RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4771
(337 letters)
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 181 bits (460), Expect = 6e-55
Identities = 80/286 (27%), Positives = 125/286 (43%), Gaps = 53/286 (18%)
Query: 45 LALNEKLNNAEKLFENEIHGPEAVVKHK--GDLYMGVDGGHILKLSGGKLVPVV------ 96
LAL+ + E L E + P + Y V G ++K G V
Sbjct: 2 LALSSPIL-KEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASP 60
Query: 97 ----KLGKDCYGFKYEQQCGRPLGIKFD-KNGALHVADAYFGLYKVNVTTGQTEQLISMD 151
++ + CGR I ++ +N L++ D Y+ L V G QL
Sbjct: 61 YWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLA--- 117
Query: 152 TEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSS 211
T +DG + +VTVD G+VY++D S
Sbjct: 118 TSVDGVPFKWLYAVTVD-------------------------------QRTGIVYFTDVS 146
Query: 212 TKYK---SGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS 268
T Y + +GRLI+Y+P TK+ +L+ LH G E+SAD SFV+VAE +S
Sbjct: 147 TLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLS 206
Query: 269 SRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCPV 314
++ +Y+L+GPK+G +EV + +P P N+KR++ G+F VS +
Sbjct: 207 HQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEEL 250
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 86.4 bits (213), Expect = 3e-19
Identities = 26/149 (17%), Positives = 46/149 (30%), Gaps = 5/149 (3%)
Query: 186 IDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLT-SGSGRLIQYNPKTKKNKVLIA 244
I N + Y ++ L G +V+
Sbjct: 159 IRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE 218
Query: 245 NLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS-K 303
FANG+ +S D +V +AE ++ ++H Y + L DN+ D
Sbjct: 219 GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVT 277
Query: 304 GNFLVSLVCPVEQPSEQAGNIRDPAGAQA 332
G+ V C + +P G++
Sbjct: 278 GDLWVG--CHPNGMRIFFYDAENPPGSEV 304
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 79.0 bits (195), Expect = 7e-17
Identities = 37/210 (17%), Positives = 67/210 (31%), Gaps = 46/210 (21%)
Query: 111 CGRPLGIKFDKNGA-LHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 169
G P G + D++ L VAD GL V E
Sbjct: 70 GGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIA---------------------- 107
Query: 170 DGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFE-GLTSGSGR 228
+ +G + Q N D +G ++ + + + + + G
Sbjct: 108 -------------KKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGS 154
Query: 229 LIQYNPKTKKNKVLIANLHFANGVELSADES----FVIVAETMSSRVHRYYLKGPKQ-GK 283
+ + + + F NG+ + +IVAET + ++ Y +KGP +
Sbjct: 155 IYCFTTDGQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN 213
Query: 284 SEVFID---GLPGLPDNVKRDSKGNFLVSL 310
+V+ G D + D N LV+
Sbjct: 214 KKVWGHIPGTHEGGADGMDFDEDNNLLVAN 243
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 70.9 bits (174), Expect = 4e-14
Identities = 44/209 (21%), Positives = 78/209 (37%), Gaps = 37/209 (17%)
Query: 119 FDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQ----- 172
FD+ G L + D + G ++K+N T + + P ++ + DG+
Sbjct: 52 FDRQGQLFLLDVFEGNIFKINPETKEI-------KRPFVSHKANPAAIKIHKDGRLFVCY 104
Query: 173 ---TGQTEQLISMDTE-------IDGAKPQI-PNSVTVDSDGMVYWSDSSTKYKSGLFEG 221
T + + I+ + + DS G Y++D
Sbjct: 105 LGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR--------GY 156
Query: 222 LTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLK---- 277
T+ G + +P + +I N+ ANG+ LS DE + V ET ++R+HR L+
Sbjct: 157 STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV 216
Query: 278 -GPKQGKSEVFIDGLPGLPDNVKRDSKGN 305
G + + PD+ DS N
Sbjct: 217 TIQPFGATIPYYFTGHEGPDSCCIDSDDN 245
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 67.8 bits (166), Expect = 4e-13
Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 36/196 (18%)
Query: 112 GRPLGIKFDKNGALHVAD-AYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 170
G +K G L L + G+ E + +G K PN V + D
Sbjct: 69 HHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIA---DSFEGKKLNSPNDVCLAPD 125
Query: 171 GQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLI 230
G ++ +D +G ++ V+
Sbjct: 126 GSLWFSDPTYGIDKPEEGYGGEMELPG-----RWVFRLAPDGTLS--------------- 165
Query: 231 QYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQ-GKSEVFID 289
I + NG+ + ++V++T + HRY L + V
Sbjct: 166 ----------APIRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHFT 214
Query: 290 GLPGLPDNVKRDSKGN 305
PG D ++ D+ G
Sbjct: 215 VEPGKTDGLRVDAGGL 230
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 61.7 bits (150), Expect = 5e-11
Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 22/168 (13%)
Query: 159 PQIPNSVTVDSDGQ--TGQTEQLISMDTEIDGAKPQI-----------PNSVTVDSDGMV 205
N VD+ + + + ++ DG + PN + V DG +
Sbjct: 85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAI 144
Query: 206 YWSDSSTKYKS---GLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVI 262
+++D + G + + P +A+L NG+ S DE +
Sbjct: 145 WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-LQRMADLDHPNGLAFSPDEQTLY 203
Query: 263 VAETMSSRVHRYYL-----KGPKQGKSEVFIDGLPGLPDNVKRDSKGN 305
V++T + + F GLPD D G
Sbjct: 204 VSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW 251
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 60.8 bits (147), Expect = 1e-10
Identities = 30/210 (14%), Positives = 67/210 (31%), Gaps = 31/210 (14%)
Query: 116 GIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQ-- 172
+ +G + V + G + + G + +++ + + + S+G
Sbjct: 36 NLASAPDGTIFVTNHEVGEIVSIT-PDGNQQIHATVEGK--------VSGLAFTSNGDLV 86
