Query psy4772
Match_columns 235
No_of_seqs 144 out of 1477
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 17:18:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02789 farnesyltranstransfer 100.0 9.3E-37 2E-41 266.9 19.3 205 12-222 2-229 (320)
2 KOG0530|consensus 100.0 2.8E-28 6E-33 202.1 12.4 203 14-222 10-233 (318)
3 PLN02789 farnesyltranstransfer 100.0 1.1E-27 2.4E-32 209.7 14.9 134 89-223 54-189 (320)
4 KOG4626|consensus 99.9 2.4E-24 5.3E-29 195.8 15.8 185 47-233 232-445 (966)
5 KOG4626|consensus 99.9 1.4E-23 3.1E-28 190.8 14.8 170 47-223 334-503 (966)
6 TIGR00990 3a0801s09 mitochondr 99.9 5.4E-22 1.2E-26 188.1 18.1 180 47-233 308-490 (615)
7 KOG1126|consensus 99.9 2.3E-22 5E-27 184.1 13.2 180 47-233 435-614 (638)
8 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-21 3.8E-26 184.6 19.6 185 46-232 173-455 (615)
9 KOG0530|consensus 99.9 7.9E-22 1.7E-26 163.8 14.9 162 47-232 40-204 (318)
10 PRK12370 invasion protein regu 99.9 4.6E-21 1E-25 179.8 19.5 184 47-232 275-463 (553)
11 PRK15359 type III secretion sy 99.8 1.2E-19 2.6E-24 141.8 14.3 126 93-223 14-139 (144)
12 KOG1126|consensus 99.8 1.7E-20 3.7E-25 171.9 10.4 165 59-230 413-577 (638)
13 TIGR02521 type_IV_pilW type IV 99.8 1.7E-18 3.8E-23 141.2 20.7 178 46-230 44-223 (234)
14 PRK12370 invasion protein regu 99.8 4.1E-19 8.9E-24 166.6 18.2 173 47-226 318-491 (553)
15 KOG0529|consensus 99.8 3.4E-19 7.3E-24 156.4 14.7 171 50-221 46-240 (421)
16 PRK15359 type III secretion sy 99.8 2.4E-19 5.3E-24 140.1 12.1 127 53-189 13-139 (144)
17 PRK11189 lipoprotein NlpI; Pro 99.8 1.2E-18 2.5E-23 151.6 16.9 177 46-233 77-259 (296)
18 KOG0529|consensus 99.8 6.7E-19 1.5E-23 154.5 15.2 150 76-229 37-203 (421)
19 PRK11189 lipoprotein NlpI; Pro 99.8 5.4E-19 1.2E-23 153.7 14.5 170 45-224 110-284 (296)
20 KOG1155|consensus 99.8 1.7E-18 3.7E-23 153.5 16.5 178 47-231 344-528 (559)
21 PRK15174 Vi polysaccharide exp 99.8 4.2E-18 9.2E-23 162.7 20.6 184 46-230 123-338 (656)
22 KOG1155|consensus 99.8 2.9E-18 6.2E-23 152.1 17.1 186 46-233 275-489 (559)
23 KOG0547|consensus 99.8 1.1E-18 2.3E-23 155.6 14.0 177 47-230 374-557 (606)
24 PRK09782 bacteriophage N4 rece 99.8 3.5E-18 7.7E-23 168.3 19.0 179 45-232 521-699 (987)
25 PRK09782 bacteriophage N4 rece 99.8 4.1E-18 8.8E-23 167.9 19.1 170 45-222 554-723 (987)
26 PRK15174 Vi polysaccharide exp 99.8 7.5E-18 1.6E-22 160.9 18.9 178 47-231 191-373 (656)
27 PRK11447 cellulose synthase su 99.8 1.2E-17 2.6E-22 168.5 20.1 180 46-231 282-516 (1157)
28 KOG0547|consensus 99.8 6.1E-18 1.3E-22 150.8 15.5 173 47-226 340-519 (606)
29 TIGR02917 PEP_TPR_lipo putativ 99.8 2.1E-17 4.6E-22 159.1 19.4 178 46-232 716-893 (899)
30 TIGR02917 PEP_TPR_lipo putativ 99.8 6.3E-17 1.4E-21 155.8 19.3 178 46-230 138-315 (899)
31 PF13429 TPR_15: Tetratricopep 99.7 1.5E-17 3.2E-22 143.0 12.6 186 44-232 55-270 (280)
32 PRK11447 cellulose synthase su 99.7 8.1E-17 1.7E-21 162.5 18.3 180 46-232 474-693 (1157)
33 KOG1125|consensus 99.7 6.8E-17 1.5E-21 146.5 14.3 179 47-232 299-520 (579)
34 TIGR03302 OM_YfiO outer membra 99.7 8.9E-16 1.9E-20 128.4 19.6 179 22-207 17-234 (235)
35 PRK11788 tetratricopeptide rep 99.7 5.1E-16 1.1E-20 138.5 18.4 178 46-230 48-234 (389)
36 TIGR02521 type_IV_pilW type IV 99.7 6.1E-16 1.3E-20 126.1 16.4 159 66-231 30-190 (234)
37 COG3063 PilF Tfp pilus assembl 99.7 2.1E-15 4.6E-20 123.7 17.8 175 46-227 48-224 (250)
38 PRK11788 tetratricopeptide rep 99.7 1.7E-15 3.6E-20 135.3 18.6 177 46-230 120-302 (389)
39 TIGR03302 OM_YfiO outer membra 99.7 1.2E-15 2.6E-20 127.6 16.6 165 61-232 27-225 (235)
40 KOG0553|consensus 99.7 4.4E-16 9.5E-21 132.1 11.5 162 49-227 31-200 (304)
41 PRK10370 formate-dependent nit 99.7 1.6E-15 3.4E-20 124.7 14.2 126 86-212 53-180 (198)
42 TIGR02552 LcrH_SycD type III s 99.7 2.7E-15 5.9E-20 114.8 14.4 128 93-222 4-131 (135)
43 PRK10370 formate-dependent nit 99.6 3E-15 6.4E-20 123.0 13.5 124 47-177 53-179 (198)
44 COG5536 BET4 Protein prenyltra 99.6 1.7E-15 3.7E-20 127.0 11.7 191 30-222 15-239 (328)
45 PRK15179 Vi polysaccharide bio 99.6 1.8E-14 3.9E-19 137.7 19.5 161 50-217 69-229 (694)
46 KOG0548|consensus 99.6 1.7E-14 3.7E-19 130.1 15.2 99 47-151 16-114 (539)
47 KOG0553|consensus 99.6 3E-15 6.4E-20 127.1 9.5 104 47-156 95-198 (304)
48 KOG1125|consensus 99.6 1.5E-14 3.3E-19 131.3 14.5 176 50-227 336-559 (579)
49 TIGR02552 LcrH_SycD type III s 99.6 1.8E-14 4E-19 110.2 12.9 123 54-183 4-126 (135)
50 PF13429 TPR_15: Tetratricopep 99.6 8E-15 1.7E-19 126.1 12.1 154 45-205 122-277 (280)
51 PRK10049 pgaA outer membrane p 99.6 4.9E-14 1.1E-18 137.0 18.5 176 46-230 250-447 (765)
52 COG5536 BET4 Protein prenyltra 99.6 3E-15 6.4E-20 125.6 7.3 147 66-216 30-190 (328)
53 PRK15179 Vi polysaccharide bio 99.6 3.2E-14 7E-19 135.9 15.3 141 90-232 70-210 (694)
54 PRK10049 pgaA outer membrane p 99.6 7.2E-14 1.6E-18 135.9 18.0 167 46-219 285-470 (765)
55 COG3063 PilF Tfp pilus assembl 99.6 4.8E-14 1E-18 115.8 14.0 152 68-226 36-189 (250)
56 KOG1173|consensus 99.6 2E-13 4.3E-18 123.9 18.1 173 46-220 325-533 (611)
57 KOG0548|consensus 99.6 1.4E-13 3.1E-18 124.2 16.3 173 47-222 238-472 (539)
58 KOG0550|consensus 99.5 6E-14 1.3E-18 123.4 11.4 202 13-221 143-368 (486)
59 KOG3060|consensus 99.5 7.7E-13 1.7E-17 110.1 17.2 172 46-224 65-239 (289)
60 KOG0550|consensus 99.5 4.4E-14 9.6E-19 124.2 9.5 182 47-230 63-341 (486)
61 PRK14574 hmsH outer membrane p 99.5 1.2E-12 2.6E-17 127.3 20.0 172 46-227 47-220 (822)
62 KOG2076|consensus 99.5 7.7E-13 1.7E-17 125.3 17.7 177 47-229 153-502 (895)
63 KOG1173|consensus 99.5 7.8E-13 1.7E-17 120.1 16.7 178 47-231 292-510 (611)
64 KOG0624|consensus 99.5 7.8E-13 1.7E-17 114.3 15.5 166 47-219 52-266 (504)
65 PLN03088 SGT1, suppressor of 99.5 5.9E-13 1.3E-17 118.7 14.4 111 112-223 7-117 (356)
66 cd05804 StaR_like StaR_like; a 99.5 2.1E-12 4.5E-17 114.0 16.4 158 46-207 56-217 (355)
67 cd05804 StaR_like StaR_like; a 99.4 2.7E-12 5.9E-17 113.2 15.2 180 46-233 19-209 (355)
68 KOG2002|consensus 99.4 1E-11 2.2E-16 118.6 18.9 184 34-220 199-424 (1018)
69 COG5010 TadD Flp pilus assembl 99.4 1.5E-11 3.3E-16 102.8 17.1 173 50-230 50-222 (257)
70 KOG2002|consensus 99.4 4.9E-12 1.1E-16 120.7 15.7 175 47-223 544-763 (1018)
71 PRK15363 pathogenicity island 99.4 2.1E-12 4.5E-17 101.3 10.4 94 111-205 39-132 (157)
72 PLN03088 SGT1, suppressor of 99.4 3E-12 6.6E-17 114.2 12.9 102 47-154 16-117 (356)
73 PRK15363 pathogenicity island 99.4 4.8E-12 1E-16 99.2 11.5 111 55-172 22-133 (157)
74 TIGR00540 hemY_coli hemY prote 99.4 1.4E-11 3.1E-16 111.7 16.1 182 46-230 166-390 (409)
75 KOG0624|consensus 99.4 4.3E-12 9.4E-17 109.8 11.4 158 62-226 33-205 (504)
76 KOG4162|consensus 99.4 5.4E-11 1.2E-15 111.5 18.6 193 37-231 481-775 (799)
77 KOG2076|consensus 99.4 1.7E-11 3.6E-16 116.4 15.3 131 70-207 142-272 (895)
78 KOG1127|consensus 99.3 8E-12 1.7E-16 119.4 11.6 173 47-226 472-646 (1238)
79 KOG1174|consensus 99.3 1.6E-10 3.4E-15 102.2 17.8 177 47-224 246-519 (564)
80 KOG4162|consensus 99.3 3.1E-11 6.7E-16 113.0 14.1 137 68-210 651-788 (799)
81 KOG3060|consensus 99.3 1.1E-10 2.4E-15 97.3 15.7 139 44-188 97-237 (289)
82 COG4783 Putative Zn-dependent 99.3 3.1E-10 6.6E-15 102.1 19.6 158 62-226 301-458 (484)
83 PRK11906 transcriptional regul 99.3 1E-10 2.2E-15 105.4 16.2 155 48-204 273-435 (458)
84 PRK14574 hmsH outer membrane p 99.3 8.2E-11 1.8E-15 114.6 16.9 172 50-229 17-188 (822)
85 cd00189 TPR Tetratricopeptide 99.3 5.5E-11 1.2E-15 82.1 11.4 97 111-208 4-100 (100)
86 KOG1129|consensus 99.3 2E-11 4.3E-16 105.2 10.7 177 46-229 269-448 (478)
87 CHL00033 ycf3 photosystem I as 99.3 6.1E-11 1.3E-15 94.5 13.0 111 111-225 39-166 (168)
88 PRK02603 photosystem I assembl 99.3 3.8E-11 8.2E-16 96.2 11.8 134 63-226 31-167 (172)
89 KOG2003|consensus 99.3 8.6E-11 1.9E-15 105.0 14.9 176 47-228 504-712 (840)
90 PF13414 TPR_11: TPR repeat; P 99.3 2.2E-11 4.7E-16 82.6 8.5 67 140-207 2-69 (69)
91 PRK10747 putative protoheme IX 99.3 2E-10 4.4E-15 103.8 16.7 181 44-231 129-382 (398)
92 PF13414 TPR_11: TPR repeat; P 99.3 2E-11 4.3E-16 82.8 7.3 68 105-173 2-69 (69)
93 TIGR02795 tol_pal_ybgF tol-pal 99.3 1.6E-10 3.6E-15 85.5 12.8 100 111-211 6-111 (119)
94 KOG1129|consensus 99.2 1.4E-11 3E-16 106.2 7.1 170 44-220 301-473 (478)
95 KOG1156|consensus 99.2 3.4E-10 7.4E-15 104.5 16.2 175 31-212 4-179 (700)
96 TIGR02795 tol_pal_ybgF tol-pal 99.2 1.6E-10 3.5E-15 85.5 11.5 106 67-179 2-113 (119)
97 PRK10153 DNA-binding transcrip 99.2 4.9E-10 1.1E-14 104.4 17.0 148 59-211 329-488 (517)
98 PRK02603 photosystem I assembl 99.2 1.7E-10 3.7E-15 92.4 12.0 105 45-176 47-154 (172)
99 CHL00033 ycf3 photosystem I as 99.2 2.8E-10 6.2E-15 90.7 13.0 121 50-176 16-154 (168)
100 KOG2003|consensus 99.2 1.4E-10 3.1E-15 103.6 12.0 170 37-214 460-663 (840)
101 PRK11906 transcriptional regul 99.2 7.9E-10 1.7E-14 99.7 16.7 157 59-219 240-415 (458)
102 cd00189 TPR Tetratricopeptide 99.2 1.8E-10 3.9E-15 79.5 9.9 99 69-174 2-100 (100)
103 TIGR00540 hemY_coli hemY prote 99.2 1E-09 2.3E-14 99.5 17.2 181 44-231 129-356 (409)
104 COG5010 TadD Flp pilus assembl 99.2 7.7E-10 1.7E-14 92.6 14.0 148 47-201 80-227 (257)
105 KOG1128|consensus 99.2 2.1E-10 4.6E-15 107.0 11.3 156 47-205 438-616 (777)
106 PRK10153 DNA-binding transcrip 99.2 7.6E-10 1.7E-14 103.1 14.8 128 47-177 356-488 (517)
107 KOG0495|consensus 99.2 1E-09 2.2E-14 101.7 15.1 172 46-224 664-865 (913)
108 KOG1156|consensus 99.2 6E-10 1.3E-14 102.9 13.3 138 87-226 22-159 (700)
109 PRK14720 transcript cleavage f 99.1 5.5E-10 1.2E-14 108.6 13.5 147 45-215 43-208 (906)
110 PRK14720 transcript cleavage f 99.1 2.3E-09 5.1E-14 104.3 17.1 150 47-220 79-267 (906)
111 KOG1840|consensus 99.1 2.4E-09 5.1E-14 98.9 16.2 184 46-230 254-470 (508)
112 COG4783 Putative Zn-dependent 99.1 2.8E-09 6E-14 96.0 15.6 130 100-231 300-429 (484)
113 KOG4234|consensus 99.1 9.8E-10 2.1E-14 89.0 10.6 100 113-213 101-205 (271)
114 KOG0495|consensus 99.1 7.9E-09 1.7E-13 95.9 17.4 189 34-224 582-801 (913)
115 COG4235 Cytochrome c biogenesi 99.1 4.2E-09 9.1E-14 90.0 14.5 124 87-211 137-262 (287)
116 PF13432 TPR_16: Tetratricopep 99.1 7E-10 1.5E-14 74.3 7.7 62 113-175 3-64 (65)
117 PF13432 TPR_16: Tetratricopep 99.1 6.4E-10 1.4E-14 74.5 7.4 64 146-210 2-65 (65)
118 COG4235 Cytochrome c biogenesi 99.0 5.6E-09 1.2E-13 89.3 13.8 123 48-177 137-262 (287)
119 KOG1128|consensus 99.0 2.4E-09 5.1E-14 100.2 12.3 168 46-229 411-606 (777)
120 KOG1174|consensus 99.0 1.6E-08 3.4E-13 89.8 16.1 171 48-225 213-383 (564)
121 PF12895 Apc3: Anaphase-promot 99.0 1E-09 2.2E-14 77.5 6.6 81 120-202 2-84 (84)
122 KOG1840|consensus 99.0 4.4E-09 9.5E-14 97.2 12.6 179 46-231 212-430 (508)
123 PRK10747 putative protoheme IX 99.0 7E-08 1.5E-12 87.3 19.2 117 47-170 98-215 (398)
124 KOG0543|consensus 99.0 1.1E-08 2.3E-13 90.5 12.9 96 111-207 261-357 (397)
125 PRK10803 tol-pal system protei 99.0 1.5E-08 3.3E-13 86.8 13.1 108 107-216 143-257 (263)
126 PF12569 NARP1: NMDA receptor- 98.9 1E-07 2.2E-12 88.8 17.9 66 145-211 198-263 (517)
127 PF12895 Apc3: Anaphase-promot 98.9 8.1E-10 1.8E-14 78.0 3.1 75 90-167 7-83 (84)
128 PRK10803 tol-pal system protei 98.9 2.6E-08 5.7E-13 85.2 13.0 109 66-181 141-256 (263)
129 KOG2376|consensus 98.9 4.4E-08 9.4E-13 90.0 14.9 173 46-231 25-245 (652)
130 KOG0543|consensus 98.9 2.4E-08 5.2E-13 88.4 12.8 121 47-173 222-357 (397)
131 COG2956 Predicted N-acetylgluc 98.9 1.2E-07 2.5E-12 82.0 15.9 180 48-228 50-267 (389)
132 PRK15331 chaperone protein Sic 98.9 5E-08 1.1E-12 77.0 12.5 102 62-170 32-133 (165)
133 PF13525 YfiO: Outer membrane 98.9 1.7E-07 3.7E-12 77.1 16.4 155 67-227 5-195 (203)
134 PRK15331 chaperone protein Sic 98.9 2.8E-08 6.1E-13 78.5 10.5 100 111-212 41-140 (165)
135 KOG4234|consensus 98.9 2.6E-08 5.7E-13 80.8 10.3 105 70-180 98-206 (271)
136 KOG4648|consensus 98.9 1E-09 2.2E-14 95.3 2.3 172 47-229 111-320 (536)
137 KOG4648|consensus 98.8 1.1E-08 2.3E-13 89.0 8.1 101 112-213 102-202 (536)
138 PRK10866 outer membrane biogen 98.8 4E-07 8.6E-12 77.2 17.6 146 47-199 46-235 (243)
139 COG0457 NrfG FOG: TPR repeat [ 98.8 7.3E-07 1.6E-11 69.9 18.0 169 46-221 72-247 (291)
140 KOG1127|consensus 98.8 4E-08 8.8E-13 94.7 12.1 167 48-221 507-675 (1238)
141 PF13371 TPR_9: Tetratricopept 98.8 3.3E-08 7.2E-13 67.4 8.3 65 115-180 3-67 (73)
142 PF06552 TOM20_plant: Plant sp 98.8 8.4E-08 1.8E-12 76.6 11.5 88 88-176 7-114 (186)
143 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 2.5E-08 5.4E-13 90.0 9.0 70 101-172 70-142 (453)
144 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 3.9E-08 8.5E-13 88.7 9.9 70 62-137 70-142 (453)
145 PF06552 TOM20_plant: Plant sp 98.8 1E-07 2.2E-12 76.1 11.2 97 46-143 4-116 (186)
146 PF12688 TPR_5: Tetratrico pep 98.8 2E-07 4.3E-12 70.5 12.2 93 111-204 5-103 (120)
147 PF13371 TPR_9: Tetratricopept 98.8 4.7E-08 1E-12 66.6 7.9 69 148-217 2-70 (73)
148 KOG4555|consensus 98.8 1.3E-07 2.7E-12 72.0 10.6 98 112-210 48-149 (175)
149 COG0457 NrfG FOG: TPR repeat [ 98.8 1.5E-06 3.2E-11 68.1 17.3 157 45-208 107-268 (291)
150 PF09976 TPR_21: Tetratricopep 98.7 2.5E-07 5.4E-12 72.0 12.4 111 90-203 29-145 (145)
151 PF12569 NARP1: NMDA receptor- 98.7 1.1E-06 2.5E-11 81.8 17.2 161 45-206 50-292 (517)
152 PF14559 TPR_19: Tetratricopep 98.7 5.9E-08 1.3E-12 65.2 6.5 61 120-181 4-64 (68)
153 PF09976 TPR_21: Tetratricopep 98.7 2.5E-07 5.5E-12 71.9 10.5 116 46-169 24-145 (145)
154 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 4.3E-07 9.4E-12 81.8 13.2 110 88-202 185-294 (395)
155 PRK10866 outer membrane biogen 98.7 2.5E-06 5.5E-11 72.3 17.2 160 65-229 30-231 (243)
156 PF12688 TPR_5: Tetratrico pep 98.7 2.3E-07 5E-12 70.1 9.7 97 67-170 1-103 (120)
157 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.7E-07 7.9E-12 82.3 12.2 111 47-167 183-293 (395)
158 PF13525 YfiO: Outer membrane 98.7 1.3E-06 2.9E-11 71.8 14.7 143 46-195 18-197 (203)
159 PF14559 TPR_19: Tetratricopep 98.6 1.7E-07 3.6E-12 63.0 7.2 65 152-217 2-66 (68)
160 PF04733 Coatomer_E: Coatomer 98.6 1.1E-07 2.4E-12 82.6 7.7 170 49-229 82-254 (290)
161 PF04733 Coatomer_E: Coatomer 98.6 2.9E-07 6.3E-12 80.0 9.1 155 46-212 115-272 (290)
162 KOG4642|consensus 98.6 2.5E-07 5.5E-12 76.9 8.1 92 113-205 16-107 (284)
163 PLN03077 Protein ECB2; Provisi 98.6 3.1E-06 6.7E-11 83.7 17.3 169 46-228 537-709 (857)
164 COG4785 NlpI Lipoprotein NlpI, 98.6 5.1E-07 1.1E-11 74.3 9.5 104 66-176 64-167 (297)
165 COG4785 NlpI Lipoprotein NlpI, 98.6 1.4E-06 2.9E-11 71.8 11.9 175 46-226 78-287 (297)
166 PLN03081 pentatricopeptide (PP 98.5 3.3E-06 7.2E-11 81.6 15.6 172 46-230 373-548 (697)
167 COG2956 Predicted N-acetylgluc 98.5 1E-05 2.2E-10 70.2 16.6 162 47-211 155-317 (389)
168 KOG4555|consensus 98.5 1E-06 2.2E-11 67.1 8.2 87 47-139 57-147 (175)
169 PLN03218 maturation of RBCL 1; 98.4 3.1E-05 6.7E-10 78.0 19.6 171 47-226 593-770 (1060)
170 PLN03218 maturation of RBCL 1; 98.4 3.3E-05 7.1E-10 77.8 19.7 173 47-229 556-738 (1060)
171 PLN03081 pentatricopeptide (PP 98.4 1.3E-05 2.8E-10 77.6 15.5 166 46-226 272-442 (697)
172 KOG2376|consensus 98.4 4E-06 8.6E-11 77.4 11.1 118 86-212 26-146 (652)
173 PF13512 TPR_18: Tetratricopep 98.3 1.3E-05 2.9E-10 62.0 11.6 84 67-155 10-98 (142)
174 PF13512 TPR_18: Tetratricopep 98.3 1.5E-05 3.3E-10 61.7 11.9 101 111-212 14-135 (142)
175 KOG0376|consensus 98.3 1.4E-06 3E-11 78.8 6.9 97 47-149 18-114 (476)
176 PF13431 TPR_17: Tetratricopep 98.3 7.1E-07 1.5E-11 52.1 2.9 32 165-196 2-33 (34)
177 KOG3785|consensus 98.3 4.4E-05 9.4E-10 67.2 14.9 175 47-231 36-242 (557)
178 COG3071 HemY Uncharacterized e 98.3 0.00018 3.9E-09 63.8 18.5 179 44-229 129-380 (400)
179 PF13424 TPR_12: Tetratricopep 98.2 1.5E-06 3.2E-11 60.0 4.3 63 142-205 6-75 (78)
180 KOG0376|consensus 98.2 1.9E-06 4E-11 78.0 4.7 119 87-212 19-137 (476)
181 PF13428 TPR_14: Tetratricopep 98.2 4.3E-06 9.2E-11 51.6 5.0 41 177-217 2-42 (44)
182 PF13424 TPR_12: Tetratricopep 98.1 2E-06 4.3E-11 59.4 3.3 59 112-171 10-75 (78)
183 KOG0545|consensus 98.1 2.5E-05 5.5E-10 65.5 9.9 104 111-215 182-303 (329)
184 COG1729 Uncharacterized protei 98.1 7.5E-05 1.6E-09 63.4 12.2 106 70-182 144-255 (262)
185 PF00515 TPR_1: Tetratricopept 98.1 6.9E-06 1.5E-10 47.5 4.1 31 178-208 3-33 (34)
186 PF13431 TPR_17: Tetratricopep 98.1 3.6E-06 7.7E-11 49.1 2.7 32 130-162 2-33 (34)
187 PF13428 TPR_14: Tetratricopep 98.0 1.2E-05 2.7E-10 49.5 5.2 41 142-183 2-42 (44)
188 KOG4642|consensus 98.0 1.2E-05 2.5E-10 67.1 6.4 83 47-135 24-106 (284)
189 PF14938 SNAP: Soluble NSF att 98.0 3.2E-05 7E-10 66.8 9.5 161 47-215 49-235 (282)
190 PLN03077 Protein ECB2; Provisi 98.0 0.00018 3.9E-09 71.3 15.7 111 105-220 553-667 (857)
191 PF01239 PPTA: Protein prenylt 98.0 1.1E-05 2.5E-10 45.9 4.2 28 195-222 2-29 (31)
192 KOG2053|consensus 98.0 0.00021 4.6E-09 68.9 15.1 144 46-197 22-166 (932)
193 KOG2796|consensus 98.0 0.0001 2.3E-09 62.5 11.0 132 75-211 185-321 (366)
194 KOG3785|consensus 98.0 0.00015 3.3E-09 63.9 12.3 146 45-191 69-234 (557)
195 PF00515 TPR_1: Tetratricopept 98.0 1.6E-05 3.4E-10 45.9 4.3 32 142-174 2-33 (34)
196 PF07719 TPR_2: Tetratricopept 97.9 2.2E-05 4.7E-10 45.1 4.7 33 177-209 2-34 (34)
197 COG1729 Uncharacterized protei 97.9 0.00016 3.4E-09 61.5 11.3 105 111-216 145-255 (262)
198 PRK04841 transcriptional regul 97.9 0.00064 1.4E-08 67.4 17.4 176 46-228 422-630 (903)
199 PF01239 PPTA: Protein prenylt 97.9 2.8E-05 6E-10 44.3 4.5 29 161-189 2-30 (31)
200 KOG1308|consensus 97.9 3.1E-06 6.6E-11 73.7 0.6 82 90-173 132-213 (377)
201 KOG1130|consensus 97.9 3.5E-05 7.7E-10 68.9 6.9 182 46-229 108-334 (639)
202 COG4700 Uncharacterized protei 97.9 0.00075 1.6E-08 54.7 13.8 136 90-229 74-212 (251)
203 PRK04841 transcriptional regul 97.9 0.00058 1.3E-08 67.7 16.0 155 46-207 465-643 (903)
204 COG3071 HemY Uncharacterized e 97.8 0.0017 3.7E-08 57.8 16.3 153 46-204 166-389 (400)
205 PF04184 ST7: ST7 protein; In 97.8 0.0012 2.7E-08 60.4 15.3 168 47-215 182-385 (539)
206 PF07719 TPR_2: Tetratricopept 97.8 6.9E-05 1.5E-09 42.9 4.9 33 142-175 2-34 (34)
207 KOG2053|consensus 97.8 0.00074 1.6E-08 65.3 14.4 139 86-227 23-162 (932)
208 KOG0551|consensus 97.7 0.00014 3E-09 63.4 8.2 82 90-173 99-184 (390)
209 KOG1308|consensus 97.7 2.1E-05 4.5E-10 68.7 2.7 88 47-140 128-215 (377)
210 COG4105 ComL DNA uptake lipopr 97.7 0.01 2.2E-07 50.3 18.4 164 46-218 47-244 (254)
211 KOG4340|consensus 97.7 0.00043 9.3E-09 59.9 10.3 153 47-206 24-208 (459)
212 KOG0545|consensus 97.7 0.00063 1.4E-08 57.3 10.7 111 67-179 178-301 (329)
213 KOG3081|consensus 97.7 0.0015 3.1E-08 55.6 12.8 163 54-229 94-260 (299)
214 COG4105 ComL DNA uptake lipopr 97.6 0.0064 1.4E-07 51.5 16.6 159 66-229 33-223 (254)
215 KOG3081|consensus 97.6 0.0028 6E-08 53.9 14.3 123 87-211 152-277 (299)
216 PF14938 SNAP: Soluble NSF att 97.6 0.00044 9.6E-09 59.7 9.3 138 48-206 30-185 (282)
217 KOG1130|consensus 97.6 7.1E-05 1.5E-09 67.0 4.2 182 46-233 30-258 (639)
218 KOG0551|consensus 97.6 0.0009 1.9E-08 58.5 10.8 88 47-140 95-186 (390)
219 KOG2796|consensus 97.6 0.0036 7.7E-08 53.4 13.9 159 47-212 191-361 (366)
220 PF05843 Suf: Suppressor of fo 97.6 0.0014 3E-08 56.7 11.9 125 88-214 17-145 (280)
221 KOG1915|consensus 97.5 0.017 3.6E-07 53.0 18.8 182 47-229 258-490 (677)
222 PF13181 TPR_8: Tetratricopept 97.5 0.00018 3.8E-09 41.3 3.8 32 177-208 2-33 (34)
223 COG3914 Spy Predicted O-linked 97.4 0.0027 5.8E-08 59.2 12.6 128 91-218 50-184 (620)
224 KOG1915|consensus 97.4 0.01 2.2E-07 54.4 15.7 149 47-204 87-235 (677)
225 PF05843 Suf: Suppressor of fo 97.4 0.0016 3.5E-08 56.3 10.4 99 112-210 6-104 (280)
226 COG3118 Thioredoxin domain-con 97.3 0.022 4.8E-07 49.2 15.8 110 90-206 152-266 (304)
227 PF08424 NRDE-2: NRDE-2, neces 97.3 0.032 6.8E-07 49.2 17.3 157 53-210 5-188 (321)
228 PRK10941 hypothetical protein; 97.2 0.0023 5E-08 55.0 9.3 76 144-220 184-259 (269)
229 PF13181 TPR_8: Tetratricopept 97.2 0.00067 1.4E-08 38.8 4.2 30 143-173 3-32 (34)
230 KOG2610|consensus 97.2 0.0069 1.5E-07 53.3 11.6 156 48-210 118-283 (491)
231 PF13281 DUF4071: Domain of un 97.1 0.033 7.2E-07 50.0 15.2 162 47-215 155-341 (374)
232 PF04910 Tcf25: Transcriptiona 97.0 0.037 8.1E-07 49.6 15.4 158 57-216 30-233 (360)
233 PF10300 DUF3808: Protein of u 97.0 0.03 6.6E-07 51.9 15.2 157 47-206 202-377 (468)
234 PF03704 BTAD: Bacterial trans 97.0 0.016 3.4E-07 44.6 11.3 61 142-203 63-123 (146)
235 KOG1070|consensus 97.0 0.046 1E-06 55.8 16.4 172 37-214 1462-1638(1710)
236 KOG4340|consensus 97.0 0.011 2.5E-07 51.2 10.8 133 86-220 24-188 (459)
237 KOG1310|consensus 97.0 0.0016 3.5E-08 60.1 5.8 92 48-142 389-480 (758)
238 KOG2396|consensus 96.9 0.045 9.8E-07 50.4 14.6 91 50-146 88-179 (568)
239 PF13174 TPR_6: Tetratricopept 96.9 0.0037 8E-08 35.1 5.0 32 143-175 2-33 (33)
240 KOG3824|consensus 96.9 0.0023 4.9E-08 55.6 5.7 61 89-150 133-193 (472)
241 PF08424 NRDE-2: NRDE-2, neces 96.9 0.038 8.1E-07 48.7 13.6 111 92-204 5-130 (321)
242 PF04184 ST7: ST7 protein; In 96.9 0.022 4.8E-07 52.4 12.2 129 89-220 185-339 (539)
243 KOG1310|consensus 96.8 0.0083 1.8E-07 55.5 9.2 90 85-176 387-479 (758)
244 PRK10941 hypothetical protein; 96.8 0.0095 2.1E-07 51.2 9.2 71 115-186 189-259 (269)
245 KOG2610|consensus 96.8 0.023 5E-07 50.1 11.4 121 73-200 109-233 (491)
246 KOG1941|consensus 96.8 0.015 3.2E-07 51.7 10.2 161 67-234 83-270 (518)
247 KOG2047|consensus 96.7 0.13 2.9E-06 48.8 16.0 195 15-218 367-592 (835)
248 KOG2396|consensus 96.6 0.015 3.2E-07 53.5 9.5 92 89-181 88-179 (568)
249 PF02259 FAT: FAT domain; Int 96.6 0.17 3.7E-06 44.2 16.3 140 63-208 142-341 (352)
250 PF04781 DUF627: Protein of un 96.5 0.033 7.1E-07 41.3 9.0 86 119-204 8-106 (111)
251 KOG3824|consensus 96.5 0.0055 1.2E-07 53.3 5.7 69 117-186 126-194 (472)
252 smart00028 TPR Tetratricopepti 96.5 0.0047 1E-07 33.2 3.5 31 143-174 3-33 (34)
253 PF14853 Fis1_TPR_C: Fis1 C-te 96.5 0.0096 2.1E-07 38.2 5.3 39 144-183 4-42 (53)
254 KOG1070|consensus 96.5 0.11 2.3E-06 53.2 14.9 172 50-229 1441-1619(1710)
255 PF13176 TPR_7: Tetratricopept 96.5 0.0052 1.1E-07 35.9 3.7 26 178-203 1-26 (36)
256 KOG2047|consensus 96.4 0.25 5.4E-06 47.1 16.3 155 57-220 339-521 (835)
257 PF13281 DUF4071: Domain of un 96.4 0.23 4.9E-06 44.7 15.4 155 21-181 163-341 (374)
258 PF13174 TPR_6: Tetratricopept 96.4 0.0064 1.4E-07 34.1 3.7 33 177-209 1-33 (33)
259 PF14853 Fis1_TPR_C: Fis1 C-te 96.4 0.026 5.7E-07 36.2 6.8 36 113-148 7-42 (53)
260 PF03704 BTAD: Bacterial trans 96.3 0.038 8.3E-07 42.4 9.0 58 112-170 67-124 (146)
261 PF10300 DUF3808: Protein of u 96.3 0.034 7.3E-07 51.6 10.1 117 48-170 248-375 (468)
262 PF14561 TPR_20: Tetratricopep 96.3 0.087 1.9E-06 37.6 10.0 48 127-175 8-55 (90)
263 COG0790 FOG: TPR repeat, SEL1 96.3 0.43 9.4E-06 40.9 16.3 127 49-183 93-230 (292)
264 smart00028 TPR Tetratricopepti 96.3 0.013 2.7E-07 31.4 4.5 30 178-207 3-32 (34)
265 PF04781 DUF627: Protein of un 96.2 0.019 4.1E-07 42.5 6.3 96 46-171 9-107 (111)
266 KOG4507|consensus 96.2 0.048 1E-06 51.3 10.1 140 74-216 575-716 (886)
267 PF14561 TPR_20: Tetratricopep 96.2 0.027 5.9E-07 40.2 6.9 69 160-228 6-76 (90)
268 KOG1941|consensus 96.0 0.11 2.4E-06 46.4 11.0 151 48-204 98-274 (518)
269 KOG3364|consensus 96.0 0.066 1.4E-06 41.2 8.4 86 68-155 33-119 (149)
270 COG3914 Spy Predicted O-linked 96.0 0.17 3.7E-06 47.5 12.6 133 52-191 50-191 (620)
271 KOG3617|consensus 95.9 0.1 2.2E-06 51.1 11.0 161 25-202 792-993 (1416)
272 COG3118 Thioredoxin domain-con 95.8 1 2.2E-05 39.2 16.0 150 47-223 148-303 (304)
273 KOG2471|consensus 95.8 0.058 1.3E-06 49.7 8.8 118 101-220 235-379 (696)
274 COG4700 Uncharacterized protei 95.8 0.84 1.8E-05 37.4 14.5 159 50-219 73-238 (251)
275 PF13176 TPR_7: Tetratricopept 95.8 0.019 4.1E-07 33.4 3.9 23 144-167 2-24 (36)
276 KOG2471|consensus 95.8 0.06 1.3E-06 49.6 8.8 132 48-186 221-379 (696)
277 KOG4507|consensus 95.7 0.13 2.9E-06 48.4 10.9 140 50-196 196-337 (886)
278 PRK13184 pknD serine/threonine 95.5 0.34 7.3E-06 48.6 13.4 134 47-182 489-631 (932)
279 COG5191 Uncharacterized conser 95.4 0.036 7.9E-07 48.4 5.7 85 130-215 96-181 (435)
280 KOG1550|consensus 95.4 0.99 2.1E-05 42.9 16.0 161 49-220 228-406 (552)
281 COG0790 FOG: TPR repeat, SEL1 95.3 1.7 3.6E-05 37.2 18.4 164 47-220 55-233 (292)
282 KOG1550|consensus 95.0 1.7 3.7E-05 41.3 16.3 148 48-204 264-425 (552)
283 PF02259 FAT: FAT domain; Int 94.9 0.82 1.8E-05 39.9 13.1 117 102-220 142-302 (352)
284 PRK15180 Vi polysaccharide bio 94.8 0.17 3.8E-06 46.7 8.6 130 46-182 302-431 (831)
285 PF12968 DUF3856: Domain of Un 94.8 0.18 3.8E-06 38.1 7.2 87 47-133 23-126 (144)
286 COG2912 Uncharacterized conser 94.8 0.24 5.2E-06 42.4 8.9 74 147-221 187-260 (269)
287 PF12968 DUF3856: Domain of Un 94.6 0.49 1.1E-05 35.8 9.1 95 86-205 23-129 (144)
288 COG5191 Uncharacterized conser 94.6 0.046 9.9E-07 47.8 4.0 82 97-180 98-180 (435)
289 PRK15180 Vi polysaccharide bio 94.3 0.22 4.7E-06 46.1 8.0 128 86-215 303-430 (831)
290 KOG3364|consensus 93.9 0.54 1.2E-05 36.2 8.2 62 123-185 51-114 (149)
291 PF09986 DUF2225: Uncharacteri 93.7 0.4 8.7E-06 39.8 8.0 69 141-209 118-198 (214)
292 PRK13184 pknD serine/threonine 93.7 1.4 3.1E-05 44.3 13.1 131 86-219 489-634 (932)
293 COG2912 Uncharacterized conser 93.6 0.29 6.3E-06 42.0 7.0 71 115-186 189-259 (269)
294 COG4976 Predicted methyltransf 93.5 0.11 2.3E-06 43.7 4.1 56 47-107 9-64 (287)
295 PF13374 TPR_10: Tetratricopep 93.5 0.18 4E-06 29.4 4.2 29 177-205 3-31 (42)
296 PF09986 DUF2225: Uncharacteri 93.1 0.85 1.8E-05 37.9 9.0 91 48-138 92-196 (214)
297 COG2976 Uncharacterized protei 93.1 0.25 5.4E-06 40.4 5.6 63 111-175 130-192 (207)
298 KOG2422|consensus 93.0 8.4 0.00018 36.6 16.1 159 48-209 253-452 (665)
299 KOG1585|consensus 92.9 2.1 4.6E-05 36.5 10.9 155 48-206 46-220 (308)
300 COG4976 Predicted methyltransf 92.9 0.25 5.5E-06 41.5 5.4 52 90-142 13-64 (287)
301 PF07720 TPR_3: Tetratricopept 92.5 0.41 8.8E-06 28.0 4.6 33 177-209 2-36 (36)
302 KOG4814|consensus 92.5 1.7 3.7E-05 41.6 10.8 92 113-205 360-457 (872)
303 PF10373 EST1_DNA_bind: Est1 D 92.4 0.52 1.1E-05 39.9 7.1 62 126-188 1-62 (278)
304 COG2976 Uncharacterized protei 92.0 1.2 2.5E-05 36.5 8.1 95 113-211 95-194 (207)
305 PF09613 HrpB1_HrpK: Bacterial 91.8 3 6.5E-05 33.0 10.0 100 118-220 21-120 (160)
306 PF09613 HrpB1_HrpK: Bacterial 91.7 2.8 6E-05 33.2 9.7 82 68-155 11-92 (160)
307 PF10373 EST1_DNA_bind: Est1 D 91.5 0.69 1.5E-05 39.1 6.9 60 93-153 3-62 (278)
308 PF13374 TPR_10: Tetratricopep 91.2 0.55 1.2E-05 27.3 4.3 29 142-171 3-31 (42)
309 KOG3617|consensus 91.1 4.3 9.3E-05 40.3 12.1 165 47-234 742-936 (1416)
310 PF07720 TPR_3: Tetratricopept 90.4 0.38 8.3E-06 28.1 2.9 29 111-139 5-35 (36)
311 KOG1585|consensus 90.3 3.8 8.2E-05 35.0 9.7 149 50-206 10-180 (308)
312 PF04910 Tcf25: Transcriptiona 89.7 1.6 3.6E-05 39.1 7.8 110 94-205 28-168 (360)
313 KOG1586|consensus 89.4 12 0.00027 31.7 15.0 127 87-214 88-233 (288)
314 COG4941 Predicted RNA polymera 89.3 16 0.00034 32.7 17.9 163 49-216 212-405 (415)
315 KOG0546|consensus 88.5 1.7 3.7E-05 38.7 6.7 73 113-186 281-353 (372)
316 COG3629 DnrI DNA-binding trans 88.3 3 6.6E-05 36.1 8.1 54 150-204 162-215 (280)
317 KOG1258|consensus 88.2 24 0.00052 33.6 15.9 190 25-221 289-486 (577)
318 COG4941 Predicted RNA polymera 87.9 20 0.00042 32.1 13.1 130 48-182 271-405 (415)
319 KOG3807|consensus 87.6 20 0.00044 32.1 15.4 174 50-233 201-423 (556)
320 PF13226 DUF4034: Domain of un 87.6 18 0.00039 31.3 13.4 35 158-192 115-149 (277)
321 KOG1586|consensus 87.5 17 0.00036 30.9 13.0 106 114-220 81-199 (288)
322 cd02682 MIT_AAA_Arch MIT: doma 87.1 3.7 8.1E-05 28.2 6.4 35 122-156 28-62 (75)
323 COG3898 Uncharacterized membra 87.0 24 0.00053 32.3 15.9 118 89-207 171-294 (531)
324 PF10579 Rapsyn_N: Rapsyn N-te 85.4 8.8 0.00019 26.7 7.6 54 113-167 12-68 (80)
325 PF13226 DUF4034: Domain of un 84.7 3.9 8.4E-05 35.4 6.9 34 192-225 115-148 (277)
326 smart00386 HAT HAT (Half-A-TPR 84.3 2.4 5.1E-05 22.8 3.8 26 49-74 3-28 (33)
327 PF08631 SPO22: Meiosis protei 83.9 27 0.00057 29.9 16.6 173 46-221 6-203 (278)
328 TIGR02561 HrpB1_HrpK type III 83.6 17 0.00037 28.5 9.4 73 120-193 23-95 (153)
329 KOG1914|consensus 83.0 44 0.00095 31.8 14.9 116 90-205 349-464 (656)
330 TIGR02561 HrpB1_HrpK type III 82.8 9.7 0.00021 29.9 7.7 66 89-155 27-92 (153)
331 smart00386 HAT HAT (Half-A-TPR 82.6 2.8 6.1E-05 22.5 3.7 21 160-180 5-25 (33)
332 KOG1258|consensus 82.4 13 0.00027 35.4 9.7 129 88-218 61-192 (577)
333 COG3947 Response regulator con 82.0 3.1 6.8E-05 36.3 5.2 52 182-233 285-336 (361)
334 COG3898 Uncharacterized membra 81.8 42 0.00091 30.8 15.5 124 45-174 166-295 (531)
335 PF12862 Apc5: Anaphase-promot 81.6 8.7 0.00019 27.2 6.8 27 178-204 43-69 (94)
336 PF14929 TAF1_subA: TAF RNA Po 81.2 50 0.0011 31.5 13.3 105 112-221 347-466 (547)
337 KOG1914|consensus 81.0 52 0.0011 31.3 13.2 121 96-220 10-138 (656)
338 PF10516 SHNi-TPR: SHNi-TPR; 79.5 3.1 6.7E-05 24.6 3.1 25 112-136 6-30 (38)
339 PF10579 Rapsyn_N: Rapsyn N-te 79.5 13 0.00027 25.9 6.6 56 148-204 13-71 (80)
340 PF12862 Apc5: Anaphase-promot 77.9 21 0.00045 25.2 7.7 54 118-172 9-71 (94)
341 PF07721 TPR_4: Tetratricopept 77.9 3.2 6.9E-05 22.0 2.7 23 178-200 3-25 (26)
342 COG3947 Response regulator con 77.2 8.6 0.00019 33.7 6.3 48 151-199 289-336 (361)
343 PF15015 NYD-SP12_N: Spermatog 75.8 9.8 0.00021 35.0 6.5 57 147-204 234-290 (569)
344 COG3629 DnrI DNA-binding trans 74.2 8.3 0.00018 33.4 5.6 56 178-233 155-210 (280)
345 KOG2300|consensus 73.2 84 0.0018 29.7 14.8 150 47-206 289-475 (629)
346 PF14863 Alkyl_sulf_dimr: Alky 73.1 9.6 0.00021 29.5 5.2 44 113-156 76-119 (141)
347 PF15015 NYD-SP12_N: Spermatog 71.9 23 0.0005 32.6 7.9 50 114-164 235-284 (569)
348 KOG4814|consensus 69.4 21 0.00046 34.5 7.4 94 37-136 353-457 (872)
349 cd02682 MIT_AAA_Arch MIT: doma 68.9 8.7 0.00019 26.4 3.7 9 170-178 41-49 (75)
350 KOG0546|consensus 68.8 5.3 0.00012 35.6 3.2 73 70-148 278-350 (372)
351 PF11846 DUF3366: Domain of un 68.3 25 0.00053 28.2 6.9 49 158-207 127-175 (193)
352 cd02683 MIT_1 MIT: domain cont 67.9 33 0.00071 23.5 6.5 34 122-155 28-61 (77)
353 PF12854 PPR_1: PPR repeat 67.2 12 0.00026 21.1 3.6 27 175-201 6-32 (34)
354 KOG0985|consensus 67.1 1.5E+02 0.0033 30.8 12.9 129 65-220 1102-1259(1666)
