.|+..
T Consensus 147 ~~~~i~~dG~i~~~ 160 (262)
T PRK12691 147 TSITINASGQVSAT 160 (262)
T ss_pred ceEEECCCCEEEEE
Confidence 47899999998753
No 338
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=39.14 E-value=1.7e+02 Score=25.78 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=12.8
Q ss_pred CCcceEEECCCCcEEEEE
Q psy4771 112 GRPLGIKFDKNGALHVAD 129 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad 129 (337)
++|..++++.+|-+.|.+
T Consensus 76 g~~lDlAI~G~GFF~V~~ 93 (238)
T PRK12690 76 GGQFDFAIEGEGFFMVET 93 (238)
T ss_pred CCceeEEECCCcEEEEEc
Confidence 678899998777555543
No 339
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=39.07 E-value=2.2e+02 Score=25.37 Aligned_cols=15 Identities=40% Similarity=0.541 Sum_probs=11.7
Q ss_pred ccEEEcCCCcEEEEc
Q psy4771 195 NSVTVDSDGMVYWSD 209 (337)
Q Consensus 195 n~v~vd~~G~lyvtd 209 (337)
..+.|++||.|+..+
T Consensus 152 ~~~~i~~dG~i~~~~ 166 (260)
T PRK12817 152 NNFTVDEDGGISVKN 166 (260)
T ss_pred CceEECCCCeEEEec
Confidence 478999999987644
No 340
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=39.04 E-value=77 Score=18.18 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=20.9
Q ss_pred ccccceeeEEEccCCCEEEEEeCCCCEEEEEE
Q psy4771 244 ANLHFANGVELSADESFVIVAETMSSRVHRYY 275 (337)
Q Consensus 244 ~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~ 275 (337)
......+.|+++|+++.|..+. ..+.|..++
T Consensus 9 ~h~~~i~~i~~~~~~~~~~s~~-~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGNFLASGS-SDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred CCCCcEEEEEEecccccceeeC-CCCEEEEEC
Confidence 3445678999999987555555 456776654
No 341
>KOG2314|consensus
Probab=38.95 E-value=2.1e+02 Score=28.62 Aligned_cols=64 Identities=22% Similarity=0.214 Sum_probs=43.0
Q ss_pred cceeeEEEccCCCEEEEEeCC--CCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecCC
Q psy4771 247 HFANGVELSADESFVIVAETM--SSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 247 ~~p~gia~~~dg~~lyva~~~--~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
.+.|-+-++|.|+++.++.-. .+.+.-||.+-... .............+.-|+.|++.|++...
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~---k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL---KDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred cccceEEEcCCCcEEEEEEecccccceEEEecchhhh---hhccCccccccccceECCCCCEEEEeeeh
Confidence 578999999999999998876 56677777652111 11111011125788999999998888665
No 342
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=38.65 E-value=2.8e+02 Score=29.51 Aligned_cols=87 Identities=16% Similarity=0.153 Sum_probs=49.3
Q ss_pred CCccEEEEcCCCCeeEEE-eccccceeeEEEccCCCEEEE-Ee--C--CCCEEEEEEeeCCCCCceeeeecCCCCCCCce
Q psy4771 225 GSGRLIQYNPKTKKNKVL-IANLHFANGVELSADESFVIV-AE--T--MSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNV 298 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~-~~~~~~p~gia~~~dg~~lyv-a~--~--~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi 298 (337)
..|+|...|-++...+.+ ...-...--=++||||++|-. +. . ++..|++-+++....+-.+.-.++ ...| .-
T Consensus 327 ~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~-aaip-rw 404 (912)
T TIGR02171 327 VTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN-AAIP-RW 404 (912)
T ss_pred CCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc-cccc-ce
Confidence 345777777776555544 332222223468999998855 32 2 345688888875444444443432 2233 34
Q ss_pred eECCCCC---EEEEecCC
Q psy4771 299 KRDSKGN---FLVSLVCP 313 (337)
Q Consensus 299 ~~d~dG~---l~va~~~~ 313 (337)
++-+.|. +||+....
T Consensus 405 rv~e~gdt~ivyv~~a~n 422 (912)
T TIGR02171 405 RVLENGDTVIVYVSDASN 422 (912)
T ss_pred EecCCCCeEEEEEcCCCC
Confidence 5555664 78887666
No 343
>KOG1445|consensus
Probab=38.23 E-value=4.6e+02 Score=26.86 Aligned_cols=76 Identities=13% Similarity=-0.024 Sum_probs=42.5
Q ss_pred EccCCCEEEEEeCCCCEEEEEEeeCCC--CCceeeeecCCCCCCCceeECCCCCEEEEecCC-----CCCchhhccccCC
Q psy4771 254 LSADESFVIVAETMSSRVHRYYLKGPK--QGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCP-----VEQPSEQAGNIRD 326 (337)
Q Consensus 254 ~~~dg~~lyva~~~~~~I~~~~~~g~~--~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~~-----~~~p~~~~~~~~~ 326 (337)
.+.|-+.|+++-.+..+|..|.+-... +-....|. .|-.--||++-..-++=|....- -.+-.++.+..+.
T Consensus 821 YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~--sp~~hqGl~fl~K~~CdV~~VEf~~c~RL~~~~lEpitFrv 898 (1012)
T KOG1445|consen 821 YDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFM--SPVGHQGLAFLQKLKCDVMAVEFQVCWRLSDKNLEPITFRV 898 (1012)
T ss_pred ccCCCceEEEecCCCceEEEEEecCCCceeeeccccc--CCCcccceeeecccccceeeeehhhhhhhccCcccceeeec
Confidence 467878899999999999999974321 00011111 11113467766655444444322 2334466667777
Q ss_pred Ccccc
Q psy4771 327 PAGAQ 331 (337)
Q Consensus 327 p~~~~ 331 (337)
|++++
T Consensus 899 PRikk 903 (1012)
T KOG1445|consen 899 PRIKK 903 (1012)
T ss_pred chhhh
Confidence 77654
No 344
>KOG4283|consensus
Probab=38.15 E-value=3.2e+02 Score=25.09 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=19.4
Q ss_pred ceeeEEEccCCCEEEEEeCCCCEEEEEEe
Q psy4771 248 FANGVELSADESFVIVAETMSSRVHRYYL 276 (337)
Q Consensus 248 ~p~gia~~~dg~~lyva~~~~~~I~~~~~ 276 (337)
.-||+|++.|+++++.+-+ .+|+.....
T Consensus 248 kvngla~tSd~~~l~~~gt-d~r~r~wn~ 275 (397)
T KOG4283|consen 248 KVNGLAWTSDARYLASCGT-DDRIRVWNM 275 (397)
T ss_pred eeeeeeecccchhhhhccC-ccceEEeec
Confidence 4689999999987766554 355555544
No 345
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=38.04 E-value=1.8e+02 Score=25.90 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=12.3
Q ss_pred CCcceEEECCCCcEEEE
Q psy4771 112 GRPLGIKFDKNGALHVA 128 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVa 128 (337)
++|..++++.+|-+.|.
T Consensus 90 ~~~lD~Ai~G~GfF~v~ 106 (261)
T PRK12693 90 GNSLDVAIEGQGFFQVQ 106 (261)
T ss_pred CCcceEEECCCcEEEEE
Confidence 67889999877754444
No 346
>KOG0307|consensus
Probab=37.96 E-value=2e+02 Score=30.94 Aligned_cols=62 Identities=19% Similarity=0.294 Sum_probs=37.4
Q ss_pred CeEEEEecCcEEEEEeCCce---eEEEecCccccCccccCccCCcceEEECCCCc-EEEEECCCc-EEEEEcC
Q psy4771 73 GDLYMGVDGGHILKLSGGKL---VPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA-LHVADAYFG-LYKVNVT 140 (337)
Q Consensus 73 g~ly~d~~~g~I~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~-lyVad~~~g-v~~vd~~ 140 (337)
|.|-.+..||.|.-|++.+. ..+..+.. | ...-+...|+-|++.+. +..+.+..| |+..|..
