RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4771
(337 letters)
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 340
Score = 86.7 bits (214), Expect = 8e-20
Identities = 37/282 (13%), Positives = 81/282 (28%), Gaps = 27/282 (9%)
Query: 56 KLFENEIHGPEAVVKHKGDLYMGVDGGHILKLSGGKLVPVVKLGKDC----YGFKYEQQC 111
L + +G E DL + +G + SG K ++ D ++
Sbjct: 28 NLVKGIDNGSE-------DLEILPNGLAFI-SSGLKYPGIMSFDPDKSGKILLMDLNEKE 79
Query: 112 GRPLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG 171
++ N + F + ++ + + G+ + + +
Sbjct: 80 PAVSELEIIGNTLD---ISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK 136
Query: 172 QTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTS--GSGRL 229
+ I N + Y ++ + + G
Sbjct: 137 S-------LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHY-FIDPYLKSWEMHLGLAWS 188
Query: 230 IQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFID 289
+V+ FANG+ +S D +V +AE ++ ++H Y +
Sbjct: 189 FVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS 248
Query: 290 GLPGLPDNVKRDSKGNFLVSLVCPVEQPSEQAGNIRDPAGAQ 331
L DN+ D L + C + +P G++
Sbjct: 249 -FDTLVDNISVDPVTGDLW-VGCHPNGMRIFFYDAENPPGSE 288
Score = 25.8 bits (56), Expect = 7.0
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 6 NFFISVVVGIVAITFYPGLEPEIDFTAFEVAPPRPLEGKLALNEKLNNAEKLFENE---I 62
N + V G + + +P + A L + L+E+ ++ +
Sbjct: 255 NISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPK-VTVVYAENGTVL 313
Query: 63 HGPEAVVKHKGDLYMG 78
G +KG L +G
Sbjct: 314 QGSTVAAVYKGKLLIG 329
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 43.5 bits (101), Expect = 2e-05
Identities = 44/208 (21%), Positives = 81/208 (38%), Gaps = 21/208 (10%)
Query: 116 GIKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQ-- 172
G+ FD+ G L + D + G ++K+N T + ++ P ++ + DG+
Sbjct: 44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF---VSHKAN----PAAIKIHKDGRLF 96
Query: 173 ------TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGS 226
T + + D + I + T + + Y + T+
Sbjct: 97 VCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL 156
Query: 227 GRLIQYNPKTKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGP-----KQ 281
G + +P + +I N+ ANG+ LS DE + V ET ++R+HR L+
Sbjct: 157 GGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF 216
Query: 282 GKSEVFIDGLPGLPDNVKRDSKGNFLVS 309
G + + PD+ DS N V+
Sbjct: 217 GATIPYYFTGHEGPDSCCIDSDDNLYVA 244
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 36.8 bits (84), Expect = 0.002
Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 180 ISMDT-EIDGAKPQIPNSVTVDSD---GMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPK 235
+++D E P + N V +D++ +YWSD S + S +L + +
Sbjct: 15 MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR---------MICSTQLDRAHGV 65
Query: 236 TKKNKVLIANLHFANGVELSADESFVIVAETMSSRVHRYYLKGPKQ 281
+ + V+ ++ +G+ + S + +++ V KG K+
Sbjct: 66 SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR 111
Score = 27.2 bits (59), Expect = 2.6
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 16/60 (26%)
Query: 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKN-KVLIANLHFANGV 252
P S+ V + V+W+D + N T + +L NL +
Sbjct: 211 PFSLAVF-EDKVFWTDIIN--------------EAIFSANRLTGSDVNLLAENLLSPEDM 255
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 33.5 bits (75), Expect = 0.030
Identities = 9/118 (7%), Positives = 31/118 (26%), Gaps = 16/118 (13%)
Query: 191 PQIPNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIANLHFAN 250
++ DG ++ ++ G ++ P + ++ +
Sbjct: 27 NTFLENLASAPDGTIFVTN--------------HEVGEIVSITPDGNQ-QIHATVEGKVS 71
Query: 251 GVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLV 308
G+ +++ V + + L + + + S +L
Sbjct: 72 GLAFTSNGDLV-ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLT 128
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 260
Score = 32.5 bits (72), Expect = 0.062