355 PF07079 DUF1347: Protein of u 66.9 1E+02 0.0022 28.8 11.0 50 166-215 69-118 (549)
356 KOG4151|consensus 66.4 14 0.00029 36.3 5.7 88 90-178 71-163 (748)
357 KOG0890|consensus 66.1 21 0.00045 39.4 7.3 128 45-185 1395-1526(2382)
358 PF14863 Alkyl_sulf_dimr: Alky 64.4 17 0.00037 28.1 5.0 33 158-190 86-118 (141)
359 PF10516 SHNi-TPR: SHNi-TPR; 63.9 9.4 0.0002 22.5 2.7 30 68-102 2-31 (38)
360 cd02681 MIT_calpain7_1 MIT: do 62.8 20 0.00042 24.7 4.5 19 151-170 16-34 (76)
361 PF04053 Coatomer_WDAD: Coatom 62.5 15 0.00032 34.0 5.0 76 115-204 326-401 (443)
362 PF10602 RPN7: 26S proteasome 58.7 85 0.0018 25.0 8.3 97 107-206 37-143 (177)
363 PF01535 PPR: PPR repeat; Int 58.6 16 0.00034 19.2 2.9 27 178-204 2-28 (31)
364 PF13041 PPR_2: PPR repeat fam 58.5 25 0.00053 21.3 4.1 32 175-206 2-33 (50)
365 COG4455 ImpE Protein of avirul 57.6 34 0.00075 28.9 5.8 55 87-142 16-70 (273)
366 PF10255 Paf67: RNA polymerase 57.5 26 0.00056 32.1 5.6 49 47-100 136-192 (404)
367 KOG0128|consensus 57.1 2.2E+02 0.0047 28.6 14.9 59 162-220 298-356 (881)
368 KOG4151|consensus 57.0 18 0.00039 35.5 4.7 99 114-213 60-164 (748)
369 KOG2300|consensus 56.7 1.8E+02 0.0039 27.6 10.7 111 86-198 23-149 (629)
370 PHA02537 M terminase endonucle 56.6 59 0.0013 27.3 7.2 27 45-71 95-121 (230)
371 KOG2422|consensus 56.5 1.9E+02 0.0042 27.9 12.8 86 86-173 356-450 (665)
372 cd02677 MIT_SNX15 MIT: domain 56.3 17 0.00037 24.9 3.3 15 155-170 20-34 (75)
373 KOG3807|consensus 56.1 1E+02 0.0022 27.8 8.7 80 90-173 202-306 (556)
374 COG5107 RNA14 Pre-mRNA 3'-end 55.0 1.9E+02 0.0041 27.3 12.0 146 55-209 30-194 (660)
375 PF11846 DUF3366: Domain of un 54.8 51 0.0011 26.4 6.5 57 122-180 126-183 (193)
376 TIGR00756 PPR pentatricopeptid 53.7 30 0.00065 18.4 3.6 27 178-204 2-28 (35)
377 cd02680 MIT_calpain7_2 MIT: do 53.3 27 0.00059 23.9 3.9 19 151-170 16-34 (75)
378 KOG4014|consensus 52.9 1.1E+02 0.0023 25.3 7.8 109 103-218 31-152 (248)
379 KOG3783|consensus 52.5 2.1E+02 0.0046 27.2 11.2 93 89-183 250-344 (546)
380 smart00299 CLH Clathrin heavy 52.5 95 0.0021 23.1 14.5 75 46-132 20-94 (140)
381 PF10255 Paf67: RNA polymerase 51.2 44 0.00096 30.6 6.0 54 116-170 131-192 (404)
382 COG5107 RNA14 Pre-mRNA 3'-end 50.6 2.2E+02 0.0048 26.8 11.4 126 94-222 30-164 (660)
383 COG2909 MalT ATP-dependent tra 49.8 2.9E+02 0.0063 28.0 13.1 116 69-190 417-551 (894)
384 KOG1464|consensus 49.4 84 0.0018 27.5 7.0 38 47-84 41-82 (440)
385 PF07079 DUF1347: Protein of u 49.3 2.3E+02 0.005 26.6 13.6 137 69-214 8-166 (549)
386 PF00244 14-3-3: 14-3-3 protei 49.2 1.6E+02 0.0034 24.7 12.4 158 40-204 8-197 (236)
387 KOG0890|consensus 47.8 1.9E+02 0.0042 32.5 10.7 115 102-220 1666-1799(2382)
388 KOG0276|consensus 47.6 57 0.0012 31.6 6.2 63 130-202 630-692 (794)
389 KOG3783|consensus 47.2 1.9E+02 0.0042 27.4 9.6 71 102-172 444-521 (546)
390 PF09797 NatB_MDM20: N-acetylt 47.1 57 0.0012 29.1 6.1 46 157-202 198-243 (365)
391 PF10602 RPN7: 26S proteasome 47.0 1.5E+02 0.0032 23.6 8.6 29 68-101 37-65 (177)
392 KOG0128|consensus 46.3 3.2E+02 0.0069 27.5 11.1 100 48-154 94-196 (881)
393 KOG1839|consensus 46.3 92 0.002 32.6 7.9 137 62-205 968-1121(1236)
394 KOG1839|consensus 45.4 2.1E+02 0.0045 30.2 10.1 108 97-206 964-1087(1236)
395 KOG4014|consensus 44.6 1.8E+02 0.0039 24.0 10.6 59 88-151 89-154 (248)
396 COG5091 SGT1 Suppressor of G2 44.3 44 0.00096 29.0 4.6 97 119-215 7-119 (368)
397 cd02683 MIT_1 MIT: domain cont 42.8 40 0.00088 23.1 3.5 18 194-211 31-48 (77)
398 COG4455 ImpE Protein of avirul 42.7 1.5E+02 0.0032 25.1 7.3 59 117-176 11-69 (273)
399 PF10345 Cohesin_load: Cohesin 42.7 3.2E+02 0.0068 26.3 15.3 150 48-204 36-207 (608)
400 smart00299 CLH Clathrin heavy 42.4 1.4E+02 0.003 22.1 8.4 29 89-118 24-52 (140)
401 cd02679 MIT_spastin MIT: domai 42.1 62 0.0013 22.4 4.3 15 158-172 5-19 (79)
402 PF08238 Sel1: Sel1 repeat; I 41.6 63 0.0014 17.9 4.7 34 68-101 2-37 (39)
403 COG5091 SGT1 Suppressor of G2 40.7 50 0.0011 28.7 4.4 103 49-151 11-124 (368)
404 PRK15490 Vi polysaccharide bio 39.6 1.9E+02 0.0041 27.9 8.5 52 144-198 45-96 (578)
405 TIGR03504 FimV_Cterm FimV C-te 39.6 60 0.0013 19.7 3.5 25 180-204 3-27 (44)
406 PF09797 NatB_MDM20: N-acetylt 38.8 1.3E+02 0.0029 26.7 7.2 46 86-132 197-242 (365)
407 PHA02537 M terminase endonucle 38.2 1.1E+02 0.0024 25.8 6.0 19 190-208 192-210 (230)
408 PF10345 Cohesin_load: Cohesin 38.1 3.7E+02 0.0081 25.8 10.8 44 157-200 376-428 (608)
409 KOG4279|consensus 37.3 1.6E+02 0.0034 29.6 7.5 127 89-219 260-406 (1226)
410 PF15469 Sec5: Exocyst complex 36.8 2.1E+02 0.0046 22.6 8.2 27 190-216 153-179 (182)
411 PF14929 TAF1_subA: TAF RNA Po 36.8 3.9E+02 0.0084 25.6 11.2 109 117-226 319-428 (547)
412 COG4649 Uncharacterized protei 36.3 2.4E+02 0.0052 23.1 14.0 128 90-220 76-210 (221)
413 KOG4279|consensus 34.3 3.2E+02 0.0069 27.6 9.0 154 21-184 223-405 (1226)
414 cd02678 MIT_VPS4 MIT: domain c 34.2 1.4E+02 0.0031 19.9 6.8 17 124-140 30-46 (75)
415 PF04212 MIT: MIT (microtubule 34.1 1.3E+02 0.0029 19.5 6.6 15 120-134 18-32 (69)
416 PF13812 PPR_3: Pentatricopept 33.0 81 0.0018 16.7 4.0 28 177-204 2-29 (34)
417 PF12753 Nro1: Nuclear pore co 30.7 70 0.0015 29.2 3.9 34 48-83 333-366 (404)
418 KOG2997|consensus 29.7 93 0.002 27.7 4.4 37 183-219 26-62 (366)
419 PF06957 COPI_C: Coatomer (COP 29.4 1.8E+02 0.0038 26.9 6.3 15 47-61 218-232 (422)
420 PF15297 CKAP2_C: Cytoskeleton 28.3 1.6E+02 0.0035 26.4 5.7 50 159-208 120-172 (353)
421 KOG0985|consensus 28.1 7.4E+02 0.016 26.2 13.9 28 47-75 998-1025(1666)
422 PF11817 Foie-gras_1: Foie gra 27.8 2.3E+02 0.005 23.7 6.5 22 113-134 184-205 (247)
423 PF06957 COPI_C: Coatomer (COP 26.9 2.4E+02 0.0053 26.0 6.8 39 187-226 311-349 (422)
424 PF12753 Nro1: Nuclear pore co 26.7 96 0.0021 28.3 4.1 32 158-191 334-365 (404)
425 KOG1464|consensus 26.4 1.8E+02 0.004 25.5 5.5 48 122-170 42-93 (440)
426 cd02681 MIT_calpain7_1 MIT: do 25.8 2.2E+02 0.0048 19.4 6.8 16 120-135 19-34 (76)
427 smart00671 SEL1 Sel1-like repe 25.6 1.2E+02 0.0026 16.2 3.6 11 89-99 22-32 (36)
428 KOG2997|consensus 23.6 1.4E+02 0.0031 26.5 4.4 35 111-145 23-57 (366)
429 PF14689 SPOB_a: Sensor_kinase 23.5 1.7E+02 0.0036 18.9 3.9 29 176-204 23-51 (62)
430 KOG3540|consensus 23.5 5E+02 0.011 24.5 8.0 52 90-141 330-382 (615)
431 smart00745 MIT Microtubule Int 21.4 2.6E+02 0.0055 18.5 7.1 16 124-139 32-47 (77)
432 PF02064 MAS20: MAS20 protein 21.2 1.7E+02 0.0037 22.0 3.9 35 111-145 67-101 (121)
433 cd02656 MIT MIT: domain contai 21.1 2.6E+02 0.0056 18.5 6.4 14 121-134 20-33 (75)
434 KOG2581|consensus 21.0 1.8E+02 0.004 26.8 4.7 43 109-152 249-291 (493)
435 COG2909 MalT ATP-dependent tra 20.8 9.1E+02 0.02 24.7 16.1 104 47-155 429-551 (894)
436 PF02184 HAT: HAT (Half-A-TPR) 20.6 1.8E+02 0.0039 16.5 3.4 23 158-181 3-25 (32)
437 PF06855 DUF1250: Protein of u 20.6 71 0.0015 19.5 1.5 34 172-205 11-44 (46)
438 KOG0276|consensus 20.2 8.4E+02 0.018 24.0 10.3 124 48-200 622-745 (794)
No 1
>PLN02789 farnesyltranstransferase
Probab=100.00 E-value=9.3e-37 Score=266.95 Aligned_cols=205 Identities=27% Similarity=0.528 Sum_probs=187.3
Q ss_pred ccccccchhhhhccCCCCCCCCCCchhHhhhhhhh--------------hcHHHHHHHHHhHHhcCCCchhHhhhHHHHH
Q psy4772 12 IWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKC--------------NLFSDELSYIEGLISHDVRNNSAWTQRYFVI 77 (235)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~--------------~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l 77 (235)
.++.|..+++|+||+|++|++|++|++.|.|++.+ +..++|+..++++|+++|+++.+|+.||.++
T Consensus 2 ~~~~~~~~~~~~d~~p~~~~~~~~~~~~i~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL 81 (320)
T PLN02789 2 EWVPLSQRPEWADVTPIPQDDGPNPVVPIAYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCL 81 (320)
T ss_pred CCCCcccCCCcCCccccCCCCCCCcccceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHH
Confidence 45668888899999999999999999999999654 2459999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccccc--HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh
Q psy4772 78 NHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS--ERALALTADAITMNPANYTVWQYRREILKALN 155 (235)
Q Consensus 78 ~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~--~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~ 155 (235)
..+|. .+++|+..++++++.+|+++.+|+ .||.++..+|.. ++++.+++++|+++|+++.||++|++++..++
T Consensus 82 ~~L~~----~l~eeL~~~~~~i~~npknyqaW~-~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~ 156 (320)
T PLN02789 82 EALDA----DLEEELDFAEDVAEDNPKNYQIWH-HRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG 156 (320)
T ss_pred HHcch----hHHHHHHHHHHHHHHCCcchHHhH-HHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh
Confidence 99873 245899999999999999999995 688999988874 78999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc---CCc----hHHHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 156 KDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM---GEP----DEELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 156 ~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l---~~~----~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
. +++|+.+++++|++||+|.++|++|++++.++ |++ ++++++++++|.++|+|.++|+|++.++..
T Consensus 157 ~-~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 157 G-WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred h-HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 5 99999999999999999999999999999876 333 579999999999999999999999999965
No 2
>KOG0530|consensus
Probab=99.95 E-value=2.8e-28 Score=202.06 Aligned_cols=203 Identities=29% Similarity=0.546 Sum_probs=177.3
Q ss_pred ccccchhhhhccCCCCCCCCCCchhHhhhhhhhhc----H----------HHHHHHHHhHHhcCCCchhHhhhHHHHHhh
Q psy4772 14 VYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNL----F----------SDELSYIEGLISHDVRNNSAWTQRYFVINH 79 (235)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~----~----------~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~ 79 (235)
+.|..+-+|+||+|++|++|++|++.|+|++.|.+ | ..|+.+.+.+|.++|-|+.+|..|..|+..
T Consensus 10 ~~y~d~~dw~Dv~PlpqdDg~npvv~I~Yte~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~ 89 (318)
T KOG0530|consen 10 VLYSDRYDWSDVTPLPQDDGPNPVVKIAYTEDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRH 89 (318)
T ss_pred hhhhhhcccccCccCCCCCCCCcceEeeechhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 56666668999999999999999999999987632 1 678899999999999999999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH-HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhH
Q psy4772 80 TTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE-RALALTADAITMNPANYTVWQYRREILKALNKDL 158 (235)
Q Consensus 80 ~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~-eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~ 158 (235)
++. .+.+.++....+++-+|+++..|.+++ .+....|... ..|++++.+|..+.++++||.||.|++..++ .|
T Consensus 90 l~~----dL~~El~~l~eI~e~npKNYQvWHHRr-~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~-~~ 163 (318)
T KOG0530|consen 90 LMS----DLNKELEYLDEIIEDNPKNYQVWHHRR-VIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFK-DY 163 (318)
T ss_pred hHH----HHHHHHHHHHHHHHhCccchhHHHHHH-HHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHh-hH
Confidence 864 467889999999999999999996544 8888888877 8999999999999999999999999999998 59
Q ss_pred HHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC------chHHHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE------PDEELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 159 eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~------~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
+.++.++.++|+.|-.|-+||++|-+++..... .+.++.+..+.|.+.|.|.|+|.|+.=++..
T Consensus 164 ~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 164 EDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 999999999999999999999999988866333 4678899999999999999999999888764
No 3
>PLN02789 farnesyltranstransferase
Probab=99.95 E-value=1.1e-27 Score=209.72 Aligned_cols=134 Identities=31% Similarity=0.595 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc-ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHh-HHHHHHHHH
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE-KSERALALTADAITMNPANYTVWQYRREILKALNKD-LHQELKYIG 166 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~-~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~-~eeal~~~~ 166 (235)
++|+..+.++|+++|.++++|+ .||.++..+| .+++|+.+++++++.+|+++++|+||++++.++++. .++++.+++
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~-~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~ 132 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWH-FRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTR 132 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHH-HHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHH
Confidence 4899999999999999999995 6889999998 589999999999999999999999999999999842 378999999
Q ss_pred HHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 167 EKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 167 ~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
++|+.+|+|+++|++|++++..+|++++|+++++++|++||+|.+||++|++++..+
T Consensus 133 kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 133 KILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999766
No 4
>KOG4626|consensus
Probab=99.92 E-value=2.4e-24 Score=195.75 Aligned_cols=185 Identities=11% Similarity=0.091 Sum_probs=170.4
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH-----------------------------HHHHHHHHHHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP-----------------------------EVIQREIDYCRD 97 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e-----------------------------~~~~~Al~~~~k 97 (235)
|..-.|++.|++|++++|..++|+.++|.|+...+.|+. +.++=||..|++
T Consensus 232 Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 232 GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHH
Confidence 567888999999999999999999999999888887764 357789999999
Q ss_pred HHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 98 al~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
+|.+.|+++.|++ ++|.++...|+..||..+|.++|.++|.++++.+++|.++.+.|+ +++|..+|.++++.+|....
T Consensus 312 al~~~P~F~~Ay~-NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~-~e~A~~ly~~al~v~p~~aa 389 (966)
T KOG4626|consen 312 ALELQPNFPDAYN-NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK-IEEATRLYLKALEVFPEFAA 389 (966)
T ss_pred HHhcCCCchHHHh-HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhChhhhh
Confidence 9999999999995 799999999999999999999999999999999999999999995 89999999999999999999
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
+.++++.++..+|++++|+.+|+.||.++|..+.++.++|..+.-+|+.++|..-|
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876554
No 5
>KOG4626|consensus
Probab=99.91 E-value=1.4e-23 Score=190.82 Aligned_cols=170 Identities=8% Similarity=0.076 Sum_probs=101.5
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|...+|..+|.+||.++|..+++.+++|.++..+|.++ +|...|.++|...|.+..+++ ++|.+++..|++++|
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e-----~A~~ly~~al~v~p~~aaa~n-NLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIE-----EATRLYLKALEVFPEFAAAHN-NLASIYKQQGNLDDA 407 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccch-----HHHHHHHHHHhhChhhhhhhh-hHHHHHHhcccHHHH
Confidence 44555555555555555555555555555555555543 455666666666666666663 455666666666666
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
+.+|+.+|++.|..++++.++|.+|..+|+ ...|+.+|.+||.++|-...|+.+++.++...|+..+|++.|+.++.++
T Consensus 408 i~~YkealrI~P~fAda~~NmGnt~ke~g~-v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 408 IMCYKEALRIKPTFADALSNMGNTYKEMGD-VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHhcCchHHHHHHhcchHHHHhhh-HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 666666666666666666666666666663 5666666666666666666666666666666666666666666666666
Q ss_pred CCChHHhHHHHHHHhhc
Q psy4772 207 AKNYHAWQHRQWVINLL 223 (235)
Q Consensus 207 p~n~~aw~~r~~~l~~l 223 (235)
|+++.|++++..+++++
T Consensus 487 PDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 487 PDFPDAYCNLLHCLQIV 503 (966)
T ss_pred CCCchhhhHHHHHHHHH
Confidence 66666666666655543
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=5.4e-22 Score=188.11 Aligned_cols=180 Identities=9% Similarity=0.029 Sum_probs=167.9
Q ss_pred hcHHHHHHHHHhHHhc---CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccccc
Q psy4772 47 NLFSDELSYIEGLISH---DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~---~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~ 123 (235)
+.|++|+.+|++++.. .|..+.+|..+|.++..+|+++ +|+..|++++.++|++..+| +.+|.++...|++
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~-----eA~~~~~kal~l~P~~~~~~-~~la~~~~~~g~~ 381 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL-----EALADLSKSIELDPRVTQSY-IKRASMNLELGDP 381 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCCcHHHH-HHHHHHHHHCCCH
Confidence 5789999999999986 5889999999999999999875 79999999999999999999 6899999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
++|+..++++++++|+++.+|+++|.++..+| ++++|+.+|+++++++|++..+|.++|.++..+|++++|+..+++++
T Consensus 382 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG-EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 59999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 204 AQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 204 ~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
..+|+++.+|.++|.++..+|+..+++-.|
T Consensus 461 ~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 461 KNFPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred HhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999999999999999887765433
No 7
>KOG1126|consensus
Probab=99.88 E-value=2.3e-22 Score=184.05 Aligned_cols=180 Identities=20% Similarity=0.209 Sum_probs=171.3
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
++.+.|+.+|.+||++||.++=++..+|-=+..+.+|+ +|..+|++||..+|++|.|| |.+|.++.+.|+++.|
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d-----~a~~~fr~Al~~~~rhYnAw-YGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFD-----KAMKSFRKALGVDPRHYNAW-YGLGTVYLKQEKLEFA 508 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHH-----hHHHHHHhhhcCCchhhHHH-HhhhhheeccchhhHH
Confidence 67899999999999999999999999998777776664 89999999999999999999 8999999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
.-.|++|+++||.+.....+.|.++.++|+ .++|+.++++|+.++|+|+..-++++.++..++++++|+..++..-++-
T Consensus 509 e~~fqkA~~INP~nsvi~~~~g~~~~~~k~-~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 509 EFHFQKAVEINPSNSVILCHIGRIQHQLKR-KDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHHHhhhcCCccchhHHhhhhHHHHHhhh-hhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence 999999999999999999999999999995 8999999999999999999999999999999999999999999999999
Q ss_pred CCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 207 AKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 207 p~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
|++.+.++-.|.++..+|+++.|...+
T Consensus 588 P~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 588 PQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred cchHHHHHHHHHHHHHHccchHHHHhh
Confidence 999999999999999999998776554
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.8e-21 Score=184.64 Aligned_cols=185 Identities=13% Similarity=0.079 Sum_probs=168.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHH---------------------------------------
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE--------------------------------------- 86 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~--------------------------------------- 86 (235)
.|++++|+..++++|+++|++..+|+.+|.++..+|+++++
T Consensus 173 l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~ 252 (615)
T TIGR00990 173 LGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILE 252 (615)
T ss_pred hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999886432
Q ss_pred --------------------------------------------------------HHHHHHHHHHHHHHh---CCCCCc
Q psy4772 87 --------------------------------------------------------VIQREIDYCRDKIQI---APKNES 107 (235)
Q Consensus 87 --------------------------------------------------------~~~~Al~~~~kal~l---~p~~~~ 107 (235)
.+++|+..|.+++.+ .|....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~ 332 (615)
T TIGR00990 253 TKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAI 332 (615)
T ss_pred cCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHH
Confidence 245677778888876 477778
Q ss_pred hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHH
Q psy4772 108 PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVE 187 (235)
Q Consensus 108 aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~ 187 (235)
+| +.+|.++..+|++++|+..++++++++|.+..+|..+|.++..+| ++++|+..++++++.+|+++.+|+++|.++.
T Consensus 333 a~-~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 333 AL-NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG-DPDKAEEDFDKALKLNSEDPDIYYHRAQLHF 410 (615)
T ss_pred HH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 88 578999999999999999999999999999999999999999999 5999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 188 WMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 188 ~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
.+|++++|+.+|++++.++|++..+|.++|.++..+|+..++...
T Consensus 411 ~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999988766543
No 9
>KOG0530|consensus
Probab=99.88 E-value=7.9e-22 Score=163.82 Aligned_cols=162 Identities=29% Similarity=0.587 Sum_probs=143.2
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc-ccHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE-KSER 125 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~-~~~e 125 (235)
.+|.+.+.+|+.+|..+... .+|++.+..+|.+||.+++.|.|++ .|+..++ +..+
T Consensus 40 e~fr~~m~YfRAI~~~~E~S----------------------~RAl~LT~d~i~lNpAnYTVW~yRr-~iL~~l~~dL~~ 96 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKS----------------------PRALQLTEDAIRLNPANYTVWQYRR-VILRHLMSDLNK 96 (318)
T ss_pred hhHHHHHHHHHHHHhccccC----------------------HHHHHHHHHHHHhCcccchHHHHHH-HHHHHhHHHHHH
Confidence 47899999888877754332 4799999999999999999998876 7776654 6899
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHH-HHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLH-QELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~e-eal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
.++..+.+++-+|+++++|+||..+.+-+| +.. .++++++.+|..+.||+|+|.||.|++...+.++.++.++...|+
T Consensus 97 El~~l~eI~e~npKNYQvWHHRr~ive~l~-d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 97 ELEYLDEIIEDNPKNYQVWHHRRVIVELLG-DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHhc-CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 566 899999999999999999999999999999999999999999999
Q ss_pred hCCCChHHhHHHHHHHh-hcCCccccccc
Q psy4772 205 QDAKNYHAWQHRQWVIN-LLDDDDRGVLE 232 (235)
Q Consensus 205 ldp~n~~aw~~r~~~l~-~l~~~~~~~~~ 232 (235)
.|-.|.|||.+|-+++. -.|-.++++++
T Consensus 176 ~Di~NNSAWN~Ryfvi~~~~~~~~~~~le 204 (318)
T KOG0530|consen 176 EDIRNNSAWNQRYFVITNTKGVISKAELE 204 (318)
T ss_pred HhhhccchhheeeEEEEeccCCccHHHHH
Confidence 99999999999999984 45655545543
No 10
>PRK12370 invasion protein regulator; Provisional
Probab=99.87 E-value=4.6e-21 Score=179.77 Aligned_cols=184 Identities=11% Similarity=0.060 Sum_probs=167.3
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCC----CHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQF----TPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~----~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
+.+++|+.+|++|++++|+++.+|..+|.++..++.. ....+++|+..+.++++++|+++.+| ..+|.++...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~-~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQAL-GLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHccC
Confidence 4578999999999999999999999999987755431 23457899999999999999999999 589999999999
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
+++|+..++++++++|+++.+|+++|.++...|+ +++|+..++++++++|.++.+++.++.++...|++++|+..++++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~-~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ-LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999995 999999999999999999988888888888899999999999999
Q ss_pred HHhC-CCChHHhHHHHHHHhhcCCccccccc
Q psy4772 203 LAQD-AKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 203 i~ld-p~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
+..+ |+++.++.++|.++..+|+.++|.-.
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~ 463 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKL 463 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9885 88999999999999999998776543
No 11
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.83 E-value=1.2e-19 Score=141.80 Aligned_cols=126 Identities=12% Similarity=0.120 Sum_probs=115.8
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 93 ~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
..++++++++|++ + +.+|.++...|++++|+.+|.+++.++|.++.+|+.+|.++..+|+ +++|+.+|+++++++
T Consensus 14 ~~~~~al~~~p~~---~-~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVDPET---V-YASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE-YTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcCHHH---H-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcC
Confidence 5788999999986 4 4678999999999999999999999999999999999999999995 999999999999999
Q ss_pred CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 173 SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 173 P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
|.++.+|+++|.++..+|++++|+..|++|+.++|+++..|.+++.++..+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988654
No 12
>KOG1126|consensus
Probab=99.83 E-value=1.7e-20 Score=171.89 Aligned_cols=165 Identities=19% Similarity=0.227 Sum_probs=154.8
Q ss_pred HHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCC
Q psy4772 59 LISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNP 138 (235)
Q Consensus 59 aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P 138 (235)
.+..+|..|+.|--.|.|+..++++ +.||.+|++|+++||++.=+++ .+|-=+...+.++.|..+|.+||..+|
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh-----~~Aik~f~RAiQldp~faYayT-LlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDH-----DTAIKCFKRAIQLDPRFAYAYT-LLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHH-----HHHHHHHHHhhccCCccchhhh-hcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 3444888899999999999988876 4899999999999999999996 688888889999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 139 ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 139 ~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
.++-||+.+|.+|.+.++ ++.|..+|++|+++||.|.....+.|.++.++|+.++|++.+++|+-+||+|+.+-++++.
T Consensus 487 rhYnAwYGlG~vy~Kqek-~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEK-LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hhhHHHHhhhhheeccch-hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 999999999999999996 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccccc
Q psy4772 219 VINLLDDDDRGV 230 (235)
Q Consensus 219 ~l~~l~~~~~~~ 230 (235)
++..+++..++-
T Consensus 566 il~~~~~~~eal 577 (638)
T KOG1126|consen 566 ILFSLGRYVEAL 577 (638)
T ss_pred HHHhhcchHHHH
Confidence 999999987764
No 13
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.83 E-value=1.7e-18 Score=141.23 Aligned_cols=178 Identities=12% Similarity=0.077 Sum_probs=165.5
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.+++++|+..++++++.+|.+..++..+|.++..+|+++ +|+..+.+++.++|.+..++ +.+|.++...|++++
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELE-----KAEDSFRRALTLNPNNGDVL-NNYGTFLCQQGKYEQ 117 (234)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhhCCCCHHHH-HHHHHHHHHcccHHH
Confidence 478999999999999999999999999999999999875 79999999999999999999 589999999999999
Q ss_pred HHHHHHHHHHcC--CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 126 ALALTADAITMN--PANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 126 Al~~~~~al~l~--P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
|+..+.+++... |....++..++.++...| ++++|...++++++.+|.+..+|..++.++...|++++|+..+++++
T Consensus 118 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 196 (234)
T TIGR02521 118 AMQQFEQAIEDPLYPQPARSLENAGLCALKAG-DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQ 196 (234)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999864 667789999999999999 59999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 204 AQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 204 ~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
.+.|.+...+...+.+....|+.+++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 197 QTYNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999998888888888776653
No 14
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=4.1e-19 Score=166.62 Aligned_cols=173 Identities=12% Similarity=0.034 Sum_probs=159.7
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
+++.+|+..+++|++++|+++.+|..+|.++...|+++ +|+..|+++++++|+++.+| +.+|.++...|++++|
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~-----~A~~~~~~Al~l~P~~~~a~-~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI-----VGSLLFKQANLLSPISADIK-YYYGWNLFMAGQLEEA 391 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHCCCHHHH
Confidence 34799999999999999999999999999999999875 79999999999999999999 6899999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN-SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
+..++++++++|.++.++..++.++...|+ +++|+..++++++.+ |.++.++..+|.++..+|++++|...+.++...
T Consensus 392 i~~~~~Al~l~P~~~~~~~~~~~~~~~~g~-~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 392 LQTINECLKLDPTRAAAGITKLWITYYHTG-IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhccC-HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 999999999999999888888888888884 999999999999885 889999999999999999999999999999999
Q ss_pred CCCChHHhHHHHHHHhhcCCc
Q psy4772 206 DAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~~l~~~ 226 (235)
.|.+..++..++.++..+|+.
