BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4772
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29702|FNTA_BOVIN Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Bos taurus GN=FNTA PE=2 SV=2
Length = 375
Score = 147 bits (370), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 90/123 (73%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K + ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +LK+L KD
Sbjct: 85 QIIYSEKFQDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 143
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
LH+E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 144 LHEEMNYISAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILTQDAKNYHAWQHRQ 203
Query: 218 WVI 220
WVI
Sbjct: 204 WVI 206
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QRYFVI++TT + +++RE+ Y + I++
Sbjct: 207 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAILEREVQYTLEMIKLV 266
Query: 103 PKNESPWNYLRGAVVNAG 120
P NES WNYL+G + + G
Sbjct: 267 PHNESAWNYLKGILQDRG 284
>sp|P49354|FNTA_HUMAN Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Homo sapiens GN=FNTA PE=1 SV=1
Length = 379
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +LK+L KD
Sbjct: 89 QIIYSDKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 147
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
LH+E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 218 WVI 220
WVI
Sbjct: 208 WVI 210
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QRYFVI++TT + V++RE+ Y + I++
Sbjct: 211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270
Query: 103 PKNESPWNYLRGAVVNAG 120
P NES WNYL+G + + G
Sbjct: 271 PHNESAWNYLKGILQDRG 288
>sp|Q61239|FNTA_MOUSE Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Mus musculus GN=Fnta PE=1 SV=1
Length = 377
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +L++L KD
Sbjct: 89 QIIYSEKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKD 147
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
L +E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL+QDAKNYHAWQHRQ
Sbjct: 148 LQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILSQDAKNYHAWQHRQ 207
Query: 218 WVI 220
WVI
Sbjct: 208 WVI 210
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QR+FVI++TT ++ V++RE+ Y + I++
Sbjct: 211 QEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLV 270
Query: 103 PKNESPWNYLRGAVVNAG 120
P NES WNYL+G + + G
Sbjct: 271 PHNESAWNYLKGILQDRG 288
>sp|Q04631|FNTA_RAT Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Rattus norvegicus GN=Fnta PE=1 SV=1
Length = 377
Score = 141 bits (355), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +L++L KD
Sbjct: 89 QIIYSEKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKD 147
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
L +E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 148 LQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 218 WVI 220
WVI
Sbjct: 208 WVI 210
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QR+FVI++TT ++ V++RE+ Y + I++
Sbjct: 211 QEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLV 270
Query: 103 PKNESPWNYLRGAVVNAG 120
P NES WNYL+G + + G
Sbjct: 271 PHNESAWNYLKGILQDRG 288
>sp|P93227|FNTA_SOLLC Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1
Length = 346
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 105/212 (49%), Gaps = 62/212 (29%)
Query: 14 VYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQR 73
+ +K R +W D++P+PQDDGP PVV
Sbjct: 11 IPFKERPDWADVKPVPQDDGPCPVVP---------------------------------- 36
Query: 74 YFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADA 133
I +T F+ +DY R A+ A E+S RAL LT +A
Sbjct: 37 ---IAYTEDFS-----ETMDYFR------------------AIYVADERSTRALQLTGEA 70
Query: 134 ITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEP- 192
I +NP NYTVWQ+RR +L+AL DL +ELK++ EN+KNYQ+W HR+ + E +G
Sbjct: 71 IQLNPGNYTVWQFRRVVLEALGVDLREELKFVDRIAGENTKNYQIWHHRRWLAEKLGADA 130
Query: 193 -DEELALTAAILAQDAKNYHAWQHRQWVINLL 223
EL T I +QDAKNYHAW HRQWV+ L
Sbjct: 131 VTNELEFTKKIFSQDAKNYHAWSHRQWVLQAL 162
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQR--EIDYCRDKIQI 101
Q + DEL+Y + L+ D+ NNSAW QRYFV+ + V R E++Y I+
Sbjct: 160 QALGGWEDELAYCQQLLEDDIYNNSAWNQRYFVVTRSPLLGGLVAMRELEVNYTVQAIRA 219
Query: 102 APKNESPWNYLRGAVVN 118
+P+NESPW YLRG N
Sbjct: 220 SPENESPWRYLRGLYKN 236
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 162 LKYIGEKIKENSKNYQVWRHRQIIVEWMG-EPDEELALTAAILAQDAKNYHAWQHRQWVI 220
L+ GE I+ N NY VW+ R++++E +G + EEL I ++ KNY W HR+W+