Query: 173 ----TGQTEQLISMDTE-------IDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEG 221
+ ++S+ + N +T SD +DS
Sbjct: 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGA--IWLID 144
Query: 222 LTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP-K 280
+ SG + +P + F L +F+ V+ T + R + K
Sbjct: 145 VVQPSGSIWLEHPML---ARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDK 201
Query: 281 QGKSEVFIDGLPGLPDNVKRDSKGNFLVSL 310
G+ E+F++ D+ D +GN +
Sbjct: 202 PGEPEIFVEQTN--IDDFAFDVEGNLYGAT 229
Score = 39.9 bits (93), Expect = 7e-04
Identities = 10/117 (8%), Positives = 34/117 (29%), Gaps = 18/117 (15%)
Query: 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVE 253
++ DG ++ ++ G ++ P + ++ +G+
Sbjct: 34 LENLASAPDGTIFVTN--------------HEVGEIVSITPDGNQ-QIHATVEGKVSGLA 78
Query: 254 LSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPG-LPDNVKRDSKGNFLVS 309
+++ + + + L G E + + + S +L +
Sbjct: 79 FTSNGDL-VATGWNADSIPVVSLVKSD-GTVETLLTLPDAIFLNGITPLSDTQYLTA 133
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 60.8 bits (148), Expect = 1e-10
Identities = 29/210 (13%), Positives = 62/210 (29%), Gaps = 37/210 (17%)
Query: 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 170
+ + + G + + + K++ G TE + G P +T +
Sbjct: 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTE--YPLPQPDSG-----PYGITEGLN 114
Query: 171 G------QTGQTEQLISMDTEID----GAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFE 220
G G ++ D I K P +T+ SD +++++
Sbjct: 115 GDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTE----------- 163
Query: 221 GLTSGSGRLIQYNPKTKKNKV-LIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279
+ + + + K + L N G+ D + + E M +++ R
Sbjct: 164 ---NQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRI---TT 216
Query: 280 KQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 309
SE I P + +
Sbjct: 217 TGEISEYDIPTPNARPHAITAGKNSEIWFT 246
Score = 58.1 bits (141), Expect = 7e-10
Identities = 21/212 (9%), Positives = 51/212 (24%), Gaps = 37/212 (17%)
Query: 110 QCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD 168
P GI ++G + + ++ + E + + V
Sbjct: 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEV-------PTPDAKVMCLIVS 70
Query: 169 SDG------QTGQTEQLISMDTEIDGAKPQI----PNSVTVDSDGMVYWSDSSTKYKSGL 218
S G +S P +T +G ++++
Sbjct: 71 SLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQ--------- 121
Query: 219 FEGLTSGSGRLIQYNPKTKKNKV-LIANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277
R+ + + L + + L +D + + E ++ + R
Sbjct: 122 -----LNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRI--- 172
Query: 278 GPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 309
E + P + + G
Sbjct: 173 TNTGKLEEYPLPTNAAAPVGITSGNDGALWFV 204
Score = 46.2 bits (110), Expect = 7e-06
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 18/112 (16%)
Query: 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 170
P+GI +GAL + + ++ T +E + T P+++T +
Sbjct: 188 AAPVGITSGNDGALWFVEIMGNKIGRITTTGEISE--YDIPTPNAR-----PHAITAGKN 240
Query: 171 G------QTGQTEQLISMDTEIDGAKPQ----IPNSVTVDSDGMVYWSDSST 212
I+ D I + Q P+ +T DG V+++
Sbjct: 241 SEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALKCK 292
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 57.0 bits (138), Expect = 2e-09
Identities = 22/210 (10%), Positives = 64/210 (30%), Gaps = 37/210 (17%)
Query: 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 170
+ + + +G + + + ++ E ++ P +T +
Sbjct: 57 AKVMCLTISSDGEVWFTENAANKIGRITKKGIIKE--YTLPNPDSA-----PYGITEGPN 109
Query: 171 G------QTGQTEQLISMDTEID----GAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFE 220
G G I+ D +I K P+ +T+ SD +++++
Sbjct: 110 GDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTE----------- 158
Query: 221 GLTSGSGRLIQYNPKTKKNKV-LIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP 279
+ + + + + + G+ D++ + E + +++ R G
Sbjct: 159 ---NQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITTSG- 213
Query: 280 KQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 309
+E I P + + + +
Sbjct: 214 --EITEFKIPTPNARPHAITAGAGIDLWFT 241
Score = 56.2 bits (136), Expect = 3e-09
Identities = 29/212 (13%), Positives = 61/212 (28%), Gaps = 37/212 (17%)
Query: 110 QCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD 168
Q P GI G + + + +N+ TE + T +T+
Sbjct: 13 QDTGPYGITVSDKGKVWITQHKANMISCINLDGKITE--YPLPTPDAK-----VMCLTIS 65
Query: 169 SDG------QTGQTEQLISMDTEID----GAKPQIPNSVTVDSDGMVYWSDSSTKYKSGL 218
SDG I+ I P +T +G +++++
Sbjct: 66 SDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTE--------- 116
Query: 219 FEGLTSGSGRLIQYNPKTKKNKV-LIANLHFANGVELSADESFVIVAETMSSRVHRYYLK 277
R+ + K + L + + + L +D + + E ++ + R
Sbjct: 117 -----MNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITES 170
Query: 278 GPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 309
G +E I P + + +
Sbjct: 171 G---DITEFKIPTPASGPVGITKGNDDALWFV 199
Score = 47.3 bits (113), Expect = 2e-06
Identities = 25/178 (14%), Positives = 53/178 (29%), Gaps = 34/178 (19%)
Query: 112 GRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 170
P I + AL + + ++ + TE + T G P +T +D
Sbjct: 141 SYPSFITLGSDNALWFTENQNNAIGRITESGDITE--FKIPTPASG-----PVGITKGND 193
Query: 171 G------QTGQTEQLISMDTEIDGAKPQIPNS----VTVDSDGMVYWSDSSTKYKSGLFE 220
G I+ EI K PN+ +T + +++++
Sbjct: 194 DALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTE----------- 242
Query: 221 GLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKG 278
G+ ++ + + I A + D + A ++ + L