T Consensus 471 ~~~~~~~~~~l~~~~~~~g~~ 491 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNSER 491 (553)
T ss_pred cchhHHHHHHHHHHHhccHHH
Confidence 999999988888777666643
No 15
>KOG0529|consensus
Probab=99.81 E-value=3.4e-19 Score=156.35 Aligned_cols=171 Identities=21% Similarity=0.532 Sum_probs=149.9
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCC---CCH----HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQ---FTP----EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~---~~e----~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
+++++...+.|..||+.+.+|+.|..++....- .++ +.+.+.+.+...+|+.||+.+.+|++ |.+++++.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~h-R~w~L~~~p~ 124 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHH-RKWVLQKNPH 124 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHH-HHHHHHhCCC
Confidence 889999999999999999999888877765432 222 35678889999999999999999965 5599987764
Q ss_pred --cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCChHHhHHHHHHHHH------cCC
Q psy4772 123 --SERALALTADAITMNPANYTVWQYRREILKALNKD---LHQELKYIGEKIKENSKNYQVWRHRQIIVEW------MGE 191 (235)
Q Consensus 123 --~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~---~eeal~~~~~al~~~P~n~~aw~~r~~~l~~------l~~ 191 (235)
+...|..++++|+.||+++++|+||.++....... ..+++.++.++|..++.|++||++|..++.. .|+
T Consensus 125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~ 204 (421)
T KOG0529|consen 125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGN 204 (421)
T ss_pred chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCc
Confidence 69999999999999999999999999999988754 6899999999999999999999999999974 221
Q ss_pred ------chHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 192 ------PDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 192 ------~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
...+++...+|+..||.|.++|+|..|++.
T Consensus 205 ~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~ 240 (421)
T KOG0529|consen 205 FMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLG 240 (421)
T ss_pred cCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhc
Confidence 468899999999999999999999999994
No 16
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.81 E-value=2.4e-19 Score=140.09 Aligned_cols=127 Identities=10% Similarity=-0.019 Sum_probs=119.4
Q ss_pred HHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHH
Q psy4772 53 LSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTAD 132 (235)
Q Consensus 53 l~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~ 132 (235)
...++++|+++|++ ++.+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++|+.+|++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~-----~A~~~~~~al~~~P~~~~a~-~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYS-----RAVIDFSWLVMAQPWSWRAH-IALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCCcHHHH-HHHHHHHHHHhhHHHHHHHHHH
Confidence 35789999999996 778999999999885 79999999999999999999 6899999999999999999999
Q ss_pred HHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc
Q psy4772 133 AITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 133 al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l 189 (235)
+++++|+++.+|+++|.++..+|+ +++|+..|++++++.|.++..|.+++.+...+
T Consensus 84 Al~l~p~~~~a~~~lg~~l~~~g~-~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 84 ALMLDASHPEPVYQTGVCLKMMGE-PGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999995 99999999999999999999999999887654
No 17
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.81 E-value=1.2e-18 Score=151.58 Aligned_cols=177 Identities=12% Similarity=0.099 Sum_probs=129.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++|+++|+++.+|+++|.++..+|+++ +|++.|+++++++|++..+| +++|.++...|++++
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~-----~A~~~~~~Al~l~P~~~~a~-~~lg~~l~~~g~~~e 150 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD-----AAYEAFDSVLELDPTYNYAY-LNRGIALYYGGRYEL 150 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHCCCHHH
Confidence 467888888888888888888888888888888888775 68888888888888888888 578888888888888
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHH--H----HHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEE--L----ALT 199 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~A--l----~~~ 199 (235)
|+..+++++.++|+++...... .+....+ ++++|+..+++++...+.. .|. .+.+...+|+..++ + +.+
T Consensus 151 A~~~~~~al~~~P~~~~~~~~~-~l~~~~~-~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~~~~~~~~~~ 225 (296)
T PRK11189 151 AQDDLLAFYQDDPNDPYRALWL-YLAESKL-DPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEETLMERLKAGA 225 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHH-HHHHccC-CHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHHHHHHHHhcC
Confidence 8888888888888887322211 1223334 4788888887766554333 233 34555556665433 2 222
Q ss_pred HHHHHhCCCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 200 AAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 200 ~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
+.+++++|+...+|+++|.++..+|+.++|.-.|
T Consensus 226 ~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~ 259 (296)
T PRK11189 226 TDNTELAERLCETYFYLAKYYLSLGDLDEAAALF 259 (296)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3345778888899999999999999998887655
No 18
>KOG0529|consensus
Probab=99.81 E-value=6.7e-19 Score=154.47 Aligned_cols=150 Identities=21% Similarity=0.472 Sum_probs=132.4
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc-----------ccHHHHHHHHHHHHcCCCChHHH
Q psy4772 76 VINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE-----------KSERALALTADAITMNPANYTVW 144 (235)
Q Consensus 76 ~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~-----------~~~eAl~~~~~al~l~P~~~~aw 144 (235)
.....|.|++ ++++...+++..||.++.+||++++.+...+- ..++.|.....+|+.||+++.+|
T Consensus 37 ~~r~~~~yd~----e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW 112 (421)
T KOG0529|consen 37 KKREAKEYDE----EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAW 112 (421)
T ss_pred HHHhccccch----HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHH
Confidence 3445677774 78999999999999999999999877766544 36888999999999999999999
Q ss_pred HHHHHHHHHhhHh-HHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC----chHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 145 QYRREILKALNKD-LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE----PDEELALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 145 ~~r~~~l~~l~~~-~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~----~~~Al~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
++|.+++.+.... +..++.+|+++++.||+|+++|.+|.++.....+ ..+++++++++|..++.|+|||+||.++
T Consensus 113 ~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~l 192 (421)
T KOG0529|consen 113 HHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLL 192 (421)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHH
Confidence 9999999987643 8999999999999999999999999999977665 4799999999999999999999999999
Q ss_pred H-hhcCCcccc
Q psy4772 220 I-NLLDDDDRG 229 (235)
Q Consensus 220 l-~~l~~~~~~ 229 (235)
+ .+.+++..|
T Consensus 193 L~~l~~~~~~g 203 (421)
T KOG0529|consen 193 LSTLHPKEADG 203 (421)
T ss_pred HHHhccccccC
Confidence 9 577777666
No 19
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.81 E-value=5.4e-19 Score=153.70 Aligned_cols=170 Identities=13% Similarity=0.051 Sum_probs=130.1
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+..|+++|+++|++..+|.++|.++...|+++ +|++.|.++++++|+++... . ...+....++++
T Consensus 110 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~-----eA~~~~~~al~~~P~~~~~~-~-~~~l~~~~~~~~ 182 (296)
T PRK11189 110 QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYE-----LAQDDLLAFYQDDPNDPYRA-L-WLYLAESKLDPK 182 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCCHHHH-H-HHHHHHccCCHH
Confidence 3589999999999999999999999999999999999875 79999999999999998321 1 113445677899
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHh-----HHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKD-----LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~-----~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
+|+..+.+++...+.....| +.+...+|+. ++.+...++..++++|+...+|+++|.++..+|++++|+.+|
T Consensus 183 ~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~ 259 (296)
T PRK11189 183 QAKENLKQRYEKLDKEQWGW---NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALF 259 (296)
T ss_pred HHHHHHHHHHhhCCccccHH---HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999988776644433333 4555556531 222223334455788889999999999999999999999999
Q ss_pred HHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 200 AAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 200 ~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
++|+.++|.+.--+.+...-+..+.
T Consensus 260 ~~Al~~~~~~~~e~~~~~~e~~~~~ 284 (296)
T PRK11189 260 KLALANNVYNFVEHRYALLELALLG 284 (296)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHH
Confidence 9999999866665555444444443
No 20
>KOG1155|consensus
Probab=99.80 E-value=1.7e-18 Score=153.51 Aligned_cols=178 Identities=16% Similarity=0.192 Sum_probs=161.8
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
+.-++|+.+|.+||++||+...+|...|-=+..++... .|++.|++|+.++|.++.|| |.+|..+..++...=|
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~-----AAi~sYRrAvdi~p~DyRAW-YGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTH-----AAIESYRRAVDINPRDYRAW-YGLGQAYEIMKMHFYA 417 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccH-----HHHHHHHHHHhcCchhHHHH-hhhhHHHHHhcchHHH
Confidence 34599999999999999999999999999999998774 79999999999999999999 8999999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH--
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA-- 204 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~-- 204 (235)
|-+|++|+++.|.+.-.|..+|.||.++++ .++|+.||.+++....-+..+++.+|.++..+++.++|..+|++-++
T Consensus 418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~-~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 418 LYYFQKALELKPNDSRLWVALGECYEKLNR-LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHhcc-HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999995 89999999999999999999999999999999999999999999988
Q ss_pred -----hCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 205 -----QDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 205 -----ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
.+|.-..+-.+++.-...++++.+++.
T Consensus 497 ~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 497 ELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 566656665556655567777766643
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=4.2e-18 Score=162.66 Aligned_cols=184 Identities=9% Similarity=-0.011 Sum_probs=107.3
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHH----------------------------HHHHHHHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE----------------------------VIQREIDYCRD 97 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~----------------------------~~~~Al~~~~k 97 (235)
.|++++|+..++++++++|+++.+|..+|.++..+|+++++ ++++|+..+.+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46777777777777777777777777777777777765421 12233333333
Q ss_pred HHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHH----HHHHHHHHHHhCC
Q psy4772 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQ----ELKYIGEKIKENS 173 (235)
Q Consensus 98 al~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~ee----al~~~~~al~~~P 173 (235)
++..+|.....+....|.++...|++++|+..+.++++++|+++.+++.+|.++..+|+ +++ |+..++++++++|
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~-~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR-SREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-chhhHHHHHHHHHHHHhhCC
Confidence 33333322221111223444455556666666666666666666666666666666663 443 5666666666666
Q ss_pred CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 174 KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 174 ~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
++..+|..+|.++...|++++|+..+++++.++|.++.++.+++.++..+|+.+++.
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~ 338 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAAS 338 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 666666666666666666666666666666666666666666666665555554443
No 22
>KOG1155|consensus
Probab=99.80 E-value=2.9e-18 Score=152.07 Aligned_cols=186 Identities=15% Similarity=0.195 Sum_probs=165.9
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcC----------------CCC-------------HHHHHHHHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTT----------------QFT-------------PEVIQREIDYCR 96 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~----------------~~~-------------e~~~~~Al~~~~ 96 (235)
..+|++|+..|+.+.+.+|...+-...-..+++-.. +|. ...+++|+.+|+
T Consensus 275 ~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFk 354 (559)
T KOG1155|consen 275 QRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFK 354 (559)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHH
Confidence 358899999999999999987654444444444322 221 146899999999
Q ss_pred HHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 97 DKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 97 kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
+||++||+...+|+ ..|-=+.++.....|+.+|.+|++++|.++-||+.+|.+|.-++ ...=|+-++++|++.-|.+.
T Consensus 355 RALkLNp~~~~aWT-LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~-Mh~YaLyYfqkA~~~kPnDs 432 (559)
T KOG1155|consen 355 RALKLNPKYLSAWT-LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK-MHFYALYYFQKALELKPNDS 432 (559)
T ss_pred HHHhcCcchhHHHH-HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc-chHHHHHHHHHHHhcCCCch
Confidence 99999999999996 79999999999999999999999999999999999999999999 58999999999999999999
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
-.|.-+|.++.++++.++|+.||++|+.....+.+++..+|.+..-|++.+++--.|
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988776554
No 23
>KOG0547|consensus
Probab=99.80 E-value=1.1e-18 Score=155.64 Aligned_cols=177 Identities=15% Similarity=0.120 Sum_probs=151.5
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
.+-++-..+|++|..+||.|+++|+|||.+.+.+++|+ +|+..|+|+++++|++.-++ ..++.++.+.++.+++
T Consensus 374 ~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e-----~A~aDF~Kai~L~pe~~~~~-iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 374 NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYE-----EAIADFQKAISLDPENAYAY-IQLCCALYRQHKIAES 447 (606)
T ss_pred hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHH-----HHHHHHHHHhhcChhhhHHH-HHHHHHHHHHHHHHHH
Confidence 44577888888999999999999999999888887764 68889999999999999888 5888888888889999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC------ChHHhHHHHHHHHH-cCCchHHHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK------NYQVWRHRQIIVEW-MGEPDEELALT 199 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~------n~~aw~~r~~~l~~-l~~~~~Al~~~ 199 (235)
...|+.+++..|.++.+++.-+.++...++ |+.|++.|+.+|++.|. |+..+.|++.++.+ .+++..|++++
T Consensus 448 m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq-Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll 526 (606)
T KOG0547|consen 448 MKTFEEAKKKFPNCPEVYNLFAEILTDQQQ-FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLL 526 (606)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhHHh-HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHH
Confidence 999999999999999999999999988884 89999999999999998 88888888877744 56788899999
Q ss_pred HHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 200 AAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 200 ~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
++||++||+-..|+..+|.+....|+.++|+
T Consensus 527 ~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 527 RKAIELDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHccCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999888888887778777765
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=3.5e-18 Score=168.30 Aligned_cols=179 Identities=10% Similarity=0.040 Sum_probs=140.8
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+..|++++...|. ..+++..|.++...|++. +|+..|.++++++|.+.... ..++..+...|+++
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~-----eA~~~l~qAL~l~P~~~~l~-~~La~~l~~~Gr~~ 593 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGA-----ARDRWLQQAEQRGLGDNALY-WWLHAQRYIPGQPE 593 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhcCCccHHHH-HHHHHHHHhCCCHH
Confidence 356778888888887666554 455777787777777653 68888888888888876655 34444455568888
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+|+..+++++.++|+ ..+|+++|.++.++|+ +++|+.++++++.++|+++.+++++|.++...|++++|++.+++|++
T Consensus 594 eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~-~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 594 LALNDLTRSLNIAPS-ANAYVARATIYRQRHN-VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888886 8888888888888884 88888888888888888888888888888888888888888888888
Q ss_pred hCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 205 QDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 205 ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
++|+++.+|.++|+++..+|+.++++-.
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888888888887766543
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=4.1e-18 Score=167.88 Aligned_cols=170 Identities=9% Similarity=0.010 Sum_probs=158.8
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+.+++++++.+|++...+..++..+..+|+++ +|+..|.++++++|+ +.+| +.+|.++...|+++
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~-----eAl~~~~~AL~l~P~-~~a~-~~LA~~l~~lG~~d 626 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPE-----LALNDLTRSLNIAPS-ANAY-VARATIYRQRHNVP 626 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHHhCCC-HHHH-HHHHHHHHHCCCHH
Confidence 3589999999999999999999988888777777778875 799999999999996 8899 68999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+|+.++.+++.++|+++.+++++|.++...| .+++|+..++++++++|.++.+|+++|+++..+|++++|+.++++|++
T Consensus 627 eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G-~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 627 AAVSDLRAALELEPNNSNYQAALGYALWDSG-DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 499999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHhHHHHHHHhh
Q psy4772 205 QDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 205 ldp~n~~aw~~r~~~l~~ 222 (235)
++|+++..-.-.|++...
T Consensus 706 l~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 706 DIDNQALITPLTPEQNQQ 723 (987)
T ss_pred cCCCCchhhhhhhHHHHH
Confidence 999999998888877644
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=7.5e-18 Score=160.95 Aligned_cols=178 Identities=7% Similarity=-0.010 Sum_probs=105.0
Q ss_pred hcHHHHHHHHHhHHhcCCC-chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 47 NLFSDELSYIEGLISHDVR-NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~-~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
|++++|+..++++++.+|. +...+..++.++...|++ ++|+..+.++++++|+++.++ +.+|.++...|++++
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~-----~eA~~~~~~al~~~p~~~~~~-~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKY-----QEAIQTGESALARGLDGAALR-RSLGLAYYQSGRSRE 264 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCH-----HHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHcCCchh
Confidence 3444444444444444432 222223334444444443 256666666666666666666 356666666666654
Q ss_pred ----HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 126 ----ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 126 ----Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
|+..++++++++|+++.++..+|.++...| ++++|+..++++++++|.++.++.+++.++...|++++|+..+++
T Consensus 265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g-~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG-QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566666666666666666666666666666 366666666666666666666666666666666666666666666
Q ss_pred HHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 202 ILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 202 ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
++..+|.+..++.+++.++..+|+.++|.-
T Consensus 344 al~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHHhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 666666666555555666666666555543
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=1.2e-17 Score=168.49 Aligned_cols=180 Identities=11% Similarity=0.076 Sum_probs=144.2
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCch--h----------h-HH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESP--W----------N-YL 112 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~a--w----------~-~~ 112 (235)
.|++++|+..|+++|+.+|+++.++..+|.++..+|+++ +|+..|.++++++|++... | . ..
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~-----eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRA-----RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 478999999999999999999999999999999999875 6888888888888877642 2 0 12
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH------
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV------ 186 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l------ 186 (235)
+|.++...|++++|+..|++++.++|.+..++..+|.++...| ++++|+.+|+++++++|.+..++..++.++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g-~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK-DYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 3666777788888888888888888888888888888888888 488888888888888888887776655443
Q ss_pred ------------------------------------HHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 187 ------------------------------------EWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 187 ------------------------------------~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
...|++++|+..+++++.++|+++.+++.++.++..+|+..+++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 24577788888888888888888888888888887777776654
Q ss_pred c
Q psy4772 231 L 231 (235)
Q Consensus 231 ~ 231 (235)
-
T Consensus 516 ~ 516 (1157)
T PRK11447 516 A 516 (1157)
T ss_pred H
Confidence 3
No 28
>KOG0547|consensus
Probab=99.78 E-value=6.1e-18 Score=150.82 Aligned_cols=173 Identities=17% Similarity=0.144 Sum_probs=162.2
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|+..+|...|+++|+++|.+...+..||.++....+- ++-..+|++|..+||+++..+ |.||.+...++++++|
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~-----~~~~~~F~~A~~ldp~n~dvY-yHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQS-----EKMWKDFNKAEDLDPENPDVY-YHRGQMRFLLQQYEEA 413 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhcc-----HHHHHHHHHHHhcCCCCCchh-HhHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999887654 467899999999999999999 7899999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
+..|+++++++|++..++..++.++.+.++ ++++...|+.+++++|..+..++.-+-++...++++.|++.|++||++.
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k-~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHK-IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999995 9999999999999999999999999999999999999999999999999
Q ss_pred CC------ChHHhHHHHHHH-hhcCCc
Q psy4772 207 AK------NYHAWQHRQWVI-NLLDDD 226 (235)
Q Consensus 207 p~------n~~aw~~r~~~l-~~l~~~ 226 (235)
|+ ++..+.+++.++ +..++.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk~d~ 519 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWKEDI 519 (606)
T ss_pred cccccccccchhhhhhhHhhhchhhhH
Confidence 99 999999999887 443433
No 29
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.77 E-value=2.1e-17 Score=159.12 Aligned_cols=178 Identities=10% Similarity=0.056 Sum_probs=155.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|++++...|++ ..+..++.++...|++. +|+..+.+++..+|++..++ +.+|.++...|++++
T Consensus 716 ~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~-----~A~~~~~~~l~~~~~~~~~~-~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTA-----EAVKTLEAWLKTHPNDAVLR-TALAELYLAQKDYDK 788 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHCcCHHH
Confidence 467788888888888888877 67777888888887764 68888999999999999888 578899999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..|++++..+|+++.++++.++++..+| + .+|+..+++++.+.|+++..|..+|.++...|++++|+..+++++++
T Consensus 789 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 789 AIKHYRTVVKKAPDNAVVLNNLAWLYLELK-D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988 4 77999999999999999999999999999999999999999999999
Q ss_pred CCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 206 DAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
+|.++.++.+++.++...|+..++.-.
T Consensus 867 ~~~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 867 APEAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999888988777543
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.75 E-value=6.3e-17 Score=155.85 Aligned_cols=178 Identities=14% Similarity=0.053 Sum_probs=154.2
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++++.+|+++.++..++.++...|+++ +|+..+.+++..+|.+..+| +.+|.++...|++++
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 211 (899)
T TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD-----EARALIDEVLTADPGNVDAL-LLKGDLLLSLGNIEL 211 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCChHHH-HHHHHHHHhcCCHHH
Confidence 478899999999999999999999999999999998774 68899999999999999998 578899999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..+++++.++|.+..++..++.++...| .+++|...++++++..|.+..+++.++.+....|++++|+..+++++..
T Consensus 212 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 290 (899)
T TIGR02917 212 ALAAYRKAIALRPNNPAVLLALATILIEAG-EFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKS 290 (899)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999998888 4888888888888888888888888888888888888888888888888
Q ss_pred CCCChHHhHHHHHHHhhcCCccccc
Q psy4772 206 DAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+|.+..++...|.++..+|+..++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~~~~A~ 315 (899)
T TIGR02917 291 APEYLPALLLAGASEYQLGNLEQAY 315 (899)
T ss_pred CCCchhHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888777777665543
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=1.5e-17 Score=143.03 Aligned_cols=186 Identities=10% Similarity=0.107 Sum_probs=116.6
Q ss_pred hhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH----------------------------HHHHHHHHHH
Q psy4772 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP----------------------------EVIQREIDYC 95 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e----------------------------~~~~~Al~~~ 95 (235)
..++++++|+..|++++..+|.++..+..++.+ ...+++.+ +.++++...+
T Consensus 55 ~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 55 WSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHH
Confidence 456788888888888888888888888777777 45554432 2567777888
Q ss_pred HHHHHhC--CCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC
Q psy4772 96 RDKIQIA--PKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENS 173 (235)
Q Consensus 96 ~kal~l~--p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P 173 (235)
.++.... |.++..| ..+|.++...|+.++|+.+++++|+++|++..++...++++...|+ .+++...++...+..|
T Consensus 134 ~~~~~~~~~~~~~~~~-~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~-~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 134 EKLEELPAAPDSARFW-LALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD-YDEAREALKRLLKAAP 211 (280)
T ss_dssp HHHHH-T---T-HHHH-HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH-HHHHHHHHHHHHHH-H
T ss_pred HHHHhccCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHCc
Confidence 8877655 6778888 6799999999999999999999999999999999999999999995 8999999999999999
Q ss_pred CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 174 KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 174 ~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
.++..|..+|.++..+|++++|+.++++++..+|+|+....+.+.++...|+..+|+-.
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999888754
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=8.1e-17 Score=162.49 Aligned_cols=180 Identities=11% Similarity=0.013 Sum_probs=146.7
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++++++|+++.+++.+|.++..+|+++ +|+..+++++.++|.++.++ +.+|..+...++.++
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~-----~A~~~l~~al~~~P~~~~~~-~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS-----QADALMRRLAQQKPNDPEQV-YAYGLYLSGSDRDRA 547 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCCCHHHH-HHHHHHHHhCCCHHH
Confidence 478999999999999999999999999999999999875 79999999999999999888 567666666666666
Q ss_pred HHHHHHHH----------------------------------------HHcCCCChHHHHHHHHHHHHhhHhHHHHHHHH
Q psy4772 126 ALALTADA----------------------------------------ITMNPANYTVWQYRREILKALNKDLHQELKYI 165 (235)
Q Consensus 126 Al~~~~~a----------------------------------------l~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~ 165 (235)
|+..++++ ++.+|.++.++..++.++.+.| ++++|+.+|
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g-~~~~A~~~y 626 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRG-DYAAARAAY 626 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcC-CHHHHHHHH
Confidence 66655432 3457788888888888888888 478888888
Q ss_pred HHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 166 GEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 166 ~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
+++++++|+|+.+++.++.++...|++++|+..+++++...|.+..++..++.++..+|+..+|.-.
T Consensus 627 ~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 693 (1157)
T PRK11447 627 QRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRT 693 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888887777777665533
No 33
>KOG1125|consensus
Probab=99.73 E-value=6.8e-17 Score=146.48 Aligned_cols=179 Identities=12% Similarity=0.122 Sum_probs=154.3
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|+..+|.-+|+.|++.+|++++||-.+|++....++- ..||..+.++++++|++-.+. ..++..+.+.|.-.+|
T Consensus 299 G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E-----~~ai~AL~rcl~LdP~NleaL-maLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENE-----QNAISALRRCLELDPTNLEAL-MALAVSYTNEGLQNQA 372 (579)
T ss_pred CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccch-----HHHHHHHHHHHhcCCccHHHH-HHHHHHHhhhhhHHHH
Confidence 6689999999999999999999999999999987653 379999999999999999999 6788888887777888
Q ss_pred HHHHHHHHHcCC-------------------------------------------CChHHHHHHHHHHHHhhHhHHHHHH
Q psy4772 127 LALTADAITMNP-------------------------------------------ANYTVWQYRREILKALNKDLHQELK 163 (235)
Q Consensus 127 l~~~~~al~l~P-------------------------------------------~~~~aw~~r~~~l~~l~~~~eeal~ 163 (235)
+.++.+-|+-.| .++.+...+|.+|.-.+ .|++|+.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~-efdraiD 451 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG-EFDRAVD 451 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch-HHHHHHH
Confidence 877777766443 34444555565554445 5999999
Q ss_pred HHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 164 YIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 164 ~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
||+.||..+|.|+..|+.+|..+-.-.+.++|+..|.+|+.+-|....+++|+|..++-+|-..+|...
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988887666543
No 34
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.72 E-value=8.9e-16 Score=128.40 Aligned_cols=179 Identities=12% Similarity=0.102 Sum_probs=135.5
Q ss_pred hhccCCCCCCCCCCchhHhhhhh-----hhhcHHHHHHHHHhHHhcCCCch---hHhhhHHHHHhhcCCCCHHHHHHHHH
Q psy4772 22 WKDLRPIPQDDGPTPVVAIAYSQ-----KCNLFSDELSYIEGLISHDVRNN---SAWTQRYFVINHTTQFTPEVIQREID 93 (235)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~y~~-----~~~~~~~Al~~~~~aL~~~P~~~---~a~~~~g~~l~~~~~~~e~~~~~Al~ 93 (235)
|..+.+.++.+.........|.. ..+++++|+..++++++.+|.++ .+|+.+|.++...|+++ +|+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~-----~A~~ 91 (235)
T TIGR03302 17 CSSKKKKEADPVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYA-----EAIA 91 (235)
T ss_pred ccCCcccccCCcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHH-----HHHH
Confidence 44555554444333333333332 23788999999999999999876 68899999999998874 7999
Q ss_pred HHHHHHHhCCCCCc---hhhHHHHHHHhcc--------cccHHHHHHHHHHHHcCCCChHHH-----------------H
Q psy4772 94 YCRDKIQIAPKNES---PWNYLRGAVVNAG--------EKSERALALTADAITMNPANYTVW-----------------Q 145 (235)
Q Consensus 94 ~~~kal~l~p~~~~---aw~~~~g~il~~~--------~~~~eAl~~~~~al~l~P~~~~aw-----------------~ 145 (235)
.++++++.+|+++. +| +.+|.++... |++++|+..+++++..+|++..++ .
T Consensus 92 ~~~~~l~~~p~~~~~~~a~-~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~ 170 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAY-YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKEL 170 (235)
T ss_pred HHHHHHHHCcCCCchHHHH-HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887 57 5788888765 788999999999999999987664 2
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCC---hHHhHHHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKN---YQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n---~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
..+.++...| ++.+|+..++++++..|++ +.+|+.+|.++..+|++++|.++++......|
T Consensus 171 ~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRG-AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcC-ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455666667 4788888888888887664 46888888888888888888887777766655
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.72 E-value=5.1e-16 Score=138.55 Aligned_cols=178 Identities=11% Similarity=-0.021 Sum_probs=128.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC----CchhhHHHHHHHhccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN----ESPWNYLRGAVVNAGE 121 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~----~~aw~~~~g~il~~~~ 121 (235)
.+++++|+..|.++++.+|+++.++..+|.++...|+++ +|+..+.+++...+.. ..++ ..+|.++...|
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-----~A~~~~~~~l~~~~~~~~~~~~~~-~~La~~~~~~g 121 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVD-----RAIRIHQNLLSRPDLTREQRLLAL-QELGQDYLKAG 121 (389)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHH-----HHHHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHCC
Confidence 477899999999999999999999999999999988875 5777777776643222 1345 35677777777
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH-----HhHHHHHHHHHcCCchHHH
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ-----VWRHRQIIVEWMGEPDEEL 196 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~-----aw~~r~~~l~~l~~~~~Al 196 (235)
++++|+..|+++++.+|.+..++..++.++...|+ +++|+..++++++.+|.+.. .+..++.++...|++++|+
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD-WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch-HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 77777777777777777777777777777777773 77777777777777666532 4455666666777777777
Q ss_pred HHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 197 ALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 197 ~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
..++++++.+|++..++..++.++...|+..+|.
T Consensus 201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 7777777777777777777777766666655543
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.71 E-value=6.1e-16 Score=126.11 Aligned_cols=159 Identities=11% Similarity=0.044 Sum_probs=147.5
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
.+.+++++|.++...|+++ +|+..+.+++..+|.+..+| ..+|.++...|++++|+..+++++++.|.+..++.
T Consensus 30 ~~~~~~~la~~~~~~~~~~-----~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLE-----VAKENLDKALEHDPDDYLAY-LALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred HHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCcccHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3688999999999999875 79999999999999999999 57999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhC--CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKEN--SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~--P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
+++.++...| ++++|+..++++++.. |....+|..+|.++...|++++|...+++++..+|.+..+|..++.++...
T Consensus 104 ~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 104 NYGTFLCQQG-KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHHHHHcc-cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 9999999999 5999999999999854 677889999999999999999999999999999999999999999999888
Q ss_pred CCcccccc
Q psy4772 224 DDDDRGVL 231 (235)
Q Consensus 224 ~~~~~~~~ 231 (235)
|+.+++..
T Consensus 183 ~~~~~A~~ 190 (234)
T TIGR02521 183 GQYKDARA 190 (234)
T ss_pred CCHHHHHH
Confidence 88876653
No 37
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.70 E-value=2.1e-15 Score=123.74 Aligned_cols=175 Identities=12% Similarity=0.048 Sum_probs=156.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
-|++..|..-+++||+.+|+++.+|.-++.++..+|+.+ .|-+.|.+|++++|++....| +-|+.+...|++++
T Consensus 48 ~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~-----~A~e~YrkAlsl~p~~GdVLN-NYG~FLC~qg~~~e 121 (250)
T COG3063 48 QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEND-----LADESYRKALSLAPNNGDVLN-NYGAFLCAQGRPEE 121 (250)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChh-----hHHHHHHHHHhcCCCccchhh-hhhHHHHhCCChHH
Confidence 378999999999999999999999999999999999875 688999999999999999996 79999999999999
Q ss_pred HHHHHHHHHHc--CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 126 ALALTADAITM--NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 126 Al~~~~~al~l--~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
|...|++|+.. .|..+..|-|.|.|-.+.|+ ++.|.+.++++|+.+|+++.+...+......-|++..|..++++..
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQ-FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 99999999984 68888899999999999995 8999999999999999999999999999999999999999999998
Q ss_pred HhCCCChHHhHHHHHHHhhcCCcc
Q psy4772 204 AQDAKNYHAWQHRQWVINLLDDDD 227 (235)
Q Consensus 204 ~ldp~n~~aw~~r~~~l~~l~~~~ 227 (235)
..-+-.+...---.-+-..+|+-+
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHH
Confidence 877655554333223335666554
No 38
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.69 E-value=1.7e-15 Score=135.25 Aligned_cols=177 Identities=11% Similarity=0.070 Sum_probs=136.7
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc-----hhhHHHHHHHhcc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES-----PWNYLRGAVVNAG 120 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~-----aw~~~~g~il~~~ 120 (235)
.|++++|+..|+++++.+|.+..++..++.++...|+++ +|++.+.++++.+|.+.. .+ ..+|.++...
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~-----~A~~~~~~~~~~~~~~~~~~~~~~~-~~la~~~~~~ 193 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQ-----KAIDVAERLEKLGGDSLRVEIAHFY-CELAQQALAR 193 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHH-----HHHHHHHHHHHhcCCcchHHHHHHH-HHHHHHHHhC
Confidence 478888999999998888888888888888888888764 678888888887776643 33 3566777778
Q ss_pred cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh-HHhHHHHHHHHHcCCchHHHHHH
Q psy4772 121 EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY-QVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 121 ~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~-~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
|++++|+..++++++.+|++..++..++.++...| ++++|+..++++++.+|.+. .++..++.++...|++++|+..+
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQG-DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888888888888888888888888 47888888888888877763 46677777888888888888888
Q ss_pred HHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 200 AAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 200 ~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
++++..+|+...+ ..++.++...|+..+|.
T Consensus 273 ~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 273 RRALEEYPGADLL-LALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHHHHhCCCchHH-HHHHHHHHHhCCHHHHH
Confidence 8888888876544 66777766666665543
No 39
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=1.2e-15 Score=127.63 Aligned_cols=165 Identities=9% Similarity=-0.054 Sum_probs=146.9
Q ss_pred hcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHcC
Q psy4772 61 SHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSERALALTADAITMN 137 (235)
Q Consensus 61 ~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l~ 137 (235)
.+++..++.++.+|..+...|+++ +|+..+.+++..+|.++ .+| +.+|.++...|++++|+..++++++.+
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~-----~A~~~~~~~~~~~p~~~~~~~a~-~~la~~~~~~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYT-----EAIKYFEALESRYPFSPYAEQAQ-LDLAYAYYKSGDYAEAIAAADRFIRLH 100 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCchhHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 456778999999999999999885 79999999999999987 577 689999999999999999999999999
Q ss_pred CCChH---HHHHHHHHHHHh--------hHhHHHHHHHHHHHHHhCCCChHHh-----------------HHHHHHHHHc
Q psy4772 138 PANYT---VWQYRREILKAL--------NKDLHQELKYIGEKIKENSKNYQVW-----------------RHRQIIVEWM 189 (235)
Q Consensus 138 P~~~~---aw~~r~~~l~~l--------~~~~eeal~~~~~al~~~P~n~~aw-----------------~~r~~~l~~l 189 (235)
|+++. +++.+|.++... + .+++|+..++++++.+|++..++ ..++.++...
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 179 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQT-AAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKR 179 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHH-HHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99887 799999999886 6 48999999999999999998664 3567778889
Q ss_pred CCchHHHHHHHHHHHhCCCC---hHHhHHHHHHHhhcCCccccccc
Q psy4772 190 GEPDEELALTAAILAQDAKN---YHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n---~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
|++.+|+..+++++...|++ +.+|+.+|.++..+|+..++...
T Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~ 225 (235)
T TIGR03302 180 GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDA 225 (235)
T ss_pred CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999997764 58999999999999998877653
No 40
>KOG0553|consensus
Probab=99.67 E-value=4.4e-16 Score=132.08 Aligned_cols=162 Identities=12% Similarity=0.121 Sum_probs=129.9
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHHHHHh--hcCC-----CCH-HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRYFVIN--HTTQ-----FTP-EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG 120 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~--~~~~-----~~e-~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~ 120 (235)
.+-++++++.++.+.++....-....++.. ..++ ... +...+|.. . -..|.=+.+.
T Consensus 31 leva~qc~e~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~AE~---------------L-K~eGN~~m~~ 94 (304)
T KOG0553|consen 31 LEVAIQCLEAAFGFRRDDVDRAEGTTLLDSFESAERHPVEILTPEEDKALAES---------------L-KNEGNKLMKN 94 (304)
T ss_pred HHHhHHHHHHHhCcchhhccccccccHHHHHHHhccCcccccChHhHHHHHHH---------------H-HHHHHHHHHh
Confidence 367788888888888777655444333322 2222 011 01111111 1 2357777788
Q ss_pred cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHH
Q psy4772 121 EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTA 200 (235)
Q Consensus 121 ~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~ 200 (235)
++|++|+..|++||+++|.++..+-+|+.+|.+||. ++.|++.|+++|.+||....+|--+|.++..+|++++|++.|+
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~-~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ayk 173 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE-YEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYK 173 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc-hHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 999999999999999999999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHhHHHHHHHhhcCCcc
Q psy4772 201 AILAQDAKNYHAWQHRQWVINLLDDDD 227 (235)
Q Consensus 201 ~ai~ldp~n~~aw~~r~~~l~~l~~~~ 227 (235)
+||++||.|.+.|.++.++-+.++...
T Consensus 174 KaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 174 KALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred hhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999987766543
No 41
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.67 E-value=1.6e-15 Score=124.66 Aligned_cols=126 Identities=13% Similarity=0.162 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHH-HHhhHh-HHHHHH
Q psy4772 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL-KALNKD-LHQELK 163 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l-~~l~~~-~eeal~ 163 (235)
...++++..+.++++.+|++..+| +.+|.++..+|++++|+.+|+++++++|+++.++...+.++ ...|+. .++|..
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w-~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQW-ALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 345688999999999999999999 68999999999999999999999999999999999999986 566631 489999
Q ss_pred HHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHH
Q psy4772 164 YIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 164 ~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~a 212 (235)
.++++++++|++..+++.+|..+...|++++|+.+++++++++|.+.+-
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999999999999999999999999999887653
No 42
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.67 E-value=2.7e-15 Score=114.77 Aligned_cols=128 Identities=12% Similarity=0.111 Sum_probs=110.0
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 93 ~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
+.+.+++.++|++..+. +.+|.++...|++++|+..+++++.++|.+..+|..+|.++..+|+ +++|+..++++++.+
T Consensus 4 ~~~~~~l~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQI-YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE-YEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHH-HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC
Confidence 45778888888888777 5788888888899999999999999999999999999999988884 899999999999999
Q ss_pred CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 173 SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 173 P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
|.++..|+++|.++...|++++|+..+++++.++|++...+..+..+...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM 131 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877766655543
No 43
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.65 E-value=3e-15 Score=123.04 Aligned_cols=124 Identities=11% Similarity=0.122 Sum_probs=115.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHH-hcccc--c
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVV-NAGEK--S 123 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il-~~~~~--~ 123 (235)
+..++++..++++|+.+|+++++|..+|.++...|+++ +|+..|.++++++|+++.++ ..+|.++ ...|+ +
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~-----~A~~a~~~Al~l~P~~~~~~-~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD-----NALLAYRQALQLRGENAELY-AALATVLYYQAGQHMT 126 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcCCCCc
Confidence 45689999999999999999999999999999999885 79999999999999999999 5888875 56676 6
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
++|+..++++++++|++..+++.+|.++..+| ++++|+.+++++++.+|.+..