Sbjct: 64 LQLTGEAIQLNPGNYTVWQFRRVVLEALGVDLREELKFVDRIAGENTKNYQIWHHRRWLA 123
Query: 221 NLLDDD 226
L D
Sbjct: 124 EKLGAD 129
>sp|O24304|FNTA_PEA Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Pisum sativum GN=FTA PE=2 SV=1
Length = 333
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 101/204 (49%), Gaps = 62/204 (30%)
Query: 19 REEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVIN 78
R EW D+ PIPQDDGP+PVV I Y S+E S +
Sbjct: 18 RPEWSDVTPIPQDDGPSPVVPINY-------SEEFSEV---------------------- 48
Query: 79 HTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNP 138
+DY R AV A E S RALALTA+AI +N
Sbjct: 49 -------------MDYFR------------------AVYFAKELSSRALALTAEAIGLNA 77
Query: 139 ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEP--DEEL 196
NYTVW +RR +L++L DLH E +++ NSKNYQ+W HR+ + E +G + EL
Sbjct: 78 GNYTVWHFRRLLLESLKVDLHVEREFVERVASGNSKNYQIWHHRRWVAEKLGPEARNSEL 137
Query: 197 ALTAAILAQDAKNYHAWQHRQWVI 220
T IL+ DAK+YHAW HRQWV+
Sbjct: 138 EFTKKILSVDAKHYHAWSHRQWVL 161
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 70/168 (41%), Gaps = 27/168 (16%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQR--EIDYCRDKIQI 101
Q + DELSY L++ D+ NNSAW QRYFVI + R E+ + + I
Sbjct: 162 QNLGGWEDELSYCSELLAEDIFNNSAWNQRYFVITRSPVLGGLKAMRESEVLFTVEAIIS 221
Query: 102 APKNESPWNYLRGAV-------VNAGEKSERALA-----------------LTADAITMN 137
P+NES W YLRG VN + S L L+A I N
Sbjct: 222 YPENESSWRYLRGLFKDESTLYVNDAQVSSLCLKILKTKSNYLFALSTLLDLSASVIQPN 281
Query: 138 P-ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQI 184
+ R +IL + D+ + I E++ NY VWR ++
Sbjct: 282 EDFRDAIEALRLQILIKQDSDIAITICSILEQVDPIRVNYWVWRKSRL 329
>sp|Q9LX33|FNTA_ARATH Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Arabidopsis thaliana GN=FTA PE=1 SV=2
Length = 326
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 100/208 (48%), Gaps = 64/208 (30%)
Query: 19 REEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVIN 78
R EW D+ P+ QDDGP PVV IAY
Sbjct: 12 RLEWSDVVPLTQDDGPNPVVPIAYK----------------------------------- 36
Query: 79 HTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNP 138
E + +DY R A+ + E+S RAL LT + + +N
Sbjct: 37 -------EEFRETMDYFR------------------AIYFSDERSPRALRLTEETLLLNS 71
Query: 139 ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPD---EE 195
NYTVW +RR +L+ALN DL +EL++I ++NSKNYQ+W HR+ + E +G PD E
Sbjct: 72 GNYTVWHFRRLVLEALNHDLFEELEFIERIAEDNSKNYQLWHHRRWVAEKLG-PDVAGRE 130
Query: 196 LALTAAILAQDAKNYHAWQHRQWVINLL 223
L T +L+ DAK+YHAW HRQW + L
Sbjct: 131 LEFTRRVLSLDAKHYHAWSHRQWTLRAL 158
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 51 DELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQR--EIDYCRDKIQIAPKNESP 108
DEL Y L+ DV NNSAW QRY+VI + R E+ Y I P NES
Sbjct: 163 DELDYCHELLEADVFNNSAWNQRYYVITQSPLLGGLEAMRESEVSYTIKAILTNPANESS 222
Query: 109 WNYLRG 114
W YL+
Sbjct: 223 WRYLKA 228
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 172 NSKNYQVWRHRQIIVEWMG-EPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229
NS NY VW R++++E + + EEL I ++KNY W HR+WV L D G
Sbjct: 70 NSGNYTVWHFRRLVLEALNHDLFEELEFIERIAEDNSKNYQLWHHRRWVAEKLGPDVAG 128
>sp|Q54RT9|FNTA_DICDI Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Dictyostelium discoideum GN=fntA PE=3
SV=1
Length = 322
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 78/118 (66%), Gaps = 8/118 (6%)
Query: 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD------LHQELK 163
NY R A++ + EKS R L L + I NP+NYT+W YRRE+LKA+ +D + QE+
Sbjct: 48 NYFR-AILKSKEKSLRVLDLLEEVIQENPSNYTIWYYRREVLKAIEQDETIEYDIQQEMN 106
Query: 164 YIGEKIKENSKNYQVWRHRQIIVE-WMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220
+ + + + KNYQ+W HR+ IVE ++G ++E + +L +DAKNYHAW HRQW++
Sbjct: 107 LLNDMGETDPKNYQIWNHRRFIVEKYIGSDNKEKEFLSGVLLEDAKNYHAWSHRQWLL 164
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 33/227 (14%)
Query: 5 SSDEDNEIWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDV 64
SS E+++ +V + R EW D++P+ QDDGP P+ I YS+ +F D+++Y ++
Sbjct: 2 SSSEEDDGYVPFSKRPEWSDVKPLAQDDGPHPICPILYSE---VFKDKMNYFRAILK--- 55
Query: 65 RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124
+ E R +D + IQ P N + W Y R V+ A E+ E
Sbjct: 56 -------------------SKEKSLRVLDLLEEVIQENPSNYTIW-YYRREVLKAIEQDE 95
Query: 125 -------RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177
+ + L D +P NY +W +RR I++ ++E +++ + E++KNY
Sbjct: 96 TIEYDIQQEMNLLNDMGETDPKNYQIWNHRRFIVEKYIGSDNKEKEFLSGVLLEDAKNYH 155
Query: 178 VWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224
W HRQ +++ + + ELA+ +L+ D +N W HR +VI+ L+