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~-~-----~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln 147 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLAT-K-----SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN 147 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhh-h-----cccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence 45667788999999987432 11111111 0 12335678999999875 555544455 8888875
No 347
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=37.70 E-value=83 Score=19.48 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=19.9
Q ss_pred cceEEECCCCcEEEEECCCcEEEEEcC
Q psy4771 114 PLGIKFDKNGALHVADAYFGLYKVNVT 140 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~gv~~vd~~ 140 (337)
..++++.. +.+||++...|+..+|..
T Consensus 4 a~~v~v~g-~yaYva~~~~Gl~IvDIS 29 (42)
T PF08309_consen 4 ARDVAVSG-NYAYVADGNNGLVIVDIS 29 (42)
T ss_pred EEEEEEEC-CEEEEEeCCCCEEEEECC
Confidence 45677743 489999988899999865
No 348
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=36.38 E-value=49 Score=21.46 Aligned_cols=17 Identities=12% Similarity=0.020 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhcCC
Q psy4771 7 FFISVVVGIVAITFYPG 23 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (337)
++-|.++++++.-++++
T Consensus 4 ~lkf~lv~imlaqllsc 20 (60)
T PF10913_consen 4 SLKFLLVLIMLAQLLSC 20 (60)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 33343333333334444
No 349
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=35.10 E-value=32 Score=25.64 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy4771 6 NFFISVVVGIVAITFYP 22 (337)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (337)
|.+|++.|+|+++++++
T Consensus 4 K~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLIS 20 (95)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44555555544444444
No 350
>KOG4532|consensus
Probab=35.06 E-value=3.5e+02 Score=24.56 Aligned_cols=29 Identities=31% Similarity=0.291 Sum_probs=22.7
Q ss_pred eeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 249 ANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 249 p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
-|.+++++|++ +.++-...++|.+|.++.
T Consensus 161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~ 189 (344)
T KOG4532|consen 161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDD 189 (344)
T ss_pred eeeeEEcCCCc-eEEEecCCCcceEEEeCC
Confidence 57899999997 444555578999999975
No 351
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=35.01 E-value=3.5e+02 Score=24.59 Aligned_cols=27 Identities=26% Similarity=0.227 Sum_probs=17.7
Q ss_pred CCcEEEEECC------CcEEEEEcCCCeEEEEe
Q psy4771 122 NGALHVADAY------FGLYKVNVTTGQTEQLI 148 (337)
Q Consensus 122 ~G~lyVad~~------~gv~~vd~~~g~~~~l~ 148 (337)
++.|||.-.. ..++++|+.+.+-+.+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 155 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELP 155 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECC
Confidence 5689998432 23788888776655543
No 352
>KOG0284|consensus
Probab=33.87 E-value=4.3e+02 Score=25.32 Aligned_cols=49 Identities=6% Similarity=0.179 Sum_probs=30.5
Q ss_pred cEEEEcCCCCeeEE-EeccccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 228 RLIQYNPKTKKNKV-LIANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 228 ~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
-|-.+||++|+... +...-..--++.|.++++ .+.+-+....+.+||+.
T Consensus 245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIR 294 (464)
T ss_pred eeEeecCCCcchhhhhhhccceEEEEEEcCCCC-eeEEccCCceEEEEehh
Confidence 56667888775422 222233456788888885 45555556677788875
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=33.45 E-value=3.7e+02 Score=24.40 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=38.3
Q ss_pred cEEEeeCCeEEEEecCcEEEE--EeCCc-eeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcE--EEEEcC
Q psy4771 66 EAVVKHKGDLYMGVDGGHILK--LSGGK-LVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGL--YKVNVT 140 (337)
Q Consensus 66 ~~i~~~~g~ly~d~~~g~I~~--~~~~~-~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv--~~vd~~ 140 (337)
.+|..-++.|.+..+ ++|+. ++..+ +.....+ ........+..-.+ .++|+|..+++ ++++.+
T Consensus 92 ~ai~~~~~~lv~~~g-~~l~v~~l~~~~~l~~~~~~----------~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 92 TAICSFNGRLVVAVG-NKLYVYDLDNSKTLLKKAFY----------DSPFYITSLSVFKN-YILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp EEEEEETTEEEEEET-TEEEEEEEETTSSEEEEEEE-----------BSSSEEEEEEETT-EEEEEESSSSEEEEEEETT
T ss_pred eEhhhhCCEEEEeec-CEEEEEEccCcccchhhhee----------cceEEEEEEecccc-EEEEEEcccCEEEEEEEcc
Confidence 344444666655554 43444 44444 4433322 11123455665433 89999988884 456775
Q ss_pred CCeEEEEec
Q psy4771 141 TGQTEQLIS 149 (337)
Q Consensus 141 ~g~~~~l~~ 149 (337)
..++..++.
T Consensus 160 ~~~l~~va~ 168 (321)
T PF03178_consen 160 NNKLILVAR 168 (321)
T ss_dssp TE-EEEEEE
T ss_pred CCEEEEEEe
Confidence 555666664
No 354
>KOG0650|consensus
Probab=33.44 E-value=5.3e+02 Score=26.16 Aligned_cols=59 Identities=17% Similarity=0.268 Sum_probs=37.4
Q ss_pred ceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCC--CCCceeECCCC-CEEEEecCC
Q psy4771 248 FANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPG--LPDNVKRDSKG-NFLVSLVCP 313 (337)
Q Consensus 248 ~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g--~Pdgi~~d~dG-~l~va~~~~ 313 (337)
.+..+.|.|---+++||. .+.|..|++....+ .-.-++| ..+.|++++.| ++.++....
T Consensus 568 ~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqel-----vKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 568 LVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQEL-----VKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred ceeEEEecCCCceEEEEe--ccceEEEehhHHHH-----HHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 577888998888899988 55777788743211 1111122 35677787776 476666655
No 355
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=33.37 E-value=3.7e+02 Score=24.41 Aligned_cols=28 Identities=18% Similarity=0.055 Sum_probs=18.0
Q ss_pred CCCcEEEEECCC-----cEEEEEcCCCeEEEEe
Q psy4771 121 KNGALHVADAYF-----GLYKVNVTTGQTEQLI 148 (337)
Q Consensus 121 ~~G~lyVad~~~-----gv~~vd~~~g~~~~l~ 148 (337)
-++.|||.-... .+.++|+++.+-+.+.
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred ECCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence 356899985322 2567888877665554
No 356
>KOG0264|consensus
Probab=33.30 E-value=4.5e+02 Score=25.29 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=35.5
Q ss_pred CccEEEEcCCCC--eeEEE-eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 226 SGRLIQYNPKTK--KNKVL-IANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 226 ~G~v~~~d~~~~--~~~~~-~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
+++|...|..++ +.... ...-.--|.++|+|-+.+|+.+-+..++|..+|+..
T Consensus 249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN 304 (422)
T ss_pred CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence 346666666532 11111 122334588999998888999988889999999864
No 357
>KOG3567|consensus
Probab=33.28 E-value=53 Score=31.73 Aligned_cols=50 Identities=14% Similarity=0.237 Sum_probs=36.5
Q ss_pred cEEEEcCCCCeeEEE--eccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 228 RLIQYNPKTKKNKVL--IANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~--~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
++.++++.+...... .+.+..|.|+-++.|| +.|+++..++.+.+....+
T Consensus 446 ~ilvi~~~n~~~l~~~g~~~fylphgl~~dkdg-f~~~tdvash~v~k~k~~~ 497 (501)
T KOG3567|consen 446 TILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDG-FYWVTDVASHQVFKLKPNN 497 (501)
T ss_pred eEEEEcCcchhhhhhccCCceecCCcceecCCC-cEEeecccchhhhhccccc
Confidence 677887763222111 1347789999999999 7999999999888877654
No 358
>KOG4328|consensus
Probab=33.22 E-value=3.9e+02 Score=25.97 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=22.6
Q ss_pred CCcceEEECCCC--cEEEEECCCc-EEEEEcCCCeEEEEe
Q psy4771 112 GRPLGIKFDKNG--ALHVADAYFG-LYKVNVTTGQTEQLI 148 (337)
Q Consensus 112 ~~P~Gl~~d~~G--~lyVad~~~g-v~~vd~~~g~~~~l~ 148 (337)
+...+|.|.|.. ++|-+ ++.| |...|.+++....+.