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g-~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQA-DYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999999999999 599999999999999998753
No 44
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.7e-15 Score=127.00 Aligned_cols=191 Identities=24% Similarity=0.389 Sum_probs=157.9
Q ss_pred CCCCCCchhHhhhhhh----hhcH----------HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcC---CCCHHHHHHHH
Q psy4772 30 QDDGPTPVVAIAYSQK----CNLF----------SDELSYIEGLISHDVRNNSAWTQRYFVINHTT---QFTPEVIQREI 92 (235)
Q Consensus 30 ~~~~~~~~~~~~y~~~----~~~~----------~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~---~~~e~~~~~Al 92 (235)
|.+..++.+.+.|+.. +|.+ ..|++.....|..+|....+|..|-.++.... +..+.-+.+.+
T Consensus 15 q~~l~~~l~ri~~~e~y~~l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldnel 94 (328)
T COG5536 15 QFDLLSELQRILYTESYHPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNEL 94 (328)
T ss_pred chhhhhHHHHHHhhhccchHHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHH
Confidence 6677888888887754 2332 68899999999999999999999999888722 12234567889
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHhcc--cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHH------hhHhHHHHHHH
Q psy4772 93 DYCRDKIQIAPKNESPWNYLRGAVVNAG--EKSERALALTADAITMNPANYTVWQYRREILKA------LNKDLHQELKY 164 (235)
Q Consensus 93 ~~~~kal~l~p~~~~aw~~~~g~il~~~--~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~------l~~~~eeal~~ 164 (235)
..+..+++-+|+++..|++++ .++..- ..++..+..+++.|..||+|++.|++|.+++.. .. .+..++++
T Consensus 95 d~~~~~lk~~PK~YqiW~HR~-~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S-~~k~e~ey 172 (328)
T COG5536 95 DFLDEALKDNPKNYQIWHHRQ-WMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFS-DLKHELEY 172 (328)
T ss_pred HHHHHHHhcCCchhhhhHHHH-HHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccch-hHHHHHHh
Confidence 999999999999999998765 887765 568999999999999999999999999999933 33 36777999
Q ss_pred HHHHHHhCCCChHHhHHHH---HHHHHcCC------chHHHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 165 IGEKIKENSKNYQVWRHRQ---IIVEWMGE------PDEELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 165 ~~~al~~~P~n~~aw~~r~---~~l~~l~~------~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
-..+|.-|+.|++||.+|- ......|+ +++++++...++..+|.|.++|.|.+++...
T Consensus 173 tt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 173 TTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 9999999999999999993 33334444 5789999999999999999999999998743
No 45
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.64 E-value=1.8e-14 Score=137.65 Aligned_cols=161 Identities=8% Similarity=-0.059 Sum_probs=146.9
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALAL 129 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~ 129 (235)
.+++.-.....+--|.+++++.++|.+...+|+++ +|+..+..++++.|++..++ ..++.++.+.+++++|+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~-----ea~~~l~~~~~~~Pd~~~a~-~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSD-----EGLAVWRGIHQRFPDSSEAF-ILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcH-----HHHHHHHHHHhhCCCcHHHH-HHHHHHHHHhccHHHHHHH
Confidence 44444444555567889999999999999999986 69999999999999999999 6899999999999999999
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC
Q psy4772 130 TADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 130 ~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n 209 (235)
+++++..+|+++.+.+.++.++..+|+ +++|+.+|++++..+|++..+|..+|.++...|+.++|...|++|+.....-
T Consensus 143 ~~~~l~~~p~~~~~~~~~a~~l~~~g~-~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 143 IELYFSGGSSSAREILLEAKSWDEIGQ-SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcc-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 999999999999999999999999995 9999999999999999999999999999999999999999999999988877
Q ss_pred hHHhHHHH
Q psy4772 210 YHAWQHRQ 217 (235)
Q Consensus 210 ~~aw~~r~ 217 (235)
...+.++.
T Consensus 222 ~~~~~~~~ 229 (694)
T PRK15179 222 ARKLTRRL 229 (694)
T ss_pred hHHHHHHH
Confidence 77765543
No 46
>KOG0548|consensus
Probab=99.61 E-value=1.7e-14 Score=130.13 Aligned_cols=99 Identities=11% Similarity=0.151 Sum_probs=94.4
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|+|+.|+.+|..||.++|.|...+.+|..++..+|+|+ +|+++-.+.+.++|.=+.+| .++|..+.-+|++++|
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~-----~al~da~k~~~l~p~w~kgy-~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYE-----KALKDATKTRRLNPDWAKGY-SRKGAALFGLGDYEEA 89 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHH-----HHHHHHHHHHhcCCchhhHH-HHhHHHHHhcccHHHH
Confidence 78999999999999999999999999999999999885 79999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRREIL 151 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l 151 (235)
+..|.+.|+.+|++......+..+.
T Consensus 90 ~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999887765
No 47
>KOG0553|consensus
Probab=99.61 E-value=3e-15 Score=127.07 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=96.9
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
++|.+|+..|.+||+++|.|+..|.+|+.++.++|+|+ .|+++|.++|.+||....+| .++|.++..+|++++|
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~-----~AVkDce~Al~iDp~yskay-~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYE-----DAVKDCESALSIDPHYSKAY-GRLGLAYLALGKYEEA 168 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchH-----HHHHHHHHHHhcChHHHHHH-HHHHHHHHccCcHHHH
Confidence 57999999999999999999999999999999999986 69999999999999999999 5899999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhH
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNK 156 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~ 156 (235)
++.|+++|+++|.+...+.+++++-.++++
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999888864
No 48
>KOG1125|consensus
Probab=99.60 E-value=1.5e-14 Score=131.32 Aligned_cols=176 Identities=14% Similarity=0.164 Sum_probs=157.1
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC------------------------------------HHHHHHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT------------------------------------PEVIQREID 93 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~------------------------------------e~~~~~Al~ 93 (235)
..|+..+.++|+++|.|-+++-.+++.+...|.-. ...+..=.+
T Consensus 336 ~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~ 415 (579)
T KOG1125|consen 336 QNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQE 415 (579)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHH
Confidence 78999999999999999999999999998887310 012333346
Q ss_pred HHHHHHHhCC--CCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Q psy4772 94 YCRDKIQIAP--KNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKE 171 (235)
Q Consensus 94 ~~~kal~l~p--~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~ 171 (235)
.|..+-..+| .++... ..+|.++...|.+++|++||+.||..+|.++..|+-+|-++-+-.+ .++|+..|.+|+++
T Consensus 416 ~fLeaa~~~~~~~DpdvQ-~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~-s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 416 LFLEAARQLPTKIDPDVQ-SGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNR-SEEAISAYNRALQL 493 (579)
T ss_pred HHHHHHHhCCCCCChhHH-hhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcc-cHHHHHHHHHHHhc
Confidence 7888888888 788888 5899999999999999999999999999999999999999998885 89999999999999
Q ss_pred CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC----------ChHHhHHHHHHHhhcCCcc
Q psy4772 172 NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK----------NYHAWQHRQWVINLLDDDD 227 (235)
Q Consensus 172 ~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~----------n~~aw~~r~~~l~~l~~~~ 227 (235)
.|...-+|+++|..+..+|.|.+|...+=.||.+.++ +...|.+++.++..+++.+
T Consensus 494 qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 494 QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 9999999999999999999999999999999999887 2358999999999998886
No 49
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.60 E-value=1.8e-14 Score=110.15 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=114.3
Q ss_pred HHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHH
Q psy4772 54 SYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADA 133 (235)
Q Consensus 54 ~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~a 133 (235)
+.++++|+.+|++..+.+.+|.++...|++. +|+..+.+++.++|.++.+| +.+|.++...|++++|+..++++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~-----~A~~~~~~~~~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYD-----EALKLFQLLAAYDPYNSRYW-LGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHH-----HHHHHHHHHHHhCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999875 79999999999999999999 68999999999999999999999
Q ss_pred HHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 134 ITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 134 l~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
+.++|.++..++++|.++...| ++++|+..++++++.+|++...+-.+.
T Consensus 78 ~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~ 126 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLALG-EPESALKALDLAIEICGENPEYSELKE 126 (135)
T ss_pred HhcCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchHHHHHH
Confidence 9999999999999999999999 599999999999999999987665443
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=8e-15 Score=126.05 Aligned_cols=154 Identities=14% Similarity=0.176 Sum_probs=118.8
Q ss_pred hhhcHHHHHHHHHhHHhcC--CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 45 KCNLFSDELSYIEGLISHD--VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~--P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
..++++++...++.+.... |.++..|..+|.++...|+. ++|+.++.++|.++|+++.+++ .++.++...|+
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~-----~~A~~~~~~al~~~P~~~~~~~-~l~~~li~~~~ 195 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP-----DKALRDYRKALELDPDDPDARN-ALAWLLIDMGD 195 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHH-TT-HHHHH-HHHHHHCTTCH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHCCC
Confidence 4578899999999988766 78999999999999999976 4899999999999999999994 78899999999
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
.+++...++......|.++..|...|.++..+|+ .++|+.+++++++.+|+|+....+.+.++...|+.++|.....++
T Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 196 YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999888889999999999999999995 999999999999999999999999999999999999999999988
Q ss_pred HHh
Q psy4772 203 LAQ 205 (235)
Q Consensus 203 i~l 205 (235)
+..
T Consensus 275 ~~~ 277 (280)
T PF13429_consen 275 LRL 277 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 753
No 51
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.60 E-value=4.9e-14 Score=137.01 Aligned_cols=176 Identities=14% Similarity=0.014 Sum_probs=147.4
Q ss_pred hhcHHHHHHHHHhHHhcCC---CchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC----chhhHHHHHHHh
Q psy4772 46 CNLFSDELSYIEGLISHDV---RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE----SPWNYLRGAVVN 118 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P---~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~----~aw~~~~g~il~ 118 (235)
.+++++|+..|+++++..| .++..| .|.++..+|+++ +|+..|+++++.+|.++ ..+ ..++.++.
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e-----~A~~~l~~~l~~~p~~~~~~~~~~-~~L~~a~~ 321 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPE-----KAQSILTELFYHPETIADLSDEEL-ADLFYSLL 321 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcH-----HHHHHHHHHhhcCCCCCCCChHHH-HHHHHHHH
Confidence 3678999999999999864 444444 588888898875 79999999999988773 234 34566778
Q ss_pred cccccHHHHHHHHHHHHcCCCC---------------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 119 AGEKSERALALTADAITMNPAN---------------YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 119 ~~~~~~eAl~~~~~al~l~P~~---------------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
..|++++|+..+++++..+|.. ..++..++.++...| ++++|+..+++++...|.+..+|..++
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g-~~~eA~~~l~~al~~~P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN-DLPQAEMRARELAYNAPGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8899999999999999988732 356778888999888 489999999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 184 IIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 184 ~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
.++...|++++|++.+++++.++|++..+++.++.+...+|+.+.++
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999888888876655
No 52
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3e-15 Score=125.56 Aligned_cols=147 Identities=22% Similarity=0.445 Sum_probs=124.3
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHh-------cccccHHHHHHHHHHHHcCC
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVN-------AGEKSERALALTADAITMNP 138 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~-------~~~~~~eAl~~~~~al~l~P 138 (235)
.......+.......++|+. +|++.....+..+|.+++.|||+...+.. .....+..+..+..+++-+|
T Consensus 30 ~y~~l~gr~~a~r~kkeys~----~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~P 105 (328)
T COG5536 30 SYHPLMGRFRAKRRKKEYSV----RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNP 105 (328)
T ss_pred ccchHHHHHHHHHhhhhcCH----HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCC
Confidence 34455566667777777874 79999999999999999999987744433 22346889999999999999
Q ss_pred CChHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH------HHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 139 ANYTVWQYRREILKAL-NKDLHQELKYIGEKIKENSKNYQVWRHRQIIV------EWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 139 ~~~~aw~~r~~~l~~l-~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l------~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
++++.|+||.+++... ...|..++...++.|..||+|++.|++|.+++ .....+..++++...+|+.|+.|++
T Consensus 106 K~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~S 185 (328)
T COG5536 106 KNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNS 185 (328)
T ss_pred chhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChH
Confidence 9999999999999887 12589999999999999999999999999999 3334467889999999999999999
Q ss_pred HhHHH
Q psy4772 212 AWQHR 216 (235)
Q Consensus 212 aw~~r 216 (235)
||.+|
T Consensus 186 aW~~r 190 (328)
T COG5536 186 AWHHR 190 (328)
T ss_pred HHHHH
Confidence 99999
No 53
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.58 E-value=3.2e-14 Score=135.90 Aligned_cols=141 Identities=11% Similarity=-0.018 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKI 169 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al 169 (235)
+++.-.......-|.++.+. +++|.+....|++++|+..++.+++++|++..|+.+++.++.++++ +++|+..+++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~-~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l 147 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQ-VLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG-IEAGRAEIELYF 147 (694)
T ss_pred hhHHHHHHHHHhccccHHHH-HHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHh
Confidence 45555666677889999999 7899999999999999999999999999999999999999999995 999999999999
Q ss_pred HhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 170 KENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 170 ~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
..+|+|+.+.+.+|.++..+|++++|+.+|++++..+|+++.+|..+|.+++.+|+.++|.--
T Consensus 148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~ 210 (694)
T PRK15179 148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDV 210 (694)
T ss_pred hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887643
No 54
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.58 E-value=7.2e-14 Score=135.86 Aligned_cols=167 Identities=10% Similarity=0.024 Sum_probs=150.2
Q ss_pred hhcHHHHHHHHHhHHhcCCCc----hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---------------
Q psy4772 46 CNLFSDELSYIEGLISHDVRN----NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE--------------- 106 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~----~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~--------------- 106 (235)
.+++++|+..|+++++.+|.+ ...+..++.++...|+++ +|++.+.+++..+|...
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~-----eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP-----GALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH-----HHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 578999999999999999987 356777788888888764 79999999999988532
Q ss_pred chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 107 ~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.+. ..+|.++...|++++|+..+++++...|.+..++..++.++...|+ +++|+..++++++++|++..+++.++.+.
T Consensus 360 ~a~-~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~-~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 360 QGQ-SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW-PRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 244 4678899999999999999999999999999999999999999995 99999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 187 EWMGEPDEELALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 187 ~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
..+|++++|...++++++.+|+++.+....+-.
T Consensus 438 l~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999987775544
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.58 E-value=4.8e-14 Score=115.82 Aligned_cols=152 Identities=11% Similarity=0.032 Sum_probs=136.7
Q ss_pred hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHH
Q psy4772 68 SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYR 147 (235)
Q Consensus 68 ~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r 147 (235)
.+...+|.-+...|++. .|...++|||+.+|+.+.+| ..++.+++..|..+-|-+.|.+|+.++|++..+++|-
T Consensus 36 ~arlqLal~YL~~gd~~-----~A~~nlekAL~~DPs~~~a~-~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 36 KARLQLALGYLQQGDYA-----QAKKNLEKALEHDPSYYLAH-LVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCcccHHHH-HHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 46677788888888875 68899999999999999999 5899999999999999999999999999999999999
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHH--hCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 148 REILKALNKDLHQELKYIGEKIK--ENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 148 ~~~l~~l~~~~eeal~~~~~al~--~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
|+.+...|+ +++|...|++|+. -.|..+.+|-++|++-.+.|.++.|.+.+++++++||+++.+.--+......-|+
T Consensus 110 G~FLC~qg~-~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 110 GAFLCAQGR-PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred hHHHHhCCC-hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 999999994 9999999999998 5667778999999999999999999999999999999999987776666544444
Q ss_pred c
Q psy4772 226 D 226 (235)
Q Consensus 226 ~ 226 (235)
-
T Consensus 189 y 189 (250)
T COG3063 189 Y 189 (250)
T ss_pred c
Confidence 3
No 56
>KOG1173|consensus
Probab=99.57 E-value=2e-13 Score=123.90 Aligned_cols=173 Identities=15% Similarity=0.163 Sum_probs=150.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHH-----------------------------HHHHHHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-----------------------------VIQREIDYCR 96 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~-----------------------------~~~~Al~~~~ 96 (235)
.+.+.+|-.+|.++-.+||....+|..-|-.+...|+-+++ .++-|-.+|.
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 47789999999999999999999999999999888875531 3667889999
Q ss_pred HHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHH----cCCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy4772 97 DKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAIT----MNPAN---YTVWQYRREILKALNKDLHQELKYIGEKI 169 (235)
Q Consensus 97 kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~----l~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al 169 (235)
.|+.+.|.++-..+ -.|.+....+.+.+|+..|++++. ..++. ...|+++|.++.++++ +++|+.+++++|
T Consensus 405 ~A~ai~P~Dplv~~-Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~-~~eAI~~~q~aL 482 (611)
T KOG1173|consen 405 QALAIAPSDPLVLH-ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK-YEEAIDYYQKAL 482 (611)
T ss_pred HHHhcCCCcchhhh-hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh-HHHHHHHHHHHH
Confidence 99999999999994 789999999999999999999983 23333 3468899999999995 999999999999
Q ss_pred HhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 170 KENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 170 ~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
...|++..++...|+++..+|+++.|++.|.+|+.++|.|..+=.-++.++
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987766666666
No 57
>KOG0548|consensus
Probab=99.56 E-value=1.4e-13 Score=124.20 Aligned_cols=173 Identities=14% Similarity=0.149 Sum_probs=150.9
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH------------------------------------HHHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP------------------------------------EVIQR 90 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e------------------------------------~~~~~ 90 (235)
.+|..|++.|+.+|.++ .+..-+.+++-++..+|.+.+ ..++.
T Consensus 238 k~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred hhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 36899999999999999 999999999999999887642 23444
Q ss_pred HHHHHHHHHH--------------------------hCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHH
Q psy4772 91 EIDYCRDKIQ--------------------------IAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVW 144 (235)
Q Consensus 91 Al~~~~kal~--------------------------l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw 144 (235)
++..|.++|. ++|.-...- ..+|......|+|.+|+..|+++|.++|+++..+
T Consensus 317 ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~-r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lY 395 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEE-REKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLY 395 (539)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHH-HHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHH
Confidence 4455555443 566665544 3578888999999999999999999999999999
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 145 QYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 145 ~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
.+|+.|+.+|+. +..|+.+++.+|+++|.+..+|..+|.++..+.+|++|++.|..+++.||++..+--..+-+++.
T Consensus 396 sNRAac~~kL~~-~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 396 SNRAACYLKLGE-YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHhh-HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 999999999994 99999999999999999999999999999999999999999999999999999998888888754
No 58
>KOG0550|consensus
Probab=99.53 E-value=6e-14 Score=123.38 Aligned_cols=202 Identities=13% Similarity=0.146 Sum_probs=169.6
Q ss_pred cccccchhhhhccCCCCCCCCCCchh-Hhhhhh-----hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHH
Q psy4772 13 WVYYKNREEWKDLRPIPQDDGPTPVV-AIAYSQ-----KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE 86 (235)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~-----~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~ 86 (235)
++-++....+..++|+.+..-..|-+ ...+-. -++++.+|+...-..+++++.+.++++-||.+++..+..+
T Consensus 143 ~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~-- 220 (486)
T KOG0550|consen 143 KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNAD-- 220 (486)
T ss_pred hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchH--
Confidence 34445566778888888776655643 333322 2488999999999999999999999999999999887654
Q ss_pred HHHHHHHHHHHHHHhCCCCCc------------hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH----HHHHHHHH
Q psy4772 87 VIQREIDYCRDKIQIAPKNES------------PWNYLRGAVVNAGEKSERALALTADAITMNPANYT----VWQYRREI 150 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~~~~------------aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~----aw~~r~~~ 150 (235)
.|+..|+++|.++|.+.. .| -.+|.-..+.|++..|-++|..+|.++|++.. .+.+|+.+
T Consensus 221 ---ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~-k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 221 ---KAINHFQQALRLDPDHQKSKSASMMPKKLEVK-KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred ---HHHHHHhhhhccChhhhhHHhHhhhHHHHHHH-HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 799999999999999985 45 35777788899999999999999999999765 58899999
Q ss_pred HHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC--ChHHhHHHHHHHh
Q psy4772 151 LKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK--NYHAWQHRQWVIN 221 (235)
Q Consensus 151 l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~--n~~aw~~r~~~l~ 221 (235)
..+||+ ..+|+..|++++.+||....++..|+.++..++++++|.+.|++++.+..+ .-..|......|+
T Consensus 297 ~~rLgr-l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 297 NIRLGR-LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred hcccCC-chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 999995 999999999999999999999999999999999999999999999987655 6666655555553
No 59
>KOG3060|consensus
Probab=99.53 E-value=7.7e-13 Score=110.07 Aligned_cols=172 Identities=13% Similarity=0.063 Sum_probs=157.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.+....|..+++..-...|+..-+--..|..+...|++. +|++.|+..|+-||.+..++ -++-.++..+|+.-+
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~-----~A~e~y~~lL~ddpt~~v~~-KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK-----EAIEYYESLLEDDPTDTVIR-KRKLAILKAQGKNLE 138 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh-----hHHHHHHHHhccCcchhHHH-HHHHHHHHHcCCcHH
Confidence 467799999999999999999999999999999999875 79999999999999999999 577778888999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC---chHHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE---PDEELALTAAI 202 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~---~~~Al~~~~~a 202 (235)
|++....-++..|.+..||+..+.+|..++ +|+.|.-|+++++-+.|-|+-..-.++-++..+|- ++-+.++|.++
T Consensus 139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~-~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 139 AIKELNEYLDKFMNDQEAWHELAEIYLSEG-DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 59999999999999999999999999988887774 67899999999
Q ss_pred HHhCCCChHHhHHHHHHHhhcC
Q psy4772 203 LAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 203 i~ldp~n~~aw~~r~~~l~~l~ 224 (235)
+++.|.+..+|+..-.+.+.+-
T Consensus 218 lkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 218 LKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHhChHhHHHHHHHHHHHHHHH
Confidence 9999999999998766654443
No 60
>KOG0550|consensus
Probab=99.52 E-value=4.4e-14 Score=124.17 Aligned_cols=182 Identities=14% Similarity=0.179 Sum_probs=139.7
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH-----------------------------------------
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP----------------------------------------- 85 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e----------------------------------------- 85 (235)
..|.+|+..|..||...|+++..|.+|+.+++..|+|++
T Consensus 63 k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~ 142 (486)
T KOG0550|consen 63 KTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKS 142 (486)
T ss_pred hhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhh
Confidence 468999999999999999999999999999999998753
Q ss_pred ----------------------------------------HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 86 ----------------------------------------EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 86 ----------------------------------------~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.++.+|+.....++++++.+..+. +.+|.++......+.
T Consensus 143 ~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al-~vrg~~~yy~~~~~k 221 (486)
T KOG0550|consen 143 KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEAL-YVRGLCLYYNDNADK 221 (486)
T ss_pred hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHH-HhcccccccccchHH
Confidence 012334444555666677777776 566777777777777
Q ss_pred HHHHHHHHHHcCCCChHH------------HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh----HHhHHHHHHHHHc
Q psy4772 126 ALALTADAITMNPANYTV------------WQYRREILKALNKDLHQELKYIGEKIKENSKNY----QVWRHRQIIVEWM 189 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~a------------w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~----~aw~~r~~~l~~l 189 (235)
++..|+++|+++|++..+ |..+|.-..+-| .+..|-++|..+|.++|.|. ..+.+|+.+..++
T Consensus 222 a~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G-~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL 300 (486)
T KOG0550|consen 222 AINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG-NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL 300 (486)
T ss_pred HHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc-chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc
Confidence 777777777777776653 444455555555 37888888999999998764 4688888899999
Q ss_pred CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 190 GEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
|+..+|+..++.|+.+||....++.-|+.+...|++--+++
T Consensus 301 grl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 301 GRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred CCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988998888777655444
No 61
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.52 E-value=1.2e-12 Score=127.29 Aligned_cols=172 Identities=10% Similarity=0.004 Sum_probs=148.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHH--HHHHhccccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLR--GAVVNAGEKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~--g~il~~~~~~ 123 (235)
-|++..|+..|+++++.+|.++.+......++...|+++ +|+..+++++ +|.+..... .+ |.++...|++
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~-----~A~~~~eka~--~p~n~~~~~-llalA~ly~~~gdy 118 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQ-----EVIDVYERYQ--SSMNISSRG-LASAARAYRNEKRW 118 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcH-----HHHHHHHHhc--cCCCCCHHH-HHHHHHHHHHcCCH
Confidence 488999999999999999999755447777777888875 7999999999 666666552 45 6688899999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
++|++.|+++++++|+++.++..++.++..+++ .++|+..+++++..+|.+... ..++.++...++..+|++.+++++
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q-~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGR-GGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC-HHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999999999999998899999985 899999999999999997766 666777777888888999999999
Q ss_pred HhCCCChHHhHHHHHHHhhcCCcc
Q psy4772 204 AQDAKNYHAWQHRQWVINLLDDDD 227 (235)
Q Consensus 204 ~ldp~n~~aw~~r~~~l~~l~~~~ 227 (235)
+++|.+..++..+-.++...|--+
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcH
Confidence 999999999998888887776553
No 62
>KOG2076|consensus
Probab=99.51 E-value=7.7e-13 Score=125.28 Aligned_cols=177 Identities=15% Similarity=0.205 Sum_probs=145.5
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|++++|+..+..+|+++|.++.+|+.+|.|+..+|+. ++++.+.-.|--++|+++.-| ...+.....+|.+.+|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~-----eK~l~~~llAAHL~p~d~e~W-~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDI-----EKALNFWLLAAHLNPKDYELW-KRLADLSEQLGNINQA 226 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccH-----HHHHHHHHHHHhcCCCChHHH-HHHHHHHHhcccHHHH
Confidence 7899999999999999999999999999999999964 466666666667777777777 4666666666777777
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhH--------------------------------------------------
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNK-------------------------------------------------- 156 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~-------------------------------------------------- 156 (235)
.-||.+||..+|.+......|..++.++|.
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777777777776666666666666651
Q ss_pred --------------------------------------------------------------------------------
Q psy4772 157 -------------------------------------------------------------------------------- 156 (235)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (235)
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence
Q ss_pred ------------------------------------------hHHHHHHHHHHHHHhCCC-ChHHhHHHHHHHHHcCCch
Q psy4772 157 ------------------------------------------DLHQELKYIGEKIKENSK-NYQVWRHRQIIVEWMGEPD 193 (235)
Q Consensus 157 ------------------------------------------~~eeal~~~~~al~~~P~-n~~aw~~r~~~l~~l~~~~ 193 (235)
.+.+|+.++..++...+. |.-.|+.+|.++..+|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 367788888888887764 4569999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 194 EELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 194 ~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
+|+++|++++.++|.|..+-..++.++..+|+..++
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKA 502 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHH
Confidence 999999999999999999999999999999987654
No 63
>KOG1173|consensus
Probab=99.51 E-value=7.8e-13 Score=120.12 Aligned_cols=178 Identities=11% Similarity=0.109 Sum_probs=144.8
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|+..+-...--+.....|+.+..|+..|.-+...|+++ +|-.+|.|+..+||.+..+| ...|..+...|..++|
T Consensus 292 ~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~s-----eARry~SKat~lD~~fgpaW-l~fghsfa~e~EhdQA 365 (611)
T KOG1173|consen 292 GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYS-----EARRYFSKATTLDPTFGPAW-LAFGHSFAGEGEHDQA 365 (611)
T ss_pred cccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcH-----HHHHHHHHHhhcCccccHHH-HHHhHHhhhcchHHHH
Confidence 44445555555667778888888888888888888876 68899999999999999999 5899999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh------------------------------
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY------------------------------ 176 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~------------------------------ 176 (235)
+.+|.+|-++-|++.....+.|.=+...+ .++-|-.++..|+.+.|.++
T Consensus 366 maaY~tAarl~~G~hlP~LYlgmey~~t~-n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 366 MAAYFTAARLMPGCHLPSLYLGMEYMRTN-NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHhc-cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 99999998888888888888887777665 24444444444444444333
Q ss_pred -----------HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 177 -----------QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 177 -----------~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
..|+++|-++.+++++++|+.++++||.+.|++.+++...|++..++|+.++|+-
T Consensus 445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence 2488999999999999999999999999999999999999999999999887764
No 64
>KOG0624|consensus
Probab=99.50 E-value=7.8e-13 Score=114.32 Aligned_cols=166 Identities=16% Similarity=0.131 Sum_probs=126.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
+.+.+|+..|-.|+..+|+++.+++.||.++..+|+-. -|+.++.++|++.|++..|- ..||.++.++|.+++|
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk-----~al~Dl~rVlelKpDF~~AR-iQRg~vllK~Gele~A 125 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSK-----AALQDLSRVLELKPDFMAAR-IQRGVVLLKQGELEQA 125 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCc-----cchhhHHHHHhcCccHHHHH-HHhchhhhhcccHHHH
Confidence 56788999999999999999999999999988888754 47777888888888877777 5777777777777777
Q ss_pred HHHHHHHHHcCCCCh-------------------------------------------------HHHHHHHHHHHHhhHh
Q psy4772 127 LALTADAITMNPANY-------------------------------------------------TVWQYRREILKALNKD 157 (235)
Q Consensus 127 l~~~~~al~l~P~~~-------------------------------------------------~aw~~r~~~l~~l~~~ 157 (235)
...|+.+|..+|++- ..+..|+.||..-| .
T Consensus 126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~-e 204 (504)
T KOG0624|consen 126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG-E 204 (504)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC-c
Confidence 777777777777433 22223444444444 2
Q ss_pred HHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 158 ~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
...|+..++.+-++..+|..+.+..+.++...|+.+.++..++.-+.+||++-.++-+...+
T Consensus 205 ~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 56677777888888888888888888888888888888888888888888888887765544
No 65
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.49 E-value=5.9e-13 Score=118.69 Aligned_cols=111 Identities=10% Similarity=0.035 Sum_probs=92.4
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
..|......|++++|+.+|+++|+++|.++.+|.+|+.++..+| ++++|+.+++++++++|.+..+|+.+|.++..+|+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g-~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLG-NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 45677777788888888888888888888888888888888888 48888888888888888888888888888888888
Q ss_pred chHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 192 PDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 192 ~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
+++|+..+++++.++|++..+...++.+...+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 88888888888888888888888887776444
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.47 E-value=2.1e-12 Score=114.02 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=129.7
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..+++++..+|++..++.. +..+...|.+.. ....+...+......+|....++ ..+|.++...|++++
T Consensus 56 ~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~-~~~a~~~~~~G~~~~ 132 (355)
T cd05804 56 AGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSG-MRDHVARVLPLWAPENPDYWYLL-GMLAFGLEEAGQYDR 132 (355)
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhccccc-CchhHHHHHhccCcCCCCcHHHH-HHHHHHHHHcCCHHH
Confidence 478999999999999999999999887 777777665532 12233343443334445554555 356789999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh----HHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY----QVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~----~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
|+..++++++++|++..+++.++.++...|+ +++|+.++++++...|.++ +.|.+++.++...|++++|+..+++
T Consensus 133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~-~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELNPDDAWAVHAVAHVLEMQGR-FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999994 9999999999999987543 4677899999999999999999999
Q ss_pred HHHhCC
Q psy4772 202 ILAQDA 207 (235)
Q Consensus 202 ai~ldp 207 (235)
++...|
T Consensus 212 ~~~~~~ 217 (355)
T cd05804 212 HIAPSA 217 (355)
T ss_pred Hhcccc
Confidence 988777
No 67
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.45 E-value=2.7e-12 Score=113.25 Aligned_cols=180 Identities=8% Similarity=-0.018 Sum_probs=148.7
Q ss_pred hhcHHHHHHHHHhHHhcCCCch---hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc--
Q psy4772 46 CNLFSDELSYIEGLISHDVRNN---SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG-- 120 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~---~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~-- 120 (235)
.++.+++...+.++++..|.+. +..+.++.++...|+++ +|+..+.+++..+|++..++. . +..+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~-----~A~~~~~~~l~~~P~~~~a~~-~-~~~~~~~~~ 91 (355)
T cd05804 19 GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLP-----KALALLEQLLDDYPRDLLALK-L-HLGAFGLGD 91 (355)
T ss_pred cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHCCCcHHHHH-H-hHHHHHhcc
Confidence 4677888999999999988774 56888899999998874 799999999999999998884 3 4444443
Q ss_pred --cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHH
Q psy4772 121 --EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELAL 198 (235)
Q Consensus 121 --~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~ 198 (235)
+....+..........+|....++..++.++...| ++++|+..++++++++|++..++..++.++...|++++|+.+
T Consensus 92 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G-~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~ 170 (355)
T cd05804 92 FSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAG-QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAF 170 (355)
T ss_pred cccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 44455555555555678888888889999999999 499999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCh----HHhHHHHHHHhhcCCcccccccc
Q psy4772 199 TAAILAQDAKNY----HAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 199 ~~~ai~ldp~n~----~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
+++++...|.+. +.|.+++.++...|+.+++.-.|
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999987543 45678888888899887775443
No 68
>KOG2002|consensus
Probab=99.43 E-value=1e-11 Score=118.62 Aligned_cols=184 Identities=14% Similarity=0.123 Sum_probs=138.0
Q ss_pred CCchhHhhhh-hhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhh--
Q psy4772 34 PTPVVAIAYS-QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWN-- 110 (235)
Q Consensus 34 ~~~~~~~~y~-~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~-- 110 (235)
..+...++|. -.+++.+.|+..|.+||+++|.++.++..+|.+.....+ ...+..++..+.++...+|.+|.+.+
T Consensus 199 aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d--~~s~~~~~~ll~~ay~~n~~nP~~l~~L 276 (1018)
T KOG2002|consen 199 ADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFND--SDSYKKGVQLLQRAYKENNENPVALNHL 276 (1018)
T ss_pred CCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhhcCCCcHHHHHH
Confidence 3345566666 346788999999999999999999999999988877643 34577899999999999999995552
Q ss_pred ----------------------------------HHHHHHHhcccccHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHhh
Q psy4772 111 ----------------------------------YLRGAVVNAGEKSERALALTADAITMNPAN-YTVWQYRREILKALN 155 (235)
Q Consensus 111 ----------------------------------~~~g~il~~~~~~~eAl~~~~~al~l~P~~-~~aw~~r~~~l~~l~ 155 (235)
|.+|.+++.+|++++|..+|.+++..+|++ .-+++..|.++...|
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~ 356 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRG 356 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhc
Confidence 345555666677777777777777777777 666677777777777
Q ss_pred HhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC----CchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 156 KDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG----EPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 156 ~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~----~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
.++.+..|++++++..|+++.+..-+|.++...+ ..++|.....++++..|.+..+|..++.++
T Consensus 357 -dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 357 -DLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred -hHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4777777777777777777777777777776654 356777777777777777777777777766
No 69
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.42 E-value=1.5e-11 Score=102.78 Aligned_cols=173 Identities=10% Similarity=0.117 Sum_probs=159.0
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALAL 129 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~ 129 (235)
..+...+=+....+|++.++ .+....+...|+-+ .++....+++--+|.+.... ...|..+...|++.+|+..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~-----~~l~~~~~~~~~~~~d~~ll-~~~gk~~~~~g~~~~A~~~ 122 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDAD-----SSLAVLQKSAIAYPKDRELL-AAQGKNQIRNGNFGEAVSV 122 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhccccc-----chHHHHhhhhccCcccHHHH-HHHHHHHHHhcchHHHHHH
Confidence 55777777888899999999 99999999998755 46677788888899998887 4688999999999999999
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC
Q psy4772 130 TADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 130 ~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n 209 (235)
+.++.+++|.+..+|+-+|.+|.++|+ +++|...|.+++++.|.++.+.+++|..+.-.|+++.|..++.++...-+.+
T Consensus 123 ~rkA~~l~p~d~~~~~~lgaaldq~Gr-~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 123 LRKAARLAPTDWEAWNLLGAALDQLGR-FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred HHHHhccCCCChhhhhHHHHHHHHccC-hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHhhcCCccccc
Q psy4772 210 YHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 210 ~~aw~~r~~~l~~l~~~~~~~ 230 (235)
...-.++..++..+|+...++
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHH
Confidence 999999999999999987664
No 70
>KOG2002|consensus
Probab=99.42 E-value=4.9e-12 Score=120.68 Aligned_cols=175 Identities=11% Similarity=0.035 Sum_probs=155.9
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC------------------------------------------
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT------------------------------------------ 84 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~------------------------------------------ 84 (235)
+...+|...+..++..+-+++.+|...|.++....+..
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 45688888999999999999999999996655443211
Q ss_pred -HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHH
Q psy4772 85 -PEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELK 163 (235)
Q Consensus 85 -e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~ 163 (235)
....++|++.|.++|+.+|.|-.|-| ..|.|+...|++.+|+..|.++.+--.+++++|.+.|.|+..+|+ |-.|++
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAAN-GIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q-y~~AIq 701 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAAN-GIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ-YRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhcc-chhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH-HHHHHH
Confidence 13578999999999999999999995 899999999999999999999999888999999999999999995 999999
Q ss_pred HHHHHHHhCC--CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 164 YIGEKIKENS--KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 164 ~~~~al~~~P--~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
.|+.+++.+- ++++....++.++...|.+.+|.+...+|+.+.|.|++.-+|++.++..+
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 9999998654 67889999999999999999999999999999999999999999998544
No 71
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.41 E-value=2.1e-12 Score=101.28 Aligned_cols=94 Identities=10% Similarity=-0.048 Sum_probs=57.1
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
|..|..+...|++++|...|+.++.++|.++..|+++|.|+..+|+ +++|+.+|.+++.++|+++.+.+|.|.++..+|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~-~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKH-WGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 4555555566666666666666666666666666666666666653 666666666666666666666666666666666
Q ss_pred CchHHHHHHHHHHHh
Q psy4772 191 EPDEELALTAAILAQ 205 (235)
Q Consensus 191 ~~~~Al~~~~~ai~l 205 (235)
+.+.|.++|+.||..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666666553
No 72
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.41 E-value=3e-12 Score=114.15 Aligned_cols=102 Identities=15% Similarity=0.183 Sum_probs=55.1
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
++|++|+..|++||+++|.++.+|+++|.++..+|+++ +|+..+.+++.++|.++.+| +++|.++..+|++++|
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~-----eAl~~~~~Al~l~P~~~~a~-~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFT-----EAVADANKAIELDPSLAKAY-LRKGTACMKLEEYQTA 89 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCcCCHHHH-HHHHHHHHHhCCHHHH
Confidence 34555555555555555555555555555555555443 45555555555555555555 3555555555555555
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHh
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKAL 154 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l 154 (235)
+..++++++++|++..+...++.|...+
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5555555555555555555544444444
No 73
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.39 E-value=4.8e-12 Score=99.20 Aligned_cols=111 Identities=10% Similarity=0.040 Sum_probs=104.9
Q ss_pred HHHhHHhcC-CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHH
Q psy4772 55 YIEGLISHD-VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADA 133 (235)
Q Consensus 55 ~~~~aL~~~-P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~a 133 (235)
.+..+..+. |+.-+..+..|..++..|+++ +|...|..+..++|.++..| +++|.|++.+|++++|+.+|.++
T Consensus 22 sl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~-----~A~~~f~~L~~~Dp~~~~y~-~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 22 SLRMLLDDDVTQPLNTLYRYAMQLMEVKEFA-----GAARLFQLLTIYDAWSFDYW-FRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred cHHHHHCCChHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCcccHHHH-HHHHHHHHHHhhHHHHHHHHHHH
Confidence 456778888 999999999999999999985 79999999999999999999 89999999999999999999999
Q ss_pred HHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 134 ITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 134 l~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
+.++|+++.+.+|.|.|+..+|+ .+.|.++|+.+|..-
T Consensus 96 ~~L~~ddp~~~~~ag~c~L~lG~-~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 96 AQIKIDAPQAPWAAAECYLACDN-VCYAIKALKAVVRIC 133 (157)
T ss_pred HhcCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHHh
Confidence 99999999999999999999994 899999999999865
No 74
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=1.4e-11 Score=111.66 Aligned_cols=182 Identities=10% Similarity=-0.034 Sum_probs=151.2
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHH----------------H------------H-----HHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE----------------V------------I-----QREI 92 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~----------------~------------~-----~~Al 92 (235)
.++++.|++.++.+++..|+++.++...+.++...|++++. . + +++.