Sbjct: 156 AWSHRQWLLKTYRDWNGELAMVDKLLSLDHRNNSVWNHRFFVISNLN 202
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 52 ELSYIEGLISHDVRNNSAWTQRYFVINHT--TQFTPEVIQREIDYCRDKIQIAPKNESPW 109
EL+ ++ L+S D RNNS W R+FVI++ + F +I+RE+++ + I+ +P NESPW
Sbjct: 173 ELAMVDKLLSLDHRNNSVWNHRFFVISNLNPSPFPLSLIEREVEFAFNHIRHSPNNESPW 232
Query: 110 NYLRG 114
+YL+G
Sbjct: 233 SYLKG 237
>sp|O60052|FNTA_SCHPO Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cwp1 PE=1 SV=1
Length = 294
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK 170
Y R A++ E S RAL LT I NPA+YTVW YR +IL + EL+++ E +
Sbjct: 47 YFR-AIMAKKEYSLRALNLTGFLIMNNPAHYTVWAYRFQILNHTPSYIDNELEWLDEIAE 105
Query: 171 ENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225
+ KNYQVW HRQ I+ + EL T + D+KNYH W +R W++ +D
Sbjct: 106 DFQKNYQVWHHRQKILSLTKNYERELEFTKKMFEIDSKNYHVWSYRVWILQNFND 160
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 21 EWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHD-------------VRNN 67
E+ L PIPQDDG P+ I Y+ + ++Y +++ + NN
Sbjct: 16 EYGPLTPIPQDDGENPLAKICYTTG---YEQGMAYFRAIMAKKEYSLRALNLTGFLIMNN 72
Query: 68 SA----WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS 123
A W R+ ++NH TP I E+++ + + KN W++ R +++ +
Sbjct: 73 PAHYTVWAYRFQILNH----TPSYIDNELEWLDEIAEDFQKNYQVWHH-RQKILSLTKNY 127
Query: 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183
ER L T ++ NY VW YR IL+ N D QELK E ++++ N W HR
Sbjct: 128 ERELEFTKKMFEIDSKNYHVWSYRVWILQNFN-DYSQELKLTNELLEKDIYNNSAWNHRF 186
Query: 184 IIV 186
++
Sbjct: 187 YVL 189
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAP 103
Q N +S EL L+ D+ NNSAW R++V+ T++ ++ E++Y +DKI AP
Sbjct: 156 QNFNDYSQELKLTNELLEKDIYNNSAWNHRFYVLFETSKVVSWSLEEELNYLKDKILFAP 215
Query: 104 KNESPWNYLRGAVVNAG 120
N+S WNYL G + +G
Sbjct: 216 DNQSAWNYLCGVLDKSG 232
>sp|Q9Y765|FNTA_CANAX Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Candida albicans GN=RAM2 PE=1 SV=1
Length = 306
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Query: 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKAL-NKDLHQELKYIGEKIK 170
L A++ A E SERAL +T I ++YT+W YR ILK L N++L+ EL + E
Sbjct: 38 LLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL 97
Query: 171 ENSKNYQVWRHRQIIVEWMGE-------PDEELALTAAILAQDAKNYHAWQHRQWVINLL 223
+N KNYQ+W +RQ+I+ + E P E + A+L+ D KN+H W +R+W+++
Sbjct: 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFPILEAMLSSDPKNHHVWSYRKWLVDTF 157
Query: 224 D 224
D
Sbjct: 158 D 158
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 73/136 (53%), Gaps = 9/136 (6%)
Query: 52 ELSYIEGLISHDVRNNSAWTQRYFVINHTTQF-TPEVIQREIDYCRDKIQIAPKNESPWN 110
ELS+++ +I D++NNSAW+ R+F++ T I E++Y +DKI P+N S WN
Sbjct: 165 ELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWN 224
Query: 111 YLRG-------AVVNAGEKSERALALTADAITMNPANYTVWQ-YRREILKALNKDLHQEL 162
YL G ++ E S + + L D +T + A T+ + Y ++ ++ ++ L
Sbjct: 225 YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284
Query: 163 KYIGEKIKENSKNYQV 178
K + I+ N +YQ+
Sbjct: 285 KSKYDPIRSNFWDYQI 300
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 17/147 (11%)
Query: 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQ-----FTPEVIQREIDYCRDKIQI 101
NL+ DEL + E + + +N W R +I + F P RE +
Sbjct: 84 NLY-DELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP---YREFPILEAMLSS 139
Query: 102 APKNESPWNYLRGAVVNAGE--KSERALALTADAITMNPANYTVWQYRREIL-----KAL 154
PKN W+Y R +V+ + + L+ I + N + W +R +L A
Sbjct: 140 DPKNHHVWSY-RKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT 198
Query: 155 NKDLHQELKYIGEKIKENSKNYQVWRH 181
+ + +EL Y+ +KI + +N W +
Sbjct: 199 DNTIDEELNYVKDKIVKCPQNPSTWNY 225
>sp|P29703|FNTA_YEAST Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAM2 PE=1 SV=1
Length = 316
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 9/123 (7%)
Query: 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD-------LHQELKY 164
L A+++ E S RAL LTA+ I + PA YT+W YR I++ + + L++EL +
Sbjct: 37 LARALISLNELSPRALQLTAEIIDVAPAFYTIWNYRFNIVRHMMSESEDTVLYLNKELDW 96
Query: 165 IGEKIKENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQWVINL 222
+ E N KNYQ+W +RQ +++ P EL + ++ D+KNYH W +R+W
Sbjct: 97 LDEVTLNNPKNYQIWSYRQSLLKLHPSPSFKRELPILKLMIDDDSKNYHVWSYRKWCCLF 156
Query: 223 LDD 225
D
Sbjct: 157 FSD 159
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Query: 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALT------ADAITMN-P 138
E+ R + + I +AP + WNY V + +SE + D +T+N P
Sbjct: 46 ELSPRALQLTAEIIDVAPAFYTIWNYRFNIVRHMMSESEDTVLYLNKELDWLDEVTLNNP 105
Query: 139 ANYTVWQYRREILKA-LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELA 197