Sbjct: 243 ---WGANKIGRLTSNNIIEEYPIQIK-SAEPHGICFDGETIWFAME-CDKIGKLTLIK 295
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 1e-08
Identities = 62/312 (19%), Positives = 99/312 (31%), Gaps = 96/312 (30%)
Query: 8 FISVVVGIVAITFYPGLE-----PEIDFTAFEVA--------PPRP-----------LEG 43
F V + + F+ G+ P + P P ++
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 44 KL-ALNEKLNNAEKLFENEIHGPEAVV--KHKGDLYMGVDGGHILKLSGGKLVPVVKLGK 100
+ N L +++ + ++G + +V LY G L L K G
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY-----GLNLTLRKAKAPS----GL 402
Query: 101 DCYGFKYEQQCGRPL--GIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAK 158
D + + R L +F L VA + V + + L+ + +
Sbjct: 403 DQSRIPFSE---RKLKFSNRF-----LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 159 PQIPNSV--TVD-SDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYK 215
QIP V T D SD L + I +I + + V W +++T++K
Sbjct: 455 IQIP--VYDTFDGSD--------LRVLSGSIS---ERIVDCIIRLP---VKW-ETTTQFK 497
Query: 216 S------GLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSS 269
+ G G SG G L T +NK GV VIVA T+
Sbjct: 498 ATHILDFG--PGGASGLGVL------THRNKD-------GTGVR-------VIVAGTLDI 535
Query: 270 RVHRYYLKGPKQ 281
Y G KQ
Sbjct: 536 NPDDDY--GFKQ 545
Score = 37.7 bits (87), Expect = 0.005
Identities = 29/126 (23%), Positives = 41/126 (32%), Gaps = 37/126 (29%)
Query: 28 IDFTAFEVAPPRPLEGKLALNEKLNNAEK--LFENEIHGPEAVVKHKGDLYMGVDGGHIL 85
+ + + V P + + LN L E L N+IH A+ +L
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH---ALA------------AKLL 109
Query: 86 KLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGAL--HVAD------AYFGLYKV 137
+ + LV +L K Y RP K N AL V + A FG
Sbjct: 110 QENDTTLVKTKELIK-NY-ITARIMAKRPFDKK--SNSALFRAVGEGNAQLVAIFG---- 161
Query: 138 NVTTGQ 143
GQ
Sbjct: 162 ----GQ 163
Score = 33.9 bits (77), Expect = 0.084
Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 72/215 (33%)
Query: 162 PNSVTVDSDGQTGQ--TEQLISM--DTEIDGAKP--QIPNSVTVDSDGMVYWSD----SS 211
P ++T+ G+ G+ E +M +T +DG +I + S + S+ S+
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 212 TKY--------KSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFAN---GVELSADESF 260
T++ + FE L K ++ A+ FA G E +A
Sbjct: 1729 TQFTQPALTLMEKAAFEDL--------------KSKGLIPADATFAGHSLG-EYAA---L 1770
Query: 261 VIVAETMS-----SRVH-R-----YYLKGPKQGKSEVFIDGL-PG----------LPDNV 298
+A+ MS V R + + G+S + + PG L V
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Query: 299 KRDSK-GNFLVSLV---CPVEQPSEQ---AGNIRD 326
+R K +LV +V ++Q AG++R
Sbjct: 1831 ERVGKRTGWLVEIVNYNV----ENQQYVAAGDLRA 1861
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 51.1 bits (123), Expect = 1e-07
Identities = 46/268 (17%), Positives = 91/268 (33%), Gaps = 54/268 (20%)
Query: 59 ENEIHGPEAV-VKHKGDLYMGVDGGH--ILKLS-GGKLVPVVKLGKDCYGFKYEQQCGRP 114
+ P V V G++Y+ +G + ++KL+ G V+ +P
Sbjct: 20 IDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN----------GLYQP 69
Query: 115 LGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQ-- 172
G+ D G ++V D + + + T + P + VD+ G
Sbjct: 70 QGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-------TVLPFDGLNYPEGLAVDTQGAVY 122
Query: 173 ---TGQTE-QLISMD----TEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTS 224
G ++ T + P+ V VD+ G VY +D +
Sbjct: 123 VADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTD--------------T 168
Query: 225 GSGRLIQYNPKTKKNKVL-IANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGK 283
+ R+++ ++ VL ++ G+ + + V V E +++V +
Sbjct: 169 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGS----- 222
Query: 284 SEVFIDGLPGL--PDNVKRDSKGNFLVS 309
+ + GL P V DS V+
Sbjct: 223 TTSTVLPFTGLNTPLAVAVDSDRTVYVA 250
Score = 34.5 bits (80), Expect = 0.029
Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 32/152 (21%)
Query: 73 GDLYMGVDGG--HILKLS-GGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVAD 129
G +Y+ D G ++KL+ G K V+ G P G+ D +G ++V D
Sbjct: 119 GAVYV-ADRGNNRVVKLAAGSKTQTVLPFT----GLND------PDGVAVDNSGNVYVTD 167
Query: 130 AYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG------QTGQTEQLISM 182
+ K+ + + P + VD G +
Sbjct: 168 TDNNRVVKLEAESNNQ-------VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 220
Query: 183 D----TEIDGAKPQIPNSVTVDSDGMVYWSDS 210
T + P +V VDSD VY +D
Sbjct: 221 GSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR 252
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid
(ONE-component...; beta-propeller, beta-sandwich; 3.30A
{Bacteroides thetaiotaomicron}
Length = 781
Score = 43.1 bits (102), Expect = 9e-05
Identities = 24/204 (11%), Positives = 58/204 (28%), Gaps = 38/204 (18%)
Query: 52 NNAEKLFENEIHGPEAVVKHKGDLYMGVDGGHILKL--SGGKLVPVVKLGKDCYGFKYEQ 109
+ + L N++ + V+ L++ I L + GK K E
Sbjct: 107 EDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNK--STVPALPSE- 163
Query: 110 QCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 169
+ ++G L++ GL +++ + + + + D+
Sbjct: 164 ---QTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDT 220
Query: 170 DG---------------QTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKY 214
+G T + I GA S+ D ++ +
Sbjct: 221 NGNIWIGTSKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIA------ 274
Query: 215 KSGLFEGLTSGSGRLIQYNPKTKK 238
T +G ++ + + +
Sbjct: 275 --------TELNG-IMILDLQQNQ 289
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP;
transcription, beta-propeller; HET: PGE PG4 MES 2PE;
2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Length = 795