T Consensus 235 ~~Vs~l~F~P~n~s~i~ss-SyDGtiR~~D~~~~i~e~v~ 273 (498)
T KOG4328|consen 235 GPVSGLKFSPANTSQIYSS-SYDGTIRLQDFEGNISEEVL 273 (498)
T ss_pred ccccceEecCCChhheeee-ccCceeeeeeecchhhHHHh
Confidence 335688888876 55555 4556 777777765544444
No 359
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=32.99 E-value=2.2e+02 Score=25.31 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=12.2
Q ss_pred CCcceEEECCCCcEEEE
Q psy4771 112 GRPLGIKFDKNGALHVA 128 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVa 128 (337)
++|..++++.+|-+-|.
T Consensus 82 g~~lDlAI~G~GFF~V~ 98 (253)
T PRK12689 82 KNPLDVAIDGDAFLAVQ 98 (253)
T ss_pred CCceeEEECCCcEEEEE
Confidence 67889999877744443
No 360
>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional
Probab=32.46 E-value=2.2e+02 Score=25.44 Aligned_cols=17 Identities=35% Similarity=0.761 Sum_probs=12.4
Q ss_pred CCcceEEECCCCcEEEE
Q psy4771 112 GRPLGIKFDKNGALHVA 128 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVa 128 (337)
++|..++++.+|-+-|.
T Consensus 89 g~~lDlAI~G~GfF~V~ 105 (263)
T PRK12636 89 GRPLDLAISGDGFFRVG 105 (263)
T ss_pred CCceeEEEcCCcEEEEE
Confidence 67899999877754444
No 361
>KOG0285|consensus
Probab=32.10 E-value=4.4e+02 Score=24.89 Aligned_cols=113 Identities=13% Similarity=0.152 Sum_probs=66.8
Q ss_pred cCCcceEEECCCCcEEEEECCCc-EEEEEcCCCeEEEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCC
Q psy4771 111 CGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGA 189 (337)
Q Consensus 111 ~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~~~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~ 189 (337)
.+-...+++||-...+.+.+..+ +-.+|..+|+++.-.. |
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt------G--------------------------------- 191 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT------G--------------------------------- 191 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec------c---------------------------------
Confidence 34456899999855555554445 6677988888765442 1
Q ss_pred CCCCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCee-EEEeccccceeeEEEccCCCEEEEEeCCC
Q psy4771 190 KPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN-KVLIANLHFANGVELSADESFVIVAETMS 268 (337)
Q Consensus 190 ~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~-~~~~~~~~~p~gia~~~dg~~lyva~~~~ 268 (337)
-.....+++|++..-..|+..- ++.|--+|....++ +-....+..-.++++.|--+ +.++....
T Consensus 192 hi~~vr~vavS~rHpYlFs~ge--------------dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grD 256 (460)
T KOG0285|consen 192 HIETVRGVAVSKRHPYLFSAGE--------------DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRD 256 (460)
T ss_pred hhheeeeeeecccCceEEEecC--------------CCeeEEEechhhhhHHHhccccceeEEEeccccce-eEEecCCc
Confidence 1234678888876543333322 23555666655443 22234466677788887654 55655555
Q ss_pred CEEEEEEee
Q psy4771 269 SRVHRYYLK 277 (337)
Q Consensus 269 ~~I~~~~~~ 277 (337)
..+.+.|+.
T Consensus 257 st~RvWDiR 265 (460)
T KOG0285|consen 257 STIRVWDIR 265 (460)
T ss_pred ceEEEeeec
Confidence 555555554
No 362
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=31.83 E-value=2.5e+02 Score=25.03 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=10.9
Q ss_pred ccEEEcCCCcEEEE
Q psy4771 195 NSVTVDSDGMVYWS 208 (337)
Q Consensus 195 n~v~vd~~G~lyvt 208 (337)
..+.|++||.|+..
T Consensus 148 ~~v~I~~dG~I~~~ 161 (257)
T PRK12819 148 AKVAVQADGTLYDA 161 (257)
T ss_pred CcEEEcCCCEEEEE
Confidence 36889999988754
No 363
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=31.39 E-value=2.3e+02 Score=25.39 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=11.2
Q ss_pred ccEEEcCCCcEEEE
Q psy4771 195 NSVTVDSDGMVYWS 208 (337)
Q Consensus 195 n~v~vd~~G~lyvt 208 (337)
..+.|++||.|+..
T Consensus 147 ~~i~I~~dG~I~~~ 160 (262)
T PRK12692 147 TQVTINESGQVFAK 160 (262)
T ss_pred cceEECCCCEEEEe
Confidence 47999999998753
No 364
>KOG0301|consensus
Probab=31.26 E-value=6e+02 Score=26.15 Aligned_cols=66 Identities=9% Similarity=0.071 Sum_probs=39.9
Q ss_pred eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCCeEEEE
Q psy4771 71 HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQL 147 (337)
Q Consensus 71 ~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l 147 (337)
.++.+.++..+..|.-|..++... .|. .......|+++-+++.+.=|+...-|...+.+++.+...
T Consensus 150 ~e~~~vTgsaDKtIklWk~~~~l~--tf~---------gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~ 215 (745)
T KOG0301|consen 150 PENTYVTGSADKTIKLWKGGTLLK--TFS---------GHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEM 215 (745)
T ss_pred CCCcEEeccCcceeeeccCCchhh--hhc---------cchhheeeeEEecCCCeEeecCCceEEEEeccCceeeee
Confidence 345444788787777676554321 121 122457899999887787776433477778765544444
No 365
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=31.20 E-value=2.7e+02 Score=24.77 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=11.2
Q ss_pred ccEEEcCCCcEEEE
Q psy4771 195 NSVTVDSDGMVYWS 208 (337)
Q Consensus 195 n~v~vd~~G~lyvt 208 (337)
..+.|++||.|+..
T Consensus 131 ~~i~I~~dG~I~~~ 144 (252)
T PRK12641 131 INLKISSNGVITSI 144 (252)
T ss_pred CcEEECCCceEEEE
Confidence 37899999998765
No 366
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=31.08 E-value=1.2e+02 Score=19.22 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=21.6
Q ss_pred eeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 249 ANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 249 p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
-.-++++|..+.|.+ -+.+++|..|++++.
T Consensus 14 v~~~~w~P~mdLiA~-~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 14 VSCMSWCPTMDLIAL-GTEDGEVLVYRLNWQ 43 (47)
T ss_pred EEEEEECCCCCEEEE-EECCCeEEEEECCCc
Confidence 346889999874444 445788999998654
No 367
>KOG1272|consensus
Probab=30.89 E-value=3.2e+02 Score=26.64 Aligned_cols=33 Identities=30% Similarity=0.229 Sum_probs=20.3
Q ss_pred cCCcceEEECCCCcEEEEECCCc-EEEEEcCCCe
Q psy4771 111 CGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQ 143 (337)
Q Consensus 111 ~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g~ 143 (337)
+.+..-|.|-|.--|.++.+..| +...|..+|+
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk 242 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK 242 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhh
Confidence 34455677777766677655556 5556666554
No 368
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=30.25 E-value=80 Score=17.97 Aligned_cols=18 Identities=17% Similarity=0.512 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy4771 5 RNFFISVVVGIVAITFYP 22 (337)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (337)
|+.++++++++++++++|
T Consensus 11 r~~l~~l~~v~l~ll~~P 28 (30)
T PF08525_consen 11 RRALIALSAVVLVLLLWP 28 (30)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 666677666666677776
No 369
>COG3470 Tpd Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]
Probab=29.68 E-value=71 Score=26.06 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=6.9
Q ss_pred CceeeeeCCCCCC
Q psy4771 29 DFTAFEVAPPRPL 41 (337)
Q Consensus 29 ~~~~~~~~~~~~~ 41 (337)
.+..+-+..|..+
T Consensus 26 ~~~E~Pigep~ev 38 (179)
T COG3470 26 AFKEVPIGEPIEV 38 (179)
T ss_pred ccccccCCCCccc
Confidence 4555555555543
No 370
>KOG1445|consensus
Probab=28.90 E-value=3.6e+02 Score=27.56 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=38.4
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecc----ccceeeEEEccCCCEEEEEeCCC-
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN----LHFANGVELSADESFVIVAETMS- 268 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~----~~~p~gia~~~dg~~lyva~~~~- 268 (337)
.-++|.+++|+...| .-.+|+|.+|+|..++.. +.++ .....-|.|.=||+.+.|+-..+
T Consensus 723 If~~AWSpdGr~~At--------------VcKDg~~rVy~Prs~e~p-v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 723 IFGIAWSPDGRRIAT--------------VCKDGTLRVYEPRSREQP-VYEGKGPVGTRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred eeEEEECCCCcceee--------------eecCceEEEeCCCCCCCc-cccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence 346666666654322 234679999999877542 2222 12233466666777666665443
Q ss_pred --CEEEEEEe
Q psy4771 269 --SRVHRYYL 276 (337)
Q Consensus 269 --~~I~~~~~ 276 (337)
..|..|+.