NY +W YR+ +LK + +EL + I ++SKNY VW +R+ + + ELA
Sbjct: 106 KNYQIWSYRQSLLKLHPSPSFKRELPILKLMIDDDSKNYHVWSYRKWCCLFFSDFQHELA 165
Query: 198 LTAAILAQDAKNYHAWQHRQW 218
+ ++ D N AW HR +
Sbjct: 166 YASDLIETDIYNNSAWTHRMF 186
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 59/121 (48%), Gaps = 20/121 (16%)
Query: 11 EIWVYYKNREEWKDLRPIPQDDGPTPVVAI------------AYSQKCNLF-SD---ELS 54
+IW Y R+ L P P P++ + +Y + C LF SD EL+
Sbjct: 109 QIWSY---RQSLLKLHPSPSFKRELPILKLMIDDDSKNYHVWSYRKWCCLFFSDFQHELA 165
Query: 55 YIEGLISHDVRNNSAWTQRYFV-INHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLR 113
Y LI D+ NNSAWT R F +N + + E+ + DKIQ+ P+N SPW YLR
Sbjct: 166 YASDLIETDIYNNSAWTHRMFYWVNAKDVISKVELADELQFIMDKIQLVPQNISPWTYLR 225
Query: 114 G 114
G
Sbjct: 226 G 226
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESP 108
F EL ++ +I D +N W+ R + + F Q E+ Y D I+ N S
Sbjct: 126 FKRELPILKLMIDDDSKNYHVWSYRKWCCLFFSDF-----QHELAYASDLIETDIYNNSA 180
Query: 109 WNYLRGAVVNAGE---KSERA--LALTADAITMNPANYTVWQYRR 148
W + VNA + K E A L D I + P N + W Y R
Sbjct: 181 WTHRMFYWVNAKDVISKVELADELQFIMDKIQLVPQNISPWTYLR 225
>sp|O94412|PGTA_SCHPO Geranylgeranyl transferase type-2 subunit alpha
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=bet4 PE=3 SV=1
Length = 344
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 12/114 (10%)
Query: 123 SERALALTADAITMNPANYTVWQYRREILK-------ALNKD---LHQELKYIGEKIKEN 172
SE L LT + + NP Y+VW YRREIL +LN+ L ELKY+ K+K
Sbjct: 45 SEGNLKLTTELLDWNPETYSVWNYRREILLNDVFPKISLNEKQDLLDNELKYVLSKMKVF 104
Query: 173 SKNYQVWRHRQIIVEWMGEP--DEELALTAAILAQDAKNYHAWQHRQWVINLLD 224
K Y ++ HR+ +E P + E+ +T +L+ DA+N+H W +R++V++ ++
Sbjct: 105 PKVYWIFNHRRWCLENAPYPNWNYEMMITEKLLSADARNFHGWHYRRYVVSQIE 158
>sp|Q92696|PGTA_HUMAN Geranylgeranyl transferase type-2 subunit alpha OS=Homo sapiens
GN=RABGGTA PE=1 SV=2
Length = 567
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 119 AGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKYIGEKI 169
AGE E L LT+ + NP T+W RRE+L+ L + EL ++ +
Sbjct: 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCL 100
Query: 170 KENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQWV 219
+ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++V
Sbjct: 101 RVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRRFV 152
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 20/180 (11%)
Query: 68 SAWTQRYFVINHT-TQFTPE----VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122
+ W R V+ TQ +PE +++ E+ + +++ PK+ W++ + E
Sbjct: 64 TLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEP 123
Query: 123 S-ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181
+ R L L A + ++ N+ W YRR + +EL + I N NY W +
Sbjct: 124 NWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHY 183
Query: 182 RQIIVEWM-GEPD-------------EELALTAAILAQDAKNYHAWQHRQWVINLLDDDD 227
R ++ + +PD +EL L D + AW + +W++ D D
Sbjct: 184 RSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRADPQD 243
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVI-QREIDYCRDKIQIAPKNE 106
L EL ++E + + ++ W R +++ PE RE++ C +++ +N
Sbjct: 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL----PEPNWTRELELCARFLEVDERNF 143
Query: 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN 155
W+Y R A LA T IT N +NY+ W YR +L L+
Sbjct: 144 HCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192
>sp|Q5NVK5|PGTA_PONAB Geranylgeranyl transferase type-2 subunit alpha OS=Pongo abelii
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 119 AGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKYIGEKI 169
AGE E L LT+ + NP T+W RRE+L+ L + EL ++ +
Sbjct: 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCL 100
Query: 170 KENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQWV 219
+ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++V
Sbjct: 101 RVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRRFV 152
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 20/180 (11%)
Query: 68 SAWTQRYFVINHT-TQFTPE----VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122
+ W R V+ TQ +PE +++ E+ + +++ PK+ W++ + E
Sbjct: 64 TLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEP 123
Query: 123 S-ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181
+ R L L A + ++ N+ W YRR + +EL + I N NY W +
Sbjct: 124 NWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHY 183
Query: 182 RQIIVEWM-GEPD-------------EELALTAAILAQDAKNYHAWQHRQWVINLLDDDD 227
R ++ + +PD +EL L D + AW + +W++ D D
Sbjct: 184 RSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRADPQD 243
