BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4772
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|A Chain A, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|A Chain A, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|A Chain A, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2H6G|A Chain A, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
pdb|2H6H|A Chain A, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
pdb|2H6I|A Chain A, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
pdb|2IEJ|A Chain A, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
Length = 382
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +LK+L KD
Sbjct: 89 QIIYSDKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 147
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
LH+E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 218 WVI 220
WVI
Sbjct: 208 WVI 210
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QRYFVI++TT + V++RE+ Y + I++
Sbjct: 211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270
Query: 103 PKNESPWNYLRGAVVNAG 120
P NES WNYL+G + + G
Sbjct: 271 PHNESAWNYLKGILQDRG 288
>pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|3E37|A Chain A, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 379
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +LK+L KD
Sbjct: 89 QIIYSDKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 147
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
LH+E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 218 WVI 220
WVI
Sbjct: 208 WVI 210
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QRYFVI++TT + V++RE+ Y + I++
Sbjct: 211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270
Query: 103 PKNESPWNYLRGAVVNAG 120
P NES WNYL+G + + G
Sbjct: 271 PHNESAWNYLKGILQDRG 288
>pdb|1N95|A Chain A, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|A Chain A, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|A Chain A, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 315
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +L++L KD
Sbjct: 35 QIIYSEKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKD 93
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
L +E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 94 LQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQ 153
Query: 218 WVI 220
WVI
Sbjct: 154 WVI 156
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QR+FVI++TT ++ V++RE+ Y + I++
Sbjct: 157 QEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLV 216
Query: 103 PKNESPWNYLRGAVVNAG 120
P NES WNYL+G + + G
Sbjct: 217 PHNESAWNYLKGILQDRG 234
>pdb|2BED|A Chain A, Structure Of Fpt Bound To Inhibitor Sch207736
Length = 313
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +L++L KD
Sbjct: 36 QIIYSEKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKD 94
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
L +E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 95 LQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQ 154
Query: 218 WVI 220
WVI
Sbjct: 155 WVI 157
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QR+FVI++TT ++ V++RE+ Y + I++
Sbjct: 158 QEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLV 217
Query: 103 PKNESPWNYLRGAVVNAG 120
P NES WNYL+G + + G
Sbjct: 218 PHNESAWNYLKGILQDRG 235
>pdb|1NL4|A Chain A, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
Length = 312
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +L++L KD
Sbjct: 35 QIIYSEKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKD 93
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
L +E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 94 LQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQ 153
Query: 218 WVI 220
WVI
Sbjct: 154 WVI 156
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QR+FVI++TT ++ V++RE+ Y + I++
Sbjct: 157 QEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLV 216
Query: 103 PKNESPWNYLRGAVVNAG 120
P NES WNYL+G + + G
Sbjct: 217 PHNESAWNYLKGILQDRG 234
>pdb|2R2L|A Chain A, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 315
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +L++L KD
Sbjct: 36 QIIYSEKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKD 94
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
L +E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 95 LQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQ 154
Query: 218 WVI 220
WVI
Sbjct: 155 WVI 157
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QR+FVI++TT ++ V++RE+ Y + I++
Sbjct: 158 QEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLV 217
Query: 103 PKNESPWNYLRGAVVNAG 120
P NES WNYL+G + + G
Sbjct: 218 PHNESAWNYLKGILQDRG 235