T Consensus 788 SeRQv~~Y~A 797 (1012)
T KOG1445|consen 788 SERQVQMYDA 797 (1012)
T ss_pred chhhhhhhhh
Confidence 34555554
No 371
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.74 E-value=6.1e+02 Score=25.41 Aligned_cols=51 Identities=12% Similarity=0.251 Sum_probs=38.0
Q ss_pred CCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEee
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~ 277 (337)
.+|.|..||...+.. ........|+-+++.|+|. +++.-..++.|+.||..
T Consensus 279 ~DgSiiLyD~~~~~t-~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 279 EDGSIILYDTTRGVT-LLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCeEEEEEcCCCee-eeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEee
Confidence 467899999876544 3444456799999999996 55555567899999985
No 372
>KOG1310|consensus
Probab=28.40 E-value=5.9e+02 Score=25.61 Aligned_cols=39 Identities=10% Similarity=0.033 Sum_probs=27.3
Q ss_pred CccCCcceEEECCCCcEEEEECC-CcEEEEEcCCCeEEEE
Q psy4771 109 QQCGRPLGIKFDKNGALHVADAY-FGLYKVNVTTGQTEQL 147 (337)
Q Consensus 109 ~~~~~P~Gl~~d~~G~lyVad~~-~gv~~vd~~~g~~~~l 147 (337)
...+..+.+.+..+|.+.++-+. ..+...|+-..+....
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs 87 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS 87 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeee
Confidence 34467889999999999988654 4577777764444333
No 373
>KOG1963|consensus
Probab=27.99 E-value=7.3e+02 Score=26.08 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=44.7
Q ss_pred EEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCceeeeecCCCCCCCceeECCCCCEEEEecC
Q psy4771 240 KVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 240 ~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d~dG~l~va~~~ 312 (337)
+.+.-+...-+++++++||..||- .+.-.+++.+-.+.. . +.|...+.+-.-++.+.+|+.+|.-...
T Consensus 245 t~lHWH~~~V~~L~fS~~G~~LlS--GG~E~VLv~Wq~~T~--~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDGAYLLS--GGREGVLVLWQLETG--K-KQFLPRLGSPILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred eEEEecccccceeEEecCCceEee--cccceEEEEEeecCC--C-cccccccCCeeEEEEEcCCCCeEEEEec
Confidence 334444456789999999976664 445678887765432 2 4455545555678889999987765543
No 374
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=27.92 E-value=2.7e+02 Score=24.82 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=12.8
Q ss_pred CCcceEEECCCCcEEEEE
Q psy4771 112 GRPLGIKFDKNGALHVAD 129 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad 129 (337)
++|..+++..+|-+-|.+
T Consensus 90 g~~lDlAI~G~GFF~V~~ 107 (256)
T PRK12818 90 DKPTDFAIQGRGFFTVER 107 (256)
T ss_pred CCcceEEECCCceEEEEc
Confidence 678899998777555543
No 375
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=27.65 E-value=3.1e+02 Score=24.29 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=11.2
Q ss_pred ccEEEcCCCcEEEE
Q psy4771 195 NSVTVDSDGMVYWS 208 (337)
Q Consensus 195 n~v~vd~~G~lyvt 208 (337)
..+.|++||.|+..
T Consensus 134 ~~i~I~~dG~I~~~ 147 (246)
T PRK12640 134 AKITIGADGTISAL 147 (246)
T ss_pred CCEEECCCCEEEEe
Confidence 47899999998764
No 376
>KOG0307|consensus
Probab=27.61 E-value=3.8e+02 Score=29.02 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=39.9
Q ss_pred CCccEEEEcCCCCeeE-EEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCC
Q psy4771 225 GSGRLIQYNPKTKKNK-VLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~ 279 (337)
.+++++..++.++++. .+.....+-..+.|.|..-.++.+.+..++|..|.+.+.
T Consensus 274 kD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 274 KDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 4568999998887642 122233455678888877678888888999999999764
No 377
>KOG0641|consensus
Probab=27.34 E-value=4.3e+02 Score=23.23 Aligned_cols=32 Identities=13% Similarity=0.272 Sum_probs=24.3
Q ss_pred eeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCC
Q psy4771 249 ANGVELSADESFVIVAETMSSRVHRYYLKGPKQ 281 (337)
Q Consensus 249 p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~ 281 (337)
...+|++|.|+ |+++-.....-.-|++.|++.
T Consensus 234 vaav~vdpsgr-ll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 234 VAAVAVDPSGR-LLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred eEEEEECCCcc-eeeeccCCCceEEEEeeCCce
Confidence 46789999995 888777777777788877643
No 378
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.13 E-value=4e+02 Score=24.07 Aligned_cols=80 Identities=15% Similarity=0.109 Sum_probs=48.4
Q ss_pred CCCCccEEEcCCCc--EEEEcCCCCccCceee-eeecCCccEEEEcCCCCeeEEEecc---------ccceeeEEEccCC
Q psy4771 191 PQIPNSVTVDSDGM--VYWSDSSTKYKSGLFE-GLTSGSGRLIQYNPKTKKNKVLIAN---------LHFANGVELSADE 258 (337)
Q Consensus 191 ~~~pn~v~vd~~G~--lyvtd~~~~~~~~~~~-~~~~~~G~v~~~d~~~~~~~~~~~~---------~~~p~gia~~~dg 258 (337)
+....++.+-++|. +-++|.+. |... +..+.+|++.-+. +++++.+.+- -.-..|+|+- ||
T Consensus 73 fgalSairf~~dG~~fiav~DtG~----wfeg~i~rDa~grl~Gl~--dgr~~pm~d~~Gqpi~~K~e~DaEGLAvr-dG 145 (340)
T COG4246 73 FGALSAIRFLPDGSQFIAVTDTGH----WFEGKIQRDANGRLAGLT--DGRLTPMRDLDGQPIQEKWEVDAEGLAVR-DG 145 (340)
T ss_pred ccchheeEeccCCceeEEEeecCc----eEEEEEEeccCCCccccc--ccceeecccCCCCCCcchhccccccceEe-cC
Confidence 55678899999984 66777663 2221 1234455544332 3444433321 1135789987 77
Q ss_pred CEEEEEeCCCCEEEEEEeeC
Q psy4771 259 SFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 259 ~~lyva~~~~~~I~~~~~~g 278 (337)
+ .+|+=..++||+.|...+
T Consensus 146 ~-~~VsfEr~hRI~iyp~~p 164 (340)
T COG4246 146 D-ALVSFERDHRIWIYPVPP 164 (340)
T ss_pred c-eEEEeeccceeEEeccCC
Confidence 5 677777789999998865
No 379
>KOG0274|consensus
Probab=27.12 E-value=6.5e+02 Score=25.22 Aligned_cols=151 Identities=14% Similarity=0.085 Sum_probs=0.0
Q ss_pred EEEeeCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCcEEEEEcCCC--eE
Q psy4771 67 AVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTG--QT 144 (337)
Q Consensus 67 ~i~~~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~~g--~~ 144 (337)
.+...++.++++..++.|..|+....+.+..+. ..-++..++.++....+|=+.....|...|..++ -+
T Consensus 336 ~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~---------gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~ 406 (537)
T KOG0274|consen 336 CVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLS---------GHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCI 406 (537)
T ss_pred EEEecCCEEEEEecCceEEEEEhhhceeeeeec---------CCcceEEEEEecCcceEEeeeeccceEeecCCchhhhh
Q ss_pred EEEeccccccCCCCCCCCCceeeCCCCCcccccceeeeccccCCCCCCCCccEEEcCCCcEEEEcCCCCccCceeeeeec
Q psy4771 145 EQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTS 224 (337)
Q Consensus 145 ~~l~~~~~~~~g~~~~~P~~v~~~~~g~~~~~~~v~~~~~~~~~~~~~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~ 224 (337)
..+.. .....+++... ++++++...