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVI-QREIDYCRDKIQIAPKNE 106
L EL ++E + + ++ W R +++ PE RE++ C +++ +N
Sbjct: 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL----PEPNWTRELELCARFLEVDERNF 143
Query: 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN 155
W+Y R A LA T IT N +NY+ W YR +L L+
Sbjct: 144 HCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192
>sp|Q08602|PGTA_RAT Geranylgeranyl transferase type-2 subunit alpha OS=Rattus
norvegicus GN=Rabggta PE=1 SV=1
Length = 567
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 119 AGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKYIGEKI 169
AGE E L LT+ + NP T+W RRE+L+ L + + EL ++ +
Sbjct: 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 100
Query: 170 KENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQW 218
+ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++
Sbjct: 101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRF 151
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 20/174 (11%)
Query: 68 SAWTQRYFVINHT-TQFTPE----VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122
+ W R V+ H T+ +PE +++ E+ + +++ PK+ W++ + E
Sbjct: 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123
Query: 123 S-ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181
+ R L L A + + N+ W YRR + +EL + I N NY W +
Sbjct: 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183
Query: 182 RQIIVEWM-GEPD-------------EELALTAAILAQDAKNYHAWQHRQWVIN 221
R ++ + +PD +EL L D + AW + +W++
Sbjct: 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVI-QREIDYCRDKIQIAPKNE 106
L EL ++E + + ++ W R ++++ PE RE++ C ++ +N
Sbjct: 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL----PEPNWARELELCARFLEADERNF 143
Query: 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN 155
W+Y R A LA T IT N +NY+ W YR +L L+
Sbjct: 144 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192
>sp|Q9JHK4|PGTA_MOUSE Geranylgeranyl transferase type-2 subunit alpha OS=Mus musculus
GN=Rabggta PE=1 SV=1
Length = 567
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 119 AGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKYIGEKI 169
AGE E L LT+ + NP T+W RRE+L+ L + EL ++ +
Sbjct: 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCL 100
Query: 170 KENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQW 218
+ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++
Sbjct: 101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRF 151
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 20/174 (11%)
Query: 68 SAWTQRYFVINHT-TQFTPE----VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122
+ W R V+ TQ +PE +++ E+ + +++ PK+ W++ + E
Sbjct: 64 TLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123
Query: 123 S-ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181
+ R L L A + + N+ W YRR + +EL + I N NY W +
Sbjct: 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183
Query: 182 RQIIVEWM-GEPDE-------------ELALTAAILAQDAKNYHAWQHRQWVIN 221
R ++ + +PD EL L D + AW + +W++
Sbjct: 184 RSCLLPQLHPQPDSGPQGRLPENVLLRELELVQNAFFTDPNDQSAWFYHRWLLG 237
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVI-QREIDYCRDKIQIAPKNE 106
L EL ++E + + ++ W R ++++ PE RE++ C ++ +N
Sbjct: 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL----PEPNWARELELCARFLEADERNF 143
Query: 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN 155
W+Y R A LA T IT N +NY+ W YR +L L+
Sbjct: 144 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192
>sp|A5A779|PGTA_PIG Geranylgeranyl transferase type-2 subunit alpha OS=Sus scrofa
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 119 AGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKYIGEKI 169
AGE E L LT+ + NP T+W RRE+L+ L + EL ++ +
Sbjct: 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQRLEVQKSPEELAALVKAELGFLESCL 100
Query: 170 KENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQWV 219
+ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++V
Sbjct: 101 RVNPKSYGTWHHRCWLLGRLPEPNWARELELCARFLEVDERNFHCWDYRRFV 152
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVI-QREIDYCRDKIQIAPKNE 106
L EL ++E + + ++ W R +++ PE RE++ C +++ +N
Sbjct: 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL----PEPNWARELELCARFLEVDERNF 143
Query: 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN 155
W+Y R A LA T IT N +NY+ W YR +L L+
Sbjct: 144 HCWDYRRFVASQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 20/180 (11%)
Query: 68 SAWTQRYFVINHT-TQFTPE----VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122