>pdb|1O5M|A Chain A, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|2ZIR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
pdb|3KSL|A Chain A, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|A Chain A, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 377
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +L++L KD
Sbjct: 89 QIIYSEKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKD 147
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
L +E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 148 LQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 218 WVI 220
WVI
Sbjct: 208 WVI 210
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QR+FVI++TT ++ V++RE+ Y + I++
Sbjct: 211 QEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLV 270
Query: 103 PKNESPWNYLRGAVVNAG 120
P NES WNYL+G + + G
Sbjct: 271 PHNESAWNYLKGILQDRG 288
>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid
Length = 333
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +L++L KD
Sbjct: 45 QIIYSEKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKD 103
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
L +E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 104 LQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQ 163
Query: 218 WVI 220
WVI
Sbjct: 164 WVI 166
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QR+FVI++TT ++ V++RE+ Y + I++
Sbjct: 167 QEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLV 226
Query: 103 PKNESPWNYLRGAVVNAG 120
P NES WNYL+G + + G
Sbjct: 227 PHNESAWNYLKGILQDRG 244
>pdb|1O1R|A Chain A, Structure Of Fpt Bound To Ggpp
pdb|1O1S|A Chain A, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|A Chain A, Structure Of Fpt Bound To The Cvim-Fpp Product
Length = 380
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +L++L KD
Sbjct: 92 QIIYSEKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKD 150
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
L +E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 151 LQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQ 210
Query: 218 WVI 220
WVI
Sbjct: 211 WVI 213
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QR+FVI++TT ++ V++RE+ Y + I++
Sbjct: 214 QEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLV 273
Query: 103 PKNESPWNYLRGAVVNAG 120
P NES WNYL+G + + G
Sbjct: 274 PHNESAWNYLKGILQDRG 291
>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
pdb|1N94|A Chain A, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|A Chain A, Farnesyl Transferase Structure Of Jansen Compound
Length = 315
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +L++L KD
Sbjct: 35 QIIYSEKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKD 93
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
L +E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 94 LQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQ 153
Query: 218 WVI 220
WVI
Sbjct: 154 WVI 156
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QR+FVI++TT ++ V++RE+ Y + I++
Sbjct: 157 QEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLV 216
Query: 103 PKNESPWNYLRGAVVNAG 120
P NES WNYL+G + + G
Sbjct: 217 PHNESAWNYLKGILQDRG 234
>pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|A Chain A, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1D8D|A Chain A, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|A Chain A, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1N4P|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1SA5|A Chain A, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1S64|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TN7|A Chain A, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|A Chain A, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|1TNB|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|3DPY|A Chain A, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3EU5|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|3EUV|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
pdb|4GTM|A Chain A, Ftase In Complex With Bms Analogue 11
pdb|4GTO|A Chain A, Ftase In Complex With Bms Analogue 14
pdb|4GTP|A Chain A, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|A Chain A, Ftase In Complex With Bms Analogue 12
pdb|4GTR|A Chain A, Ftase In Complex With Bms Analogue 13
Length = 377
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +L++L KD
Sbjct: 89 QIIYSEKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKD 147
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
L +E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 148 LQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 218 WVI 220
WVI
Sbjct: 208 WVI 210
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QR+FVI++TT ++ V++RE+ Y + I++