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 47899999999999999999999999999999999986520 0 1 1122
Q ss_pred HHHHHHHHhCC----CCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHH--HHHHHHHHHhhHhHHHHHHHHH
Q psy4772 93 DYCRDKIQIAP----KNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVW--QYRREILKALNKDLHQELKYIG 166 (235)
Q Consensus 93 ~~~~kal~l~p----~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw--~~r~~~l~~l~~~~eeal~~~~ 166 (235)
+.+.++....| +++..+ ...+..+...|++++|++..+++++..|++.... ..+.......+ +...++..++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~-~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~-~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALK-IALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPE-DNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHH-HHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCC-ChHHHHHHHH
Confidence 36667777788 478888 5788999999999999999999999999998653 33333333344 4788999999
Q ss_pred HHHHhCCCCh--HHhHHHHHHHHHcCCchHHHHHHH--HHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 167 EKIKENSKNY--QVWRHRQIIVEWMGEPDEELALTA--AILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 167 ~al~~~P~n~--~aw~~r~~~l~~l~~~~~Al~~~~--~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
++++.+|+++ .....+|+++.+.|++++|.++++ .++..+|++..+. +++-++..+|+.+++.
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEAA 390 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHHH
Confidence 9999999999 889999999999999999999999 6888999888754 9999999999987764
No 75
>KOG0624|consensus
Probab=99.38 E-value=4.3e-12 Score=109.78 Aligned_cols=158 Identities=14% Similarity=0.092 Sum_probs=141.2
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
.+|..++-++.+|.-+...|+++ .|+..|.+|+..||+++.+. |+||.++..+|+..-|+..++++|++.|++.
T Consensus 33 ~~~advekhlElGk~lla~~Q~s-----DALt~yHaAve~dp~~Y~ai-frRaT~yLAmGksk~al~Dl~rVlelKpDF~ 106 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLS-----DALTHYHAAVEGDPNNYQAI-FRRATVYLAMGKSKAALQDLSRVLELKPDFM 106 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHcCCchhHHHH-HHHHHHHhhhcCCccchhhHHHHHhcCccHH
Confidence 46788889999999999999987 69999999999999999999 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH-------------HhHHHHHHH--HHcCCchHHHHHHHHHHHhC
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ-------------VWRHRQIIV--EWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~-------------aw~~r~~~l--~~l~~~~~Al~~~~~ai~ld 206 (235)
.|-..||.++.+.|+ +++|...|+.+|+-+|++-. -|..+..+. ...|+...++++++..|++-
T Consensus 107 ~ARiQRg~vllK~Ge-le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~ 185 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGE-LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ 185 (504)
T ss_pred HHHHHhchhhhhccc-HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC
Confidence 999999999999995 99999999999999996543 355555554 34578999999999999999
Q ss_pred CCChHHhHHHHHHHhhcCCc
Q psy4772 207 AKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 207 p~n~~aw~~r~~~l~~l~~~ 226 (235)
|=+++.+.+|+.|+-.-|+-
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~ 205 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEP 205 (504)
T ss_pred cchhHHHHHHHHHHHhcCcH
Confidence 99999999999998655543
No 76
>KOG4162|consensus
Probab=99.36 E-value=5.4e-11 Score=111.45 Aligned_cols=193 Identities=15% Similarity=0.214 Sum_probs=150.9
Q ss_pred hhHhhhhhh-hhcHHHHHHHHHhHHhc-CCCchhHhhhHHHHHhhcCCCCHH----------------------------
Q psy4772 37 VVAIAYSQK-CNLFSDELSYIEGLISH-DVRNNSAWTQRYFVINHTTQFTPE---------------------------- 86 (235)
Q Consensus 37 ~~~~~y~~~-~~~~~~Al~~~~~aL~~-~P~~~~a~~~~g~~l~~~~~~~e~---------------------------- 86 (235)
++..++-.+ .++.+.|+....++|++ ..+.+.+|+.++.|+...+++.++
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 444444433 36789999999999999 556789999999999999987631
Q ss_pred -HHHHHHHHHHHHHHhCC--------------------------------------------------------------
Q psy4772 87 -VIQREIDYCRDKIQIAP-------------------------------------------------------------- 103 (235)
Q Consensus 87 -~~~~Al~~~~kal~l~p-------------------------------------------------------------- 103 (235)
+.++|+..|...|.+-.
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~ 640 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP 640 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC
Confidence 12223322222222111
Q ss_pred CCC-------chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 104 KNE-------SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 104 ~~~-------~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
... ..| ...+......+..++|.-|..++-.++|-++..|+-+|.++...|+ +++|...|..++.+||+++
T Consensus 641 ~~~~~~~~~~~lw-llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~-~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 641 GPDSLWYLLQKLW-LLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ-LEEAKEAFLVALALDPDHV 718 (799)
T ss_pred CCCchHHHHHHHH-HHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh-hHHHHHHHHHHHhcCCCCc
Confidence 011 123 2455556666778899999999999999999999999999999995 9999999999999999999
Q ss_pred HHhHHHHHHHHHcCCchHHHH--HHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 177 QVWRHRQIIVEWMGEPDEELA--LTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~--~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
.+...+|.++...|+..-|-. +..-|+++||.|..+|+++|.+++..|+...|..
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 999999999999998665555 9999999999999999999999999999866543
No 77
>KOG2076|consensus
Probab=99.36 E-value=1.7e-11 Score=116.37 Aligned_cols=131 Identities=17% Similarity=0.287 Sum_probs=122.3
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHH
Q psy4772 70 WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRRE 149 (235)
Q Consensus 70 ~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~ 149 (235)
+...+..++-.|++ ++|+..+..+|+.+|.++.+| +.+|.|+..+|+.++++.+.-.|.-++|++..-|...+.
T Consensus 142 ll~eAN~lfarg~~-----eeA~~i~~EvIkqdp~~~~ay-~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 142 LLGEANNLFARGDL-----EEAEEILMEVIKQDPRNPIAY-YTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHhCCH-----HHHHHHHHHHHHhCccchhhH-HHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34444555556765 589999999999999999999 799999999999999999999999999999999999999
Q ss_pred HHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 150 ILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 150 ~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
...++| .+.+|.-||.+||+.+|.|......|+.++.+.|+...|++.+.+++.++|
T Consensus 216 ls~~~~-~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 216 LSEQLG-NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHhcc-cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 999999 699999999999999999999999999999999999999999999999999
No 78
>KOG1127|consensus
Probab=99.34 E-value=8e-12 Score=119.44 Aligned_cols=173 Identities=11% Similarity=0.055 Sum_probs=156.1
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
.+-..|+..|-++|+++|..+-+|..+|.++..-- +..+|-.+|.||+.+||.++++|- .....+.+...+++|
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~-----Dm~RA~kCf~KAFeLDatdaeaaa-a~adtyae~~~we~a 545 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSD-----DMKRAKKCFDKAFELDATDAEAAA-ASADTYAEESTWEEA 545 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCchhhhhHH-HHHHHhhccccHHHH
Confidence 45689999999999999999999999999998753 346899999999999999999995 678999999999999
Q ss_pred HHHHHHHHHcCCCChH--HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 127 LALTADAITMNPANYT--VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 127 l~~~~~al~l~P~~~~--aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
....-.+-+..|.... .|.+||-.+.+-+ .+-.++..++.+++.+|+++.+|..+|-++...|++.-|+..|++|..
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~-n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAH-NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCcc-chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 9998888888887654 6778888888888 489999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHhHHHHHHHhhcCCc
Q psy4772 205 QDAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 205 ldp~n~~aw~~r~~~l~~l~~~ 226 (235)
++|.+-.+-+..+.....+|+-
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhH
Confidence 9999999988888887777764
No 79
>KOG1174|consensus
Probab=99.32 E-value=1.6e-10 Score=102.22 Aligned_cols=177 Identities=15% Similarity=0.161 Sum_probs=140.2
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC-----------------------------HHHHHHHHHHHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT-----------------------------PEVIQREIDYCRD 97 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~-----------------------------e~~~~~Al~~~~k 97 (235)
|++++|+--|++++.+||.+..+.-.-|.++-..|+++ +.++..|+.+-.|
T Consensus 246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 67899999999999999999988888888888877654 2578899999999
Q ss_pred HHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH---------------------
Q psy4772 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK--------------------- 156 (235)
Q Consensus 98 al~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~--------------------- 156 (235)
+|+.+|++..++ ..+|.++..+|+.++|+-.|..|..+.|..-..|..+-.+|...++
T Consensus 326 ~I~~~~r~~~al-ilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~ 404 (564)
T KOG1174|consen 326 CIDSEPRNHEAL-ILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARS 404 (564)
T ss_pred HhccCcccchHH-HhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhh
Confidence 999999999999 6899999999999999999999999999888887776666666552
Q ss_pred --------------hHHHHHHHHHHHHHhCCCChHH---------------------------------hHHHHHHHHHc
Q psy4772 157 --------------DLHQELKYIGEKIKENSKNYQV---------------------------------WRHRQIIVEWM 189 (235)
Q Consensus 157 --------------~~eeal~~~~~al~~~P~n~~a---------------------------------w~~r~~~l~~l 189 (235)
.-|+|..+++++++++|....| ++++|.++...
T Consensus 405 LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 405 LTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQ 484 (564)
T ss_pred hhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 1356677777777777755544 44455555555
Q ss_pred CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 190 GEPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
+.+++|++.|..|+.+||+|..+.-.+..+-+.+.
T Consensus 485 Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 55789999999999999999988776665544443
No 80
>KOG4162|consensus
Probab=99.32 E-value=3.1e-11 Score=113.02 Aligned_cols=137 Identities=16% Similarity=0.223 Sum_probs=122.7
Q ss_pred hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHH
Q psy4772 68 SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYR 147 (235)
Q Consensus 68 ~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r 147 (235)
..|...+.+....+..+ +|..+...+-.+.|-.+..| +.+|.++...|..+||..+|..++.+||+++.+..-+
T Consensus 651 ~lwllaa~~~~~~~~~~-----~a~~CL~Ea~~~~~l~~~~~-~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDD-----EARSCLLEASKIDPLSASVY-YLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHhcCCch-----HHHHHHHHHHhcchhhHHHH-HHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 45667777777776654 57778889999999999999 6899999999999999999999999999999999999
Q ss_pred HHHHHHhhH-hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCCh
Q psy4772 148 REILKALNK-DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 148 ~~~l~~l~~-~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~ 210 (235)
|.++.++|. ...+...++..+++++|.|+.+|+++|-++.++|+...|-+||+.|+.+++.++
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 999999984 244555599999999999999999999999999999999999999999999886
No 81
>KOG3060|consensus
Probab=99.31 E-value=1.1e-10 Score=97.30 Aligned_cols=139 Identities=14% Similarity=0.183 Sum_probs=125.7
Q ss_pred hhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccccc
Q psy4772 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~ 123 (235)
+..|.+++|+++|+..|+-||.+..++-.+-.++..+|+.. +||+..++-+...|.+.++| ..++.++...|.+
T Consensus 97 Ea~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l-----~aIk~ln~YL~~F~~D~EAW-~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL-----EAIKELNEYLDKFMNDQEAW-HELAEIYLSEGDF 170 (289)
T ss_pred HHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHhcCcHHHH-HHHHHHHHhHhHH
Confidence 45689999999999999999999999998888888999875 69999999999999999999 5799999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNK--DLHQELKYIGEKIKENSKNYQVWRHRQIIVEW 188 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~--~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~ 188 (235)
+.|.-|++.++-++|-++..+...+.++.-+|. +++-+.++|.++++++|+|..+|+....+-..
T Consensus 171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999888763 46789999999999999999999987655433
No 82
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.31 E-value=3.1e-10 Score=102.06 Aligned_cols=158 Identities=13% Similarity=0.099 Sum_probs=141.2
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
.+|....++|.++...+..|+++ +|+..++..+...|+|+..| -.+|.++.+.++..+|++.+++++.++|..+
T Consensus 301 ~~~~~~aa~YG~A~~~~~~~~~d-----~A~~~l~~L~~~~P~N~~~~-~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 301 SKRGGLAAQYGRALQTYLAGQYD-----EALKLLQPLIAAQPDNPYYL-ELAGDILLEANKAKEAIERLKKALALDPNSP 374 (484)
T ss_pred hCccchHHHHHHHHHHHHhcccc-----hHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Confidence 34899999999999999999987 68999999999999999999 4789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
..+.++|.+|.++|+ ..+|+..+++.+..+|.++..|..++.++..+|+-.++...+.....+.-+-..+......+.+
T Consensus 375 ~l~~~~a~all~~g~-~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 375 LLQLNLAQALLKGGK-PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHHhcCC-hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999995 8999999999999999999999999999999999877777777777777777666666666665
Q ss_pred hcCCc
Q psy4772 222 LLDDD 226 (235)
Q Consensus 222 ~l~~~ 226 (235)
.++..
T Consensus 454 ~~~~~ 458 (484)
T COG4783 454 QVKLG 458 (484)
T ss_pred hccCC
Confidence 55444
No 83
>PRK11906 transcriptional regulator; Provisional
Probab=99.31 E-value=1e-10 Score=105.41 Aligned_cols=155 Identities=7% Similarity=0.019 Sum_probs=135.9
Q ss_pred cHHHHHHHHHhHH---hcCCCchhHhhhHHHHHhhc---CCC-CHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc
Q psy4772 48 LFSDELSYIEGLI---SHDVRNNSAWTQRYFVINHT---TQF-TPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG 120 (235)
Q Consensus 48 ~~~~Al~~~~~aL---~~~P~~~~a~~~~g~~l~~~---~~~-~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~ 120 (235)
..+.|+.+|.+|+ .++|.++.+|-.+++|.... |-. .+....+|+..-.++++++|.++.+. ...|.++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~-~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKIL-AIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHhh
Confidence 4589999999999 99999999999999998865 222 35677889999999999999999999 5899999999
Q ss_pred cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH-HHHcCCchHHHHHH
Q psy4772 121 EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII-VEWMGEPDEELALT 199 (235)
Q Consensus 121 ~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~-l~~l~~~~~Al~~~ 199 (235)
++++.|+..|++|+.++|+++.+|+.+|+++.--|+ .++|+..++++++++|.-..+=.-+-++ .+--...++++.+|
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~-~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK-IEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 999999999999999999999999999999999995 8999999999999999988887777777 56666678888777
Q ss_pred HHHHH
Q psy4772 200 AAILA 204 (235)
Q Consensus 200 ~~ai~ 204 (235)
-+-.+
T Consensus 431 ~~~~~ 435 (458)
T PRK11906 431 YKETE 435 (458)
T ss_pred hhccc
Confidence 55443
No 84
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.31 E-value=8.2e-11 Score=114.58 Aligned_cols=172 Identities=7% Similarity=0.002 Sum_probs=142.1
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALAL 129 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~ 129 (235)
...+.++--.+-+.|..+...+..+++..+.|+++ .|+..|.++++.+|.++.+. +-...++...|+.++|+..
T Consensus 17 ~~~~~~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~-----~Al~~L~qaL~~~P~~~~av-~dll~l~~~~G~~~~A~~~ 90 (822)
T PRK14574 17 MTLLALFISGFVVNPAMADTQYDSLIIRARAGDTA-----PVLDYLQEESKAGPLQSGQV-DDWLQIAGWAGRDQEVIDV 90 (822)
T ss_pred HHHHHHHHcccccCccchhHHHHHHHHHHhCCCHH-----HHHHHHHHHHhhCccchhhH-HHHHHHHHHcCCcHHHHHH
Confidence 45566666677889999999999999999999985 79999999999999997554 2455677778999999999
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC
Q psy4772 130 TADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 130 ~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n 209 (235)
+++++.-.|..+.+....+.++...| ++++|+..|+++++++|+|+.++..++.++...++.++|++.+++++..+|.+
T Consensus 91 ~eka~~p~n~~~~~llalA~ly~~~g-dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 91 YERYQSSMNISSRGLASAARAYRNEK-RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV 169 (822)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch
Confidence 99999444444444444477999999 59999999999999999999999999999999999999999999999999996
Q ss_pred hHHhHHHHHHHhhcCCcccc
Q psy4772 210 YHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 210 ~~aw~~r~~~l~~l~~~~~~ 229 (235)
... ..++++...+++..++
T Consensus 170 ~~~-l~layL~~~~~~~~~A 188 (822)
T PRK14574 170 QNY-MTLSYLNRATDRNYDA 188 (822)
T ss_pred HHH-HHHHHHHHhcchHHHH
Confidence 665 5556655444554333
No 85
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.30 E-value=5.5e-11 Score=82.13 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=78.8
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
+.+|.++...|++++|+..+++++...|.+..+|..++.++...++ +++|+.+++++++..|.+..+|..++.++...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK-YEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4677777778888888888888888888888888888888888874 788888888888888888888888888888888
Q ss_pred CchHHHHHHHHHHHhCCC
Q psy4772 191 EPDEELALTAAILAQDAK 208 (235)
Q Consensus 191 ~~~~Al~~~~~ai~ldp~ 208 (235)
++++|...+.+++..+|.
T Consensus 83 ~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 83 KYEEALEAYEKALELDPN 100 (100)
T ss_pred hHHHHHHHHHHHHccCCC
Confidence 888888888888877763
No 86
>KOG1129|consensus
Probab=99.30 E-value=2e-11 Score=105.19 Aligned_cols=177 Identities=10% Similarity=0.001 Sum_probs=153.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
......|+..+..-|...|.+...+...+.|...+++++ +|++.|+.+++++|.|.++.. ..|.-+.-.++.+-
T Consensus 269 idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~-----~a~~lYk~vlk~~~~nvEaiA-cia~~yfY~~~PE~ 342 (478)
T KOG1129|consen 269 IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE-----DALQLYKLVLKLHPINVEAIA-CIAVGYFYDNNPEM 342 (478)
T ss_pred hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH-----HHHHHHHHHHhcCCccceeee-eeeeccccCCChHH
Confidence 456789999999999999999999999999999988875 689999999999999999883 57777888888999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC---CChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENS---KNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P---~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
|+.+|.++|.+--.+++.+.+.|.|...-++ ++-++.++++++..-. .-...|+++|.+.-..|++.-|-.+|+-+
T Consensus 343 AlryYRRiLqmG~~speLf~NigLCC~yaqQ-~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 343 ALRYYRRILQMGAQSPELFCNIGLCCLYAQQ-IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA 421 (478)
T ss_pred HHHHHHHHHHhcCCChHHHhhHHHHHHhhcc-hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHH
Confidence 9999999999999999999999999998885 8999999999887543 34568999999999999999999999999
Q ss_pred HHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 203 LAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 203 i~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
+--||+|..+++|++.+-.--|+-..+
T Consensus 422 L~~d~~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 422 LTSDAQHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred hccCcchHHHHHhHHHHHhhcCchHHH
Confidence 999999999999999887666654433
No 87
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.30 E-value=6.1e-11 Score=94.53 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=65.4
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPAN---YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVE 187 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~ 187 (235)
+..|.++...|++++|+..+.+++.+.|+. +.+|+++|.++..+|+ +++|+.+++++++++|.+..+|.+++.++.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~-~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE-HTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 345555555666666666666666555442 2355666666666663 566666666666666666666666666555
Q ss_pred -------HcCCc-------hHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 188 -------WMGEP-------DEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 188 -------~l~~~-------~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
.+|++ .+|+..+++++..+|.+.. ..+..+..+|+
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~---~~~~~~~~~~~ 166 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI---EAQNWLKITGR 166 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH---HHHHHHHHhcC
Confidence 44443 4677777888888887662 33444444444
No 88
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.30 E-value=3.8e-11 Score=96.20 Aligned_cols=134 Identities=10% Similarity=0.128 Sum_probs=90.4
Q ss_pred CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHcCCC
Q psy4772 63 DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSERALALTADAITMNPA 139 (235)
Q Consensus 63 ~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~ 139 (235)
+|..+.+++++|.++...|+++ +|+..|.+++.+.|+.. .+| +.+|.++...|++++|+..+.+++.++|+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYA-----EALENYEEALKLEEDPNDRSYIL-YNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHhhccchHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3355666777777777777664 67777777777766543 356 46777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 140 NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 140 ~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
+..++..+|.++..+++ ...+...++.++. .+.+|++++++++.++|++. .-.+..
T Consensus 105 ~~~~~~~lg~~~~~~g~-~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~---~~~~~~ 160 (172)
T PRK02603 105 QPSALNNIAVIYHKRGE-KAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY---IEAQNW 160 (172)
T ss_pred cHHHHHHHHHHHHHcCC-hHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH---HHHHHH
Confidence 77777777777777763 4555554444432 25788889999999999882 233444
Q ss_pred HhhcCCc
Q psy4772 220 INLLDDD 226 (235)
Q Consensus 220 l~~l~~~ 226 (235)
+...|+.
T Consensus 161 ~~~~~~~ 167 (172)
T PRK02603 161 LKTTGRS 167 (172)
T ss_pred HHhcCcc
Confidence 4445544
No 89
>KOG2003|consensus
Probab=99.29 E-value=8.6e-11 Score=104.98 Aligned_cols=176 Identities=9% Similarity=0.048 Sum_probs=140.7
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|++++|.++|..||.-+.+..+++++.|.....+|+.+ +|+++|-|+..+--++.... +.++.|+..++....|
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ld-----eald~f~klh~il~nn~evl-~qianiye~led~aqa 577 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLD-----EALDCFLKLHAILLNNAEVL-VQIANIYELLEDPAQA 577 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHH-----HHHHHHHHHHHHHHhhHHHH-HHHHHHHHHhhCHHHH
Confidence 67788888888888888888888888888877777764 67788877777777777777 5777777778888888
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhH---------------------------------hHHHHHHHHHHHHHhCC
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNK---------------------------------DLHQELKYIGEKIKENS 173 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~---------------------------------~~eeal~~~~~al~~~P 173 (235)
++.+.++..+-|.++.++..++.+|.+-|. .+++++.+++++--+.|
T Consensus 578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 888888888888888888888887776651 36889999999988988
Q ss_pred CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccc
Q psy4772 174 KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDR 228 (235)
Q Consensus 174 ~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~ 228 (235)
....=-...+.++.+.|+|++|++.|+..-..-|.|..+.-++--+.--||-.+.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~ 712 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDA 712 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhH
Confidence 8766556677888999999999999999999999999998887777766666543
No 90
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.29 E-value=2.2e-11 Score=82.55 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC-CchHHHHHHHHHHHhCC
Q psy4772 140 NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG-EPDEELALTAAILAQDA 207 (235)
Q Consensus 140 ~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~-~~~~Al~~~~~ai~ldp 207 (235)
++.+|+.+|.++...++ +++|+.+|+++|+++|+++.+|+++|.++..+| ++.+|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~-~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGD-YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555555666655553 566666666666666666666666666665555 45566666666665555
No 91
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.28 E-value=2e-10 Score=103.85 Aligned_cols=181 Identities=12% Similarity=0.054 Sum_probs=120.9
Q ss_pred hhhhcHHHHHHHHHhHHhcCCCchhHh-hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 44 QKCNLFSDELSYIEGLISHDVRNNSAW-TQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL~~~P~~~~a~-~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
...|+++.|..++.++.+.+|++..+. ...+.+....|+++ +|+..++++++.+|+++.+. ...+.++...|+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~-----~Al~~l~~~~~~~P~~~~al-~ll~~~~~~~gd 202 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENH-----AARHGVDKLLEVAPRHPEVL-RLAEQAYIRTGA 202 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHh
Confidence 334566666666666666666664333 23355555666553 56666666666666666666 345566666666
Q ss_pred cHHHHHHHHHHHHcCCC------------------------------------------ChHHHHHHHHHHHHhhH----
Q psy4772 123 SERALALTADAITMNPA------------------------------------------NYTVWQYRREILKALNK---- 156 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~------------------------------------------~~~aw~~r~~~l~~l~~---- 156 (235)
+++|+..+.++.+..+. ++.++...+..+...|.
T Consensus 203 w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 203 WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHH
Confidence 66666544444433322 22222222222222221
Q ss_pred --------------------------hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCCh
Q psy4772 157 --------------------------DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 157 --------------------------~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~ 210 (235)
+.++++..+++.++.+|+|+.....+|.++...+++++|.+.++++++++|++.
T Consensus 283 ~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 283 QQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred HHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 467899999999999999999999999999999999999999999999999976
Q ss_pred HHhHHHHHHHhhcCCcccccc
Q psy4772 211 HAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 211 ~aw~~r~~~l~~l~~~~~~~~ 231 (235)
. +..++-++..+|+.+++.-
T Consensus 363 ~-~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 363 D-YAWLADALDRLHKPEEAAA 382 (398)
T ss_pred H-HHHHHHHHHHcCCHHHHHH
Confidence 5 5578888888888876643
No 92
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.26 E-value=2e-11 Score=82.75 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=51.2
Q ss_pred CCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC
Q psy4772 105 NESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENS 173 (235)
Q Consensus 105 ~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P 173 (235)
++..| +.+|.++...|++++|+.+|+++++++|+++.+|+++|.++..+|+++++|+.+++++++++|
T Consensus 2 ~a~~~-~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAW-YNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHH-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34556 467777777788888888888888888888888888888887777227788888888887777
No 93
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.26 E-value=1.6e-10 Score=85.50 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=57.6
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC---hHHhHHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPAN---YTVWQYRREILKALNKDLHQELKYIGEKIKENSKN---YQVWRHRQI 184 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n---~~aw~~r~~ 184 (235)
+.+|..+...|++++|+..+.+++..+|++ ..+++.+|.++...|+ +++|+..+++++..+|.+ ..++..+|.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK-YADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 345555555556666666666666555554 3455556666666553 566666666666655554 345555666
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 185 IVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 185 ~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
++..+|++++|+..+++++...|++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 666666666666666666666665544
No 94
>KOG1129|consensus
Probab=99.25 E-value=1.4e-11 Score=106.15 Aligned_cols=170 Identities=10% Similarity=0.061 Sum_probs=154.4
Q ss_pred hhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccccc
Q psy4772 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~ 123 (235)
+.++.+++|+++|..+++++|-|.++.-..|.-++.-++- +=|+.+|.++|++--.+++.+ .++|.|-.-.+++
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~P-----E~AlryYRRiLqmG~~speLf-~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNP-----EMALRYYRRILQMGAQSPELF-CNIGLCCLYAQQI 374 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCCh-----HHHHHHHHHHHHhcCCChHHH-hhHHHHHHhhcch
Confidence 4578899999999999999999999999988888877664 359999999999999999999 4799999999999
Q ss_pred HHHHHHHHHHHHcCC---CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHH
Q psy4772 124 ERALALTADAITMNP---ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTA 200 (235)
Q Consensus 124 ~eAl~~~~~al~l~P---~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~ 200 (235)
+-+|.+|++++...- .-.++|++.|.+....| ++.-|..|++-++.-||++..++++++.+-.+.|+.++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iG-D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIG-DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEecc-chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 999999999997643 45679999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHhHHHHHHH
Q psy4772 201 AILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 201 ~ai~ldp~n~~aw~~r~~~l 220 (235)
.|-.+.|.-+...+|++.+-
T Consensus 454 ~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 454 AAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred HhhhhCccccccccceeEEe
Confidence 99999999988888776543
No 95
>KOG1156|consensus
Probab=99.24 E-value=3.4e-10 Score=104.49 Aligned_cols=175 Identities=10% Similarity=0.140 Sum_probs=152.6
Q ss_pred CCCCCchhHhhhhh-hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchh
Q psy4772 31 DDGPTPVVAIAYSQ-KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPW 109 (235)
Q Consensus 31 ~~~~~~~~~~~y~~-~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw 109 (235)
+|.++..|..+... ..+.|+..+...+.+|+..|+..+.+..+|..+..+|+-. +|...+..++..++.++.+|
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~-----ea~~~vr~glr~d~~S~vCw 78 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKE-----EAYELVRLGLRNDLKSHVCW 78 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchH-----HHHHHHHHHhccCcccchhH
Confidence 34445555433332 2468999999999999999999999999999999999864 68999999999999999999
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l 189 (235)
+..|.++..-.+|.+|++||..||.+.|+|-+.|.-.+.+..+++ +++.....-.+.++.+|.+-..|...+.+..-+
T Consensus 79 -Hv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR-d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 79 -HVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR-DYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL 156 (700)
T ss_pred -HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999998 589999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhCCCChHH
Q psy4772 190 GEPDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~a 212 (235)
|++..|++.++.-+.......++
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~ 179 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSK 179 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCH
Confidence 99999998877776655333333
No 96
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.23 E-value=1.6e-10 Score=85.55 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=93.4
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC---
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSERALALTADAITMNPAN--- 140 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~--- 140 (235)
+++++.+|..+...|+++ +|+..|.+++..+|+++ .++ +.+|.++...|++++|+..+++++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYA-----DAIQAFQAFLKKYPKSTYAPNAH-YWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA 75 (119)
T ss_pred cHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHCCCccccHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc
Confidence 467889999999998875 79999999999999874 577 679999999999999999999999999886
Q ss_pred hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHh
Q psy4772 141 YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVW 179 (235)
Q Consensus 141 ~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw 179 (235)
..++...|.++..++ ++++|+.+++++++.+|++..+-
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 76 PDALLKLGMSLQELG-DKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred cHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHCcCChhHH
Confidence 678999999999999 48999999999999999987643
No 97
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.23 E-value=4.9e-10 Score=104.37 Aligned_cols=148 Identities=5% Similarity=-0.031 Sum_probs=118.1
Q ss_pred HHhcCCCchhHh--hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc--------cccHHHHH
Q psy4772 59 LISHDVRNNSAW--TQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG--------EKSERALA 128 (235)
Q Consensus 59 aL~~~P~~~~a~--~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~--------~~~~eAl~ 128 (235)
+...-|.+.+|| +.+|.-+... +..+..++|+.+|++|++++|++..+|. .++.++... .....+..
T Consensus 329 ~~~~~~~~~~Ay~~~lrg~~~~~~--~~~~~~~~A~~lle~Ai~ldP~~a~a~A-~la~~~~~~~~~~~~~~~~l~~a~~ 405 (517)
T PRK10153 329 LQQGLPHQGAALTLFYQAHHYLNS--GDAKSLNKASDLLEEILKSEPDFTYAQA-EKALADIVRHSQQPLDEKQLAALST 405 (517)
T ss_pred HhccCCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHHHhcCCccHHHHHHHHH
Confidence 334567888888 5666655544 4456778999999999999999999984 566665432 12345566
Q ss_pred HHHHHHHc--CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 129 LTADAITM--NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 129 ~~~~al~l--~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
...+++.+ +|..+.++.-++.+....| ++++|...+++++.++| +..+|..+|.++...|++++|++.|++|+.++
T Consensus 406 ~~~~a~al~~~~~~~~~~~ala~~~~~~g-~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 406 ELDNIVALPELNVLPRIYEILAVQALVKG-KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHhhhcccCcCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66776664 7777777887887777777 59999999999999999 68899999999999999999999999999999
Q ss_pred CCChH
Q psy4772 207 AKNYH 211 (235)
Q Consensus 207 p~n~~ 211 (235)
|.++.
T Consensus 484 P~~pt 488 (517)
T PRK10153 484 PGENT 488 (517)
T ss_pred CCCch
Confidence 99884
No 98
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.22 E-value=1.7e-10 Score=92.38 Aligned_cols=105 Identities=10% Similarity=0.177 Sum_probs=91.0
Q ss_pred hhhcHHHHHHHHHhHHhcCCCc---hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc
Q psy4772 45 KCNLFSDELSYIEGLISHDVRN---NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE 121 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~---~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~ 121 (235)
..|++++|+.+|+++++..|+. +.+|+++|.++..+|+++ +|+..+.+++.++|.+..++ ..+|.++...|
T Consensus 47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g 120 (172)
T PRK02603 47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHD-----KALEYYHQALELNPKQPSAL-NNIAVIYHKRG 120 (172)
T ss_pred HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCcccHHHH-HHHHHHHHHcC
Confidence 3589999999999999988764 579999999999999885 79999999999999999999 57999999999
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
+...+...+..++. .+++|+++++++++.+|.++
T Consensus 121 ~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 121 EKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred ChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCchhH
Confidence 98887766665542 37889999999999999984
No 99
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.22 E-value=2.8e-10 Score=90.66 Aligned_cols=121 Identities=11% Similarity=0.098 Sum_probs=98.0
Q ss_pred HHHHHHHHhHHhcCCCc--hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccH
Q psy4772 50 SDELSYIEGLISHDVRN--NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~--~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~ 124 (235)
..+...+...++.++.. +.+|+..|.++...|+++ +|+..|.+++.+.|++. .+| +++|.++...|+++
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~-----~A~~~~~~al~l~~~~~~~~~~~-~~lg~~~~~~g~~~ 89 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYA-----EALQNYYEAMRLEIDPYDRSYIL-YNIGLIHTSNGEHT 89 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhccccchhhHHHH-HHHHHHHHHcCCHH
Confidence 44445555555666666 778899999999998875 79999999999987744 478 57999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHh-------hH------hHHHHHHHHHHHHHhCCCCh
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKAL-------NK------DLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l-------~~------~~eeal~~~~~al~~~P~n~ 176 (235)
+|+.++++++.++|.+..++.+++.++..+ |+ .+++++..+++++..+|.+.
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999999999999999999999999944 42 24577788888999999875
No 100
>KOG2003|consensus
Probab=99.22 E-value=1.4e-10 Score=103.59 Aligned_cols=170 Identities=13% Similarity=0.150 Sum_probs=141.4
Q ss_pred hhHhhhhhhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q psy4772 37 VVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAV 116 (235)
Q Consensus 37 ~~~~~y~~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~i 116 (235)
++.+.|-+...+|.+|-++-+.||+.+..|+.+..++|.+.+..|+++ +|.+.|..+|.-+..+..+. |+.|..
T Consensus 460 l~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d-----ka~~~ykeal~ndasc~eal-fniglt 533 (840)
T KOG2003|consen 460 LCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD-----KAAEFYKEALNNDASCTEAL-FNIGLT 533 (840)
T ss_pred hHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH-----HHHHHHHHHHcCchHHHHHH-HHhccc
Confidence 444445554567889999999999999999999999999888888764 78899999999999999998 788999
Q ss_pred HhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC-----
Q psy4772 117 VNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE----- 191 (235)
Q Consensus 117 l~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~----- 191 (235)
...+|+.++||+||-++-.+--.+.+++...+.+|+-|. +-..|++++.++..+-|.++.....++.++.+-|+
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le-d~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE-DPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-CHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 999999999999998887777788899999999998887 57889999999999999999999999999888886
Q ss_pred -----------------------------chHHHHHHHHHHHhCCCChHHhH
Q psy4772 192 -----------------------------PDEELALTAAILAQDAKNYHAWQ 214 (235)
Q Consensus 192 -----------------------------~~~Al~~~~~ai~ldp~n~~aw~ 214 (235)
.++++.++++|--+-|+- +-|.
T Consensus 613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~-~kwq 663 (840)
T KOG2003|consen 613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ-SKWQ 663 (840)
T ss_pred hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH-HHHH
Confidence 267778888887777754 3343
No 101
>PRK11906 transcriptional regulator; Provisional
Probab=99.21 E-value=7.9e-10 Score=99.68 Aligned_cols=157 Identities=11% Similarity=0.032 Sum_probs=135.3
Q ss_pred HHhcCCCch---hHh----hhHHHHHhhcCCCCHHHHHHHHHHHHHHH---HhCCCCCchhhHHHHHHHhcc---c----
Q psy4772 59 LISHDVRNN---SAW----TQRYFVINHTTQFTPEVIQREIDYCRDKI---QIAPKNESPWNYLRGAVVNAG---E---- 121 (235)
Q Consensus 59 aL~~~P~~~---~a~----~~~g~~l~~~~~~~e~~~~~Al~~~~kal---~l~p~~~~aw~~~~g~il~~~---~---- 121 (235)
+...-|++. ++| +.+|.-.... +..+..+.|+..|.+++ .++|.+..++ ..++.|+..+ |
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~--~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~-~~lA~~h~~~~~~g~~~~ 316 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYD--FTPESIYRAMTIFDRLQNKSDIQTLKTECY-CLLAECHMSLALHGKSEL 316 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhc--cCHHHHHHHHHHHHHHhhcccCCcccHHHH-HHHHHHHHHHHHhcCCCc
Confidence 455668888 777 7777666655 45567889999999999 9999999999 4677776543 2
Q ss_pred --ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHH
Q psy4772 122 --KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 122 --~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
.-.+|+.+-.++++++|.++.|....|.++-..++ ++.++..+++|+.++|+.+.+|+..|+++...|+.++|++.+
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~-~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ-AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc-hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 24788999999999999999999999999999995 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCChHHhHHHHHH
Q psy4772 200 AAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 200 ~~ai~ldp~n~~aw~~r~~~ 219 (235)
+++++++|.-..+=.-+-|+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred HHHhccCchhhHHHHHHHHH
Confidence 99999999988775555554
No 102
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.20 E-value=1.8e-10 Score=79.46 Aligned_cols=99 Identities=16% Similarity=0.219 Sum_probs=88.1
Q ss_pred HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHH
Q psy4772 69 AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148 (235)
Q Consensus 69 a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~ 148 (235)
+|+.+|.++...|++. +|+..+.++++..|.+..+| +.+|.++...+++++|+..+++++.+.|.+..++..++
T Consensus 2 ~~~~~a~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 75 (100)
T cd00189 2 ALLNLGNLYYKLGDYD-----EALEYYEKALELDPDNADAY-YNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHHhcHH-----HHHHHHHHHHhcCCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 5788888888888764 78999999999999998888 57899999999999999999999999999999999999
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 149 EILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 149 ~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
.++...|+ +++|...+.++++.+|.