+ W R V+ Q +PE +++ E+ + +++ PK+ W++ + E
Sbjct: 64 TLWNCRREVLQRLEVQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEP 123
Query: 123 S-ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181
+ R L L A + ++ N+ W YRR + +EL + I N NY W +
Sbjct: 124 NWARELELCARFLEVDERNFHCWDYRRFVASQAAVPPAEELAFTDSLITRNFSNYSSWHY 183
Query: 182 RQIIVEWM-GEPD-------------EELALTAAILAQDAKNYHAWQHRQWVINLLDDDD 227
R ++ + +PD +EL L D + AW + +W++ D D
Sbjct: 184 RSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRADPQD 243
>sp|Q5EA80|PGTA_BOVIN Geranylgeranyl transferase type-2 subunit alpha OS=Bos taurus
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 119 AGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKYIGEKI 169
AGE E L LT+ + NP T+W RRE+L+ L + EL ++ +
Sbjct: 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQQLEVQKSPEELATLVKAELGFLESCL 100
Query: 170 KENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQW 218
+ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++
Sbjct: 101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEVDERNFHCWDYRRF 151
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 20/180 (11%)
Query: 68 SAWTQRYFVINHT-TQFTPE----VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122
+ W R V+ Q +PE +++ E+ + +++ PK+ W++ + E
Sbjct: 64 TLWNCRREVLQQLEVQKSPEELATLVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123
Query: 123 S-ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181
+ R L L A + ++ N+ W YRR + +EL + I N NY W +
Sbjct: 124 NWARELELCARFLEVDERNFHCWDYRRFVAAQAAVPPAEELAFTDSLITRNFSNYSSWHY 183
Query: 182 RQIIVEWM-GEPD-------------EELALTAAILAQDAKNYHAWQHRQWVINLLDDDD 227
R ++ + +PD +EL L D + AW + +W++ D D
Sbjct: 184 RSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRADPQD 243
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVI-QREIDYCRDKIQIAPKN 105
L EL ++E + + ++ W R ++++ PE RE++ C +++ +N
Sbjct: 87 TLVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL----PEPNWARELELCARFLEVDERN 142
Query: 106 ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN 155
W+Y R A LA T IT N +NY+ W YR +L L+
Sbjct: 143 FHCWDYRRFVAAQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192
>sp|Q55DQ4|PGTA_DICDI Geranylgeranyl transferase type-2 subunit alpha OS=Dictyostelium
discoideum GN=rabggta PE=3 SV=2
Length = 311
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 11/112 (9%)
Query: 120 GEKSERALALTADAITMNPANYTVWQYRREILKAL-----NKDLH----QELKYIGEKIK 170
G E +L+++ + NP YT+W YRR + N +L E+K++ E I+
Sbjct: 44 GRYDEISLSVSKLVLIENPEFYTIWNYRRLAILQFTETKENSELQVIYQNEMKFLEECIQ 103
Query: 171 ENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQWVI 220
+K+Y +W HRQ I M D E+ L +L D +N+H W HR++++
Sbjct: 104 RFTKSYWIWFHRQWIALRMDNCDWEREMKLCTKLLNFDLRNFHCWGHRRFIL 155
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHR- 182
ER + L + + N+ W +RR ILK N L ELKY EK+++N NY W R
Sbjct: 128 EREMKLCTKLLNFDLRNFHCWGHRRFILKHSNIKLEDELKYTTEKVEQNFSNYSAWHQRS 187
Query: 183 QIIVEWMGEPD-------EELALTAAILAQDAKNYHAWQHRQWVI 220
I+ + EP+ EE L + + K+ +W + +W++
Sbjct: 188 SILPKIYKEPEQLLEKILEEFELVRNAVYTEPKDSSSWIYHKWLV 232
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 66/141 (46%), Gaps = 11/141 (7%)
Query: 103 PKNESPWNYLRGAVVNAGEKSERA---------LALTADAITMNPANYTVWQYRREI-LK 152
P+ + WNY R A++ E E + + + I +Y +W +R+ I L+
Sbjct: 62 PEFYTIWNYRRLAILQFTETKENSELQVIYQNEMKFLEECIQRFTKSYWIWFHRQWIALR 121
Query: 153 ALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG-EPDEELALTAAILAQDAKNYH 211
N D +E+K + + + +N+ W HR+ I++ + ++EL T + Q+ NY
Sbjct: 122 MDNCDWEREMKLCTKLLNFDLRNFHCWGHRRFILKHSNIKLEDELKYTTEKVEQNFSNYS 181
Query: 212 AWQHRQWVINLLDDDDRGVLE 232
AW R ++ + + +LE
Sbjct: 182 AWHQRSSILPKIYKEPEQLLE 202
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 52 ELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNY 111
E+ L++ D+RN W R F++ H+ ++ E+ Y +K++ N S W+
Sbjct: 130 EMKLCTKLLNFDLRNFHCWGHRRFILKHSNI----KLEDELKYTTEKVEQNFSNYSAWHQ 185
Query: 112 LRGAVVNAGEKSERAL-------ALTADAITMNPANYTVWQYRR 148
+ ++ E+ L L +A+ P + + W Y +
Sbjct: 186 RSSILPKIYKEPEQLLEKILEEFELVRNAVYTEPKDSSSWIYHK 229
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQR---EIDYCRDKIQIAPKN 105
DEL Y + + N SAW QR ++ + +++++ E + R+ + PK+
Sbjct: 162 LEDELKYTTEKVEQNFSNYSAWHQRSSILPKIYKEPEQLLEKILEEFELVRNAVYTEPKD 221
Query: 106 ESPWNYLRGAV 116
S W Y + V
Sbjct: 222 SSSWIYHKWLV 232
>sp|O93829|PGTA_CANAX Geranylgeranyl transferase type-2 subunit alpha OS=Candida albicans
GN=BET4 PE=3 SV=1
Length = 371
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 66/115 (57%), Gaps = 17/115 (14%)