Sbjct: 211 QEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLV 270
Query: 103 PKNESPWNYLRGAVVNAG 120
P NES WNYL+G + + G
Sbjct: 271 PHNESAWNYLKGILQDRG 288
>pdb|3PZ4|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 379
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +L++L KD
Sbjct: 91 QIIYSEKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKD 149
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
L +E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 150 LQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQ 209
Query: 218 WVI 220
WVI
Sbjct: 210 WVI 212
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QR+FVI++TT ++ V++RE+ Y + I++
Sbjct: 213 QEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLV 272
Query: 103 PKNESPWNYLRGAVVNAG 120
P NES WNYL+G + + G
Sbjct: 273 PHNESAWNYLKGILQDRG 290
>pdb|3SFX|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tipifarnib
pdb|3SFY|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Ethylenediamine Inhibitor 2
Length = 349
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 93/209 (44%), Gaps = 62/209 (29%)
Query: 13 WVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQ 72
++ R W D++PI QDDGP PVV I ++S+E
Sbjct: 19 YIPMSQRRSWADVKPIMQDDGPNPVVPI-------MYSEE-------------------- 51
Query: 73 RYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTAD 132
+ +DY R A+ EKSERAL LT
Sbjct: 52 ---------------YKDAMDYFR------------------AIAAKEEKSERALELTEI 78
Query: 133 AITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG-- 190
+ MNPA+YTVWQYR +L +LNK L EL+ + E +N K+YQVW HR ++++ +
Sbjct: 79 IVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ 138
Query: 191 EPDEELALTAAILAQDAKNYHAWQHRQWV 219
+P E+ L D KNYH W + W+
Sbjct: 139 DPVSEIEYIHGSLLPDPKNYHTWAYLHWL 167
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 50 SDELSYIEGLISHDVRNNSAWTQRYF--VINHTTQFTPEVIQREIDYCRDKIQIAPKNES 107
EL + ++ D RNNSAW R++ V + + +Q E+ Y I + P N S
Sbjct: 183 GSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS 242
Query: 108 PWNYLRGAV 116
WNYLRG +
Sbjct: 243 AWNYLRGFL 251
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 52 ELSYIEGLISHDVRNNSAWTQRYFVINHTT---QFTPEVIQREIDYCRDKIQIAPKNESP 108
E+ YI G + D +N W +++ +H + + + E+D+C + +++ +N S
Sbjct: 143 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA 202
Query: 109 WN---YLRGAVVNAGEKSERAL----ALTADAITMNPANYTVWQYRREILKALNKDL 158
W YLR + A E S R+L +I + P N + W Y R LK + L
Sbjct: 203 WGWRWYLRVSRPGA-ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPL 258
>pdb|3Q73|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase, Apo
Enzyme
pdb|3Q75|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tkcvvm Peptide
pdb|3Q78|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fspp And Ddptasacniq Peptide
pdb|3Q79|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Farnesyl-Ddptasacniq Product
pdb|3Q7A|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And L-778,123
pdb|3Q7F|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And Ethylenediamine Inhibitor 1
Length = 349
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Query: 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKI 169
+Y R A+ EKSERAL LT + MNPA+YTVWQYR +L +LNK L EL+ + E
Sbjct: 58 DYFR-AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA 116
Query: 170 KENSKNYQVWRHRQIIVEWMG--EPDEELALTAAILAQDAKNYHAWQHRQWV 219
+N K+YQVW HR ++++ + +P E+ L D KNYH W + W+
Sbjct: 117 VQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWL 168
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 34/213 (15%)
Query: 13 WVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQ 72
++ R W D++PI QDDGP PVV I YS++ + D + Y + + + ++
Sbjct: 20 YIPMSQRRSWADVKPIMQDDGPNPVVPIMYSEE---YKDAMDYFRAIAAKEEKS------ 70
Query: 73 RYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTAD 132
+R ++ +++ P + + W Y + + + E L L +
Sbjct: 71 ----------------ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNE 114
Query: 133 AITMNPANYTVWQYRREILKALN-KDLHQELKYIGEKIKENSKNYQVWRHRQII---VEW 188
N +Y VW +R +L ++ +D E++YI + + KNY W + +
Sbjct: 115 FAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFST 174
Query: 189 MGEPDE-----ELALTAAILAQDAKNYHAWQHR 216
+G E EL +L D +N AW R
Sbjct: 175 LGRISEAQWGSELDWCNEMLRVDGRNNSAWGWR 207
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 50 SDELSYIEGLISHDVRNNSAWTQRYF--VINHTTQFTPEVIQREIDYCRDKIQIAPKNES 107
EL + ++ D RNNSAW R++ V + + +Q E+ Y I + P N S
Sbjct: 184 GSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS 243
Query: 108 PWNYLRGAV 116
WNYLRG +
Sbjct: 244 AWNYLRGFL 252
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 52 ELSYIEGLISHDVRNNSAWTQRYFVINHTT---QFTPEVIQREIDYCRDKIQIAPKNESP 108