T Consensus 76 ~~~~~~~~-~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 76 LAYYKLGK-YEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHh-HHHHHHHHHHHHccCCC
Confidence 99999984 89999999999988874
No 103
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.20 E-value=1e-09 Score=99.53 Aligned_cols=181 Identities=9% Similarity=-0.060 Sum_probs=139.6
Q ss_pred hhhhcHHHHHHHHHhHHhcCCCch-hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 44 QKCNLFSDELSYIEGLISHDVRNN-SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL~~~P~~~-~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
...|+++.|..++.++.+..|++. .+...++.++...|+++ .|++.+.++++.+|+++.++ ...|.++...|+
T Consensus 129 ~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~-----~Al~~l~~l~~~~P~~~~~l-~ll~~~~~~~~d 202 (409)
T TIGR00540 129 QQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH-----AARHGVDKLLEMAPRHKEVL-KLAEEAYIRSGA 202 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHhh
Confidence 446899999999999999999986 46666799999999875 79999999999999999998 578999999999
Q ss_pred cHHHHHHHHHHHHcC--------------------------------------C----CChHHHHHHHHHHHHhhHhHHH
Q psy4772 123 SERALALTADAITMN--------------------------------------P----ANYTVWQYRREILKALNKDLHQ 160 (235)
Q Consensus 123 ~~eAl~~~~~al~l~--------------------------------------P----~~~~aw~~r~~~l~~l~~~~ee 160 (235)
+++|++.+.+.++.. | +++.++...+..+...| .+++
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g-~~~~ 281 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD-DHDS 281 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC-ChHH
Confidence 888887777666442 2 23444444444555555 4788
Q ss_pred HHHHHHHHHHhCCCChHHh--HHHHHHHHHcCCchHHHHHHHHHHHhCCCCh--HHhHHHHHHHhhcCCcccccc
Q psy4772 161 ELKYIGEKIKENSKNYQVW--RHRQIIVEWMGEPDEELALTAAILAQDAKNY--HAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 161 al~~~~~al~~~P~n~~aw--~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~--~aw~~r~~~l~~l~~~~~~~~ 231 (235)
|+..++++++.+|++.... ..+.......++..++++.++++++.+|+|+ .....+|+++...|+-.+|.-
T Consensus 282 A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~ 356 (409)
T TIGR00540 282 AQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAAD 356 (409)
T ss_pred HHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHH
Confidence 9999999999999887642 3333444445677888899999999999999 777888998877777765543
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.18 E-value=7.7e-10 Score=92.60 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=137.5
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|+-+.++.+..+++-.+|++...+.-.|......|+|. +|+..+.++..++|.+..+|+ .+|.++-++|++++|
T Consensus 80 G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~-----~A~~~~rkA~~l~p~d~~~~~-~lgaaldq~Gr~~~A 153 (257)
T COG5010 80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFG-----EAVSVLRKAARLAPTDWEAWN-LLGAALDQLGRFDEA 153 (257)
T ss_pred ccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchH-----HHHHHHHHHhccCCCChhhhh-HHHHHHHHccChhHH
Confidence 55678888889999999999999999999999999986 799999999999999999995 899999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
-..|.+++++.|..+.+.+|.|..+.--| +++.|...+.++...-+.+..+-.+++++....|++.+|-+....
T Consensus 154 r~ay~qAl~L~~~~p~~~nNlgms~~L~g-d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 154 RRAYRQALELAPNEPSIANNLGMSLLLRG-DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHhccCCchhhhhHHHHHHHcC-CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999999999999999999998888 599999999999999999999999999999999999988765443
No 105
>KOG1128|consensus
Probab=99.17 E-value=2.1e-10 Score=107.05 Aligned_cols=156 Identities=14% Similarity=0.228 Sum_probs=125.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCC-----------------------CHHHHHHHHHHHHHHHHhCC
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQF-----------------------TPEVIQREIDYCRDKIQIAP 103 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~-----------------------~e~~~~~Al~~~~kal~l~p 103 (235)
|+-.+|.....+-|+ .|.++..|..+|.++....=| ..+.++++...++..++++|
T Consensus 438 g~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 438 GQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred cccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 344566666666677 788888888888886544311 12456778888888888888
Q ss_pred CCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 104 KNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 104 ~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
-....| |++|.+...+++++.|.++|.+++.++|++..+|++....+..+++ -.+|..++++|++.+-+|.+.|-|-.
T Consensus 517 lq~~~w-f~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-k~ra~~~l~EAlKcn~~~w~iWENym 594 (777)
T KOG1128|consen 517 LQLGTW-FGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-KKRAFRKLKEALKCNYQHWQIWENYM 594 (777)
T ss_pred cchhHH-HhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh-hHHHHHHHHHHhhcCCCCCeeeechh
Confidence 888888 7888888888888888888888888888888888888888888885 68888888888888888888888888
Q ss_pred HHHHHcCCchHHHHHHHHHHHh
Q psy4772 184 IIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 184 ~~l~~l~~~~~Al~~~~~ai~l 205 (235)
.+....|.+++|+..|.+.+.+
T Consensus 595 lvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 595 LVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhcccHHHHHHHHHHHHHh
Confidence 8888888888888888887664
No 106
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.16 E-value=7.6e-10 Score=103.07 Aligned_cols=128 Identities=5% Similarity=-0.009 Sum_probs=111.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC---HHHHHHHHHHHHHHHHh--CCCCCchhhHHHHHHHhccc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT---PEVIQREIDYCRDKIQI--APKNESPWNYLRGAVVNAGE 121 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~---e~~~~~Al~~~~kal~l--~p~~~~aw~~~~g~il~~~~ 121 (235)
+.+..|+.+|++|++++|+++.+|-.++.++.....+. +..+.++.....+++.+ +|..+.++ ..+|.+....|
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~-~ala~~~~~~g 434 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIY-EILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHH-HHHHHHHHhcC
Confidence 35789999999999999999999999999886654443 34566777777887775 78888888 46888888889
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
++++|...+++|+.++| +..+|..+|.++...|+ .++|++.+++|++++|.++.
T Consensus 435 ~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~-~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 435 KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD-NRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCch
Confidence 99999999999999999 58999999999999995 99999999999999999885
No 107
>KOG0495|consensus
Probab=99.16 E-value=1e-09 Score=101.70 Aligned_cols=172 Identities=12% Similarity=0.108 Sum_probs=149.9
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.+..++|+.+++.+|+..|.+...|..+|.++.++++. +.|-+.|..-++.-|.+...| ..+..+-.+.|..-.
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i-----e~aR~aY~~G~k~cP~~ipLW-llLakleEk~~~~~r 737 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI-----EMAREAYLQGTKKCPNSIPLW-LLLAKLEEKDGQLVR 737 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH-----HHHHHHHHhccccCCCCchHH-HHHHHHHHHhcchhh
Confidence 46789999999999999999999999999999998765 468899999999999999999 577777788889999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC--------------
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE-------------- 191 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~-------------- 191 (235)
|...++++...||++...|...-.+-.+.| ..+.|-..+.+||+.-|++...|..-.++.-+-++
T Consensus 738 AR~ildrarlkNPk~~~lwle~Ir~ElR~g-n~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~d 816 (913)
T KOG0495|consen 738 ARSILDRARLKNPKNALLWLESIRMELRAG-NKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHD 816 (913)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCC
Confidence 999999999999999999999888888888 47999999999999999998888876665543332
Q ss_pred ----------------chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 192 ----------------PDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 192 ----------------~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
+++|.++|.+|+.+||++..+|.+.-......|
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 689999999999999999999887655555666
No 108
>KOG1156|consensus
Probab=99.15 E-value=6e-10 Score=102.90 Aligned_cols=138 Identities=14% Similarity=0.207 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHH
Q psy4772 87 VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIG 166 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~ 166 (235)
.+.+.+...+.+|+..|+|+... -.+|..+..+|+.++|..+...+++.+|++.-.||-.|.++..-+ .|.+|++||.
T Consensus 22 QYkkgLK~~~~iL~k~~eHgesl-AmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK-~Y~eaiKcy~ 99 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHGESL-AMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK-KYDEAIKCYR 99 (700)
T ss_pred HHHhHHHHHHHHHHhCCccchhH-HhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh-hHHHHHHHHH
Confidence 34589999999999999999999 589999999999999999999999999999999999999988887 5999999999
Q ss_pred HHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCc
Q psy4772 167 EKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 167 ~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~ 226 (235)
.|+.++|+|-+.|..++.+..++++++...+.=...+.++|++-..|.-.+...-.+|.-
T Consensus 100 nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 100 NALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988776665555543
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.15 E-value=5.5e-10 Score=108.59 Aligned_cols=147 Identities=7% Similarity=-0.001 Sum_probs=103.8
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC------------------
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE------------------ 106 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~------------------ 106 (235)
..+++++|++.++.++..+|+...+|+..|.++.+.+++.+ +... .++.+-+.+.
T Consensus 43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~-----~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~ 115 (906)
T PRK14720 43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLND-----SNLL--NLIDSFSQNLKWAIVEHICDKILLYGEN 115 (906)
T ss_pred hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhh-----hhhh--hhhhhcccccchhHHHHHHHHHHhhhhh
Confidence 45678888888888888888888888888887777777653 3332 6666666666
Q ss_pred -chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 107 -SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 107 -~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
.|. +.+|.|+.++|+.++|...++++|+++|+++.+.++.|..|... ++++|+.++.+|+++
T Consensus 116 k~Al-~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 116 KLAL-RTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hHHH-HHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH--------------
Confidence 666 56777777777777777777777777777777777777777666 367777777777665
Q ss_pred HHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 186 VEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 186 l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
+...+.+.++.+...+.+..+|.+..-+..
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~ 208 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYNSDDFDFFLR 208 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcCcccchHHHH
Confidence 333346667777777777777777766444
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.13 E-value=2.3e-09 Score=104.26 Aligned_cols=150 Identities=13% Similarity=0.049 Sum_probs=121.9
Q ss_pred hcHHHHHHHHHhHHhcCCCch-------------------hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc
Q psy4772 47 NLFSDELSYIEGLISHDVRNN-------------------SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES 107 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~-------------------~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~ 107 (235)
+.+.++... .++...+.+. .|++.+|.|+..+|+++ +|...++++|+++|+++.
T Consensus 79 ~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~-----ka~~~yer~L~~D~~n~~ 151 (906)
T PRK14720 79 RPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENK-----KLKGVWERLVKADRDNPE 151 (906)
T ss_pred cchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChH-----HHHHHHHHHHhcCcccHH
Confidence 556777766 9999999999 99999999999999986 799999999999999999
Q ss_pred hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH----
Q psy4772 108 PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ---- 183 (235)
Q Consensus 108 aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~---- 183 (235)
+.| +.|..+... +.++|+..+.+|+.+ +..-+ .+.++.+.+.+.++.+|.+..-..+.-
T Consensus 152 aLN-n~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~k-q~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~ 214 (906)
T PRK14720 152 IVK-KLATSYEEE-DKEKAITYLKKAIYR--------------FIKKK-QYVGIEEIWSKLVHYNSDDFDFFLRIERKVL 214 (906)
T ss_pred HHH-HHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhh-cchHHHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 996 689999988 999999999999986 33333 378888888888888888777644432
Q ss_pred ----------------HHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 184 ----------------IIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 184 ----------------~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
..+...+++++.+..++++++.+|+|.-+.....-++
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 2333344577889999999999999988877766665
No 111
>KOG1840|consensus
Probab=99.13 E-value=2.4e-09 Score=98.92 Aligned_cols=184 Identities=8% Similarity=0.026 Sum_probs=148.0
Q ss_pred hhcHHHHHHHHHhHHhc--------CCCchhHhhhHHHHHhhcCCCCHH--HHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q psy4772 46 CNLFSDELSYIEGLISH--------DVRNNSAWTQRYFVINHTTQFTPE--VIQREIDYCRDKIQIAPKNESPWNYLRGA 115 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--------~P~~~~a~~~~g~~l~~~~~~~e~--~~~~Al~~~~kal~l~p~~~~aw~~~~g~ 115 (235)
.+.|.+|+..|++||.+ +|.-+.++.+++.++...|+|+++ -.++|++.+.+.+..++....+-....+.
T Consensus 254 ~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 254 LGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 46789999999999987 788899999999999999999864 46777777777555555555444356788
Q ss_pred HHhcccccHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC--------CCChHHh
Q psy4772 116 VVNAGEKSERALALTADAITM--------NPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN--------SKNYQVW 179 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l--------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~--------P~n~~aw 179 (235)
+...++++++|+.++.+++++ +|.-+....++|.++...|+ +.+|.++++++|++. +.--...
T Consensus 334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK-YKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 899999999999999999875 23445677889999999995 999999999999865 3333477
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHh-------CCCChHHhHHHHHHHhhcCCccccc
Q psy4772 180 RHRQIIVEWMGEPDEELALTAAILAQ-------DAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 180 ~~r~~~l~~l~~~~~Al~~~~~ai~l-------dp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
++++..+...+++.+|-..|..++.+ +|+-...+.+++-++..+|+..+++
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 88899999999988888877777664 4666778889999999999986654
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.12 E-value=2.8e-09 Score=95.99 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=122.9
Q ss_pred HhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHh
Q psy4772 100 QIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVW 179 (235)
Q Consensus 100 ~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw 179 (235)
..+|.-..+| |.++......|.+++|+..++..+...|+|+..|-.++.++...++ ..+|++.+++++.++|..+..|
T Consensus 300 ~~~~~~~aa~-YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk-~~~A~e~~~kal~l~P~~~~l~ 377 (484)
T COG4783 300 RSKRGGLAAQ-YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK-AKEAIERLKKALALDPNSPLLQ 377 (484)
T ss_pred HhCccchHHH-HHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCccHHH
Confidence 3348888999 8888888899999999999999999999999999999999999995 9999999999999999999999
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 180 RHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 180 ~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
.++|.++.+.|++.+|+..+++.+.-+|.|+..|.+++-+...+|+.+++..
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 9999999999999999999999999999999999999999999999877654
No 113
>KOG4234|consensus
Probab=99.09 E-value=9.8e-10 Score=89.01 Aligned_cols=100 Identities=21% Similarity=0.192 Sum_probs=89.2
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChH-----HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYT-----VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVE 187 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~-----aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~ 187 (235)
-|.-+...|.|++|..-|..||++.|..++ .+.+|+-++.+|++ ++.|+..|.++|+++|.+-.|...|+.++.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k-~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK-WESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh-HHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 477788889999999999999999998876 67789999999995 899999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHHhCCCChHHh
Q psy4772 188 WMGEPDEELALTAAILAQDAKNYHAW 213 (235)
Q Consensus 188 ~l~~~~~Al~~~~~ai~ldp~n~~aw 213 (235)
++..+++|++.|++++++||....+-
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 99999999999999999999987653
No 114
>KOG0495|consensus
Probab=99.08 E-value=7.9e-09 Score=95.88 Aligned_cols=189 Identities=11% Similarity=0.193 Sum_probs=158.9
Q ss_pred CCchhHhhhhhhh---hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH-------------------------
Q psy4772 34 PTPVVAIAYSQKC---NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP------------------------- 85 (235)
Q Consensus 34 ~~~~~~~~y~~~~---~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e------------------------- 85 (235)
..++.=++|+... |+...|...+..|+..+|.+-++|...-.+.....+++.
T Consensus 582 kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 582 KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLE 661 (913)
T ss_pred cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHH
Confidence 4455555566432 788999999999999999999999988877776666542
Q ss_pred ---HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHH
Q psy4772 86 ---EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQEL 162 (235)
Q Consensus 86 ---~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal 162 (235)
+..++|+.+++.+|+..|.++..| ..+|.|+..+++.+.|...|..-++..|.++..|.-++.+-+..| ..-.|.
T Consensus 662 r~ld~~eeA~rllEe~lk~fp~f~Kl~-lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~-~~~rAR 739 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKSFPDFHKLW-LMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG-QLVRAR 739 (913)
T ss_pred HHhhhHHHHHHHHHHHHHhCCchHHHH-HHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc-chhhHH
Confidence 347788999999999999999999 689999999999999999999999999999999999888888888 488999
Q ss_pred HHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 163 KYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 163 ~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
..++++..+||+|...|......-.+.|+.+.|-....+|+.-=|++.-.|.--.++-..=+
T Consensus 740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999887776654333
No 115
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.2e-09 Score=90.05 Aligned_cols=124 Identities=15% Similarity=0.076 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh--HhHHHHHHH
Q psy4772 87 VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN--KDLHQELKY 164 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~--~~~eeal~~ 164 (235)
..++-+.-.+.-|+.||++...| ..+|.++..+|+...|+..|.+++++.|+++..+.-.+.++.... +.-.++...
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW-~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGW-DLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 35667778888999999999999 589999999999999999999999999999999999999888763 345788999
Q ss_pred HHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 165 IGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 165 ~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
++++++.||.|..+.+.+++.+...|+|.+|+...+..+...|.+..
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999999999999999999998887764
No 116
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.08 E-value=7e-10 Score=74.26 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=30.5
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
+|.++...|++++|+.+|+++++.+|+++.+|+.+|.++...|+ +++|+..++++++++|+|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR-YDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCC
Confidence 34444455555555555555555555555555555555555542 455555555555555544
No 117
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.07 E-value=6.4e-10 Score=74.46 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=55.9
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCCh
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~ 210 (235)
.+|.++...|+ +++|+.+++++++.+|+++.+|+.+|.++...|++++|+..+++++.++|+|+
T Consensus 2 ~~a~~~~~~g~-~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGD-YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTH-HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46788888884 99999999999999999999999999999999999999999999999999875
No 118
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.6e-09 Score=89.29 Aligned_cols=123 Identities=11% Similarity=0.055 Sum_probs=111.9
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc---cccH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG---EKSE 124 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~---~~~~ 124 (235)
..++.+.-.+.-|..||++++-|..+|.+++.+|+++ .|+..|.+++++.|+++..+ -..|.++... ....
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~-----~A~~AY~~A~rL~g~n~~~~-~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRAS-----DALLAYRNALRLAGDNPEIL-LGLAEALYYQAGQQMTA 210 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchh-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcCCcccH
Confidence 3578888999999999999999999999999999987 69999999999999999999 5788887653 2478
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
++...++++|.++|.+..+.+.++..+..-| ++.+|+..+++.+...|.+..
T Consensus 211 ~a~~ll~~al~~D~~~iral~lLA~~afe~g-~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 211 KARALLRQALALDPANIRALSLLAFAAFEQG-DYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999999999 599999999999999987753
No 119
>KOG1128|consensus
Probab=99.04 E-value=2.4e-09 Score=100.19 Aligned_cols=168 Identities=13% Similarity=0.180 Sum_probs=126.3
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc------
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA------ 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~------ 119 (235)
.|-.+.|+..|++. ..|-....|+...|+.. +|.....+-++ +|.++..| ..+|.+...
T Consensus 411 lGitksAl~I~Erl--------emw~~vi~CY~~lg~~~-----kaeei~~q~le-k~~d~~ly-c~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 411 LGITKSALVIFERL--------EMWDPVILCYLLLGQHG-----KAEEINRQELE-KDPDPRLY-CLLGDVLHDPSLYEK 475 (777)
T ss_pred cchHHHHHHHHHhH--------HHHHHHHHHHHHhcccc-----hHHHHHHHHhc-CCCcchhH-HHhhhhccChHHHHH
Confidence 46678888888774 66888889999998664 56666666666 77777777 457776443
Q ss_pred ----------------------ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 120 ----------------------GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 120 ----------------------~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
.++++++.++++..++++|-....|+.+|.+..++++ +..|.++|.+.+.++|+|..
T Consensus 476 awElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek-~q~av~aF~rcvtL~Pd~~e 554 (777)
T KOG1128|consen 476 AWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK-EQAAVKAFHRCVTLEPDNAE 554 (777)
T ss_pred HHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh-hHHHHHHHHHHhhcCCCchh
Confidence 2456777777788888888888888888888888874 77888888888888888888
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
+|++++.++.+.+.-.+|...++.|++.+-+|...|-|...+...+|....+
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence 8888888888888878888888888887777777777777777777665544
No 120
>KOG1174|consensus
Probab=99.02 E-value=1.6e-08 Score=89.75 Aligned_cols=171 Identities=8% Similarity=0.013 Sum_probs=127.0
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERAL 127 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl 127 (235)
-+..+..++-..++.-|.|.+.+-..|.|++..|++. +|+..|.++..+||...++.- .-|.++...|++++--
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~-----~a~~~Fe~~~~~dpy~i~~MD-~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF-----QAEDIFSSTLCANPDNVEAMD-LYAVLLGQEGGCEQDS 286 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch-----HHHHHHHHHhhCChhhhhhHH-HHHHHHHhccCHhhHH
Confidence 3678888999999999999999999999999999986 688889999999998887773 5667777777776666
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 128 ALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 128 ~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
......+.+......-|+--+-++..-+ +++.|+.+.+++|+.+|++.+++..+|.++..+++.++|+=.|+.|+.+-|
T Consensus 287 ~L~~~Lf~~~~~ta~~wfV~~~~l~~~K-~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 287 ALMDYLFAKVKYTASHWFVHAQLLYDEK-KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred HHHHHHHhhhhcchhhhhhhhhhhhhhh-hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 6666666666666666666666665555 377777777777777777777777777777777777777777777777777
Q ss_pred CChHHhHHHHHHHhhcCC
Q psy4772 208 KNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 208 ~n~~aw~~r~~~l~~l~~ 225 (235)
-.-..|..+--++...|+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhHHHHHHHHHHHHhhch
Confidence 666654444333333333
No 121
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.01 E-value=1e-09 Score=77.47 Aligned_cols=81 Identities=11% Similarity=0.127 Sum_probs=60.4
Q ss_pred ccccHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHH
Q psy4772 120 GEKSERALALTADAITMNPA--NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELA 197 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~--~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~ 197 (235)
.|++++|+..++++++.+|. +...|+.+|.|+.+.|+ +++|+..+++ ++.+|.+....+.+|.++..+|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~-y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK-YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH-HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC-HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677788888888888774 45667777888888874 7888888877 77777777777777888888888888887
Q ss_pred HHHHH
Q psy4772 198 LTAAI 202 (235)
Q Consensus 198 ~~~~a 202 (235)
.+++|
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77764
No 122
>KOG1840|consensus
Probab=99.01 E-value=4.4e-09 Score=97.16 Aligned_cols=179 Identities=10% Similarity=0.049 Sum_probs=140.2
Q ss_pred hhcHHHHHHHHHhHHhc--------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh--------CCCCCchh
Q psy4772 46 CNLFSDELSYIEGLISH--------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI--------APKNESPW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l--------~p~~~~aw 109 (235)
.|+|+.|+..|..||+. .|.-.......|.++..+++|. +|+..|++||.+ +|.-..++
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~-----eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYD-----EAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHH-----HHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 37899999999999999 8888888888999999999986 577777777764 33444566
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC--------C
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITM--------NPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN--------S 173 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l--------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~--------P 173 (235)
.+++.++.+.|++.||..++++|+++ .|.-...+.+.+.++...++ +++|+.++++++++. |
T Consensus 287 -~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~-~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 287 -NNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE-YEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred -HHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhhccccch
Confidence 47888999999999999999999875 34555677788888888885 999999999998754 2
Q ss_pred CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC--------CCChHHhHHHHHHHhhcCCcccccc
Q psy4772 174 KNYQVWRHRQIIVEWMGEPDEELALTAAILAQD--------AKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 174 ~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld--------p~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
.-.....++|.++...|++.+|.+++++||.+. +.......+++....-+++..+++.
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 335688899999999999999999999999864 3334445555555554444444433
No 123
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.98 E-value=7e-08 Score=87.34 Aligned_cols=117 Identities=9% Similarity=0.014 Sum_probs=91.5
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhH-HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQR-YFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~-g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
|+|+.|.....++-... +++...+.. +.+...+|+++ +|...+.++.+.+|++..+.....+.+....|++++
T Consensus 98 Gd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~-----~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 98 GDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEA-----RANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 78888886666544432 235555555 44447788764 799999999999999875543345788999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
|+..++++++.+|+++.+....+.++...| +|++++..+.++.+
T Consensus 172 Al~~l~~~~~~~P~~~~al~ll~~~~~~~g-dw~~a~~~l~~l~k 215 (398)
T PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTG-AWSSLLDILPSMAK 215 (398)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 48888865555543
No 124
>KOG0543|consensus
Probab=98.97 E-value=1.1e-08 Score=90.54 Aligned_cols=96 Identities=16% Similarity=0.111 Sum_probs=83.8
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
.+++.|+.+++.+.+|+..++++|+++|+|..|++.||.++..+++ ++.|+..|+++++++|.|-.+-..+..+-.+..
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGE-YDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999994 999999999999999999989888888888877
Q ss_pred Cch-HHHHHHHHHHHhCC
Q psy4772 191 EPD-EELALTAAILAQDA 207 (235)
Q Consensus 191 ~~~-~Al~~~~~ai~ldp 207 (235)
++. ++.+.|.+.+..-+
T Consensus 340 ~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 340 EYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 754 55778888877555
No 125
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.96 E-value=1.5e-08 Score=86.75 Aligned_cols=108 Identities=10% Similarity=0.090 Sum_probs=94.5
Q ss_pred chhhHHHHHHH-hcccccHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC---ChHHh
Q psy4772 107 SPWNYLRGAVV-NAGEKSERALALTADAITMNPAN---YTVWQYRREILKALNKDLHQELKYIGEKIKENSK---NYQVW 179 (235)
Q Consensus 107 ~aw~~~~g~il-~~~~~~~eAl~~~~~al~l~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~---n~~aw 179 (235)
..+ |..+..+ ...|++++|+..|++.+...|++ +.+++.+|.++...| ++++|+..|+++++.+|+ .+.+|
T Consensus 143 ~~~-Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g-~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTD-YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG-KKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 455 5666655 55689999999999999999999 479999999999999 599999999999998887 57899
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 180 RHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216 (235)
Q Consensus 180 ~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r 216 (235)
+.+|.++..+|++++|+..|++++...|+...+-.-+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~ 257 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQ 257 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 9999999999999999999999999999998764443
No 126
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.91 E-value=1e-07 Score=88.76 Aligned_cols=66 Identities=15% Similarity=0.232 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 145 QYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 145 ~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
++++..+..+| ++++|+++++++|...|..+..+.-+|.++.+.|++.+|.++.+.|-.+|+.|-.
T Consensus 198 ~~lAqhyd~~g-~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 198 YFLAQHYDYLG-DYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY 263 (517)
T ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH
Confidence 45555555555 3555555555555555555555555555555555555555555555555555543
No 127
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.91 E-value=8.1e-10 Score=77.98 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCC--CCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPK--NESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 90 ~Al~~~~kal~l~p~--~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
+|+..+++++..+|. +...| +.+|.++...|++++|+..+++ +..+|.+....+..|.++..+|+ +++|+..+++
T Consensus 7 ~Ai~~~~k~~~~~~~~~~~~~~-~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~-y~eAi~~l~~ 83 (84)
T PF12895_consen 7 NAIKYYEKLLELDPTNPNSAYL-YNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK-YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHHCGTHHHHHH-HHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCChhHHHH-HHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC-HHHHHHHHhc
Confidence 444444444444443 22233 3345555555555555555555 44455444444444555555552 5555555444
No 128
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.91 E-value=2.6e-08 Score=85.24 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=93.1
Q ss_pred chhHhhhHHHHH-hhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHcCCC--
Q psy4772 66 NNSAWTQRYFVI-NHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSERALALTADAITMNPA-- 139 (235)
Q Consensus 66 ~~~a~~~~g~~l-~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~-- 139 (235)
....++..+..+ ...|+|+ +|+..|.+.++..|++. .++ +.+|.++...|++++|+..|.+++...|+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~-----~Ai~af~~fl~~yP~s~~a~~A~-y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQD-----DAIVAFQNFVKKYPDSTYQPNAN-YWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHHCcCCcchHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 347788888876 4467664 79999999999999984 688 78999999999999999999999988777
Q ss_pred -ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHH
Q psy4772 140 -NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181 (235)
Q Consensus 140 -~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~ 181 (235)
.+.+++..|.++..+| +.++|+..|+++++.+|++..+---
T Consensus 215 ~~~dAl~klg~~~~~~g-~~~~A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 215 KAADAMFKVGVIMQDKG-DTAKAKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred chhHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 5889999999999999 5999999999999999998765433
No 129
>KOG2376|consensus
Probab=98.91 E-value=4.4e-08 Score=90.03 Aligned_cols=173 Identities=12% Similarity=0.155 Sum_probs=138.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc--hhhHHHHHHHhccccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES--PWNYLRGAVVNAGEKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~--aw~~~~g~il~~~~~~ 123 (235)
-+.|++|+...+++|...|+..++.+.+-.++...++|+ +|+ +.+++++.+-. ...+-++.|..++++.
T Consensus 25 ~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~-----~AL----k~ikk~~~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYE-----DAL----KLIKKNGALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHH-----HHH----HHHHhcchhhhcchhhHHHHHHHHHcccH
Confidence 468999999999999999999999999999999998885 455 56667764222 2213688999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC------------------------------C
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN------------------------------S 173 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~------------------------------P 173 (235)
++|+.+++ ..++...-..+-++.+++++++ |++|+..|+.+++-+ |
T Consensus 96 Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~-ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 96 DEALKTLK---GLDRLDDKLLELRAQVLYRLER-YDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHh---cccccchHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 99999999 6777778899999999999995 999999887774322 2
Q ss_pred -CChHHhHHHHHHHHHcCCchHHHHHHHHHH-------HhCCCC--------hHHhHHHHHHHhhcCCcccccc
Q psy4772 174 -KNYQVWRHRQIIVEWMGEPDEELALTAAIL-------AQDAKN--------YHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 174 -~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai-------~ldp~n--------~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
..+...++.+.++...|+|.+|++.+.+|+ ..+..+ ...-..++++++++|++.++-.
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 367789999999999999999999999992 222222 2345568899999999977644
No 130
>KOG0543|consensus
Probab=98.91 E-value=2.4e-08 Score=88.39 Aligned_cols=121 Identities=14% Similarity=0.131 Sum_probs=105.8
Q ss_pred hcHHHHHHHHHhHHhcCCCc---------------hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhH
Q psy4772 47 NLFSDELSYIEGLISHDVRN---------------NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNY 111 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~---------------~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~ 111 (235)
|+|..|...|++|++.-+.. ...+.|++.|+..+++|. +|++.|+++|.++|+|..|. |
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~-----~Ai~~c~kvLe~~~~N~KAL-y 295 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYK-----EAIESCNKVLELDPNNVKAL-Y 295 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHH-----HHHHHHHHHHhcCCCchhHH-H
Confidence 57899999999988874422 356889999999998875 79999999999999999999 8
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENS 173 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P 173 (235)
++|.++..+|.++.|...|+++++++|.|-.+-..+..+-.+..+..+.+.+.|.+.+..-+
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999988888887656677888888887655
No 131
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=1.2e-07 Score=81.95 Aligned_cols=180 Identities=10% Similarity=0.065 Sum_probs=133.7
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH---------------------------------HHHHHHHHH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP---------------------------------EVIQREIDY 94 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e---------------------------------~~~~~Al~~ 94 (235)
..++|+..|-..++.+|+..+++..+|.++.+.|+.+. +-+++|.+.
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 45899999999999999999999999999999997542 245666666
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH---HHHHHHHHHHHhh-HhHHHHHHHHHHHHH
Q psy4772 95 CRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYT---VWQYRREILKALN-KDLHQELKYIGEKIK 170 (235)
Q Consensus 95 ~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~---aw~~r~~~l~~l~-~~~eeal~~~~~al~ 170 (235)
|.........-..|.. .+-.|++.-..+++|++.-++..++.|+... |.++--.+...+. .+++.|+..+.+|++
T Consensus 130 f~~L~de~efa~~Alq-qLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 130 FNQLVDEGEFAEGALQ-QLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHhcchhhhHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 6665544333344553 4557788888889999988888888887765 3333333333221 247889999999999
Q ss_pred hCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhH-HHHHHHhhcCCccc
Q psy4772 171 ENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQ-HRQWVINLLDDDDR 228 (235)
Q Consensus 171 ~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~-~r~~~l~~l~~~~~ 228 (235)
-||++.-|=..+|.+....|+|+.|++.++++++.||...+--. -+..++..+|+-.+
T Consensus 209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999999999999999998765322 23333455555433
No 132
>PRK15331 chaperone protein SicA; Provisional
Probab=98.88 E-value=5e-08 Score=77.04 Aligned_cols=102 Identities=11% Similarity=-0.025 Sum_probs=53.6
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
+.++.-+..+..|.=++..|+++ +|...|.-+...+|-++.-| ..+|.|++.++.|++|+.+|..+..++++++
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~-----eA~~~F~~L~~~d~~n~~Y~-~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLD-----EAETFFRFLCIYDFYNPDYT-MGLAAVCQLKKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCcCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 33444445555555555555543 35555555555555555555 4555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
...++.|.|+..+|+ .+.|+.+++.++.
T Consensus 106 ~p~f~agqC~l~l~~-~~~A~~~f~~a~~ 133 (165)
T PRK15331 106 RPVFFTGQCQLLMRK-AAKARQCFELVNE 133 (165)
T ss_pred CccchHHHHHHHhCC-HHHHHHHHHHHHh
Confidence 555555555555552 4555555555555
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.88 E-value=1.7e-07 Score=77.15 Aligned_cols=155 Identities=10% Similarity=-0.028 Sum_probs=85.6
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc---hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH-
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES---PWNYLRGAVVNAGEKSERALALTADAITMNPANYT- 142 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~---aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~- 142 (235)
+..++..|...+..|+|. +|+..|.+++...|..+. ++ +.+|.++...|++++|+..++..++..|+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~-----~Ai~~f~~l~~~~P~s~~a~~A~-l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~ 78 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYE-----EAIKLFEKLIDRYPNSPYAPQAQ-LMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA 78 (203)
T ss_dssp HHHHHHHHHHHHHCT-HH-----HHHHHHHHHHHH-TTSTTHHHHH-HHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH
T ss_pred HHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHCCCChHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 445556666666665543 466666666666555442 34 34555566666666666666666666665543
Q ss_pred --HHHHHHHHHHHhhH----------hHHHHHHHHHHHHHhCCCChHHh-----------------HHHHHHHHHcCCch
Q psy4772 143 --VWQYRREILKALNK----------DLHQELKYIGEKIKENSKNYQVW-----------------RHRQIIVEWMGEPD 193 (235)
Q Consensus 143 --aw~~r~~~l~~l~~----------~~eeal~~~~~al~~~P~n~~aw-----------------~~r~~~l~~l~~~~ 193 (235)
|++.+|.++..+.+ ...+|+..++.+++..|++..+- ...|..+.+.|.+.
T Consensus 79 ~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 79 DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 55555655544431 12456666666666666655322 23456666777788
Q ss_pred HHHHHHHHHHHhCCCChHH---hHHHHHHHhhcCCcc
Q psy4772 194 EELALTAAILAQDAKNYHA---WQHRQWVINLLDDDD 227 (235)
Q Consensus 194 ~Al~~~~~ai~ldp~n~~a---w~~r~~~l~~l~~~~ 227 (235)
.|+..++.+|..-|+...+ +..+......||...
T Consensus 159 aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 8888888888888877654 333444445666554
No 134
>PRK15331 chaperone protein SicA; Provisional
Probab=98.86 E-value=2.8e-08 Score=78.47 Aligned_cols=100 Identities=5% Similarity=-0.089 Sum_probs=69.6
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
|..|.-+...|++++|...|.-+...+|-++.-|..+|-|+..+++ +++|+.+|..+..+++++|...++.|.++..+|
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 4555666666777777777777777777777777777777777763 777777777777777777777777777777777
Q ss_pred CchHHHHHHHHHHHhCCCChHH
Q psy4772 191 EPDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 191 ~~~~Al~~~~~ai~ldp~n~~a 212 (235)
+...|+.+|..++. .|.+...
T Consensus 120 ~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 120 KAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred CHHHHHHHHHHHHh-CcchHHH
Confidence 77777777777776 4554443
No 135
>KOG4234|consensus
Probab=98.86 E-value=2.6e-08 Score=80.82 Aligned_cols=105 Identities=13% Similarity=0.153 Sum_probs=78.5
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc----hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 70 WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES----PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 70 ~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~----aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
+-.-|.-++..|.|. +|...|..||.+-|..++ ....++|.++.+++..+.|+..+.++|+++|.+..|+-
T Consensus 98 lK~EGN~~F~ngdye-----eA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYE-----EANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHhhhcccHH-----HHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 334455566666554 677777777777777764 11135677777888888888888888888888888888
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhH
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNYQVWR 180 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~ 180 (235)
.|+.+|.++.+ +++|+..|.++++++|++-++--
T Consensus 173 RRAeayek~ek-~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 173 RRAEAYEKMEK-YEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HHHHHHHhhhh-HHHHHHHHHHHHHhCcchHHHHH
Confidence 88888888874 88888888888888888765543
No 136
>KOG4648|consensus
Probab=98.85 E-value=1e-09 Score=95.27 Aligned_cols=172 Identities=8% Similarity=0.016 Sum_probs=122.5
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|.|++|+.+|.+++.+.|.|+..+.+|+.++.++++|. -|..+|..|+.+|-....|+ .+||.+...+|..+||
T Consensus 111 gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA-----~AE~DC~~AiaLd~~Y~KAY-SRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 111 GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFA-----QAEEDCEAAIALDKLYVKAY-SRRMQARESLGNNMEA 184 (536)
T ss_pred cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHH-----HHHHhHHHHHHhhHHHHHHH-HHHHHHHHHHhhHHHH
Confidence 67899999999999999999999999999999999886 57789999999999999999 5899999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhH--------------------------------------hHHHHHHHHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNK--------------------------------------DLHQELKYIGEK 168 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~--------------------------------------~~eeal~~~~~a 168 (235)
-+.++.+|++.|++... ..++..+.. .++.++.|+-+-
T Consensus 185 KkD~E~vL~LEP~~~EL----kK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~ 260 (536)
T KOG4648|consen 185 KKDCETVLALEPKNIEL----KKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSP 260 (536)
T ss_pred HHhHHHHHhhCcccHHH----HHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeecc
Confidence 99999999999997543 333333321 112222222222
Q ss_pred HHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 169 IKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 169 l~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
+.-+-.|...-.+ ...+.+..++++++..+.+++.++|....+...++.+-.++|.-.++
T Consensus 261 ~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~ 320 (536)
T KOG4648|consen 261 RATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEV 320 (536)
T ss_pred ccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhc
Confidence 2222222222222 33444455566777777777778877777777766666665554433
No 137
>KOG4648|consensus
Probab=98.84 E-value=1.1e-08 Score=89.04 Aligned_cols=101 Identities=20% Similarity=0.115 Sum_probs=90.4
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
-+|.-+.+.|+|+||++||.+++..+|-++-.+.+|+.+|.++++ |..|-..|..|+.+|-....||..|+.+-..+|+
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~-FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS-FAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH-HHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 578888899999999999999999999999999999999999985 8999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCChHHh
Q psy4772 192 PDEELALTAAILAQDAKNYHAW 213 (235)
Q Consensus 192 ~~~Al~~~~~ai~ldp~n~~aw 213 (235)
..+|.+.++.++++.|++...-
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHH
Confidence 9999999999999999976643
No 138
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.84 E-value=4e-07 Score=77.18 Aligned_cols=146 Identities=7% Similarity=0.039 Sum_probs=101.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHh---hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc---hhhHHHHHHHhcc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAW---TQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES---PWNYLRGAVVNAG 120 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~---~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~---aw~~~~g~il~~~ 120 (235)
|+|++|+..|++++...|..+.+- +.+|.++...++|. +|+..+++.++++|+++. ++ +.+|.+....