Query: 123 SERALALTADAITMNPANYTVWQYRREIL-----KALNKD-------LHQELKYIGEKIK 170
S+ AL T + + +NP YT+W YRREIL + +KD L+Q+L ++ ++K
Sbjct: 46 SDEALIKTNELLIINPEFYTIWNYRREILINNYSSSNDKDDQIYEDILNQDLNFVLVQLK 105
Query: 171 ENSKNYQVWRHRQ-IIVEW--MGEPD--EELALTAAILAQDAKNYHAWQHRQWVI 220
+ K Y +W HR+ ++ E +G+ + E + + +L D +N+H W +R++V+
Sbjct: 106 KFPKCYWIWNHRRWLLFELVKLGKVNWKYEFGVVSKLLDLDQRNFHGWHYRRFVV 160
>sp|Q00618|PGTA_YEAST Geranylgeranyl transferase type-2 subunit alpha OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET4 PE=1
SV=3
Length = 327
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 10/108 (9%)
Query: 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLH-----QELKYIGEKIKENSKNYQ 177
S AL T++ + NP +W YRR+I+ +L +L +EL ++ +K+ K Y
Sbjct: 45 SIEALKKTSELLEKNPEFNAIWNYRRDIIASLASELEIPFWDKELVFVMMLLKDYPKVYW 104
Query: 178 VWRHRQIIVEW--MGEP---DEELALTAAILAQDAKNYHAWQHRQWVI 220
+W HR +++ P ELA+ +L QDA+NYH W +R+ V+
Sbjct: 105 IWNHRLWVLKHYPTSSPKVWQTELAVVNKLLEQDARNYHGWHYRRIVV 152
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 15/134 (11%)
Query: 103 PKNESPWNYLRGAVVNAGEKSE-----RALALTADAITMNPANYTVWQYRREILK----A 153
P+ + WNY R + + + E + L + P Y +W +R +LK +
Sbjct: 60 PEFNAIWNYRRDIIASLASELEIPFWDKELVFVMMLLKDYPKVYWIWNHRLWVLKHYPTS 119
Query: 154 LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM------GEPDEELALTAAILAQDA 207
K EL + + ++++++NY W +R+I+V + EE T + +
Sbjct: 120 SPKVWQTELAVVNKLLEQDARNYHGWHYRRIVVGNIESITNKSLDKEEFEYTTIKINNNI 179
Query: 208 KNYHAWQHRQWVIN 221
NY AW R +I+
Sbjct: 180 SNYSAWHQRVQIIS 193
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 37 VVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCR 96
+ ++A + + EL ++ L+ + W R +V+ H +P+V Q E+
Sbjct: 73 IASLASELEIPFWDKELVFVMMLLKDYPKVYWIWNHRLWVLKHYPTSSPKVWQTELAVVN 132
Query: 97 DKIQIAPKNESPWNYLRGAVVNAGEKSERAL-----ALTADAITMNPANYTVWQYRREIL 151
++ +N W+Y R V N + ++L T I N +NY+ W R +I+
Sbjct: 133 KLLEQDARNYHGWHYRRIVVGNIESITNKSLDKEEFEYTTIKINNNISNYSAWHQRVQII 192
Query: 152 KAL 154
+
Sbjct: 193 SRM 195
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQF-----TPEVIQREIDYCRDKIQI 101
+L +E Y I++++ N SAW QR +I+ Q E I+ EI Y + +
Sbjct: 162 SLDKEEFEYTTIKINNNISNYSAWHQRVQIISRMFQKGEVGNQKEYIRTEISYIINAMFT 221
Query: 102 APKNESPWNYLRGAVVN 118
+++S W Y++ + N
Sbjct: 222 DAEDQSVWFYIKWFIKN 238
>sp|A3KPW7|PTAR1_DANRE Protein prenyltransferase alpha subunit repeat-containing protein 1
OS=Danio rerio GN=ptar1 PE=2 SV=1
Length = 426
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 10/143 (6%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
+D + + P + WN + + E+ L L A++ +P + W +RR +L
Sbjct: 88 VDITSTLLLLNPDFTTAWNVRKELLQCGVLNPEKDLYLGKLALSKHPKSPETWIHRRWVL 147
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211
+ L K E G+++K+++++ + Q ++ EE+ + A + NY+
Sbjct: 148 QRLQK----ECSPSGQELKDSAESRRQCERLQRALQ------EEMRVCAEAAGRYPSNYN 197
Query: 212 AWQHRQWVINLLDDDDRGVLEYE 234
AW HR WV+ + + VL E
Sbjct: 198 AWSHRIWVLQNMAKGNLKVLHDE 220
>sp|Q7Z6K3|PTAR1_HUMAN Protein prenyltransferase alpha subunit repeat-containing protein 1
OS=Homo sapiens GN=PTAR1 PE=2 SV=2
Length = 402
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 11/140 (7%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
ID + + P + WN + +++ + L L A+T P + W +RR +L
Sbjct: 88 IDVTCTLLLLNPDFTTAWNVRKELILSGTLNPIKDLHLGKLALTKFPKSPETWIHRRWVL 147
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211
+ L QE K N R +++I EE+ + + NY+
Sbjct: 148 Q----QLIQETSLPSFVTKGNLGTIPTERAQRLI-------QEEMEVCGEAAGRYPSNYN 196
Query: 212 AWQHRQWVINLLDDDDRGVL 231
AW HR WV+ L D +L
Sbjct: 197 AWSHRIWVLQHLAKLDVKIL 216
>sp|A1L3L1|PTR1B_XENLA Protein prenyltransferase alpha subunit repeat-containing protein
1-B (Fragment) OS=Xenopus laevis GN=ptar1-b PE=2 SV=1
Length = 431
Score = 38.1 bits (87), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 11/140 (7%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
ID + + P + WN + + + + L L A+T P + W +RR +L
Sbjct: 87 IDVTCTLLLLNPDFTTAWNVRKELIQSGTLNPVKDLQLGKLALTKFPKSPETWIHRRWVL 146
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211
+ + ++L + + +++ + + Q IV+ EE+ + + NY+
Sbjct: 147 QRVVQEL-----VVAAVVGKDATCPETYERIQTIVQ------EEMHVCYEAAGRYPSNYN 195
Query: 212 AWQHRQWVINLLDDDDRGVL 231
+W HR WVI L + + +L
Sbjct: 196 SWSHRIWVIQHLGNLNVKLL 215
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 18/124 (14%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT----------PEVIQREIDYCRD 97
L DELS + +S V ++S + R F++ T P++I E + C