E+ YI G + D +N W +++ +H + + + E+D+C + +++ +N S
Sbjct: 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA 203
Query: 109 WN---YLRGAVVNAGEKSERAL----ALTADAITMNPANYTVWQYRREILKALNKDL 158
W YLR + A E S R+L +I + P N + W Y R LK + L
Sbjct: 204 WGWRWYLRVSRPGA-ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPL 259
>pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 306
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Query: 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKAL-NKDLHQELKYIGEKIK 170
L A++ A E SERAL +T I ++YT+W YR ILK L N++L+ EL + E
Sbjct: 38 LLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL 97
Query: 171 ENSKNYQVWRHRQIIVEWMGE-------PDEELALTAAILAQDAKNYHAWQHRQWVINLL 223
+N KNYQ+W +RQ+I+ + E P E + A+L+ D KN+H W +R+W+++
Sbjct: 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTF 157
Query: 224 D 224
D
Sbjct: 158 D 158
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 52 ELSYIEGLISHDVRNNSAWTQRYFVINHTTQF-TPEVIQREIDYCRDKIQIAPKNESPWN 110
ELS+++ +I D++NNSAW+ R+F++ T I E++Y +DKI P+N S WN
Sbjct: 165 ELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWN 224
Query: 111 YLRG-------AVVNAGEKSERALALTADAITMNPA 139
YL G ++ E S + + L D +T + A
Sbjct: 225 YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFA 260
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQ-----FTPEVIQREIDYCRDKIQI 101
NL+ DEL + E + + +N W R +I + F P RE D +
Sbjct: 84 NLY-DELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP---YREFDILEAMLSS 139
Query: 102 APKNESPWNYLRGAVVNAGE--KSERALALTADAITMNPANYTVWQYRREIL-----KAL 154
PKN W+Y R +V+ + + L+ I + N + W +R +L A
Sbjct: 140 DPKNHHVWSY-RKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT 198
Query: 155 NKDLHQELKYIGEKIKENSKNYQVWRH 181
+ + +EL Y+ +KI + +N W +
Sbjct: 199 DNTIDEELNYVKDKIVKCPQNPSTWNY 225
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 119 AGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKYIGEKI 169
AGE E L LT+ + NP T+W RRE+L+ L + + EL ++ +
Sbjct: 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 100
Query: 170 KENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQW 218
+ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++
Sbjct: 101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRF 151
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 20/174 (11%)
Query: 68 SAWTQRYFVINHT-TQFTPE----VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122
+ W R V+ H T+ +PE +++ E+ + +++ PK+ W++ + E
Sbjct: 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123
Query: 123 S-ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181
+ R L L A + + N+ W YRR + +EL + I N NY W +
Sbjct: 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183
Query: 182 RQIIVEWM-GEPD-------------EELALTAAILAQDAKNYHAWQHRQWVIN 221
R ++ + +PD +EL L D + AW + +W++
Sbjct: 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVI-QREIDYCRDKIQIAPKNE 106
L EL ++E + + ++ W R ++++ PE RE++ C ++ +N
Sbjct: 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL----PEPNWARELELCARFLEADERNF 143
Query: 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN 155
W+Y R A LA T IT N +NY+ W YR +L L+
Sbjct: 144 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 119 AGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKYIGEKI 169
AGE E L LT+ + NP T+W RRE+L+ L + + EL ++ +
Sbjct: 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 100
Query: 170 KENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQW 218
+ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++
Sbjct: 101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRF 151
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 20/174 (11%)
Query: 68 SAWTQRYFVINHT-TQFTPE----VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122
+ W R V+ H T+ +PE +++ E+ + +++ PK+ W++ + E
Sbjct: 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123
Query: 123 S-ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181
+ R L L A + + N+ W YRR + +EL + I N NY W +
Sbjct: 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183
Query: 182 RQIIVEWM-GEPD-------------EELALTAAILAQDAKNYHAWQHRQWVIN 221
R ++ + +PD +EL L D + AW + +W++
Sbjct: 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVI-QREIDYCRDKIQIAPKNE 106
L EL ++E + + ++ W R ++++ PE RE++ C ++ +N
Sbjct: 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL----PEPNWARELELCARFLEADERNF 143
Query: 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN 155
W+Y R A LA T IT N +NY+ W YR +L L+
Sbjct: 144 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192
>pdb|4EHM|A Chain A, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 119 AGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKYIGEKI 169