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~-----~A~~~~e~fi~~~P~~~~~~~a~-Y~~g~~~~~~ 119 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLP-----LAQAAIDRFIRLNPTHPNIDYVL-YMRGLTNMAL 119 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHhCcCCCchHHHH-HHHHHhhhhc
Confidence 789999999999999999887655 88899999998875 799999999999999985 45 6677764333
Q ss_pred c------------------ccHHHHHHHHHHHHcCCCChHHHHHHH---HH--------------HHHhhHhHHHHHHHH
Q psy4772 121 E------------------KSERALALTADAITMNPANYTVWQYRR---EI--------------LKALNKDLHQELKYI 165 (235)
Q Consensus 121 ~------------------~~~eAl~~~~~al~l~P~~~~aw~~r~---~~--------------l~~l~~~~eeal~~~ 165 (235)
+ ...+|+..+++.++..|++..+---+. .+ |.+.| .+..|+.-+
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~-~y~AA~~r~ 198 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG-AYVAVVNRV 198 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-chHHHHHHH
Confidence 2 136788999999999998876543322 11 22222 245566666
Q ss_pred HHHHHhCCCCh---HHhHHHHHHHHHcCCchHHHHHH
Q psy4772 166 GEKIKENSKNY---QVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 166 ~~al~~~P~n~---~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
+.+++..|... .+.+.++.++..+|..++|.+..
T Consensus 199 ~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 199 EQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 66666555443 35555555555666655555443
No 139
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.83 E-value=7.3e-07 Score=69.86 Aligned_cols=169 Identities=14% Similarity=0.176 Sum_probs=131.0
Q ss_pred hhcHHHHHHHHHhHHh--cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH-HHhcccc
Q psy4772 46 CNLFSDELSYIEGLIS--HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGA-VVNAGEK 122 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~--~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~-il~~~~~ 122 (235)
.+.+..++..+..++. ..+.....+...|.+....+.+ .+++..+.+++...+.....+. ..+. ++...|+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 145 (291)
T COG0457 72 LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY-----EEALELLEKALALDPDPDLAEA-LLALGALYELGD 145 (291)
T ss_pred cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHcCCCCcchHHH-HHHHHHHHHcCC
Confidence 3567788888888887 7888888888888888877764 3688888888888887766553 4555 7788888
Q ss_pred cHHHHHHHHHHHHcCC---CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC-ChHHhHHHHHHHHHcCCchHHHHH
Q psy4772 123 SERALALTADAITMNP---ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK-NYQVWRHRQIIVEWMGEPDEELAL 198 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P---~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~-n~~aw~~r~~~l~~l~~~~~Al~~ 198 (235)
+++|+..+.+++..+| ........++..+...+ .+++++..+.+++...|. ...++..++..+...+.+..++..
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 224 (291)
T COG0457 146 YEEALELYEKALELDPELNELAEALLALGALLEALG-RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY 224 (291)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc-CHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHH
Confidence 8888888888888777 45566666666666666 478888888888888888 688888888888888888888888
Q ss_pred HHHHHHhCCCChHHhHHHHHHHh
Q psy4772 199 TAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 199 ~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
+..++...|.....+..++..+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 225 YEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred HHHHHhhCcccHHHHhhHHHHHH
Confidence 88888888887777777776666
No 140
>KOG1127|consensus
Probab=98.82 E-value=4e-08 Score=94.65 Aligned_cols=167 Identities=13% Similarity=0.090 Sum_probs=146.4
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC--chhhHHHHHHHhcccccHH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE--SPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~--~aw~~~~g~il~~~~~~~e 125 (235)
+...|..+|++|.++||.++++|.-.+..+..... ++.|...+..+-+..|... ..| .++|..+.+.+..-.
T Consensus 507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~-----we~a~~I~l~~~qka~a~~~k~nW-~~rG~yyLea~n~h~ 580 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEEST-----WEEAFEICLRAAQKAPAFACKENW-VQRGPYYLEAHNLHG 580 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcccc-----HHHHHHHHHHHhhhchHHHHHhhh-hhccccccCccchhh
Confidence 67899999999999999999999999999887654 4567788888888888766 467 468888889999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..|+.+++.+|+++.+|...|.+|-+-|+ +.-|++.+.++..++|.+.-+-+..+......|+|.++++.+...|..
T Consensus 581 aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-y~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 581 AVCEFQSALRTDPKDYNLWLGLGEAYPESGR-YSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHhcCc-eehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999995 999999999999999999999999999999999999999999998887
Q ss_pred CCCChHHhHHHHHHHh
Q psy4772 206 DAKNYHAWQHRQWVIN 221 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~ 221 (235)
-..-..+...++-++.
T Consensus 660 ~s~e~~~q~gLaE~~i 675 (1238)
T KOG1127|consen 660 FSLERTGQNGLAESVI 675 (1238)
T ss_pred HHHHHHhhhhHHHHHH
Confidence 7776666666555543
No 141
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.81 E-value=3.3e-08 Score=67.42 Aligned_cols=65 Identities=17% Similarity=0.298 Sum_probs=37.8
Q ss_pred HHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhH
Q psy4772 115 AVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWR 180 (235)
Q Consensus 115 ~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~ 180 (235)
.++...+++++|++++++++.++|.++.+|..+|.++..+|+ +.+|+..++++++..|++..+-.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR-YEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc-HHHHHHHHHHHHHHCCCcHHHHH
Confidence 344555556666666666666666666666666666666653 56666666666666665554443
No 142
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.80 E-value=8.4e-08 Score=76.63 Aligned_cols=88 Identities=13% Similarity=0.139 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc----------ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH-
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE----------KSERALALTADAITMNPANYTVWQYRREILKALNK- 156 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~----------~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~- 156 (235)
++.|.+.+......||.++.++ ++.|.++..+. .+++|+.-+++||.++|+...|+++.|.++..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL-~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNL-TNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHH-HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHH-HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 5667788888888888888888 47787776642 35777788888888888888888888888887763
Q ss_pred ---------hHHHHHHHHHHHHHhCCCCh
Q psy4772 157 ---------DLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 157 ---------~~eeal~~~~~al~~~P~n~ 176 (235)
.|++|..+|++|...+|.|.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 36667777777777777764
No 143
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.79 E-value=2.5e-08 Score=90.00 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=56.0
Q ss_pred hCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHH---HHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 101 IAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTV---WQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 101 l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~a---w~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
-+|+++.+| +++|.++..+|++++|+.+|+++|+++|++..+ |++++-+|..+| ++++|+.+++++|++.
T Consensus 70 ~dP~~a~a~-~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG-r~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDA-VNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE-EGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhc
Confidence 578888888 478888888888888888888888888888754 888888888888 4788888888888873
No 144
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.78 E-value=3.9e-08 Score=88.73 Aligned_cols=70 Identities=10% Similarity=0.163 Sum_probs=64.7
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCch---hhHHHHHHHhcccccHHHHHHHHHHHHcC
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESP---WNYLRGAVVNAGEKSERALALTADAITMN 137 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~a---w~~~~g~il~~~~~~~eAl~~~~~al~l~ 137 (235)
.+|+++.+|+++|.++..+|+|+ +|+..|+++|+++|++..+ | +++|.++..+|+.++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGrye-----EAIa~f~rALeL~Pd~aeA~~A~-yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVK-----DALAQFETALELNPNPDEAQAAY-YNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhhCCCchHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 69999999999999999999885 7999999999999999965 8 789999999999999999999999983
No 145
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.78 E-value=1e-07 Score=76.12 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=78.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH-----HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP-----EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG 120 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e-----~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~ 120 (235)
+-.|+.|.+.++.....||.+++++++-|.+|..+.++.. ..+++|+.-|+.||.++|+...+. +.+|.++...
T Consensus 4 l~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAl-w~lGnA~ts~ 82 (186)
T PF06552_consen 4 LLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDAL-WCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHH-HHHHHHHHHH
Confidence 3468999999999999999999999999999999988743 578999999999999999999998 5799999875
Q ss_pred cc-----------cHHHHHHHHHHHHcCCCChHH
Q psy4772 121 EK-----------SERALALTADAITMNPANYTV 143 (235)
Q Consensus 121 ~~-----------~~eAl~~~~~al~l~P~~~~a 143 (235)
+. +++|..+|++|...+|++...
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 43 688999999999999998543
No 146
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.77 E-value=2e-07 Score=70.48 Aligned_cols=93 Identities=18% Similarity=0.207 Sum_probs=60.4
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC---ChHHhHHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPAN---YTVWQYRREILKALNKDLHQELKYIGEKIKENSK---NYQVWRHRQI 184 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~---n~~aw~~r~~ 184 (235)
|.+++++...|+.++|+..|++++...+.. ..++..++..+..+|+ +++|+..+++++..+|+ +.......+.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~-~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGR-YDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 556666666666666666666666654333 3466666667777773 67777777777766666 6666666666
Q ss_pred HHHHcCCchHHHHHHHHHHH
Q psy4772 185 IVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 185 ~l~~l~~~~~Al~~~~~ai~ 204 (235)
++...|++++|+..+-.++.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 66777777776666655554
No 147
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.76 E-value=4.7e-08 Score=66.65 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=62.4
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 148 REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 148 ~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
+.++.+.+ ++++|+.+++++++.+|.++.+|..+|.++..+|++.+|+..++++++..|++..+-..+.
T Consensus 2 ~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQE-DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 35677777 5999999999999999999999999999999999999999999999999999988755443
No 148
>KOG4555|consensus
Probab=98.76 E-value=1.3e-07 Score=72.00 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=85.5
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh----HHhHHHHHHHH
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY----QVWRHRQIIVE 187 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~----~aw~~r~~~l~ 187 (235)
..|..+.+.|+.++||+.|.++|.+.|+.+.++++|+..+.-.| +-++|++.+++++++.-.-. +++..||.++.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~-~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQG-DDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcC-ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 47888999999999999999999999999999999999998777 47999999999999765433 58899999999
Q ss_pred HcCCchHHHHHHHHHHHhCCCCh
Q psy4772 188 WMGEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 188 ~l~~~~~Al~~~~~ai~ldp~n~ 210 (235)
.+|+-+.|...|+.|-.+-..++
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCHHH
Confidence 99999999999999887776654
No 149
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.75 E-value=1.5e-06 Score=68.14 Aligned_cols=157 Identities=15% Similarity=0.238 Sum_probs=137.7
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHhCCC---CCchhhHHHHHHHhcc
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYF-VINHTTQFTPEVIQREIDYCRDKIQIAPK---NESPWNYLRGAVVNAG 120 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~-~l~~~~~~~e~~~~~Al~~~~kal~l~p~---~~~aw~~~~g~il~~~ 120 (235)
..+.+..++..+..++...+.....+...+. ++...|+++ +|+..+.+++..+|. ..... ...+..+...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 180 (291)
T COG0457 107 ALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYE-----EALELYEKALELDPELNELAEAL-LALGALLEAL 180 (291)
T ss_pred HHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhcCCCccchHHHH-HHhhhHHHHh
Confidence 3567889999999999999999888888887 888888875 799999999998873 33333 4456667778
Q ss_pred cccHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHH
Q psy4772 121 EKSERALALTADAITMNPA-NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 121 ~~~~eAl~~~~~al~l~P~-~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
+.+++++..+.+++...|. ...++..++.++...+ .++.++..+.+++...|.....+..++..+...+.+.++...+
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (291)
T COG0457 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG-KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEAL 259 (291)
T ss_pred cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc-cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHH
Confidence 8999999999999999999 7999999999999998 4899999999999999998889999999999777799999999
Q ss_pred HHHHHhCCC
Q psy4772 200 AAILAQDAK 208 (235)
Q Consensus 200 ~~ai~ldp~ 208 (235)
.+++..+|.
T Consensus 260 ~~~~~~~~~ 268 (291)
T COG0457 260 EKALELDPD 268 (291)
T ss_pred HHHHHhCcc
Confidence 999999998
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.74 E-value=2.5e-07 Score=71.96 Aligned_cols=111 Identities=14% Similarity=0.007 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhCCCC---CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHhhHhHHHHHH
Q psy4772 90 REIDYCRDKIQIAPKN---ESPWNYLRGAVVNAGEKSERALALTADAITMNPAN---YTVWQYRREILKALNKDLHQELK 163 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~---~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~---~~aw~~r~~~l~~l~~~~eeal~ 163 (235)
++...+.+++..+|+. ..+. +.+|.++...|++++|+..++.++...|+. ..+...++.++...|+ +++|+.
T Consensus 29 ~~~~~~~~l~~~~~~s~ya~~A~-l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~-~d~Al~ 106 (145)
T PF09976_consen 29 KAEAAAEQLAKDYPSSPYAALAA-LQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ-YDEALA 106 (145)
T ss_pred HHHHHHHHHHHHCCCChHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 4555678888888888 3455 457788888899999999999999877665 3477778888888884 899999
Q ss_pred HHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 164 YIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 164 ~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
.++. +.-.+-.+.++..+|.++...|++++|+..|++||
T Consensus 107 ~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 107 TLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8866 45556667788889999999999999999998875
No 151
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.70 E-value=1.1e-06 Score=81.80 Aligned_cols=161 Identities=15% Similarity=0.167 Sum_probs=125.5
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH---------------------------------------
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP--------------------------------------- 85 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e--------------------------------------- 85 (235)
.+|++++|...|...|..||+|..-+..+..++.......+
T Consensus 50 kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~ 129 (517)
T PF12569_consen 50 KLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKER 129 (517)
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHH
Confidence 35889999999999999999999988888888732221000
Q ss_pred ------------------------------HHHHHHHHHHHHHHHhC----------CCCCch--hh-HHHHHHHhcccc
Q psy4772 86 ------------------------------EVIQREIDYCRDKIQIA----------PKNESP--WN-YLRGAVVNAGEK 122 (235)
Q Consensus 86 ------------------------------~~~~~Al~~~~kal~l~----------p~~~~a--w~-~~~g~il~~~~~ 122 (235)
..+++-+..|...++-+ ++.+++ |. +.++..+...|+
T Consensus 130 ~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~ 209 (517)
T PF12569_consen 130 LDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGD 209 (517)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCC
Confidence 12333333333333222 122322 42 346777888999
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
+++|+.+.+++|+..|..+..+..+|.|+.+.| ++.+|..+++.+-.+|+.+--.-..-+..+.+.|+.++|.+.+..-
T Consensus 210 ~~~Al~~Id~aI~htPt~~ely~~KarilKh~G-~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 210 YEKALEYIDKAIEHTPTLVELYMTKARILKHAG-DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999999 5999999999999999999888888889999999999999987776
Q ss_pred HHhC
Q psy4772 203 LAQD 206 (235)
Q Consensus 203 i~ld 206 (235)
..-+
T Consensus 289 tr~~ 292 (517)
T PF12569_consen 289 TRED 292 (517)
T ss_pred cCCC
Confidence 6655
No 152
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.69 E-value=5.9e-08 Score=65.19 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=32.7
Q ss_pred ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHH
Q psy4772 120 GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~ 181 (235)
.|++++|+..+++++..+|++..++..++.++...|+ +++|...+++++..+|+++..+.-
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ-YDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT--HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3455555555555555555555555555555555552 555555555555555555444433
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.67 E-value=2.5e-07 Score=71.93 Aligned_cols=116 Identities=12% Similarity=-0.006 Sum_probs=99.5
Q ss_pred hhcHHHHHHHHHhHHhcCCCc---hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhc
Q psy4772 46 CNLFSDELSYIEGLISHDVRN---NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNA 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~---~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~ 119 (235)
-++...+...++..++-.|+. ..+...+|.+++..|+++ +|+..|++++...|+.. .++ ++++.++..
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~-----~A~~~l~~~~~~~~d~~l~~~a~-l~LA~~~~~ 97 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYD-----EAKAALEKALANAPDPELKPLAR-LRLARILLQ 97 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhhCCCHHHHHHHH-HHHHHHHHH
Confidence 356788888899999999999 678888999999999875 79999999999886663 366 678999999
Q ss_pred ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy4772 120 GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKI 169 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al 169 (235)
.|++++|+..++. +.-.+-.+.++..+|.|+...| ++++|+..|+++|
T Consensus 98 ~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g-~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 QGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQG-DYDEARAAYQKAL 145 (145)
T ss_pred cCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCC-CHHHHHHHHHHhC
Confidence 9999999999976 4556667778889999999999 4999999999875
No 154
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.67 E-value=4.3e-07 Score=81.82 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
++.|++.+++..+.+|+ ++ ..++.++...++..+|++...++|..+|.++..+...+..+...++ ++.|+...++
T Consensus 185 ~~~ai~lle~L~~~~pe---v~-~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~-~~lAL~iAk~ 259 (395)
T PF09295_consen 185 YDEAIELLEKLRERDPE---VA-VLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK-YELALEIAKK 259 (395)
T ss_pred HHHHHHHHHHHHhcCCc---HH-HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHH
Confidence 46899999999998876 44 4566777778888999999999999999999999999999999984 8999999999
Q ss_pred HHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 168 KIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 168 al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
+++..|.++.+|+.++.++..+|++++|+-.++..
T Consensus 260 av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 260 AVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999766543
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.67 E-value=2.5e-06 Score=72.26 Aligned_cols=160 Identities=10% Similarity=-0.056 Sum_probs=126.9
Q ss_pred CchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhh--HHHHHHHhcccccHHHHHHHHHHHHcCCCChH
Q psy4772 65 RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWN--YLRGAVVNAGEKSERALALTADAITMNPANYT 142 (235)
Q Consensus 65 ~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~--~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~ 142 (235)
..+..++..|.-....|+|+ +|+..|.+++...|..+.+-. +.+|.++.+.+++++|+..+++.++++|+++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~-----~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWK-----QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 36777899999999999875 799999999999999876521 35788999999999999999999999888754
Q ss_pred ---HHHHHHHHHHHhhH-----------------hHHHHHHHHHHHHHhCCCChHHh-----------------HHHHHH
Q psy4772 143 ---VWQYRREILKALNK-----------------DLHQELKYIGEKIKENSKNYQVW-----------------RHRQII 185 (235)
Q Consensus 143 ---aw~~r~~~l~~l~~-----------------~~eeal~~~~~al~~~P~n~~aw-----------------~~r~~~ 185 (235)
|++.+|.+...+++ ...+|+..++++++..|++.-+- .+.+..
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEY 184 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888887655531 13578999999999999886421 234566
Q ss_pred HHHcCCchHHHHHHHHHHHhCCCCh---HHhHHHHHHHhhcCCcccc
Q psy4772 186 VEWMGEPDEELALTAAILAQDAKNY---HAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 186 l~~l~~~~~Al~~~~~ai~ldp~n~---~aw~~r~~~l~~l~~~~~~ 229 (235)
+.+.|.+..|+.-++.+++.-|+-. .+.+.++.....+|..+.+
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a 231 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQA 231 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHH
Confidence 7778889999999999999888765 4556666667788877654
No 156
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.67 E-value=2.3e-07 Score=70.12 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=85.3
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHcCCC---C
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSERALALTADAITMNPA---N 140 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~---~ 140 (235)
+.+++++++++..+|+.+ +|+..|.+++...+... .++ ..+|..+..+|++++|+..+++++...|+ +
T Consensus 1 ~~~~~~~A~a~d~~G~~~-----~Ai~~Y~~Al~~gL~~~~~~~a~-i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~ 74 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREE-----EAIPLYRRALAAGLSGADRRRAL-IQLASTLRNLGRYDEALALLEEALEEFPDDELN 74 (120)
T ss_pred CchHHHHHHHHHhcCCHH-----HHHHHHHHHHHcCCCchHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc
Confidence 468899999999999854 79999999999866553 477 57899999999999999999999999999 8
Q ss_pred hHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 141 YTVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 141 ~~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
..+....+.++.++|+ .++|+..+-.++.
T Consensus 75 ~~l~~f~Al~L~~~gr-~~eAl~~~l~~la 103 (120)
T PF12688_consen 75 AALRVFLALALYNLGR-PKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 8899999999999995 8999998888775
No 157
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.65 E-value=3.7e-07 Score=82.29 Aligned_cols=111 Identities=17% Similarity=0.263 Sum_probs=98.2
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
+.++.|+..+++..+.+|+ +...++.++...++- .+|++..+++|+.+|.++..+. ..+..+...++++.|
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E-----~~AI~ll~~aL~~~p~d~~LL~-~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEE-----VEAIRLLNEALKENPQDSELLN-LQAEFLLSKKKYELA 253 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcH-----HHHHHHHHHHHHhCCCCHHHHH-HHHHHHHhcCCHHHH
Confidence 5789999999999999976 555677777766542 3899999999999999999994 688899999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
+.+.++++.+.|.+...|+.++.+|..+| +++.|+-.+..
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~-d~e~ALlaLNs 293 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLG-DFENALLALNS 293 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcC-CHHHHHHHHhc
Confidence 99999999999999999999999999999 59999977664
No 158
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.65 E-value=1.3e-06 Score=71.82 Aligned_cols=143 Identities=10% Similarity=0.080 Sum_probs=110.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCc---hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc---hhhHHHHHHHhc
Q psy4772 46 CNLFSDELSYIEGLISHDVRN---NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES---PWNYLRGAVVNA 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~---~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~---aw~~~~g~il~~ 119 (235)
.|+|.+|+..|++++...|.. +.+.+.+|.++...|++. +|+..++..++..|+++. ++ +.+|.+...
T Consensus 18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~-----~A~~~~~~fi~~yP~~~~~~~A~-Y~~g~~~~~ 91 (203)
T PF13525_consen 18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYE-----EAIAAYERFIKLYPNSPKADYAL-YMLGLSYYK 91 (203)
T ss_dssp CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HH-----HHHHHHHHHHHH-TT-TTHHHHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHCCCCcchhhHH-HHHHHHHHH
Confidence 489999999999999998875 689999999999999875 799999999999999996 66 678887654
Q ss_pred c-----------cccHHHHHHHHHHHHcCCCChHHHHHH-----------------HHHHHHhhHhHHHHHHHHHHHHHh
Q psy4772 120 G-----------EKSERALALTADAITMNPANYTVWQYR-----------------REILKALNKDLHQELKYIGEKIKE 171 (235)
Q Consensus 120 ~-----------~~~~eAl~~~~~al~l~P~~~~aw~~r-----------------~~~l~~l~~~~eeal~~~~~al~~ 171 (235)
. +...+|+..|+..+...|++..+---+ |..+.+.| .+..|+.-++.+|+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~-~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG-KYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHH
Confidence 3 235799999999999999998875432 22233334 488999999999999
Q ss_pred CCCChH---HhHHHHHHHHHcCCchHH
Q psy4772 172 NSKNYQ---VWRHRQIIVEWMGEPDEE 195 (235)
Q Consensus 172 ~P~n~~---aw~~r~~~l~~l~~~~~A 195 (235)
.|+... ++..++.++.++|..+.|
T Consensus 171 yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 171 YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 999876 677788888888887733
No 159
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.62 E-value=1.7e-07 Score=62.96 Aligned_cols=65 Identities=18% Similarity=0.127 Sum_probs=58.0
Q ss_pred HHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 152 ~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
...| ++++|+..+++++..+|+|..+++.++.++...|++++|...+++++..+|+++..+.-++
T Consensus 2 l~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQG-DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTT-HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhcc-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3456 4999999999999999999999999999999999999999999999999999977665544
No 160
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.62 E-value=1.1e-07 Score=82.58 Aligned_cols=170 Identities=8% Similarity=0.016 Sum_probs=105.9
Q ss_pred HHHHHHHHHhHHhcCC--CchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 49 FSDELSYIEGLISHDV--RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P--~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
-+.++.-++..+.-.. .++......|.++...|++ ++|+..+.+. .+.++. ...-.|+..+++.+.|
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~-----~~AL~~l~~~-----~~lE~~-al~Vqi~L~~~R~dlA 150 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDY-----EEALKLLHKG-----GSLELL-ALAVQILLKMNRPDLA 150 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH-----HHHHCCCTTT-----TCHHHH-HHHHHHHHHTT-HHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH-----HHHHHHHHcc-----CcccHH-HHHHHHHHHcCCHHHH
Confidence 3455555544443322 2444445555666655544 3455544432 233333 1233566677788888
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNK-DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~-~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
.+.++.+-+.+.+..-....-+|+....|. .+.+|..+|+++....|.++...+.++.+...+|++++|.+.+..|+..
T Consensus 151 ~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 151 EKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 888887777777776666666666666552 3677888888877777777788888888888888888888888888888
Q ss_pred CCCChHHhHHHHHHHhhcCCcccc
Q psy4772 206 DAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
+|+++.++.|+..+-.++|+.++.
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCChhH
Confidence 888888888877777777777443
No 161
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.58 E-value=2.9e-07 Score=79.98 Aligned_cols=155 Identities=8% Similarity=-0.000 Sum_probs=120.3
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc--ccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG--EKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~--~~~ 123 (235)
.|++++|+..+.+. ++.++...+-.++..++|.+ -|...++++-+.+.+..-.- ..-+++.... +.+
T Consensus 115 ~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~d-----lA~k~l~~~~~~~eD~~l~q-La~awv~l~~g~e~~ 183 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPD-----LAEKELKNMQQIDEDSILTQ-LAEAWVNLATGGEKY 183 (290)
T ss_dssp CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HH-----HHHHHHHHHHCCSCCHHHHH-HHHHHHHHHHTTTCC
T ss_pred cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHH-----HHHHHHHHHHhcCCcHHHHH-HHHHHHHHHhCchhH
Confidence 47889999777654 67788878888888888875 57777777777765544322 3344444333 469
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCch-HHHHHHHHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPD-EELALTAAI 202 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~-~Al~~~~~a 202 (235)
++|...|+......|..+..++.++.+...+| +|++|...+++++..+|+++.+..+++.+...+|+.. .+-+++...
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~-~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG-HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT--HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 99999999999999999999999999999999 4999999999999999999999999999999999984 455678888
Q ss_pred HHhCCCChHH
Q psy4772 203 LAQDAKNYHA 212 (235)
Q Consensus 203 i~ldp~n~~a 212 (235)
-..+|.++..
T Consensus 263 ~~~~p~h~~~ 272 (290)
T PF04733_consen 263 KQSNPNHPLV 272 (290)
T ss_dssp HHHTTTSHHH
T ss_pred HHhCCCChHH
Confidence 8899998754
No 162
>KOG4642|consensus
Probab=98.57 E-value=2.5e-07 Score=76.86 Aligned_cols=92 Identities=11% Similarity=0.040 Sum_probs=81.2
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCc
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEP 192 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~ 192 (235)
.|..+....+|.+|+.+|.++|.++|..+..|.+|+.|+.+++ +|+.....+.++++++|+...+.+.+|..+.....+
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~-~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLK-HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhh-hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 4566677778899999999999999999999999999999988 599999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh
Q psy4772 193 DEELALTAAILAQ 205 (235)
Q Consensus 193 ~~Al~~~~~ai~l 205 (235)
.+++..+.+|..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999998543
No 163
>PLN03077 Protein ECB2; Provisional
Probab=98.57 E-value=3.1e-06 Score=83.66 Aligned_cols=169 Identities=8% Similarity=0.051 Sum_probs=139.2
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH--hCCCCCchhhHHHHHHHhccccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ--IAPKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~--l~p~~~~aw~~~~g~il~~~~~~ 123 (235)
.|++++|...|+.. +.+...|..+...+...|+.+ +|++.|++..+ ..|+..+-. ..+ ..+...|..
T Consensus 537 ~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~-----~A~~lf~~M~~~g~~Pd~~T~~-~ll-~a~~~~g~v 605 (857)
T PLN03077 537 CGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGS-----MAVELFNRMVESGVNPDEVTFI-SLL-CACSRSGMV 605 (857)
T ss_pred cCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCCCCcccHH-HHH-HHHhhcChH
Confidence 57889999999886 778999999999999999864 79999998877 567777654 233 567778999
Q ss_pred HHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 124 ERALALTADAITMNPA--NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~--~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
++|+..|+...+..+- +...|.....++.+.| .+++|.+++++. ...|+ ...|..+..++...++.+.+....++
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G-~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG-KLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC-CHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 9999999999854332 3467788889999999 499999999885 34554 77899988888889999999999999
Q ss_pred HHHhCCCChHHhHHHHHHHhhcCCccc
Q psy4772 202 ILAQDAKNYHAWQHRQWVINLLDDDDR 228 (235)
Q Consensus 202 ai~ldp~n~~aw~~r~~~l~~l~~~~~ 228 (235)
+++++|++...+..+++++...|+-.+
T Consensus 683 l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 683 IFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 999999999999999999877777544
No 164
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=5.1e-07 Score=74.33 Aligned_cols=104 Identities=9% Similarity=0.043 Sum_probs=66.0
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
.+..++.||..+-++|-.. =|--+|.++|.+.|+-+.+.| .+|.-+...|.++-|++.|+.+++++|.+-.|..
T Consensus 64 RA~l~fERGvlYDSlGL~~-----LAR~DftQaLai~P~m~~vfN-yLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l 137 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRA-----LARNDFSQALAIRPDMPEVFN-YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 137 (297)
T ss_pred HHHHHHHhcchhhhhhHHH-----HHhhhhhhhhhcCCCcHHHHH-HHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence 3455666666666665322 244556666777777777665 3666666666677777777777777777777767
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
+||..+...|+ +.-|...+.+.-+-||+++
T Consensus 138 NRgi~~YY~gR-~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 138 NRGIALYYGGR-YKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred ccceeeeecCc-hHhhHHHHHHHHhcCCCCh
Confidence 77666666663 6666666666666666655
No 165
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=1.4e-06 Score=71.84 Aligned_cols=175 Identities=14% Similarity=0.131 Sum_probs=129.7
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|.+.-|--.|.++|++.|+-+++++.+|.-+...|+|+ .|.+.|+.+++++|..-=+. .+||..+.-.|+++-
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fd-----aa~eaFds~~ELDp~y~Ya~-lNRgi~~YY~gR~~L 151 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD-----AAYEAFDSVLELDPTYNYAH-LNRGIALYYGGRYKL 151 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccch-----HHHHHhhhHhccCCcchHHH-hccceeeeecCchHh
Confidence 456778888999999999999999999999999999987 68999999999999998888 579999999999999
Q ss_pred HHHHHHHHHHcCCCChH--HHHHHHH-------HHHHhhHh--------H-----------HHHHHHHHHHHHhCCCCh-
Q psy4772 126 ALALTADAITMNPANYT--VWQYRRE-------ILKALNKD--------L-----------HQELKYIGEKIKENSKNY- 176 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~--aw~~r~~-------~l~~l~~~--------~-----------eeal~~~~~al~~~P~n~- 176 (235)
|.+.+.+--.-+|+++- .|.+.-. +-.+|.++ | -..-..++++..-..+|.
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTS 231 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHH
Confidence 99999998888888874 3443210 00011000 0 012234455554444443
Q ss_pred ------HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCc
Q psy4772 177 ------QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 177 ------~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~ 226 (235)
.+++++|..+..+|..++|...|+-|+.-+.-|.--+.|-..-+..+|-.
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~ 287 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQD 287 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccc
Confidence 47888999999999999999999999987766665544444444555543
No 166
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.52 E-value=3.3e-06 Score=81.63 Aligned_cols=172 Identities=9% Similarity=0.051 Sum_probs=126.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH--hCCCCCchhhHHHHHHHhccccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ--IAPKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~--l~p~~~~aw~~~~g~il~~~~~~ 123 (235)
.|++++|...|++..+ .+...|+.+...+.+.|+.+ +|++.|++.+. ..|+..+.- ..-..+...|..
T Consensus 373 ~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~-----~A~~lf~~M~~~g~~Pd~~T~~--~ll~a~~~~g~~ 442 (697)
T PLN03081 373 WGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGT-----KAVEMFERMIAEGVAPNHVTFL--AVLSACRYSGLS 442 (697)
T ss_pred CCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCCHHHHH--HHHHHHhcCCcH
Confidence 4677888888877654 35677888888888777653 68888887765 344444322 233456677888
Q ss_pred HHHHHHHHHHHHcCC--CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 124 ERALALTADAITMNP--ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 124 ~eAl~~~~~al~l~P--~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
++|+..|+...+..+ .+...|.....++.+.| .+++|.+++++. ... -+...|..+..++...|+.+.+...+++
T Consensus 443 ~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G-~~~eA~~~~~~~-~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREG-LLDEAYAMIRRA-PFK-PTVNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC-CHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 888888888876432 23345677778888888 489999888764 222 3556799999999999999999999999
Q ss_pred HHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 202 ILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 202 ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+++++|.+...|..+..++...|+-.++.
T Consensus 520 l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 520 LYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 99999999999888888887777765543
No 167
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.51 E-value=1e-05 Score=70.20 Aligned_cols=162 Identities=13% Similarity=0.121 Sum_probs=106.9
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
.+|++|+..-++..++.|+....-.-.-.|-..+.-..++..++|+..+.||++-||++..+= ..+|.+....|+|+.|
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAs-i~lG~v~~~~g~y~~A 233 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRAS-IILGRVELAKGDYQKA 233 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehh-hhhhHHHHhccchHHH
Confidence 467778877777777777765332211111111111122345578888888888888888876 5778888888888888
Q ss_pred HHHHHHHHHcCCCChH-HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 127 LALTADAITMNPANYT-VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 127 l~~~~~al~l~P~~~~-aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
++.++.+++.||.+.. +.--+..||..+|+ .++.+.++.++.+.++... +-.-+..+.....-.+.|-....+-+..
T Consensus 234 V~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~-~~~~~~fL~~~~~~~~g~~-~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 234 VEALERVLEQNPEYLSEVLEMLYECYAQLGK-PAEGLNFLRRAMETNTGAD-AELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHccCCcc-HHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 8888888888888754 55556777888884 7888888888877766543 3334444455555566777777777777
Q ss_pred CCCChH
Q psy4772 206 DAKNYH 211 (235)
Q Consensus 206 dp~n~~ 211 (235)
+|.-.-
T Consensus 312 ~Pt~~g 317 (389)
T COG2956 312 KPTMRG 317 (389)
T ss_pred CCcHHH
Confidence 776544
No 168
>KOG4555|consensus
Probab=98.46 E-value=1e-06 Score=67.06 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=55.6
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc----hhhHHHHHHHhcccc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES----PWNYLRGAVVNAGEK 122 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~----aw~~~~g~il~~~~~ 122 (235)
|+.++|++.|.++|.+.|++++++++|+..+..+|+-+ +|++.+++++++...... ++ ..+|.++..+|+
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e-----~ALdDLn~AleLag~~trtacqa~-vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDE-----EALDDLNKALELAGDQTRTACQAF-VQRGLLYRLLGN 130 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChH-----HHHHHHHHHHHhcCccchHHHHHH-HHHHHHHHHhCc
Confidence 45677777777777777777777777777777766543 567777777776655442 34 246666666666
Q ss_pred cHHHHHHHHHHHHcCCC
Q psy4772 123 SERALALTADAITMNPA 139 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~ 139 (235)
.+.|...|+.+.++-.+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 66666666666554433
No 169
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.41 E-value=3.1e-05 Score=77.98 Aligned_cols=171 Identities=8% Similarity=-0.018 Sum_probs=94.3
Q ss_pred hcHHHHHHHHHhHHhcC-CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh--CCCCCchhhHHHHHHHhccccc
Q psy4772 47 NLFSDELSYIEGLISHD-VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI--APKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~-P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l--~p~~~~aw~~~~g~il~~~~~~ 123 (235)
|++++|++.|+...+.+ +.+...|..+...+.+.|+++ +|+..|....+. .|+ ...|+ .+...+.+.|++
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~d-----eAl~lf~eM~~~Gv~PD-~~Tyn-sLI~a~~k~G~~ 665 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD-----FALSIYDDMKKKGVKPD-EVFFS-ALVDVAGHAGDL 665 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHcCCCCC-HHHHH-HHHHHHHhCCCH
Confidence 45566666666666554 345555666666666655543 466666655554 333 22332 233455556666
Q ss_pred HHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-CCCChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 124 ERALALTADAITMN-PANYTVWQYRREILKALNKDLHQELKYIGEKIKE-NSKNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 124 ~eAl~~~~~al~l~-P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~-~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
++|++.++.+.+.. +-+...|+....+|.+.| .+++|+..|++.... -..+..+|+.+...+.+.|++++|++.++.
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G-~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAK-NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666666543 334556666666666666 366666666665442 122455666666666667777777776666
Q ss_pred HHHh--CCCChHHhHHHHHHHhhcCCc
Q psy4772 202 ILAQ--DAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 202 ai~l--dp~n~~aw~~r~~~l~~l~~~ 226 (235)
.... .| |..+|..+...+...|+.
T Consensus 745 M~~~Gi~P-d~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 745 MKRLGLCP-NTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHcCCCC-CHHHHHHHHHHHHHCCCH
Confidence 5543 23 333444444444444443
No 170
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.40 E-value=3.3e-05 Score=77.82 Aligned_cols=173 Identities=8% Similarity=0.008 Sum_probs=108.0
Q ss_pred hcHHHHHHHHHhHHhc----CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhC-CCCCchhhHHHHHHHhccc
Q psy4772 47 NLFSDELSYIEGLISH----DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIA-PKNESPWNYLRGAVVNAGE 121 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~----~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~-p~~~~aw~~~~g~il~~~~ 121 (235)
|++++|.+.++..... .|+ ...|..+-.++.+.|++ ++|++.|+.+.+.+ +-+...|+ .+...+.+.|
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~l-----deA~elf~~M~e~gi~p~~~tyn-sLI~ay~k~G 628 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQV-----DRAKEVYQMIHEYNIKGTPEVYT-IAVNSCSQKG 628 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHcCCCCChHHHH-HHHHHHHhcC
Confidence 4556666666665542 232 34555555555555554 35667777766665 33445664 3446666677
Q ss_pred ccHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-CCChHHhHHHHHHHHHcCCchHHHHH
Q psy4772 122 KSERALALTADAITM--NPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN-SKNYQVWRHRQIIVEWMGEPDEELAL 198 (235)
Q Consensus 122 ~~~eAl~~~~~al~l--~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-P~n~~aw~~r~~~l~~l~~~~~Al~~ 198 (235)
+.++|+..|++..+. .|+ ...|+.....+.+.| .+++|+..+++.++.. +-+..+|+.+...+.+.|++++|++.