T Consensus 407 ~tl~~----------------------------------------h~~~v~~l~~~--~~~Lvs~~a------------- 431 (537)
T KOG0274|consen 407 HTLQG----------------------------------------HTSLVSSLLLR--DNFLVSSSA------------- 431 (537)
T ss_pred hhhcC----------------------------------------Ccccccccccc--cceeEeccc-------------
Q ss_pred CCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeCCCCCc
Q psy4771 225 GSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGK 283 (337)
Q Consensus 225 ~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g~~~~~ 283 (337)
+|.|..+|..+++......+. .-.++.+-..++...++....+.+..+++.......
T Consensus 432 -D~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 432 -DGTIKLWDAEEGECLRTLEGR-HVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred -cccEEEeecccCceeeeeccC-CcccEEEeecCcceEEEEecCCeeEEEecccCchhh
No 380
>KOG0321|consensus
Probab=26.51 E-value=7.1e+02 Score=25.45 Aligned_cols=77 Identities=13% Similarity=0.047 Sum_probs=40.6
Q ss_pred EEe-eCCeEE-EEecCcEEEEEeCCceeEEEecCccccCccc--cCccCCcceEEECCCC-cEEEEECCCcEEEEEcCCC
Q psy4771 68 VVK-HKGDLY-MGVDGGHILKLSGGKLVPVVKLGKDCYGFKY--EQQCGRPLGIKFDKNG-ALHVADAYFGLYKVNVTTG 142 (337)
Q Consensus 68 i~~-~~g~ly-~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~P~Gl~~d~~G-~lyVad~~~gv~~vd~~~g 142 (337)
+.+ ++.+|- ++..|+.|-+||.-+......-+........ ....-.-..+..|..| +||+.-..+.|+.++..+-
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 344 566676 5556888888886332221111000000000 0111112358889998 7887766677999987644
Q ss_pred eE
Q psy4771 143 QT 144 (337)
Q Consensus 143 ~~ 144 (337)
.+
T Consensus 304 s~ 305 (720)
T KOG0321|consen 304 SI 305 (720)
T ss_pred Cc
Confidence 33
No 381
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=25.95 E-value=2.1e+02 Score=26.65 Aligned_cols=85 Identities=20% Similarity=0.226 Sum_probs=37.9
Q ss_pred CccEEEEcCCC-CeeEEEec------cccceeeEEEccCC--CEEEEEeCCCCEEEEEEeeCCCCCc--eeeeecC-CC-
Q psy4771 226 SGRLIQYNPKT-KKNKVLIA------NLHFANGVELSADE--SFVIVAETMSSRVHRYYLKGPKQGK--SEVFIDG-LP- 292 (337)
Q Consensus 226 ~G~v~~~d~~~-~~~~~~~~------~~~~p~gia~~~dg--~~lyva~~~~~~I~~~~~~g~~~~~--~~~~~~~-~~- 292 (337)
...||.+|.++ |+...-.. ++..|..+-.+.|| +++|+.|.. +.|+||++.+..... ......+ .|
T Consensus 180 ~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl~-GnlwR~dl~~~~~~~~~~~~~~~g~~PI 258 (335)
T PF05567_consen 180 GAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDLG-GNLWRFDLSSANPSSWSVRTIFSGTQPI 258 (335)
T ss_dssp -EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEETT-SEEEEEE--TTSTT-GG-EESGGG----
T ss_pred CcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcCC-CcEEEEECCCCCcccceeeecccCcCCe
Confidence 45788888887 65432221 23333333333444 378999974 899999997642222 1111121 11
Q ss_pred -CCCCceeECCCCCEEEEecCC
Q psy4771 293 -GLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 293 -g~Pdgi~~d~dG~l~va~~~~ 313 (337)
..| .+..+++++ ||-...+
T Consensus 259 t~aP-~v~~~~~~~-~V~fGTG 278 (335)
T PF05567_consen 259 TAAP-AVVRDPDGR-WVFFGTG 278 (335)
T ss_dssp -S---EEEE-TTSS-EEEEE--
T ss_pred Eecc-eEEecCCCC-EEEEEeC
Confidence 123 355666666 6655555
No 382
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=25.85 E-value=1.5e+02 Score=19.66 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=18.1
Q ss_pred eeeEEEccCCCEEEEEeCC------CCEEEEEEeeCC
Q psy4771 249 ANGVELSADESFVIVAETM------SSRVHRYYLKGP 279 (337)
Q Consensus 249 p~gia~~~dg~~lyva~~~------~~~I~~~~~~g~ 279 (337)
...+++.+||+.|.+.... ...|.|+..+|.
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGs 39 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGS 39 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCC
Confidence 4678899999744443321 223666665553
No 383
>KOG4532|consensus
Probab=25.25 E-value=5.2e+02 Score=23.48 Aligned_cols=44 Identities=9% Similarity=0.112 Sum_probs=24.4
Q ss_pred cCCccEEEEcCCCCeeEEE---eccc------cceeeEEEccCCCEEEEEeCC
Q psy4771 224 SGSGRLIQYNPKTKKNKVL---IANL------HFANGVELSADESFVIVAETM 267 (337)
Q Consensus 224 ~~~G~v~~~d~~~~~~~~~---~~~~------~~p~gia~~~dg~~lyva~~~ 267 (337)
+..+++..+|..++.--.+ .+.. ..--|-+++.+++.+||+...
T Consensus 271 Ehfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 271 EHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred cCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 3445777777665532111 1111 113466777788888887754
No 384
>KOG1645|consensus
Probab=25.01 E-value=3.5e+02 Score=25.89 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=30.3
Q ss_pred cEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEEeeC
Q psy4771 228 RLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~~~g 278 (337)
.|-.+|..+..+.....-...+..++|+-|+.+...+--.++.|+.||+.-
T Consensus 217 kiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 217 KIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred eEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 444455444433222223356788999977665444444578899999853
No 385
>PF12354 Internalin_N: Bacterial adhesion/invasion protein N terminal; PDB: 2OMT_A 1H6U_A 3RFS_A 3RFJ_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=24.91 E-value=17 Score=24.27 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=2.8
Q ss_pred cCCCCCCCCceeeeeCCCCC
Q psy4771 21 YPGLEPEIDFTAFEVAPPRP 40 (337)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ 40 (337)
|-+....+...+-+++.|.+
T Consensus 22 ~i~~~~~~~v~A~~i~~P~p 41 (57)
T PF12354_consen 22 WIGTSNGTKVQAASIPQPAP 41 (57)
T ss_dssp ------------SS-SS-EE
T ss_pred hhcCCCcceeeccccCCCCC
Confidence 44333333444445555443
No 386
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=24.65 E-value=4.9e+02 Score=23.02 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=48.9
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCC----CeeEE----EeccccceeeEEEccCCCEEEEE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKT----KKNKV----LIANLHFANGVELSADESFVIVA 264 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~----~~~~~----~~~~~~~p~gia~~~dg~~lyva 264 (337)
++.+-++.+||++.++--... ..-.+..|++.+ .+... +..+--+|.-..+ +||+.|.+.
T Consensus 68 FCSgg~~L~dG~ll~tGG~~~-----------G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L-~DG~vlIvG 135 (243)
T PF07250_consen 68 FCSGGAFLPDGRLLQTGGDND-----------GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL-PDGRVLIVG 135 (243)
T ss_pred cccCcCCCCCCCEEEeCCCCc-----------cccceEEEecCCCCCCCCceECcccccCCCccccceEC-CCCCEEEEe
Confidence 455666778888775543211 111233344432 11111 2223335665554 589866666
Q ss_pred eCCCCEEEEEEee-CCCCCcee-eeec----C--CCCCCCceeECCCCCEEEEecCC
Q psy4771 265 ETMSSRVHRYYLK-GPKQGKSE-VFID----G--LPGLPDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 265 ~~~~~~I~~~~~~-g~~~~~~~-~~~~----~--~~g~Pdgi~~d~dG~l~va~~~~ 313 (337)
-..... +.|... ........ .+.. . ..-||. +.+-++|++++.....