AGE E L LT+ + NP T+W RRE+L+ L + + EL ++ +
Sbjct: 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 100
Query: 170 KENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQW 218
+ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++
Sbjct: 101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRF 151
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 20/174 (11%)
Query: 68 SAWTQRYFVINHT-TQFTPE----VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122
+ W R V+ H T+ +PE +++ E+ + +++ PK+ W++ + E
Sbjct: 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123
Query: 123 S-ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181
+ R L L A + + N+ W YRR + +EL + I N NY W +
Sbjct: 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183
Query: 182 RQIIVEWM-GEPD-------------EELALTAAILAQDAKNYHAWQHRQWVIN 221
R ++ + +PD +EL L D + AW + +W++
Sbjct: 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVI-QREIDYCRDKIQIAPKNE 106
L EL ++E + + ++ W R ++++ PE RE++ C ++ +N
Sbjct: 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL----PEPNWARELELCARFLEADERNF 143
Query: 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN 155
W+Y R A LA T IT N +NY+ W YR +L L+
Sbjct: 144 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192
>pdb|3DSS|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 119 AGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKYIGEKI 169
AGE E L LT+ + NP T+W RRE+L+ L + + EL ++ +
Sbjct: 42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 101
Query: 170 KENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQW 218
+ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++
Sbjct: 102 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRF 152
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 20/174 (11%)
Query: 68 SAWTQRYFVINHT-TQFTPE----VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122
+ W R V+ H T+ +PE +++ E+ + +++ PK+ W++ + E
Sbjct: 65 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 124
Query: 123 S-ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181
+ R L L A + + N+ W YRR + +EL + I N NY W +
Sbjct: 125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 184
Query: 182 RQIIVEWM-GEPD-------------EELALTAAILAQDAKNYHAWQHRQWVIN 221
R ++ + +PD +EL L D + AW + +W++
Sbjct: 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 238
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVI-QREIDYCRDKIQIAPKNE 106
L EL ++E + + ++ W R ++++ PE RE++ C ++ +N
Sbjct: 89 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL----PEPNWARELELCARFLEADERNF 144
Query: 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN 155
W+Y R A LA T IT N +NY+ W YR +L L+
Sbjct: 145 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 193
>pdb|3C72|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
Length = 334
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 119 AGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKYIGEKI 169
AGE E L LT+ + NP T+W RRE+L+ L + + EL ++ +
Sbjct: 45 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 104
Query: 170 KENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQW 218
+ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++
Sbjct: 105 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRF 155
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 20/174 (11%)
Query: 68 SAWTQRYFVINHT-TQFTPE----VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122
+ W R V+ H T+ +PE +++ E+ + +++ PK+ W++ + E
Sbjct: 68 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 127
Query: 123 S-ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181
+ R L L A + + N+ W YRR + +EL + I N NY W +
Sbjct: 128 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 187
Query: 182 RQIIVEWM-GEPD-------------EELALTAAILAQDAKNYHAWQHRQWVIN 221
R ++ + +PD +EL L D + AW + +W++
Sbjct: 188 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 241
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVI-QREIDYCRDKIQIAPKNE 106
L EL ++E + + ++ W R ++++ PE RE++ C ++ +N
Sbjct: 92 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL----PEPNWARELELCARFLEADERNF 147
Query: 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN 155
W+Y R A LA T IT N +NY+ W YR +L L+
Sbjct: 148 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 196
>pdb|3PZ1|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
Length = 332
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 119 AGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKYIGEKI 169
AGE E L LT+ + NP T+W RRE+L+ L + + EL ++ +
Sbjct: 43 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 102
Query: 170 KENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQW 218
+ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++