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 194 PNSVTVDSDGMVYWSDS 210
P +V VDSD VY +D
Sbjct: 226 PLAVAVDSDRTVYVADR 242
Score = 31.0 bits (68), Expect = 0.16
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 114 PLGIKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQ 172
P G+ D G ++V V + TG T + + P + VD G
Sbjct: 16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQ-----PQGLAVDGAGT 69
Score = 30.2 bits (66), Expect = 0.26
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 14/83 (16%)
Query: 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVLIAN-LHFANGV 252
P+ V VDS G VY + GR+++ + VL N L+ G+
Sbjct: 16 PSGVAVDSAGNVYVTSEGM-------------YGRVVKLATGSTGTTVLPFNGLYQPQGL 62
Query: 253 ELSADESFVIVAETMSSRVHRYY 275
+ + +
Sbjct: 63 AVDGAGTVYVTDFNNRVVTLAAG 85
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase
(phosphotriesterase, DFP) {Squid (Loligo vulgaris)
[TaxId: 6622]}
Length = 314
Score = 32.3 bits (72), Expect = 0.077
Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 14/122 (11%)
Query: 194 PNSVTVDSDGMVYWSDSSTKYKSGLFEGLTSGSGRLIQYNPKTKKNKVL-----IANLHF 248
D +G Y + +G +++ + KT K V+
Sbjct: 20 AEGPVFDKNGDFYIVAPEVEVNGKP-------AGEILRIDLKTGKKTVICKPEVNGYGGI 72
Query: 249 ANGVELSADESFVIVAETMSSRVHRYYLKGPKQGKSEVFIDGLP-GLPDNVKRDSKGNFL 307
G + D + + VA M + G + ++ +G ++ D +GN
Sbjct: 73 PAGCQCDRDANQLFVA-DMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLW 131
Query: 308 VS 309
++
Sbjct: 132 IT 133
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Length = 263
Score = 29.8 bits (66), Expect = 0.43
Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 20/139 (14%)
Query: 88 SGGKLVPVVKLGKDCYGFKYEQQCGRPLGIKFD-KNGALHVADAYFGLYKVNVTTGQTEQ 146
S + V K+ ++ P GI D G L+ D K+ +
Sbjct: 98 SQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157
Query: 147 LISMDTEIDGAKPQIPNSVTVDSDGQT-----GQTEQLISMDTEIDGAKPQI-------P 194
+ + G +PN +T D+ T + ++ + P
Sbjct: 158 RRILAQDNLG----LPNGLTFDAFSSQLCWVDAGTHRAECLN--PAQPGRRKVLEGLQYP 211
Query: 195 NSVTVDSDGMVYWSDSSTK 213
+VT +Y++D T
Sbjct: 212 FAVTSY-GKNLYYTDWKTN 229
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 279
Score = 28.8 bits (63), Expect = 0.93
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 194 PNSVTVDSDGMVYWSDSSTK 213
P+ V V++ + +D++
Sbjct: 25 PSGVAVNAQNDIIVADTNNH 44
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl
transferase 2, TUTase 2, RET2 {Trypanosoma brucei
[TaxId: 5691]}
Length = 259
Score = 28.0 bits (62), Expect = 1.7
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 9/55 (16%)
Query: 27 EIDFTAFEVAPPRPLEGKLALNEKLNNAEKLFENE---------IHGPEAVVKHK 72
++D P E + +KL K + VVK +
Sbjct: 68 DLDLACMFDDPYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLR 122
>d1rwha2 b.24.1.1 (A:645-757) Chondroitinase AC {Arthrobacter
aurescens [TaxId: 43663]}
Length = 113
Score = 25.9 bits (57), Expect = 3.3
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 117 IKFDKNGA-LHVADAYFGLYKVNVT-TGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTG 174
N L V++ + +T T + G +++T+D+ G +G
Sbjct: 45 FSRHGNELSLAVSEPTQKAAGLTLTLPEGTWSSVLEGAGTLGTDADGRSTLTLDTTGLSG 104
Query: 175 QT 176
+T
Sbjct: 105 KT 106
>d1r0da_ a.216.1.1 (A:) Huntingtin interacting protein 12 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 25.2 bits (55), Expect = 9.7
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 136 KVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGQTGQTEQLIS 181
KV + TG+ E+LI EI + Q+ + V ++ + +L
Sbjct: 120 KVVLHTGKYEELIVCSHEIAASTAQLVAASKVKANKHSPHLSRLQE 165
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.136 0.396
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,222,856
Number of extensions: 56763
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 18
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)