T Consensus 136 G~~~~t-~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~-~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 136 GSNNPT-YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPF-VHLLPDGNLFIFANRG 190 (243)
T ss_pred CcCCCc-ccccCCccCCCCceeeecchhhhccCccccCce-EEEcCCCCEEEEEcCC
Confidence 555333 333332 11111111 1111 0 111333 4466899988777655
No 387
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=24.60 E-value=4.9e+02 Score=26.02 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=40.8
Q ss_pred CCeEEEEecCcEEEEEeCCce-eEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcCCC
Q psy4771 72 KGDLYMGVDGGHILKLSGGKL-VPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTG 142 (337)
Q Consensus 72 ~g~ly~d~~~g~I~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~~g 142 (337)
+..+..+..||.|.-||.... ...++. .-.|.-+++.|+|.+++.-+..| +..+|..-.
T Consensus 271 E~kLvlGC~DgSiiLyD~~~~~t~~~ka------------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 271 EDKLVLGCEDGSIILYDTTRGVTLLAKA------------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cceEEEEecCCeEEEEEcCCCeeeeeee------------cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 566778999999999987432 222211 13489999999997777655666 788886533
No 388
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=24.39 E-value=3.3e+02 Score=29.40 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=32.3
Q ss_pred cCCccEEEE----cCCCCeeEEEeccccceeeEEEccCCCEEEEEeCCCCEEEEEE
Q psy4771 224 SGSGRLIQY----NPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYY 275 (337)
Q Consensus 224 ~~~G~v~~~----d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~~~~~~I~~~~ 275 (337)
..+|.|+.+ ++.+.+++.+-.--..-.+++||||+..|.++. +.++|..+.
T Consensus 94 ~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT-~~~~l~~mt 148 (928)
T PF04762_consen 94 LASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVT-GEGNLLLMT 148 (928)
T ss_pred ECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEe-CCCEEEEEe
Confidence 345677777 666666665432223457789999998666655 345665544
No 389
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=23.77 E-value=2.1e+02 Score=20.21 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=25.8
Q ss_pred cceEEECCC-CcEEEEECCCc---EEEEEcCCCeEEEEe
Q psy4771 114 PLGIKFDKN-GALHVADAYFG---LYKVNVTTGQTEQLI 148 (337)
Q Consensus 114 P~Gl~~d~~-G~lyVad~~~g---v~~vd~~~g~~~~l~ 148 (337)
+.-+..|++ |+-|+.|.-.. =..+|+++|+...+.
T Consensus 7 qrKvL~DP~SG~Yy~vd~P~Qp~~k~lfDPETGqYVeV~ 45 (75)
T PF15232_consen 7 QRKVLQDPESGQYYVVDAPVQPKTKTLFDPETGQYVEVL 45 (75)
T ss_pred CccEeecCCCCCEEEEecCCCcceeeeecCCCCcEEEEe
Confidence 345788887 79999997644 345799999866554
No 390
>KOG0322|consensus
Probab=23.72 E-value=2.3e+02 Score=25.59 Aligned_cols=68 Identities=21% Similarity=0.211 Sum_probs=41.0
Q ss_pred CCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeE-EEeccccceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 193 IPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK-VLIANLHFANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 193 ~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyva~~~~~~I 271 (337)
..+++.+-+|++|..|-.- +||+.+|.-++.+.- ++.-.-..-|.+|++||-. |..+.+...||
T Consensus 253 Gv~gvrIRpD~KIlATAGW--------------D~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-lmAaaskD~rI 317 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGW--------------DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-LMAAASKDARI 317 (323)
T ss_pred CccceEEccCCcEEeeccc--------------CCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-hhhhccCCceE
Confidence 4578888888887755421 234444443444432 2223345678999999953 77766666776
Q ss_pred EEEE
Q psy4771 272 HRYY 275 (337)
Q Consensus 272 ~~~~ 275 (337)
.-.+
T Consensus 318 SLWk 321 (323)
T KOG0322|consen 318 SLWK 321 (323)
T ss_pred Eeee
Confidence 5543
No 391
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=23.53 E-value=6.1e+02 Score=23.70 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=22.3
Q ss_pred ccEEEEcCCCCeeEEEeccccc-e-eeEEEccCCCEEEEEeC
Q psy4771 227 GRLIQYNPKTKKNKVLIANLHF-A-NGVELSADESFVIVAET 266 (337)
Q Consensus 227 G~v~~~d~~~~~~~~~~~~~~~-p-~gia~~~dg~~lyva~~ 266 (337)
..+++||+.+.+...+. .+.. + .+.++..-++.|||.-.
T Consensus 189 ~~v~~YD~~t~~W~~~~-~~p~~~~~~~a~v~~~~~iYv~GG 229 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAG-ESPFLGTAGSAVVIKGNKLWLING 229 (376)
T ss_pred ceEEEEECCCCeeeECC-cCCCCCCCcceEEEECCEEEEEee
Confidence 46999999988776543 2222 1 23233222346888653
No 392
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=23.34 E-value=5.6e+02 Score=23.19 Aligned_cols=69 Identities=16% Similarity=0.281 Sum_probs=39.0
Q ss_pred CccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEecccc--ceeeEEEccCCCEEEEEeCCCCEE
Q psy4771 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLH--FANGVELSADESFVIVAETMSSRV 271 (337)
Q Consensus 194 pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~--~p~gia~~~dg~~lyva~~~~~~I 271 (337)
...+.+-.+ .|+++|..... .+++|+.+..+...+..... +...+++-.|++.+.++|.. +.|
T Consensus 132 i~sl~~~~~-~I~vgD~~~sv-------------~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~-gnl 196 (321)
T PF03178_consen 132 ITSLSVFKN-YILVGDAMKSV-------------SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD-GNL 196 (321)
T ss_dssp EEEEEEETT-EEEEEESSSSE-------------EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT-SEE
T ss_pred EEEEecccc-EEEEEEcccCE-------------EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC-CeE
Confidence 455555433 79999976331 66777876555655554332 23444444455678888875 555
Q ss_pred EEEEee
Q psy4771 272 HRYYLK 277 (337)
Q Consensus 272 ~~~~~~ 277 (337)
..+..+
T Consensus 197 ~~l~~~ 202 (321)
T PF03178_consen 197 FVLRYN 202 (321)
T ss_dssp EEEEE-
T ss_pred EEEEEC
Confidence 555554
No 393
>PF13964 Kelch_6: Kelch motif
Probab=22.96 E-value=1.7e+02 Score=18.13 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=22.7
Q ss_pred CCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEE
Q psy4771 201 SDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL 242 (337)
Q Consensus 201 ~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~ 242 (337)
-+++||+.-..... ......+++||+.+++.+.+
T Consensus 10 ~~~~iyv~GG~~~~--------~~~~~~v~~yd~~t~~W~~~ 43 (50)
T PF13964_consen 10 VGGKIYVFGGYDNS--------GKYSNDVERYDPETNTWEQL 43 (50)
T ss_pred ECCEEEEECCCCCC--------CCccccEEEEcCCCCcEEEC
Confidence 35688887655321 22345899999999887654
No 394
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.59 E-value=6.9e+02 Score=23.93 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=29.2
Q ss_pred EEEeCCCCEEEEEEeeCCCCCceeeeecCCC-----C-----CCCceeECCCCCEEEEecC
Q psy4771 262 IVAETMSSRVHRYYLKGPKQGKSEVFIDGLP-----G-----LPDNVKRDSKGNFLVSLVC 312 (337)
Q Consensus 262 yva~~~~~~I~~~~~~g~~~~~~~~~~~~~~-----g-----~Pdgi~~d~dG~l~va~~~ 312 (337)
|+.+...--|++|+.+|.......+....++ + .-.+|+++++|...++.-.