Score = 39.2 bits (92), Expect = 0.002
Identities = 39/301 (12%), Positives = 77/301 (25%), Gaps = 78/301 (25%)
Query: 71 HKGDLYMGVDGGHILKLS--GGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVA 128
+Y+G + S V+ + I + VA
Sbjct: 182 QGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA----------ILQQSPTRIWVA 231
Query: 129 DAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG---------------QT 173
GL+ +N T + + + + S+ +DS T
Sbjct: 232 TEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGT 291
Query: 174 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGMV----------YWSDSSTKYK----SGLF 219
S E + S+ +DS G + Y+ ++K
Sbjct: 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYK 351
Query: 220 EGL-------------------TSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESF 260
L T+ G L YNP T++ + + ++
Sbjct: 352 NSLSDNVVSCIVEDKDKNLWIGTNDGG-LNLYNPITQRFTSYTLQ-EDESARGIGSNNIK 409
Query: 261 VIVAE---------TMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDN----VKRDSKGNFL 307
+ + T + + + G+ E F L + + D +GN
Sbjct: 410 AVYVDEKKSLVYIGTHAGGLSILH---RNSGQVENFNQRNSQLVNENVYAILPDGEGNLW 466
Query: 308 V 308
+
Sbjct: 467 L 467
Score = 28.8 bits (65), Expect = 2.8
Identities = 18/198 (9%), Positives = 49/198 (24%), Gaps = 48/198 (24%)
Query: 71 HKGDLYMGVDGG-HILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVAD 129
L + G + + K + + + +++
Sbjct: 140 SPEQLLISTPEGLIMFDIKESKFIDDSFSTAMHKTIAS---------TLYRQGDQIYIGT 190
Query: 130 AYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG----------------QT 173
+ GLY ++T E++I + ++ S +T
Sbjct: 191 STDGLYTYSITQKTFEKVIPILGTKQ------IQAILQQSPTRIWVATEGAGLFLINPKT 244
Query: 174 GQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYN 233
+ + + + S+ +DS ++ + + + L Y+
Sbjct: 245 KEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW---------------IGTFND-LNIYH 288
Query: 234 PKTKKNKVLIANLHFANG 251
T +N
Sbjct: 289 EGTDSFASYSSNPVENGS 306
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 38.6 bits (90), Expect = 0.002
Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 18/167 (10%)
Query: 111 CGRPLGIKFDKNGA-LHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 169
G+ D G L+ +A L ++ + DG + ++++D+
Sbjct: 184 GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK--KLLDDGKEHF-FINISLDT 240
Query: 170 DGQ----TGQTEQLISMDTEIDGAKPQIPNSVTV-DSDGMVYWSDSSTKYKSGLFEGLTS 224
Q T + + +D I V +S +++ + Y +
Sbjct: 241 ARQRAFITDSKAAEVLV---VDTRNGNILAKVAAPESLAVLFNPARNEAYVT------HR 291
Query: 225 GSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRV 271
+G++ + K+ K N + LSAD + V+ S
Sbjct: 292 QAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQKSTK 338
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 36.7 bits (85), Expect = 0.008
Identities = 34/255 (13%), Positives = 78/255 (30%), Gaps = 54/255 (21%)
Query: 59 ENEIHGPEAV-VKHKGDLYMGVDGGH-ILKLS-GGKLVPVVKLGKDCYGFKYEQQCGRPL 115
+N + P + + G+ ++ H + KL K P++ LG+ + +P
Sbjct: 87 KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT 146
Query: 116 GIKFD-KNGALHVADAYFGLYKVNV--TTGQTEQLISMDTEIDGAKPQ---IPNSVTV-- 167
+ + GA+ V+D Y ++ +G+ ++ +P +P+S+ +
Sbjct: 147 DVAVEPSTGAVFVSDGY-CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP 205
Query: 168 ------------------DSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSD 209
+D + E + A +G Y+ D
Sbjct: 206 HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA-ISYIPGFLFAVNGKPYFGD 264
Query: 210 SST------KYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIV 263
+ SG R + + + S D + V +
Sbjct: 265 QEPVQGFVMNFSSGEIID-VFKPVR---------------KHFDMPHDIVASEDGT-VYI 307
Query: 264 AETMSSRVHRYYLKG 278
+ ++ V ++ L
Sbjct: 308 GDAHTNTVWKFTLTE 322
Score = 30.6 bits (69), Expect = 0.64
Identities = 22/174 (12%), Positives = 52/174 (29%), Gaps = 29/174 (16%)
Query: 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG 171
G+ G+ D L + G + + + ++ + + I + +D +
Sbjct: 24 GQVSGVALDSKNNLVIFH--RGDHVWDGNSFDSKFVYQQRGLGPIEEDTI---LVIDPNN 78
Query: 172 QTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSST----KYKSGLFEGLTSGSG 227
S P+ +++D+DG + +D + K
Sbjct: 79 AEILQS---SGKNLFYL-----PHGLSIDTDGNYWVTDVALHQVFKL---------DPHS 121
Query: 228 RLIQYNPKTKKNKVLIANLHFAN--GVELSADESFVIVAETMS-SRVHRYYLKG 278
+ + + HF V + V V++ SR+ ++ G
Sbjct: 122 KEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG 175
Score = 27.5 bits (61), Expect = 6.8
Identities = 19/142 (13%), Positives = 37/142 (26%), Gaps = 21/142 (14%)
Query: 188 GAKPQIPNSVTVDSDGMVYWSDSS----------TKYKSGLFEGLTSGSGRLIQYNPKTK 237
P + V +DS + +K+ ++ +P
Sbjct: 20 YLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA 79
Query: 238 KNKVLIANLHFAN--GVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPG-- 293
+ F G+ + D V + +V + + + PG
Sbjct: 80 EILQSSGKNLFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSD 138
Query: 294 -----LPDNVKRD-SKGNFLVS 309
P +V + S G VS
Sbjct: 139 QNHFCQPTDVAVEPSTGAVFVS 160
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP:
b.68.6.1
Length = 326
Score = 36.1 bits (84), Expect = 0.013
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 220 EGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYL--- 276
+G+G + L A++ N + S D + +T +R+ R L
Sbjct: 154 RKAETGAGSIYHVAKGKVT--KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR 211
Query: 277 KGPKQGKSEVFID--GLPGLPDNVKRDSKGN 305
G GK+EVFID G+ G D D++G+
Sbjct: 212 TGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH 242