Sbjct: 103 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRF 153
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 20/174 (11%)
Query: 68 SAWTQRYFVINHT-TQFTPE----VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122
+ W R V+ H T+ +PE +++ E+ + +++ PK+ W++ + E
Sbjct: 66 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 125
Query: 123 S-ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181
+ R L L A + + N+ W YRR + +EL + I N NY W +
Sbjct: 126 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 185
Query: 182 RQIIVEWM-GEPD-------------EELALTAAILAQDAKNYHAWQHRQWVIN 221
R ++ + +PD +EL L D + AW + +W++
Sbjct: 186 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 239
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVI-QREIDYCRDKIQIAPKNE 106
L EL ++E + + ++ W R ++++ PE RE++ C ++ +N
Sbjct: 90 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL----PEPNWARELELCARFLEADERNF 145
Query: 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN 155
W+Y R A LA T IT N +NY+ W YR +L L+
Sbjct: 146 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 194
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148
Q+ I+Y + +++ P N S W L A G+ ++A+ A+ ++P N W YRR
Sbjct: 26 QKAIEYYQKALELDPNNASAWYNLGNAYYKQGD-YQKAIEYYQKALELDPNNAKAW-YRR 83
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 149 EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEE 195
E+ KA + +GEKI KNY + H V ++G +EE
Sbjct: 360 EMFKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYEVSFLGMGEEE 406
>pdb|2J3X|A Chain A, Crystal Structure Of The Enzymatic Component C2-I Of The
C2-Toxin From Clostridium Botulinum At Ph 3.0
(Mut-S361r)
Length = 431
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR--EILKALNKDLHQELKYIGE 167
+YLR V ++ + + L + A+++ P T+ YRR I L D + K GE
Sbjct: 262 SYLRNNRVPNNDELNKKIELISSALSVKPIPQTLIAYRRVDGIPFDLPSDFSFDKKENGE 321
Query: 168 KIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINL 222
I + K + I +W G+ E L+ ++ L ++ R+++ L
Sbjct: 322 IIADKQK------LNEFIDKWTGKEIENLSFSSTSLKSTP---SSFSKRRFIFRL 367
>pdb|2J3V|A Chain A, Crystal Structure Of The Enzymatic Component C2-I Of The
C2- Toxin From Clostridium Botulinum At Ph 3.0
Length = 431
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR--EILKALNKDLHQELKYIGE 167
+YLR V ++ + + L + A+++ P T+ YRR I L D + K GE
Sbjct: 262 SYLRNNRVPNNDELNKKIELISSALSVKPIPQTLIAYRRVDGIPFDLPSDFSFDKKENGE 321
Query: 168 KIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211
I + K + I +W G+ E L+ ++ L ++
Sbjct: 322 IIADKQK------LNEFIDKWTGKEIENLSFSSTSLKSTPSSFS 359
>pdb|2J3Z|A Chain A, Crystal Structure Of The Enzymatic Component C2-i Of The
C2-toxin From Clostridium Botulinum At Ph 6.1
pdb|2J3Z|B Chain B, Crystal Structure Of The Enzymatic Component C2-i Of The
C2-toxin From Clostridium Botulinum At Ph 6.1
pdb|2J3Z|C Chain C, Crystal Structure Of The Enzymatic Component C2-i Of The
C2-toxin From Clostridium Botulinum At Ph 6.1
pdb|2J3Z|D Chain D, Crystal Structure Of The Enzymatic Component C2-i Of The
C2-toxin From Clostridium Botulinum At Ph 6.1
pdb|2J3Z|E Chain E, Crystal Structure Of The Enzymatic Component C2-i Of The
C2-toxin From Clostridium Botulinum At Ph 6.1
pdb|2J3Z|F Chain F, Crystal Structure Of The Enzymatic Component C2-i Of The
C2-toxin From Clostridium Botulinum At Ph 6.1
Length = 431
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR--EILKALNKDLHQELKYIGE 167
+YLR V ++ + + L + A+++ P T+ YRR I L D + K GE
Sbjct: 262 SYLRNNRVPNNDELNKKIELISSALSVKPIPQTLIAYRRVDGIPFDLPSDFSFDKKENGE 321
Query: 168 KIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211
I + K + I +W G+ E L+ ++ L ++
Sbjct: 322 IIADKQK------LNEFIDKWTGKEIENLSFSSTSLKSTPSSFS 359
>pdb|1PDJ|D Chain D, Fitting Of Gp27 Into Cryoem Reconstruction Of
Bacteriophage T4 Baseplate
pdb|1PDJ|E Chain E, Fitting Of Gp27 Into Cryoem Reconstruction Of
Bacteriophage T4 Baseplate
pdb|1PDJ|F Chain F, Fitting Of Gp27 Into Cryoem Reconstruction Of
Bacteriophage T4 Baseplate
pdb|1WTH|D Chain D, Crystal Structure Of Gp5-S351l Mutant And Gp27 Complex
pdb|2Z6B|D Chain D, Crystal Structure Analysis Of (Gp27-Gp5)3 Conjugated With
Fe(Iii) Protoporphyrin
Length = 391
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 35 TPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHT 80
TP V I ++ N F E Y++ +I H++ NN++ T Y N T
Sbjct: 319 TPGVKIIFNDSKNQFKTEF-YVDEVI-HELSNNNSVTHLYMFTNAT 362
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,896,092
Number of Sequences: 62578
Number of extensions: 324918
Number of successful extensions: 1059
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 762
Number of HSP's gapped (non-prelim): 140
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)