Sbjct: 214 LLIDELSSTKHWVSMHVSDHSGFHYRQFLLKSLLCKTLKDSDNVTAVPDLIANEKNPCLP 273
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+ + E+ WN + + E + L + + P + T+W +RR+I K +++
Sbjct: 274 R-----EGEAIWNQI---CFDLPYLLEEEMKLNRELLDSYPGHETLWCHRRQIFKLIHQL 325
Query: 158 LHQE 161
L ++
Sbjct: 326 LLEQ 329
>sp|Q0IHB3|PTR1A_XENLA Protein prenyltransferase alpha subunit repeat-containing protein
1-A OS=Xenopus laevis GN=ptar1-a PE=2 SV=1
Length = 432
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 11/134 (8%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
ID + + P + WN + + + + L L A+T P + W +RR L
Sbjct: 88 IDVTCTLLLLNPDFTTAWNVRKELIQSGTLNPVKDLQLGKLALTKFPKSPETWIHRRWAL 147
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211
+ L ++L + + +++ + Q IVE EE+ + + NY+
Sbjct: 148 QRLVQEL-----VVAAVVDKDAICPETSERIQAIVE------EEMHVCCEAAGRYPSNYN 196
Query: 212 AWQHRQWVINLLDD 225
+W HR WV+ L +
Sbjct: 197 SWSHRIWVVQHLGN 210
>sp|Q5ZMQ9|PEX5_CHICK Peroxisomal targeting signal 1 receptor OS=Gallus gallus GN=PEX5
PE=2 SV=1
Length = 645
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQY-- 146
++ +D + + P + WN L GA + G +SE A+A A+ + P Y +Y
Sbjct: 511 EKAVDCFSAALSVRPNDHLLWNKL-GATLANGNRSEEAVAAYRRALELQPG-YIRSRYNL 568
Query: 147 ---------RREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPD 193
RE ++ + LH + K G + ++ + + +W ++ + +G+ D
Sbjct: 569 GISCINLGAHREAVEHFLEALHMQQKSRGPRGQQGAMSDNIWSTLRMALSMLGQSD 624
>sp|Q8BRH0|TMTC3_MOUSE Transmembrane and TPR repeat-containing protein 3 OS=Mus musculus
GN=Tmtc3 PE=2 SV=2
Length = 920
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 100 QIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLH 159
+IAP + + + L + + E A L AI+M P + R E+L +NK L
Sbjct: 527 RIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLK 586
Query: 160 QELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEEL 196
+ Y+ + ++ + N +W + I+ + EP+E L
Sbjct: 587 AKEAYL-KALELDRNNADLWYNLAIVYIELKEPNEAL 622
>sp|Q9C0G6|DYH6_HUMAN Dynein heavy chain 6, axonemal OS=Homo sapiens GN=DNAH6 PE=1 SV=3
Length = 4158
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 51 DELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES 107
D L YI G I++ R +W QR F+PE ++ + Y I AP +S
Sbjct: 3740 DALIYITGEITYGGRVTDSWDQRCLRTILKRFFSPETLEEDYKYSESGIYFAPMADS 3796
>sp|Q6ZXV5|TMTC3_HUMAN Transmembrane and TPR repeat-containing protein 3 OS=Homo sapiens
GN=TMTC3 PE=1 SV=2
Length = 915
Score = 32.7 bits (73), Expect = 2.0, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 100 QIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLH 159
+IAP + + + L + + E A L AI+M P + R E+L +NK L
Sbjct: 522 RIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLK 581
Query: 160 QELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEEL 196
+ Y+ + ++ + N +W + I+ + EP+E L
Sbjct: 582 AKEAYL-KALELDRNNADLWYNLAIVHIELKEPNEAL 617
>sp|O94325|PEX5_SCHPO Peroxisomal targeting signal receptor OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pex5 PE=1 SV=1
Length = 598
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNP 138
+R D R +Q P NE WN L A+ NA EK+ A++ A+++ P
Sbjct: 455 ERSADCFRQALQDEPSNEILWNKLGAALTNA-EKNTEAVSSYNRAVSLQP 503
>sp|B7VMG4|PURR_VIBSL HTH-type transcriptional repressor PurR OS=Vibrio splendidus
(strain LGP32) GN=purR PE=3 SV=1
Length = 334
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 35 TPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDY 94
T VA A +K N DEL+Y ++ ++ N+ T V T F EVI Y
Sbjct: 25 TRFVAEATQEKVNKAVDELNYAPSAVARSLKCNTTRTIGMLVTQSTNLFFSEVIDGVESY 84
Query: 95 C 95
C
Sbjct: 85 C 85
>sp|A6H5H4|YCF3_CYCTA Photosystem I assembly protein ycf3 OS=Cycas taitungensis GN=ycf3
PE=3 SV=1
Length = 170
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 12/138 (8%)
Query: 83 FTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALT----ADAITMNP 138
FT + D I AP + + Y R V++A + E A AL A ++P
Sbjct: 10 FTDKTFTIVADILLRIIPTAPGEKEAFTYYRDGVMSAQSEGEYAEALQNYYEAMRPEIDP 69
Query: 139 ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELAL 198
+ + Y ++ N + + L+Y + +K N Q + + +I + GE
Sbjct: 70 YDRSYILYNIGLIHMSNGEHTEALEYYFQALKRNPSLPQAFNNMAVICHYRGE------- 122
Query: 199 TAAILAQDAKNYHAWQHR 216
AI D + AW R
Sbjct: 123 -QAIRQGDPETAEAWSDR 139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,170,743
Number of Sequences: 539616
Number of extensions: 4015129
Number of successful extensions: 10455
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 10165
Number of HSP's gapped (non-prelim): 136
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)