T Consensus 159 ~igdefgP~l~~f~~~Gk~~~~~~~~~~~~~~~~p~g~~~n~gfEglait~d~~~L~~~le 219 (391)
T COG4222 159 WIGDEFGPYLLEFDANGKLVRVLEVPVRFLPPDNPKGLRNNLGFEGLAITPDGKKLYALLE 219 (391)
T ss_pred ccccccCcceEEECCCCccccccccccccCcCCCccccccccceeeEEecCCCceEEEEEe
Confidence 6777777899999998643222221111111 1 1367899999874444433
No 395
>COG5134 Uncharacterized conserved protein [Function unknown]
Probab=22.53 E-value=1e+02 Score=26.58 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=26.0
Q ss_pred CccCCcceEEECCCCcEEEEECCCcEEEEEcC
Q psy4771 109 QQCGRPLGIKFDKNGALHVADAYFGLYKVNVT 140 (337)
Q Consensus 109 ~~~~~P~Gl~~d~~G~lyVad~~~gv~~vd~~ 140 (337)
+.|++|..+..||....||+.+ .|+..++++
T Consensus 83 ~~C~n~i~~RTDPkN~~YV~Es-Gg~R~i~pq 113 (272)
T COG5134 83 HLCSNPIDVRTDPKNTEYVVES-GGRRKIEPQ 113 (272)
T ss_pred cCCCCceeeecCCCCceEEEec-CceeecCcc
Confidence 6789999999999999999984 567778765
No 396
>KOG0640|consensus
Probab=22.42 E-value=6.3e+02 Score=23.44 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=20.9
Q ss_pred CCcceEEECCCCcEEEEECCCc-EEEEE
Q psy4771 112 GRPLGIKFDKNGALHVADAYFG-LYKVN 138 (337)
Q Consensus 112 ~~P~Gl~~d~~G~lyVad~~~g-v~~vd 138 (337)
+.-..+...+.|+|||+.++.| |..+|
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWD 289 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeec
Confidence 3456788999999999988777 55555
No 397
>PF12275 DUF3616: Protein of unknown function (DUF3616); InterPro: IPR022060 This family of proteins is found in bacteria. Proteins in this family are typically between 335 and 392 amino acids in length. There is a conserved GLRGPV sequence motif.
Probab=21.86 E-value=2.6e+02 Score=26.06 Aligned_cols=61 Identities=21% Similarity=0.265 Sum_probs=33.7
Q ss_pred eeEEEccCCCEEEEEeCCCCEEEEEEeeCCC----CCcee-----eeecCCCCC------CCceeECCCCCEEEEecCC
Q psy4771 250 NGVELSADESFVIVAETMSSRVHRYYLKGPK----QGKSE-----VFIDGLPGL------PDNVKRDSKGNFLVSLVCP 313 (337)
Q Consensus 250 ~gia~~~dg~~lyva~~~~~~I~~~~~~g~~----~~~~~-----~~~~~~~g~------Pdgi~~d~dG~l~va~~~~ 313 (337)
.+++..+|+ +|||++-...+|.|+...... .+... .+++ +|+. ..|++. .+|.||+...-+
T Consensus 3 Sa~~~~~d~-~l~va~DE~~~i~rL~~~~~~~~~~~~~~~~~~l~~~~~-lp~~~~~e~DiEGla~-~~gyly~igSHS 78 (330)
T PF12275_consen 3 SAAVQLPDG-RLWVASDETANIERLTLDDAGGEDRFGDHASFPLADFFD-LPGPKDKEIDIEGLAY-ADGYLYVIGSHS 78 (330)
T ss_pred ccceEcCCC-eEEEEecCCCCeeEEEecCCCcccccccccccccccccc-cCCCCCcccchhhhhc-cCCeEEEEccCc
Confidence 456666666 577777666777666654321 11111 1111 2221 347777 688888877655
No 398
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=21.73 E-value=5.7e+02 Score=22.67 Aligned_cols=80 Identities=6% Similarity=0.055 Sum_probs=39.0
Q ss_pred cEEEEcCCCCeeEEEec-cccce-eeEEEccCCCEEEEEeCCC---CEE-EEEEeeCCCCCceeeeecCCCCCCCceeEC
Q psy4771 228 RLIQYNPKTKKNKVLIA-NLHFA-NGVELSADESFVIVAETMS---SRV-HRYYLKGPKQGKSEVFIDGLPGLPDNVKRD 301 (337)
Q Consensus 228 ~v~~~d~~~~~~~~~~~-~~~~p-~gia~~~dg~~lyva~~~~---~~I-~~~~~~g~~~~~~~~~~~~~~g~Pdgi~~d 301 (337)
.|-++|+.+-+++.... .+..+ .|=||=-=| .||++++.. .+| +.||....+.....+...+..+....|.-+
T Consensus 149 vvskld~~tL~v~~tw~T~~~k~~~~naFmvCG-vLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YN 227 (250)
T PF02191_consen 149 VVSKLDPETLSVEQTWNTSYPKRSAGNAFMVCG-VLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYN 227 (250)
T ss_pred EEEeeCcccCceEEEEEeccCchhhcceeeEee-EEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeEC
Confidence 56778887766544332 22111 122222235 699998765 333 345544332233344344333345566666
Q ss_pred CCCC-EEE
Q psy4771 302 SKGN-FLV 308 (337)
Q Consensus 302 ~dG~-l~v 308 (337)
+..+ ||+
T Consensus 228 P~dk~LY~ 235 (250)
T PF02191_consen 228 PRDKKLYA 235 (250)
T ss_pred CCCCeEEE
Confidence 6554 544
No 399
>KOG4227|consensus
Probab=21.70 E-value=3.8e+02 Score=25.57 Aligned_cols=67 Identities=9% Similarity=0.040 Sum_probs=40.9
Q ss_pred EEEe--eCCeEEEEecCcEEEEEeCCceeEEEecCccccCccccCccCCcceEEECCCCcEEEEECCCc-EEEEEcC
Q psy4771 67 AVVK--HKGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVT 140 (337)
Q Consensus 67 ~i~~--~~g~ly~d~~~g~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~Gl~~d~~G~lyVad~~~g-v~~vd~~ 140 (337)
++++ .+..+|++...+++++-+-...+++-.+.++ ...+...+|...|-.+++++.+..+ |..+|..
T Consensus 110 ~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~-------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 110 SLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN-------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred EEEEccCCeeEecCCCcceeEeeecccceeeeeeccc-------CcccceeecccCCCCceEEEEecCceEEEEecc
Confidence 4555 3556888888888888776555555444332 2335567888887766665544444 5556643
No 400
>COG5510 Predicted small secreted protein [Function unknown]
Probab=21.57 E-value=1e+02 Score=19.31 Aligned_cols=12 Identities=0% Similarity=0.254 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHH
Q psy4771 4 FRNFFISVVVGI 15 (337)
Q Consensus 4 ~~~~~~~~~~~~ 15 (337)
||++++++.+++
T Consensus 2 mk~t~l~i~~vl 13 (44)
T COG5510 2 MKKTILLIALVL 13 (44)
T ss_pred chHHHHHHHHHH
Confidence 455555444443
No 401
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=20.85 E-value=5.2e+02 Score=29.67 Aligned_cols=138 Identities=20% Similarity=0.226 Sum_probs=67.0
Q ss_pred cceEEECCCCcEEEEECCCcEEEEEcCCCeEEEEeccccccCCCCCCCC-CceeeCCCCCcc--cccceeeeccccCCCC
Q psy4771 114 PLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIP-NSVTVDSDGQTG--QTEQLISMDTEIDGAK 190 (337)
Q Consensus 114 P~Gl~~d~~G~lyVad~~~gv~~vd~~~g~~~~l~~~~~~~~g~~~~~P-~~v~~~~~g~~~--~~~~v~~~~~~~~~~~ 190 (337)
-.|+..+++|..|=.. ...++++|+.....+.... .+. .| ..+....||++| ..+.+..+.+......