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 36.4 bits (84), Expect = 0.014
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 14/101 (13%)
Query: 220 EGLTSGSGRLIQYNPKTKKNKVLIAN------LHFANGVELSADESFVIVAETMSSRVHR 273
E L ++ +N + + V + N H N +S D F+++ + R
Sbjct: 29 EYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLE-YNYVKQWR 87
Query: 274 ------YYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLV 308
Y + + + + +P V G+ L
Sbjct: 88 HSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLA 127
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 35.0 bits (80), Expect = 0.026
Identities = 27/217 (12%), Positives = 67/217 (30%), Gaps = 40/217 (18%)
Query: 109 QQCGRPLGIKFD-KNGALHVADAYFGL---YKVNVTTGQTEQLISMDTEIDGAKPQIPNS 164
+ + + + ++ +D + +++ G + + +I P+
Sbjct: 27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA-----PDG 81
Query: 165 VTVDSDGQ----TGQTEQLISMDTEIDGAKPQI--------PNSVTVD-SDGMVYWSDSS 211
+ VD T +S+ + G K + P ++ VD G +YW+D
Sbjct: 82 LAVDWIHSNIYWTDSVLGTVSV-ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 140
Query: 212 TKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI-ANLHFANGVELSADESFVIVAETMSSR 270
T K +G L+ N+ + NG+ L + ++
Sbjct: 141 TPAKIKKGG--LNGVDI-----------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 187
Query: 271 VHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFL 307
+ + G + + ++ L + +
Sbjct: 188 ISSIDVNGGNR---KTILEDEKRLAHPFSLAVFEDKV 221
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 35.2 bits (81), Expect = 0.027
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 223 TSGSGRLIQYNPKTKKNKVLIANLHFAN----GVELSADESFVIVAETMSSRVHRYYLKG 278
S ++ YN +T ++ +++N + LS D FV + + S++ RY
Sbjct: 32 QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLE-SDYSKLWRYSYTA 90
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 34.9 bits (80), Expect = 0.031
Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 32/129 (24%)
Query: 114 PLGIKFDKNGALHVADAYFG-LYKVN----VTT--GQTEQLISMDTEIDGAKPQIPNSVT 166
P I + + +++D +YK+ G Q D + A PN +T
Sbjct: 270 PYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMT 329
Query: 167 VDSDGQ-------------------------TGQTEQLISMDTEIDGAKPQIPNSVTVDS 201
VD DG GQ + +D A P + D
Sbjct: 330 VDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG 389
Query: 202 DGMVYWSDS 210
+G + +++
Sbjct: 390 EGGYWIAEA 398
Score = 34.2 bits (78), Expect = 0.060
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 113 RPLGIKFDKNGALHVADAYFG--LYKVN-----VTT--GQTEQLISMDTEIDGAKPQIPN 163
+P G+ D++G ++ D + G L K++ V+T GQ + +D A P
Sbjct: 324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPY 383
Query: 164 SVTVDSDG 171
+ D +G
Sbjct: 384 DICYDGEG 391
Score = 33.4 bits (76), Expect = 0.11
Identities = 16/146 (10%), Positives = 38/146 (26%), Gaps = 7/146 (4%)
Query: 73 GDLYMGVDGGH-ILKLS-GGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADA 130
+ + +S V V G + R I ++ ++V
Sbjct: 142 NTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMK 201
Query: 131 YFGLYKVNVTTGQTEQ-----LISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTE 185
G + + +++D + N + +T + + ++
Sbjct: 202 ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS 261
Query: 186 IDGAKPQIPNSVTVDSDGMVYWSDSS 211
P + D Y SD +
Sbjct: 262 GSLGTNPGPYLIYYFVDSNFYMSDQN 287
Score = 33.0 bits (75), Expect = 0.14
Identities = 22/123 (17%), Positives = 35/123 (28%), Gaps = 24/123 (19%)
Query: 112 GRPLGIKFD-KNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 170
G+ + D L+ D+ + NV T + + ++ P + D
Sbjct: 219 GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD 278
Query: 171 G----------------QTGQTEQLI-------SMDTEIDGAKPQIPNSVTVDSDGMVYW 207
G+ E D + A PN +TVD DG Y
Sbjct: 279 SNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYI 338
Query: 208 SDS 210
D
Sbjct: 339 VDG 341
Score = 30.7 bits (69), Expect = 0.66
Identities = 24/223 (10%), Positives = 57/223 (25%), Gaps = 41/223 (18%)
Query: 113 RPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLIS---MDTEIDGAKPQIPNSVTVD 168
GI N + + ++V + + Q S+ +
Sbjct: 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWE 191
Query: 169 SDGQ----TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTS 224
+ + ++ +V +D + S
Sbjct: 192 GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSN------------ 239
Query: 225 GSGRLIQYNPKTKKNKVL--------IANLHFANGVELSADESFVIVAETMSSRVHRYYL 276
++N KT++ ++ + + D + +++ S V++
Sbjct: 240 --KNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN-FYMSDQNLSSVYKITP 296
Query: 277 KGPK-----QGKSEVFIDGLPGL-----PDNVKRDSKGNFLVS 309
G + DGL P+ + D GNF +
Sbjct: 297 DGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV 339
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 34.9 bits (80), Expect = 0.036
Identities = 23/183 (12%), Positives = 58/183 (31%), Gaps = 34/183 (18%)
Query: 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQI---------P 162
G P G+ K+G LY + E K ++
Sbjct: 254 GLPRGLLLSKDGKE--------LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNK 305
Query: 163 NSVTVDSDGQ----TGQTEQLISMDTEIDGAKPQI---------PNSVTVDSDG-MVYWS 208
+ + + I + D + ++ PN++ + DG +Y S
Sbjct: 306 RHIVSGNTENKIYVSDMCCSKIEV---YDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVS 362
Query: 209 DSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMS 268
+ + + G++ + T K + G+++S D ++++++ +
Sbjct: 363 CRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLD 422
Query: 269 SRV 271
++
Sbjct: 423 HQI 425
Score = 34.1 bits (78), Expect = 0.065
Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 26/188 (13%)
Query: 114 PLGIKFDKNGA-LHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG 171
+ +D ++ ++ + ++ T + P + + DG
Sbjct: 214 SKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGL--------PRGLLLSKDG 265
Query: 172 QT--------GQTEQLISMDTEIDGAKPQIPNSVTVDSD--GMVYWSDSSTKYKSGLFEG 221
+ E K ++ +++ + +V + + Y S
Sbjct: 266 KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSD---- 321
Query: 222 LTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQ 281
++ Y+ K KK + I N + LS D ++ V+ + YLK
Sbjct: 322 --MCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLV 379
Query: 282 GKSEVFID 289
ID
Sbjct: 380 LGKVYVID 387
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 33.7 bits (77), Expect = 0.068
Identities = 27/184 (14%), Positives = 53/184 (28%), Gaps = 44/184 (23%)
Query: 52 NNAEKLFENEIHGPE--AVVKHKGDLYMGVDGG----HILKLSGGKLVPVVKLGKDCYGF 105
+ ++ PE A+ ++ D + K+ G + + G
Sbjct: 68 GEPTTIIRQDLGSPEGIALDHLGRTIFW-TDSQLDRIEVAKMDGTQRRVLFDTGLV---- 122
Query: 106 KYEQQCGRPLGIKFD-KNGALHVADAYFGLYKV---NVTTGQTEQLISMDTEIDGAKPQI 161
P GI D G L+ D K+ ++ L + +
Sbjct: 123 -------NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL------- 168
Query: 162 PNSVTVDSDGQT-----GQTEQLISMDTEIDGAKPQI-------PNSVTVDSDGMVYWSD 209
PN +T D+ T + ++ + P +VT +Y++D
Sbjct: 169 PNGLTFDAFSSQLCWVDAGTHRAECLN--PAQPGRRKVLEGLQYPFAVTSYGK-NLYYTD 225
Query: 210 SSTK 213
T
Sbjct: 226 WKTN 229
Score = 27.9 bits (62), Expect = 4.9
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 192 QIPNSVTVDS-DGMVYWSDSSTK 213
++ + D D +VYW+D S
Sbjct: 36 KVIIGLAFDCVDKVVYWTDISEP 58
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase,
organophosphate hydrolase, calcium bound, alternative
splicing, cytoplasm, phosphoprotein; 1.42A {Homo
sapiens} PDB: 3g4h_B
Length = 297
Score = 33.4 bits (77), Expect = 0.075
Identities = 29/189 (15%), Positives = 62/189 (32%), Gaps = 31/189 (16%)
Query: 134 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNS--VTVDS-----DGQTGQTEQLISMDTEI 186
+ + + T Q ++ ++MD + + T+ + + + L ++D +
Sbjct: 37 VCRWDSFTKQVQR-VTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAVVLATVDNDK 95
Query: 187 ------DGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNK 240
DG VD G Y++ T + L G L P K
Sbjct: 96 KNNRFNDGK---------VDPAG-RYFA--GTMAEETAPAVLERHQGALYSLFPDHHVKK 143
Query: 241 VLIANLHFANGVELSADESFVIVAETMSSRVHRYYL--KGPKQGKSEVFID--GLPGLPD 296
+ +NG++ S D +++S V + + + +PD
Sbjct: 144 YF-DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPD 202
Query: 297 NVKRDSKGN 305
+ D++G
Sbjct: 203 GMCIDAEGK 211
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 33.7 bits (77), Expect = 0.092
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 223 TSGSGRLIQYNPKTKKNKVLIANLHFANG----VELSADESFVIVAETMSSRVHRYYLKG 278
G + +N +T + VLI + E+S D + + + ++++ G
Sbjct: 33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFS-YNVEPIYQHSYTG 91
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 32.9 bits (76), Expect = 0.12
Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 15/113 (13%)
Query: 110 QCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 169
Q P + +N + +++ + + + + Q P VTVD+
Sbjct: 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFV----RKFGATILQHPRGVTVDN 130
Query: 170 DGQ-----TGQTE-QLISMD----TEIDGAK-PQIPNSVTVDSDGMVYWSDSS 211
G+ + + + +K + PN V V+ ++ SD+
Sbjct: 131 KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183
Score = 30.2 bits (69), Expect = 0.73
Identities = 18/122 (14%), Positives = 43/122 (35%), Gaps = 25/122 (20%)
Query: 105 FKYEQQCGRPLGIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPN 163
F + P G+ + + ++D + N GQ + I + + P
Sbjct: 157 FGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFN-YEGQYLRQIGGEGITNY-----PI 210
Query: 164 SVTVDSDGQ---------------TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWS 208
V ++S+G+ T + + ++++++ A+ V + DG V +
Sbjct: 211 GVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCF---DVALMDDGSVVLA 267
Query: 209 DS 210
Sbjct: 268 SK 269
Score = 29.8 bits (68), Expect = 0.95
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 17/112 (15%)
Query: 113 RPLGIKFDKNGALHVADAYFGLYKVNV--TTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 170
P G+ + + VAD +++ + G+ + + D + PN V V +
Sbjct: 31 EPSGVAVNAQNDIIVAD--TNNHRIQIFDKEGRFKFQFGECGKRDS-QLLYPNRVAVVRN 87
Query: 171 GQ----TGQTE----QLISMD----TEIDGAKPQIPNSVTVDSDGMVYWSDS 210
T ++ Q+ + + Q P VTVD+ G + +
Sbjct: 88 SGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVEC 139
Score = 27.5 bits (62), Expect = 6.2
Identities = 27/168 (16%), Positives = 46/168 (27%), Gaps = 39/168 (23%)
Query: 162 PNSVTVDSDGQ----------------TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMV 205
P+ V V++ G+ + + D + PN V V +
Sbjct: 32 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDS-QLLYPNRVAVVRNSGD 90
Query: 206 YWSDSSTKYKSGLFEGLTSGSGRLIQYNPK-TKKNKVLIANLHFANGVELSADESFVIVA 264
S + ++ YN K L GV + +IV
Sbjct: 91 IIV------------TERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKG-RIIVV 137
Query: 265 ETMSSRVHRYYLKGPKQGKSEVFIDGLPG---LPDNVKRDSKGNFLVS 309
E RV + G + + G P+ V + K +S
Sbjct: 138 ECKVMRVIIFDQNG-----NVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 32.1 bits (72), Expect = 0.25
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 181 SMD----TEIDGAKPQIPNSVTVD-SDGMVYWSDSSTKY 214
++ + Q PN +T+D G +YW DS
Sbjct: 525 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 563