T Consensus 365 LTgv~~~~~ge~lRlH-d~~LY~~d~~~~~Wk~~~~-----~~d---~~~S~Ls~qgdG~lYAk~~~~l~nLSs~~~~~~ 435 (1774)
T PF11725_consen 365 LTGVHTDPDGEQLRLH-DDRLYQFDPNTARWKPPPD-----KSD---TPFSSLSRQGDGKLYAKDDDTLVNLSSGQMSEA 435 (1774)
T ss_pred hhccccCCCCCeEEee-cCceeeeccccceecCCCC-----ccc---chhhhhcccCCCceEecCCCceeecCCCCcchh
Confidence 3588888888555432 2558888887554332111 111 01 125556677777 3445555554322110
Q ss_pred -CCCCccEEEcCCCcE-EEEcCCCCccCceeeeeecCCc-cEEEEcCCCCe-------eEEEeccccceeeEEEccCCCE
Q psy4771 191 -PQIPNSVTVDSDGMV-YWSDSSTKYKSGLFEGLTSGSG-RLIQYNPKTKK-------NKVLIANLHFANGVELSADESF 260 (337)
Q Consensus 191 -~~~pn~v~vd~~G~l-yvtd~~~~~~~~~~~~~~~~~G-~v~~~d~~~~~-------~~~~~~~~~~p~gia~~~dg~~ 260 (337)
+.-.....|.++|++ ..++... .+ .++..++..+. ...+.++-.....|++++| +
T Consensus 436 ~v~~l~sfSv~~~g~vA~L~~~d~-------------q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--r 500 (1774)
T PF11725_consen 436 EVDKLKSFSVAPDGTVAMLTGKDG-------------QTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--R 500 (1774)
T ss_pred hhhhcccccccCCCceeeeecCCC-------------cceeeeccCccccccCccceeeeeccCCchhhhheeecCC--e
Confidence 111222334555553 2222221 11 23333332221 1123345556778888866 6
Q ss_pred EEEEeCCCCEEEEEEe
Q psy4771 261 VIVAETMSSRVHRYYL 276 (337)
Q Consensus 261 lyva~~~~~~I~~~~~ 276 (337)
|||+|+. ++++.-++
T Consensus 501 LFvADse-GkLYsa~l 515 (1774)
T PF11725_consen 501 LFVADSE-GKLYSADL 515 (1774)
T ss_pred EEEEeCC-CCEEeccc
Confidence 9999975 56666555
No 402
>PF04571 Lipin_N: lipin, N-terminal conserved region; InterPro: IPR007651 Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. This entry represents a conserved domain found at the N terminus of the member proteins [, ].
Probab=20.68 E-value=3.9e+02 Score=20.50 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=35.5
Q ss_pred CCCCCccEEEc--CCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccceeeEEEccCCCEEEEEe
Q psy4771 190 KPQIPNSVTVD--SDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAE 265 (337)
Q Consensus 190 ~~~~pn~v~vd--~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyva~ 265 (337)
.+....||.+= +||.+--|.+.-+ -|++-.+.+..+.+++...+-..+--+.+.+.|.-.++-+
T Consensus 23 tlSGAiDVIVV~q~DGs~~sSPFhVR------------FGk~~vl~~~ek~V~I~VNG~~~~~~MkLg~~GeAfFv~e 88 (110)
T PF04571_consen 23 TLSGAIDVIVVEQPDGSLKSSPFHVR------------FGKLGVLRPREKVVDIEVNGKPVDFHMKLGENGEAFFVEE 88 (110)
T ss_pred cccCceeEEEEecCCCCEecCccEEE------------EcceeeecccCcEEEEEECCEEcceEEEECCCcEEEEEEe
Confidence 56667777663 4776654444322 2455555555555555555544455677777775444433
No 403
>PRK10115 protease 2; Provisional
Probab=20.58 E-value=9.5e+02 Score=24.82 Aligned_cols=73 Identities=10% Similarity=0.064 Sum_probs=38.2
Q ss_pred ccEEEcCCCc-EEEEcCCCCccCceeeeeecCCccEEEEcCCCC--eeEEEecccccee--eEEEccCCCEEEEEeCCC-
Q psy4771 195 NSVTVDSDGM-VYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTK--KNKVLIANLHFAN--GVELSADESFVIVAETMS- 268 (337)
Q Consensus 195 n~v~vd~~G~-lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~--~~~~~~~~~~~p~--gia~~~dg~~lyva~~~~- 268 (337)
..+++.+||+ +|++...... ...-.||+++..++ +.+.+..+...+. ++..+.|++.+.+....+
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~---------~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~ 245 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVT---------LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASAT 245 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCC---------CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCc
Confidence 3477777765 6655432110 01126888887777 4444444322222 334455887776554433
Q ss_pred -CEEEEEEe
Q psy4771 269 -SRVHRYYL 276 (337)
Q Consensus 269 -~~I~~~~~ 276 (337)
+.++.++.
T Consensus 246 ~~~~~l~~~ 254 (686)
T PRK10115 246 TSEVLLLDA 254 (686)
T ss_pred cccEEEEEC
Confidence 46666664
No 404
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=20.47 E-value=3.6e+02 Score=24.60 Aligned_cols=31 Identities=35% Similarity=0.587 Sum_probs=22.3
Q ss_pred EEeeCCeEE-EEecCcEEEEEeCCceeEEEec
Q psy4771 68 VVKHKGDLY-MGVDGGHILKLSGGKLVPVVKL 98 (337)
Q Consensus 68 i~~~~g~ly-~d~~~g~I~~~~~~~~~~~~~~ 98 (337)
+.+-+|.|| +|...|-|+++..++..+...+
T Consensus 59 Lv~FngkLys~DDrTGiVyeI~~~~~vPwviL 90 (291)
T PF06079_consen 59 LVVFNGKLYSFDDRTGIVYEIKGDKAVPWVIL 90 (291)
T ss_dssp EEEETTEEEEEETTT-EEEEEETTEEEEEEE-
T ss_pred eeeECCEEeeeeCCCceEEEEeCCceeceEEE
Confidence 334589999 9999999999988766554433
No 405
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=20.38 E-value=1e+02 Score=20.60 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCC
Q psy4771 4 FRNFFISVVVGIVAITFYPGL 24 (337)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (337)
-|++-+.+.+++.+++.+.++
T Consensus 40 ~r~~~~~~~li~aLi~v~vvL 60 (64)
T COG4068 40 QRNFMILMFLILALILVMVVL 60 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344444444443334444443
No 406
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=20.37 E-value=2.1e+02 Score=21.49 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCceeeee
Q psy4771 4 FRNFFISVVVGIVAITFYPGLEPEIDFTAFEV 35 (337)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (337)
+|..++++++++.++..+|-+-++.+....+.
T Consensus 7 WKyllil~vl~~~~lyALPnlyge~pAvqIs~ 38 (101)
T PF13721_consen 7 WKYLLILVVLLLGALYALPNLYGEDPAVQISA 38 (101)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCcEEEec
Confidence 57777777777777766674434434444443
No 407
>KOG1310|consensus
Probab=20.20 E-value=6.5e+02 Score=25.34 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=49.2
Q ss_pred CCCccEEEcCCCcEEEEcCCCCccCceeeeeecCCccEEEEcCCCCeeEEEeccccce--eeEEEcc-CCCEEEEEeCCC
Q psy4771 192 QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFA--NGVELSA-DESFVIVAETMS 268 (337)
Q Consensus 192 ~~pn~v~vd~~G~lyvtd~~~~~~~~~~~~~~~~~G~v~~~d~~~~~~~~~~~~~~~p--~gia~~~-dg~~lyva~~~~ 268 (337)
.-.|.++...||.+..+.+.. -++..+|+-..+..-........ -.+-|-| -++.+.++-.+.
T Consensus 51 GCVN~LeWn~dG~lL~SGSDD--------------~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 51 GCVNCLEWNADGELLASGSDD--------------TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred ceecceeecCCCCEEeecCCc--------------ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 457999999999988766542 27777777655544444333322 3444444 355799999999
Q ss_pred CEEEEEEeeC
Q psy4771 269 SRVHRYYLKG 278 (337)
Q Consensus 269 ~~I~~~~~~g 278 (337)
..|..|+++.
T Consensus 117 k~i~lfdl~~ 126 (758)
T KOG1310|consen 117 KLIKLFDLDS 126 (758)
T ss_pred ceEEEEeccc
Confidence 9999999974
No 408
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=20.12 E-value=35 Score=27.16 Aligned_cols=14 Identities=14% Similarity=0.458 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHH
Q psy4771 1 MAFFRNFFISVVVG 14 (337)
Q Consensus 1 m~~~~~~~~~~~~~ 14 (337)
|+++||+++.++++
T Consensus 1 M~~~kk~l~~~l~~ 14 (144)
T PF12869_consen 1 MKILKKILIIILIL 14 (144)
T ss_dssp --------------
T ss_pred CchhhhHHHHHHHH
Confidence 77677765554444
Done!