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 31.9 bits (71), Expect = 0.32
Identities = 31/213 (14%), Positives = 60/213 (28%), Gaps = 20/213 (9%)
Query: 99 GKDCYGFKYEQQCGRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAK 158
+DC E C I D + + + N+ T + Q + D G +
Sbjct: 88 DQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILTQEDAQSV-YDASYYGGQ 146
Query: 159 PQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTV---------DSDGMVYWSD 209
+ + E+L D D + P + Y D
Sbjct: 147 CETVYNGEWRELRYDSTCERLYYGD---DEKYFRKPYNFLKYHFEALADTGISSEFY--D 201
Query: 210 SSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIA-----NLHFANGVELSADESFVIVA 264
++ S + + + G I P V + + F N + ++ F+
Sbjct: 202 NANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGVGVSHSQDTSFLNELNKYNEKKFIFTR 261
Query: 265 ETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDN 297
+ + ++ E + L LPD
Sbjct: 262 IFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQ 294
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 30.5 bits (68), Expect = 0.74
Identities = 18/159 (11%), Positives = 47/159 (29%), Gaps = 34/159 (21%)
Query: 159 PQIPNSVTVDSDG--------QTGQTEQLISMDTEIDGAKP----------QIPNSVTVD 200
P ++T+ DG Q+ + + P + D
Sbjct: 16 SLAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSD 75
Query: 201 SDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKK-------NKVLIANLHFANGVE 253
+G+V+ D+ + + +L+ ++ + + + F N +
Sbjct: 76 GNGIVWMLDNGNQ---------SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLA 126
Query: 254 LSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLP 292
+ +FV +++ + G + + G P
Sbjct: 127 VDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP 165
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 30.6 bits (68), Expect = 0.78
Identities = 29/182 (15%), Positives = 63/182 (34%), Gaps = 35/182 (19%)
Query: 112 GRPLGIKFD-KNGALHVAD-AYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 169
+ + F + + +D + + N+ E+++ T ++ P + VD
Sbjct: 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV--STGLES-----PGGLAVDW 125
Query: 170 DGQ----TGQTEQLISMDTEIDGAKPQI--------PNSVTVDS-DGMVYWSDSSTKYKS 216
T I + +DGA ++ P ++ + +G +YW+D +
Sbjct: 126 VHDKLYWTDSGTSRIEV-ANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR- 183
Query: 217 GLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYL 276
+ GSGR I + +L + NG+ + + + + R L
Sbjct: 184 -IEASSMDGSGRRIIADT----------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 232
Query: 277 KG 278
G
Sbjct: 233 DG 234
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy,
dimerization, image processing, computer-assist
molecular sequence DATA; 10.50A {Hepatitis e virus}
Length = 660
Score = 30.7 bits (68), Expect = 0.83
Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 1/106 (0%)
Query: 182 MDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKV 241
++T + V + G S ++T Y L + P +V
Sbjct: 261 VETSGVAEEEATSGLVMLCIHGSPVNSYTNTPYTGALGLLDFALELEFRNLTPGNTNTRV 320
Query: 242 LIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVF 287
+ + + AD + + T ++R + G E+
Sbjct: 321 SRYSSTARHRLRRGADGT-AELTTTAATRFMKDLYFTSTNGVGEIG 365
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 30.5 bits (68), Expect = 0.86
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 194 PNSVTVD-SDGMVYWSDSSTKY 214
PN +T+D + +YW D+
Sbjct: 248 PNGLTIDYAGRRMYWVDAKHHV 269
>2z1p_A ACE, collagen adhesin protein; cell adhesion; 2.50A {Enterococcus
faecalis}
Length = 348
Score = 29.8 bits (66), Expect = 1.3
Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 19/216 (8%)
Query: 72 KGDLYMGVDGGHILKLSGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADAY 131
G G+ S ++ F R + Y
Sbjct: 107 NGHFSFGIKTLIT-NSSQPNVIET--------DFGTATATQRLTIEGVTNTETGQIERDY 157
Query: 132 FGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKP 191
YKV G++ Q + ++ K + +++ +GQ S +I K
Sbjct: 158 PFFYKVGDLAGESNQ-VRWFLNVNLNKSDVTEDISIADRQGSGQQLNKESFTFDIVNDKE 216
Query: 192 ----QIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLH 247
+ + + +D+ + + + +++Y + +
Sbjct: 217 TKYISLAEFEQQGYGKIDFVTDNDFNLR--FYRDKARFTSFIVRY--TSTITEAGQHQAT 272
Query: 248 FANGVELSADESF-VIVAETMSSRVHRYYLKGPKQG 282
F N +++ + E +S+V +++G G
Sbjct: 273 FENSYDINYQLNNQDATNEKNTSQVKNVFVEGEASG 308
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 29.8 bits (66), Expect = 1.3
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 28/87 (32%)
Query: 149 SMD----TEIDGAKPQIPNSVTVD--------SDGQTGQTEQLISMDTEIDGAKPQI--- 193
++ + Q PN +T+D D + S+D ++G +
Sbjct: 231 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS---SID--VNGGNRKTILE 285
Query: 194 -------PNSVTVDSDGMVYWSDSSTK 213
P S+ V D V+W+D +
Sbjct: 286 DEKRLAHPFSLAVFED-KVFWTDIINE 311
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 28.9 bits (64), Expect = 2.5
Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 26/118 (22%)
Query: 112 GRPLGIKFD-KNGALHVADAYF--GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD 168
+P I D +G ++ D + + + +I+ + PN +T+D
Sbjct: 122 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI-------YWPNGLTLD 174
Query: 169 SDGQT-----GQTEQLISMDTEIDGAKPQI--------PNSVTVDSDGMVYWSDSSTK 213
+ Q + + + +DG Q P ++T+ D ++YW+D ST
Sbjct: 175 YEEQKLYWADAKLNFIHKSN--LDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTH 229
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA
damage, DNA repair, iron, M binding, oxidoreductase;
HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A*
2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A*
3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A*
3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Length = 211
Score = 28.0 bits (62), Expect = 3.8
Identities = 6/64 (9%), Positives = 17/64 (26%), Gaps = 4/64 (6%)
Query: 188 GAKPQIPNSVTV----DSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLI 243
G P++ + + D ++ G + Q+ + + +
Sbjct: 98 GYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKR 157
Query: 244 ANLH 247
L
Sbjct: 158 LLLE 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 28.2 bits (63), Expect = 3.9
Identities = 20/111 (18%), Positives = 31/111 (27%), Gaps = 16/111 (14%)
Query: 112 GRPLGIKFDKNGALHVADAYFG-----LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVT 166
G D G L +FG L+ N+++G S + A VT
Sbjct: 150 LPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVT 209
Query: 167 VDS-----------DGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVY 206
D + G E L + +P + DG +
Sbjct: 210 AGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLA 260
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 27.5 bits (61), Expect = 6.0
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 180 ISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKS 216
++ I + P V+S G V + S + +
Sbjct: 88 LAAYNAISKPEVLTPQLALVNSSGHVQYL-PSIRQRF 123
>2f68_X Collagen adhesin; beta barrel, domain SWAP, cell adhesion; 1.95A
{Staphylococcus aureus} PDB: 2f6a_A 1amx_A
Length = 313
Score = 27.5 bits (60), Expect = 6.0
Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 24/183 (13%)
Query: 72 KGDLYMGVDGGHILKLSGGKLVPV-VKLGKDCYGFKYEQQCGRPLGIKFDKNGALHVADA 130
G V G ++ + + + G + + + K G + D
Sbjct: 105 SGFAEFEVQGRNLTQTNTSDDKVATITSGNKSTNVTVHKSEAGTSSVFYYKTGDMLPEDT 164
Query: 131 YFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK 190
+ +N I+ K + +T+ Q GQ L +++ + G
Sbjct: 165 THVRWFLN---------------INNEKSYVSKDITIKDQIQGGQQLDLSTLNINVTGTH 209
Query: 191 PQIPNSVTVDSDGMVYWSDSSTKYKSG-------LFEGLTSGSGRLIQYNPK-TKKNKVL 242
+ + +D + S + + +G S + I Y K T + +
Sbjct: 210 SNYYSGQSAITDFEKAFPGSKITVDNTKNTIDVTIPQGYGSYNSFSINYKTKITNEQQKE 269
Query: 243 IAN 245
N
Sbjct: 270 FVN 272
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 27.5 bits (62), Expect = 6.5
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 91 KLVPVVKLGKDCYGFKYEQQCGRPLGIKFDKNGA 124
++V + C CG+ + + F K G
Sbjct: 548 RIVVDFPTNQKC-------SCGKEMRLSFGKYGF 574
>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A
{Salmonella typhimurium} SCOP: b.152.1.1 PDB: 2bgy_A
2bgz_A
Length = 299
Score = 27.3 bits (60), Expect = 6.8
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 162 PNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVY 206
+ T + T +G KP S +++DG V
Sbjct: 186 ATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVV 230
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 27.4 bits (60), Expect = 7.3
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 28/107 (26%)
Query: 137 VNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNS 196
VT + + + G +D G +++ TE++G PQIP
Sbjct: 138 AEVTFLGHPGKLVLKQQFSG----------IDEHGH-------LTISTELEGRVPQIPYG 180
Query: 197 VTVD----------SDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYN 233
+V S ++ S S+ +Y + + Y
Sbjct: 181 ASVHIEPYTELYHYSSSVIT-SSSTREYTVMEPDQDGAAPSHTHIYQ 226
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 27.4 bits (61), Expect = 7.3
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 24/110 (21%)
Query: 163 NSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG-MVYWSDSSTKYKSGLFEG 221
++++V D + + I + + P + DG VY +++
Sbjct: 12 DNISV-IDVTSNKVTATIPVGSN--------PMGAVISPDGTKVYVANA----------- 51
Query: 222 LTSGSGRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRV 271
S + + T + GV +S D V V SS +
Sbjct: 52 ---HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTL 98
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 8.0
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 44 KLALNEKLNNAEKLFENEIHGPEAVVK 70
K AL +KL + KL+ ++ P +K
Sbjct: 19 KQAL-KKLQASLKLYADD-SAPALAIK 43
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 27.3 bits (60), Expect = 9.0
Identities = 15/65 (23%), Positives = 19/65 (29%), Gaps = 14/65 (21%)
Query: 151 DTEIDG------AKPQIPNSVTVDSDGQTGQTEQLISMDTEIDGAK------PQIPNSVT 198
D + DG P I N+ D D D + DG + N
Sbjct: 316 DIDDDGHQNNQDNCPYISNANQADHDRDGQGDA--CDPDDDNDGVPDDRDNCRLVFNPDQ 373
Query: 199 VDSDG 203
D DG
Sbjct: 374 EDLDG 378
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor,
universal joint, bacterial flagellum, motor protein;
7.10A {Salmonella enterica subsp}
Length = 402
Score = 27.2 bits (60), Expect = 9.5
Identities = 10/49 (20%), Positives = 17/49 (34%)
Query: 162 PNSVTVDSDGQTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS 210
+ T + T +G KP S +++DG V + S
Sbjct: 256 ATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVGNYS 304
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.136 0.396
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,116,860
Number of extensions: 313311
Number of successful extensions: 623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 87
Length of query: 337
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 243
Effective length of database: 4,077,219
Effective search space: 990764217
Effective search space used: 990764217
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.0 bits)