T Consensus 629 ~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G-~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 629 DWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAG-DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 777777777777665 343 456666666666677 4777777777777654 34566777777777888888888888
Q ss_pred HHHHHHh--CCCChHHhHHHHHHHhhcCCcccc
Q psy4772 199 TAAILAQ--DAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 199 ~~~ai~l--dp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
|+..... .| +..+|..+...+...|+..+|
T Consensus 707 f~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 707 YEDIKSIKLRP-TVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 7776543 34 456677766666555555444
No 171
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.36 E-value=1.3e-05 Score=77.57 Aligned_cols=166 Identities=9% Similarity=0.060 Sum_probs=120.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh--CCCCCchhhHHHHHHHhccccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI--APKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l--~p~~~~aw~~~~g~il~~~~~~ 123 (235)
.|++++|...|+.. .+.+...|..+...+...|+.+ +|+..|.+.... .|+.. .++ .+..++.+.|.+
T Consensus 272 ~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~-----eA~~lf~~M~~~g~~pd~~-t~~-~ll~a~~~~g~~ 341 (697)
T PLN03081 272 CGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSE-----EALCLYYEMRDSGVSIDQF-TFS-IMIRIFSRLALL 341 (697)
T ss_pred CCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHH-----HHHHHHHHHHHcCCCCCHH-HHH-HHHHHHHhccch
Confidence 57789999999865 4568889999999999988764 688888887653 34433 342 345667778888
Q ss_pred HHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 124 ERALALTADAITMN-PANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 124 ~eAl~~~~~al~l~-P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
++|.+.+..+++.. +.+..+++.+...|.+.| .+++|...|++..+ .|..+|+.+...+.+.|+.++|++.|++.
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G-~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG-RMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC-CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888876 667777888888888888 48888888887654 36678888888888888888888888887
Q ss_pred HHh--CCCChHHhHHHHHHHhhcCCc
Q psy4772 203 LAQ--DAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 203 i~l--dp~n~~aw~~r~~~l~~l~~~ 226 (235)
+.. .|+ ..++.....++...|+-
T Consensus 418 ~~~g~~Pd-~~T~~~ll~a~~~~g~~ 442 (697)
T PLN03081 418 IAEGVAPN-HVTFLAVLSACRYSGLS 442 (697)
T ss_pred HHhCCCCC-HHHHHHHHHHHhcCCcH
Confidence 763 343 33344444434444433
No 172
>KOG2376|consensus
Probab=98.36 E-value=4e-06 Score=77.40 Aligned_cols=118 Identities=17% Similarity=0.169 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCC--ChHHH-HHHHHHHHHhhHhHHHHH
Q psy4772 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPA--NYTVW-QYRREILKALNKDLHQEL 162 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~--~~~aw-~~r~~~l~~l~~~~eeal 162 (235)
+.+++|++.++++|...|+..++. +.+=.++...++|++||. .++.++. -.... ++++.|.+++++ .++|+
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~-~cKvValIq~~ky~~ALk----~ikk~~~~~~~~~~~fEKAYc~Yrlnk-~Deal 99 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAI-RCKVVALIQLDKYEDALK----LIKKNGALLVINSFFFEKAYCEYRLNK-LDEAL 99 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhH-hhhHhhhhhhhHHHHHHH----HHHhcchhhhcchhhHHHHHHHHHccc-HHHHH
Confidence 456799999999999999999999 566677888999999994 4555553 11122 799999999995 89999
Q ss_pred HHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHH
Q psy4772 163 KYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 163 ~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~a 212 (235)
.+++ ..++....+..-++.+++++|+|++|++.|+..++-+.++...
T Consensus 100 k~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 100 KTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred HHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 9999 5666667789999999999999999999999998877666654
No 173
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.32 E-value=1.3e-05 Score=61.98 Aligned_cols=84 Identities=12% Similarity=-0.014 Sum_probs=54.1
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhh--HHHHHHHhcccccHHHHHHHHHHHHcCCCChH--
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWN--YLRGAVVNAGEKSERALALTADAITMNPANYT-- 142 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~--~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~-- 142 (235)
+..++..|.-.+..|+|. +|++.+..+....|-..-+=. ..+|.++...+++++|+..+++.|+++|.++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~-----~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYE-----EAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred HHHHHHHHHHHHHhCCHH-----HHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 455666666666666654 567777777777666653321 23566667777777777777777777776654
Q ss_pred -HHHHHHHHHHHhh
Q psy4772 143 -VWQYRREILKALN 155 (235)
Q Consensus 143 -aw~~r~~~l~~l~ 155 (235)
|++.+|.+.....
T Consensus 85 Ya~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 85 YAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHHHHHh
Confidence 6666776666654
No 174
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.32 E-value=1.5e-05 Score=61.67 Aligned_cols=101 Identities=10% Similarity=-0.030 Sum_probs=89.4
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChH---HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH---HhHHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYT---VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ---VWRHRQI 184 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~---aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~---aw~~r~~ 184 (235)
+..|.-....|+|++|++.++.+....|-... |...++.++..-+ .+++|+..+++.|+++|.++. +++.+|+
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~-~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG-DYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 67888888999999999999999999887654 6667888888888 599999999999999999886 8999999
Q ss_pred HHHHcCC---------------chHHHHHHHHHHHhCCCChHH
Q psy4772 185 IVEWMGE---------------PDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 185 ~l~~l~~---------------~~~Al~~~~~ai~ldp~n~~a 212 (235)
+...+.. ..+|+..|+..|..-|++..+
T Consensus 93 ~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 93 SYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9988765 679999999999999998765
No 175
>KOG0376|consensus
Probab=98.31 E-value=1.4e-06 Score=78.82 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=88.8
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
+.|+.|+..|.+||.++|.++..+-+|+.+....+.|. .|+.++.++|+++|....++ +++|.....++++.+|
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~-----~Al~Da~kaie~dP~~~K~Y-~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFG-----GALHDALKAIELDPTYIKAY-VRRGTAVMALGEFKKA 91 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhh-----hHHHHHHhhhhcCchhhhee-eeccHHHHhHHHHHHH
Confidence 57899999999999999999999999999999888775 79999999999999999999 7999999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRRE 149 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~ 149 (235)
+..+++...+.|+.+.+---...
T Consensus 92 ~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 92 LLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHhhhcCcCcHHHHHHHHH
Confidence 99999999999999988544333
No 176
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.28 E-value=7.1e-07 Score=52.14 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=20.4
Q ss_pred HHHHHHhCCCChHHhHHHHHHHHHcCCchHHH
Q psy4772 165 IGEKIKENSKNYQVWRHRQIIVEWMGEPDEEL 196 (235)
Q Consensus 165 ~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al 196 (235)
|+++|+++|+|+.+|+++|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666554
No 177
>KOG3785|consensus
Probab=98.27 E-value=4.4e-05 Score=67.19 Aligned_cols=175 Identities=8% Similarity=-0.043 Sum_probs=122.1
Q ss_pred hcHHHHHHHHHhHHhcCCCch-hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNN-SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~-~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.+|..|+.+++-.+.++.+-. +.-.-.|.|.+.+|+|. +|++.|..+.+.+.-....| .+++.+..-+|.|.+
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~-----~Al~~Y~~~~~~~~~~~el~-vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYE-----EALNVYTFLMNKDDAPAELG-VNLACCKFYLGQYIE 109 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHH-----HHHHHHHHHhccCCCCcccc-hhHHHHHHHHHHHHH
Confidence 466888888888877765544 33344677778887764 67888888877777777777 467788888888888
Q ss_pred HHHHHHHHHHcCCCChH---HHHHHH-----------------HHHHHh---------hHhHHHHHHHHHHHHHhCCCCh
Q psy4772 126 ALALTADAITMNPANYT---VWQYRR-----------------EILKAL---------NKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~---aw~~r~-----------------~~l~~l---------~~~~eeal~~~~~al~~~P~n~ 176 (235)
|-....++ |+.+- ..+|.+ ..++.. ...+.+|++.|.+++.-+|...
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 76644433 33322 222211 111000 0147889999999999888888
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH--hhcCCcccccc
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI--NLLDDDDRGVL 231 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l--~~l~~~~~~~~ 231 (235)
..-.+++.++.++.=++-+.+.++.-+...|+..-|-+-+...+ .+-|+.+++|.
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHH
Confidence 88888999999999889889999999999999998887777666 46666666553
No 178
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.25 E-value=0.00018 Score=63.83 Aligned_cols=179 Identities=8% Similarity=-0.016 Sum_probs=128.7
Q ss_pred hhhhcHHHHHHHHHhHHhcCCC-chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 44 QKCNLFSDELSYIEGLISHDVR-NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL~~~P~-~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
+.+|+++.+-.++.++=++.|+ .-.+...+..++...|++. .|......++...|+++.... ..-.++...|.
T Consensus 129 ~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~-----aA~~~v~~ll~~~pr~~~vlr-La~r~y~~~g~ 202 (400)
T COG3071 129 QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP-----AARENVDQLLEMTPRHPEVLR-LALRAYIRLGA 202 (400)
T ss_pred HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch-----hHHHHHHHHHHhCcCChHHHH-HHHHHHHHhcc
Confidence 4578888888888888888444 3566778888888888775 577888899999999999885 45578888888
Q ss_pred cHHHHHHHHHHHHcC---CCChHHHHHHHHH---------------------------------------HHHhhH----
Q psy4772 123 SERALALTADAITMN---PANYTVWQYRREI---------------------------------------LKALNK---- 156 (235)
Q Consensus 123 ~~eAl~~~~~al~l~---P~~~~aw~~r~~~---------------------------------------l~~l~~---- 156 (235)
+++.+..+.+.-+-. +....-+-+.++. +..+|.
T Consensus 203 ~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A 282 (400)
T COG3071 203 WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEA 282 (400)
T ss_pred HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHH
Confidence 877776666554421 1111111111100 000110
Q ss_pred --------------------------hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCCh
Q psy4772 157 --------------------------DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 157 --------------------------~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~ 210 (235)
+.+.=++..++.++.+|.++..+..+|.++.+.+.+.+|-++++.||..-|. .
T Consensus 283 ~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~ 361 (400)
T COG3071 283 QEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-A 361 (400)
T ss_pred HHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-h
Confidence 1233445577888899999999999999999999999999999999999886 4
Q ss_pred HHhHHHHHHHhhcCCcccc
Q psy4772 211 HAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 211 ~aw~~r~~~l~~l~~~~~~ 229 (235)
+.|..++.++..+|..-++
T Consensus 362 ~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 362 SDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhHHHHHHHHHHcCChHHH
Confidence 6788999999888887544
No 179
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.24 E-value=1.5e-06 Score=60.00 Aligned_cols=63 Identities=11% Similarity=0.191 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-------CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKEN-------SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-------P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
.+++++|.++..+|+ +++|+.++++++++. |.-..+++++|.++..+|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGR-YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444555555555552 555555555555321 112335555555555566666666665555543
No 180
>KOG0376|consensus
Probab=98.18 E-value=1.9e-06 Score=77.97 Aligned_cols=119 Identities=14% Similarity=0.102 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHH
Q psy4772 87 VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIG 166 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~ 166 (235)
++..|+..|.|||.++|++...+. .|+..+.+.+.+..|+....++++++|....+++.||.+...+++ +.+|+..++
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~a-nRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~-~~~A~~~l~ 96 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFA-NRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE-FKKALLDLE 96 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeec-hhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH-HHHHHHHHH
Confidence 456788888888888888888884 677788888888888888888888888888888888888888885 888888888
Q ss_pred HHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHH
Q psy4772 167 EKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 167 ~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~a 212 (235)
......|+.+.+--...-+-.. -...-|++++-.++.+...
T Consensus 97 ~~~~l~Pnd~~~~r~~~Ec~~~-----vs~~~fe~ai~~~~~d~~s 137 (476)
T KOG0376|consen 97 KVKKLAPNDPDATRKIDECNKI-----VSEEKFEKAILTPEGDKKS 137 (476)
T ss_pred HhhhcCcCcHHHHHHHHHHHHH-----HHHHhhhhcccCCccCCcc
Confidence 8888888887654332222111 1122355566655555443
No 181
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.18 E-value=4.3e-06 Score=51.59 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=24.4
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
.+|..++.++..+|++++|++.++++++.+|+|..+|..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 35555666666666666666666666666666666665554
No 182
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.14 E-value=2e-06 Score=59.36 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=41.4
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHc----C---CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Q psy4772 112 LRGAVVNAGEKSERALALTADAITM----N---PANYTVWQYRREILKALNKDLHQELKYIGEKIKE 171 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l----~---P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~ 171 (235)
.+|.++..+|++++|+.+|++++.+ . |.-..+++++|.++..+|+ +++|+.++++++++
T Consensus 10 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~i 75 (78)
T PF13424_consen 10 NLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD-YEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence 5677777777777777777777754 1 2235567778888888884 88888888888775
No 183
>KOG0545|consensus
Probab=98.12 E-value=2.5e-05 Score=65.46 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=89.0
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHH------------------cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAIT------------------MNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~------------------l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
...|+-+.+.|+|+||..+|..|+. ++-.....+.+...|+...+ .|-++++.+..+|+.+
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~-e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE-EYYEVLEHCSEILRHH 260 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH-HHHHHHHHHHHHHhcC
Confidence 4678888888999998888887763 34445556777888998888 5999999999999999
Q ss_pred CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 173 SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 173 P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
|.|..|++-|+.+.-..=+..+|...+.+++++||.-.++-.-
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 9999999999999999889999999999999999998887443
No 184
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.08 E-value=7.5e-05 Score=63.45 Aligned_cols=106 Identities=12% Similarity=0.084 Sum_probs=74.7
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh---HH
Q psy4772 70 WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSERALALTADAITMNPANY---TV 143 (235)
Q Consensus 70 ~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~---~a 143 (235)
.|+.+.-++..|+|. .|.+.|.+-++.-|+.. .|. |-+|.++..+|++++|...|..+++-.|+++ ++
T Consensus 144 ~Y~~A~~~~ksgdy~-----~A~~~F~~fi~~YP~s~~~~nA~-yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApda 217 (262)
T COG1729 144 LYNAALDLYKSGDYA-----EAEQAFQAFIKKYPNSTYTPNAY-YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDA 217 (262)
T ss_pred HHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCCCcccchhH-HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHH
Confidence 555666666667664 57777777777777765 344 4467777778888888888887777665554 56
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 144 WQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHR 182 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r 182 (235)
++.+|.++.++++ -++|-..++++++.+|+...+-.-+
T Consensus 218 llKlg~~~~~l~~-~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 218 LLKLGVSLGRLGN-TDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 7777888888874 6778888888888888777665544
No 185
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.07 E-value=6.9e-06 Score=47.46 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=15.4
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
+|+++|.++..+|++++|+++|++||+++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
No 186
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.05 E-value=3.6e-06 Score=49.13 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=18.4
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHH
Q psy4772 130 TADAITMNPANYTVWQYRREILKALNKDLHQEL 162 (235)
Q Consensus 130 ~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal 162 (235)
|+++|+++|+++.+|+++|.+|...| ++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g-~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQG-DYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCc-CHHhhc
Confidence 45566666666666666666666655 355543
No 187
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.05 E-value=1.2e-05 Score=49.49 Aligned_cols=41 Identities=10% Similarity=0.295 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
.+|..++.++..+| ++++|+..++++++.+|+|+.+|..++
T Consensus 2 ~~~~~la~~~~~~G-~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLG-QPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34555566666666 356666666666666666666665554
No 188
>KOG4642|consensus
Probab=98.04 E-value=1.2e-05 Score=67.12 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=76.4
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
..|.+|+..|.+||.++|-.+.-|.+|+.+++.+.+++ ...+++.++++++|+...+. +.+|..+.....|.+|
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~-----~v~~dcrralql~~N~vk~h-~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWE-----PVEEDCRRALQLDPNLVKAH-YFLGQWLLQSKGYDEA 97 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhh-----hhhhhHHHHHhcChHHHHHH-HHHHHHHHhhccccHH
Confidence 35799999999999999999999999999999988775 57899999999999999999 7899999999999999
Q ss_pred HHHHHHHHH
Q psy4772 127 LALTADAIT 135 (235)
Q Consensus 127 l~~~~~al~ 135 (235)
+....++..
T Consensus 98 I~~Lqra~s 106 (284)
T KOG4642|consen 98 IKVLQRAYS 106 (284)
T ss_pred HHHHHHHHH
Confidence 999999954
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.04 E-value=3.2e-05 Score=66.81 Aligned_cols=161 Identities=11% Similarity=0.048 Sum_probs=110.0
Q ss_pred hcHHHHHHHHHhHHhcCCC------chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC------chhhHHHH
Q psy4772 47 NLFSDELSYIEGLISHDVR------NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE------SPWNYLRG 114 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~------~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~------~aw~~~~g 114 (235)
++|++|..+|.++..+.-+ -+.++...+.++... ..++|++.+.+++.+--... .+. ...|
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~------~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~-~~lA 121 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG------DPDEAIECYEKAIEIYREAGRFSQAAKCL-KELA 121 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT------THHHHHHHHHHHHHHHHHCT-HHHHHHHH-HHHH
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHhcCcHHHHHHHH-HHHH
Confidence 5677888888777665432 234455555555444 23578899998888633332 234 3577
Q ss_pred HHHhcc-cccHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC----h---HHhH
Q psy4772 115 AVVNAG-EKSERALALTADAITMNPAN------YTVWQYRREILKALNKDLHQELKYIGEKIKENSKN----Y---QVWR 180 (235)
Q Consensus 115 ~il~~~-~~~~eAl~~~~~al~l~P~~------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n----~---~aw~ 180 (235)
.++... |++++|+++|++|+++.-.. .......+.++..++ +|++|+..|++++...-.+ + ..+.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~-~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG-RYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 888887 99999999999999873222 224456788888888 4999999999998854322 2 2344
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 181 HRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 181 ~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
..+.++...|++..|...+++....+|...+.=-+
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 56667788999999999999999999988776443
No 190
>PLN03077 Protein ECB2; Provisional
Probab=98.02 E-value=0.00018 Score=71.26 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=53.1
Q ss_pred CCchhhHHHHHHHhcccccHHHHHHHHHHHH--cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC--ChHHhH
Q psy4772 105 NESPWNYLRGAVVNAGEKSERALALTADAIT--MNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK--NYQVWR 180 (235)
Q Consensus 105 ~~~aw~~~~g~il~~~~~~~eAl~~~~~al~--l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~--n~~aw~ 180 (235)
+..+|| .+...+...|+.++|++.|++..+ ..|+..+ +...-..+.+.| .+++++.+++...+..+- +...|.
T Consensus 553 d~~s~n-~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g-~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 553 DVVSWN-ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSG-MVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred ChhhHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcC-hHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 444453 333445555555556655555554 2344333 222223344445 256666666655533222 224555
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 181 HRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 181 ~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
.+..++.+.|++++|.+.+++. .+.|+ ...|..+-..+
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac 667 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNAC 667 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH
Confidence 5555566666666666665553 23332 44454444444
No 191
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=98.01 E-value=1.1e-05 Score=45.89 Aligned_cols=28 Identities=43% Similarity=0.891 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 195 ELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 195 Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
+++++..+|..+|+|+++|.||.++++.
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 4555555555555555555555555543
No 192
>KOG2053|consensus
Probab=98.01 E-value=0.00021 Score=68.92 Aligned_cols=144 Identities=12% Similarity=0.046 Sum_probs=90.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
-+.|++|++.+++.++..|+...|...+|.++.++|+++ +|..+.+..=..-|.+..... .+-.|+..++++++
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~-----ea~~~Le~~~~~~~~D~~tLq-~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGD-----EALKLLEALYGLKGTDDLTLQ-FLQNVYRDLGKLDE 95 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCch-----hHHHHHhhhccCCCCchHHHH-HHHHHHHHHhhhhH
Confidence 356777777777777777777777777777777777776 466555544445555555553 34466777777777
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH-HhHHHHHHHHHcCCchHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ-VWRHRQIIVEWMGEPDEELA 197 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~-aw~~r~~~l~~l~~~~~Al~ 197 (235)
|+.+|++++..+|+ ..-..+...++.+-+ .|.+--+.--+.-+..|+++. -|.-.+.++......++...
T Consensus 96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~-~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 96 AVHLYERANQKYPS-EELLYHLFMAYVREK-SYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHHHHHHHhhCCc-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCccccc
Confidence 77777777777777 666666666666665 244333322233335666654 45555555555555544443
No 193
>KOG2796|consensus
Probab=97.98 E-value=0.0001 Score=62.50 Aligned_cols=132 Identities=12% Similarity=0.183 Sum_probs=101.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHH----HcCCCChHHHHHHHHH
Q psy4772 75 FVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAI----TMNPANYTVWQYRREI 150 (235)
Q Consensus 75 ~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al----~l~P~~~~aw~~r~~~ 150 (235)
.++...|+|. =.+..++++++.+|..-.+....+|.+....|+.+.|-..|+.+- .++.--.....++...
T Consensus 185 ~~llG~kEy~-----iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 185 NCLLGMKEYV-----LSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHhcchhhh-----hhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3444455553 578889999999966666665678889889999999988888443 3443333333344444
Q ss_pred HHHhh-HhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 151 LKALN-KDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 151 l~~l~-~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
+..+| +++.+|..++++.+..||.++.+-++++.++.-+|+..+|++..+.++.++|..+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 44443 25899999999999999999999999999999999999999999999999998653
No 194
>KOG3785|consensus
Probab=97.98 E-value=0.00015 Score=63.89 Aligned_cols=146 Identities=7% Similarity=-0.047 Sum_probs=109.1
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHH--HHH-------HHHHHHHHHhCCCCCc--hh----
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVI--QRE-------IDYCRDKIQIAPKNES--PW---- 109 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~--~~A-------l~~~~kal~l~p~~~~--aw---- 109 (235)
.+|+|++|+..|..+.+.+.-+.+.|.+++.+.+.+|+|.++.. ++| --.|.-+.+++-+.-. .+
T Consensus 69 hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~Lq 148 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ 148 (557)
T ss_pred hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence 35899999999999999999999999999999999999875310 000 0011122222211100 00
Q ss_pred -----hHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 110 -----NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQI 184 (235)
Q Consensus 110 -----~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~ 184 (235)
...++.+...+-.|+||++.|+++|.-+|+....=.+.+.|+.+|. .++-+.+.++--++..|+++-|-+.++-
T Consensus 149 D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD-Yydvsqevl~vYL~q~pdStiA~NLkac 227 (557)
T KOG3785|consen 149 DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD-YYDVSQEVLKVYLRQFPDSTIAKNLKAC 227 (557)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 0112334444556899999999999999999998899999999998 5899999999999999999999999998
Q ss_pred HHHHcCC
Q psy4772 185 IVEWMGE 191 (235)
Q Consensus 185 ~l~~l~~ 191 (235)
.+.++-+
T Consensus 228 n~fRl~n 234 (557)
T KOG3785|consen 228 NLFRLIN 234 (557)
T ss_pred HHhhhhc
Confidence 8877654
No 195
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.96 E-value=1.6e-05 Score=45.90 Aligned_cols=32 Identities=9% Similarity=0.179 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
.+|+++|.++..+++ +++|+.+|+++|+++|+
T Consensus 2 ~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGD-YEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCC-chHHHHHHHHHHHHCcC
Confidence 456666666666663 66666666666666665
No 196
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.95 E-value=2.2e-05 Score=45.09 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=17.7
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n 209 (235)
.+|+++|.++..+|++++|+.++++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345555555555555555555555555555543
No 197
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.92 E-value=0.00016 Score=61.47 Aligned_cols=105 Identities=14% Similarity=0.105 Sum_probs=93.9
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCCh---HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh---HHhHHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANY---TVWQYRREILKALNKDLHQELKYIGEKIKENSKNY---QVWRHRQI 184 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~---~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~---~aw~~r~~ 184 (235)
|..+.-+...|+|.+|...|..-+...|++. .|.+.+|.++...| ++++|...|-.+++..|+++ .+.+.+|.
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg-~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG-DYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc-cchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4566777788999999999999999999875 58999999999999 59999999999999888665 67999999
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 185 IVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216 (235)
Q Consensus 185 ~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r 216 (235)
++..+|+.++|-..++.++..-|+...+-.-+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999998875443
No 198
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.91 E-value=0.00064 Score=67.41 Aligned_cols=176 Identities=13% Similarity=-0.020 Sum_probs=103.3
Q ss_pred hhcHHHHHHHHHhHHhcCCC---------chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC-----chhhH
Q psy4772 46 CNLFSDELSYIEGLISHDVR---------NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE-----SPWNY 111 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~---------~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~-----~aw~~ 111 (235)
.++++++...++.+...-+. ...+...+|.+....|+++ +|...+..++...|... .++ .
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~a~-~ 495 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPE-----EAERLAELALAELPLTWYYSRIVAT-S 495 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHhcCCCccHHHHHHHH-H
Confidence 35667777777776654221 1234445566666666654 56777777776544432 123 2
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC--------ChH
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPAN------YTVWQYRREILKALNKDLHQELKYIGEKIKENSK--------NYQ 177 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~--------n~~ 177 (235)
.+|.++...|++++|+..+.+++...... ..++..++.++...| ++++|...+++++.+-.. ...
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG-FLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 45666677777777777777777653321 124455667777777 477777777777664211 122
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHhCCC-----ChHHhHHHHHHHhhcCCccc
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILAQDAK-----NYHAWQHRQWVINLLDDDDR 228 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~-----n~~aw~~r~~~l~~l~~~~~ 228 (235)
++..++.++...|++++|...+.+++.+... ...++..++.+....|+...
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 630 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDN 630 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHH
Confidence 3445666777777777777777777665322 23334445555555555433
No 199
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=97.90 E-value=2.8e-05 Score=44.26 Aligned_cols=29 Identities=24% Similarity=0.673 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCCChHHhHHHHHHHHHc
Q psy4772 161 ELKYIGEKIKENSKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 161 al~~~~~al~~~P~n~~aw~~r~~~l~~l 189 (235)
++++...+|..+|+|+++|++|.+++.++
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 45566666666666666666666665543
No 200
>KOG1308|consensus
Probab=97.90 E-value=3.1e-06 Score=73.75 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKI 169 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al 169 (235)
+||+.|..+|.++|.....+. .|+.++.++++...|+..|..+|++||+...-+-.|+....-|| .|++|-..+..++
T Consensus 132 ~ai~~~t~ai~lnp~~a~l~~-kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg-~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 132 TAIELFTSAIELNPPLAILYA-KRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG-NWEEAAHDLALAC 209 (377)
T ss_pred hhhcccccccccCCchhhhcc-cccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh-chHHHHHHHHHHH
Confidence 566666666666666666552 45666666666666666666666666666666666666666666 3666666666666
Q ss_pred HhCC
Q psy4772 170 KENS 173 (235)
Q Consensus 170 ~~~P 173 (235)
+++-
T Consensus 210 kld~ 213 (377)
T KOG1308|consen 210 KLDY 213 (377)
T ss_pred hccc
Confidence 6554
No 201
>KOG1130|consensus
Probab=97.88 E-value=3.5e-05 Score=68.89 Aligned_cols=182 Identities=9% Similarity=0.038 Sum_probs=135.3
Q ss_pred hhcHHHHHHHHHhHHhcCCC------chhHhhhHHHHHhhcCCCC---------------HHHHHHHHHHHHHHHHhCCC
Q psy4772 46 CNLFSDELSYIEGLISHDVR------NNSAWTQRYFVINHTTQFT---------------PEVIQREIDYCRDKIQIAPK 104 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~------~~~a~~~~g~~l~~~~~~~---------------e~~~~~Al~~~~kal~l~p~ 104 (235)
.|.|++|+.++.+-|.+..+ -.-|+|++|.|+...|+-- .+.++.|+++|..-|++...
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999998887766443 3578999999998887521 14688899999988887766
Q ss_pred CCc------hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh------HHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-
Q psy4772 105 NES------PWNYLRGAVVNAGEKSERALALTADAITMNPANY------TVWQYRREILKALNKDLHQELKYIGEKIKE- 171 (235)
Q Consensus 105 ~~~------aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~------~aw~~r~~~l~~l~~~~eeal~~~~~al~~- 171 (235)
... ++. ++|..+..+|+++.|+..-+.-|++.-.+- -|+.++|.++.-+|+ ++.|+++|++++.+
T Consensus 188 lgDr~aqGRa~G-nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~-fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 188 LGDRLAQGRAYG-NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN-FELAIEHYKLTLNLA 265 (639)
T ss_pred hhhHHhhcchhc-ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc-cHhHHHHHHHHHHHH
Confidence 543 443 466777778999999998888777654433 378889999999995 99999999986542
Q ss_pred ---CC--CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC------CCChHHhHHHHHHHhhcCCcccc
Q psy4772 172 ---NS--KNYQVWRHRQIIVEWMGEPDEELALTAAILAQD------AKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 172 ---~P--~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld------p~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
-. --.+.-|.+|..+.-+..+++|+++..+-+.+- ..-..+..-+|.+.+.+|.-.+|
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 22 234677889999999999999999988876543 33455666778888777765443
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.88 E-value=0.00075 Score=54.70 Aligned_cols=136 Identities=7% Similarity=0.014 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAIT-MNPANYTVWQYRREILKALNKDLHQELKYIGEK 168 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~-l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~a 168 (235)
+++.-..+.+.+.|....- +++|..+.++|++.||...|++++. +.-.++.....++.....++ ++..+...++++
T Consensus 74 R~~Rea~~~~~~ApTvqnr--~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~-~~A~a~~tLe~l 150 (251)
T COG4700 74 RHLREATEELAIAPTVQNR--YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ-EFAAAQQTLEDL 150 (251)
T ss_pred HHHHHHHHHHhhchhHHHH--HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc-cHHHHHHHHHHH
Confidence 4555566777777877664 4689999999999999999999986 67888899999999999999 499999999999
Q ss_pred HHhCC--CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 169 IKENS--KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 169 l~~~P--~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
.+-+| ..++...-.+.++..+|++..|...|+.++.--|+...- .+.+..|...|+.+++
T Consensus 151 ~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar-~~Y~e~La~qgr~~ea 212 (251)
T COG4700 151 MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQAR-IYYAEMLAKQGRLREA 212 (251)
T ss_pred hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHH-HHHHHHHHHhcchhHH
Confidence 99988 456677778889999999999999999999999986554 5555556666766543
No 203
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.86 E-value=0.00058 Score=67.74 Aligned_cols=155 Identities=11% Similarity=-0.007 Sum_probs=119.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCch-----hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc------hhhHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNN-----SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES------PWNYLRG 114 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~-----~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~------aw~~~~g 114 (235)
.|++++|...++.++...|... .++..+|.++...|+++ +|...+.+++........ ++ ..+|
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~-----~A~~~~~~al~~~~~~g~~~~~~~~~-~~la 538 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA-----RALAMMQQTEQMARQHDVYHYALWSL-LQQS 538 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHhhhcchHHHHHHH-HHHH
Confidence 4789999999999998655532 45678888888899875 688888888876544322 23 2467
Q ss_pred HHHhcccccHHHHHHHHHHHHcCCC--------ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC-----ChHHhHH
Q psy4772 115 AVVNAGEKSERALALTADAITMNPA--------NYTVWQYRREILKALNKDLHQELKYIGEKIKENSK-----NYQVWRH 181 (235)
Q Consensus 115 ~il~~~~~~~eAl~~~~~al~l~P~--------~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~-----n~~aw~~ 181 (235)
.++...|++++|...+.+++.+... ...++..++.++...| ++++|...+++++..... ...++..
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA-RLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 8888899999999999999886222 2334567788898999 599999999999875332 3456667
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
++.+....|++++|...+.+++.+.+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 88899999999999999999977643
No 204
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.82 E-value=0.0017 Score=57.78 Aligned_cols=153 Identities=7% Similarity=0.010 Sum_probs=117.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH----------------------------------------
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP---------------------------------------- 85 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e---------------------------------------- 85 (235)
.+++..|..-.+.++...|.++.+..-.-.++...|.+.+
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 4789999999999999999999999999999999987532
Q ss_pred -------------------------------HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHH
Q psy4772 86 -------------------------------EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAI 134 (235)
Q Consensus 86 -------------------------------~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al 134 (235)
...++|.+....+|+..-+.- . ... .-....++...=++..++.+
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L-~~~-~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--L-CRL-IPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--H-HHH-HhhcCCCCchHHHHHHHHHH
Confidence 023333344444443322211 1 111 11122355666677888888
Q ss_pred HcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 135 TMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 135 ~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+..|+++..+..+|..+.+-+ .|.+|-.+++.+|..-|. .+.|..++.++.++|+..+|-++.+.++.
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~-~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNK-LWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhh-HHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 899999999999999999998 599999999999998876 56889999999999999999999999884
No 205
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.79 E-value=0.0012 Score=60.41 Aligned_cols=168 Identities=8% Similarity=0.031 Sum_probs=107.5
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCC---CCC---chh-----------
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAP---KNE---SPW----------- 109 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p---~~~---~aw----------- 109 (235)
.+...-++.-.+||+++|++++||.-++-=-...-.-.+..+++|++.-+..+..+. .+. ..+
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~ 261 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYA 261 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhh
Confidence 356788889999999999999999877642221111111223334433333333322 111 111
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-CCCChHHhHHHHHHH
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMNPA--NYTVWQYRREILKALNKDLHQELKYIGEKIKE-NSKNYQVWRHRQIIV 186 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~P~--~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~-~P~n~~aw~~r~~~l 186 (235)
-.+++.|..++|+.+||++.+...++.+|. +..+..++-.++..++. +.++...+.+-=.+ -|++...-+.++.+.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~-Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA-YADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC-HHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 134688889999999999999999998875 44577777788888874 77777666664332 255666556565544
Q ss_pred HH-cCC---------------chHHHHHHHHHHHhCCCChHHhHH
Q psy4772 187 EW-MGE---------------PDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 187 ~~-l~~---------------~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
.+ .++ -..|++.+.+|++.+|-.+....-
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 33 222 135789999999999988875433
No 206
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.78 E-value=6.9e-05 Score=42.92 Aligned_cols=33 Identities=15% Similarity=0.448 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
.+|+++|.++..+|+ +++|+.+++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~-~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGN-YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCcCC
Confidence 456666666666663 666666666666666654
No 207
>KOG2053|consensus
Probab=97.78 E-value=0.00074 Score=65.34 Aligned_cols=139 Identities=9% Similarity=0.073 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHH
Q psy4772 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYI 165 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~ 165 (235)
..+++|++.+.++++..|+..-+- ..+|.++.++|+.++|+.+.+..-..-|.+-..+.....||..+++ ++++..+|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~-vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~-~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAK-VLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK-LDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHH-HHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh-hhHHHHHH
Confidence 456799999999999999999998 4789999999999999999998888889999999999999999995 99999999
Q ss_pred HHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH-HHHHHhhcCCcc
Q psy4772 166 GEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH-RQWVINLLDDDD 227 (235)
Q Consensus 166 ~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~-r~~~l~~l~~~~ 227 (235)
+++++.+|+ .+..+++=.++.+.++|.+--..--+.-..-|+++..+-. ...+++.....+
T Consensus 101 e~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 101 ERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred HHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence 999999999 9999999899999888864444333334467888765433 333334444433
No 208
>KOG0551|consensus
Probab=97.75 E-value=0.00014 Score=63.42 Aligned_cols=82 Identities=11% Similarity=0.167 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCCCc----hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPKNES----PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYI 165 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~----aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~ 165 (235)
.|+.+|.+.|+.+..++. .+ .+|+.+...+|.|..+|..+.+++.++|.+..+++-=+.|+..|.+ +.+|+..|
T Consensus 99 ~A~~~Yt~Glk~kc~D~dlnavLY-~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~-~~~a~nw~ 176 (390)
T KOG0551|consen 99 DAVESYTEGLKKKCADPDLNAVLY-TNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER-FAEAVNWC 176 (390)
T ss_pred HHHHHHHHHHhhcCCCccHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH-HHHHHHHH
Confidence 455555555555444443 22 2344555555555555555555555555555555555555555552 55555555
Q ss_pred HHHHHhCC
Q psy4772 166 GEKIKENS 173 (235)
Q Consensus 166 ~~al~~~P 173 (235)
+..++++-
T Consensus 177 ee~~~~d~ 184 (390)
T KOG0551|consen 177 EEGLQIDD 184 (390)
T ss_pred hhhhhhhH
Confidence 55544443
No 209
>KOG1308|consensus
Probab=97.71 E-value=2.1e-05 Score=68.68 Aligned_cols=88 Identities=17% Similarity=0.139 Sum_probs=80.8
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|.+++|++.|..+|.++|..+..+..|+.|+..+++-. .|+..|..++.+||+....+ -.+|.....+|.+++|
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~-----~airD~d~A~ein~Dsa~~y-kfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPN-----AAIRDCDFAIEINPDSAKGY-KFRGYAERLLGNWEEA 201 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCc-----hhhhhhhhhhccCccccccc-chhhHHHHHhhchHHH
Confidence 57899999999999999999999999999999988753 79999999999999999998 4699999999999999
Q ss_pred HHHHHHHHHcCCCC
Q psy4772 127 LALTADAITMNPAN 140 (235)
Q Consensus 127 l~~~~~al~l~P~~ 140 (235)
-..+..+++++-+-
T Consensus 202 a~dl~~a~kld~dE 215 (377)
T KOG1308|consen 202 AHDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHHhccccH
Confidence 99999999987443
No 210
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.69 E-value=0.01 Score=50.26 Aligned_cols=164 Identities=13% Similarity=0.180 Sum_probs=120.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCch---hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCch---hhHHHHHHHhc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNN---SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESP---WNYLRGAVVNA 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~---~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~a---w~~~~g~il~~ 119 (235)
.|+|++|...|+++.+..|-.+ .+...++.+.+..++|+ .|+...++-+++.|.++.+ . |.+|.+...
T Consensus 47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~-----~A~~~~drFi~lyP~~~n~dY~~-YlkgLs~~~ 120 (254)
T COG4105 47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYD-----LALAYIDRFIRLYPTHPNADYAY-YLKGLSYFF 120 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHhCCCCCChhHHH-HHHHHHHhc
Confidence 4899999999999999998875 67788888888888875 7999999999999999974 3 456666543
Q ss_pred c--------cccHHHHHHHHHHHHcCCCChHHHHHH-----------------HHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 120 G--------EKSERALALTADAITMNPANYTVWQYR-----------------REILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 120 ~--------~~~~eAl~~~~~al~l~P~~~~aw~~r-----------------~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
. ..-.+|+..++.++...|++..+---. |..|.+-| .+..|+.-++++++..|+
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~-~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG-AYVAAINRFEEVLENYPD 199 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHhcccc
Confidence 2 224889999999999999987643322 22333333 377888899999998876
Q ss_pred ChH---HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 175 NYQ---VWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 175 n~~---aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
-.+ ++..+..++..+|..++|-.. .++|..++-+-. |+-..+
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p~s~-~~~~~~ 244 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKT-AKVLGANYPDSQ-WYKDAY 244 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCCCCc-chhhhh
Confidence 654 667777788888887777655 566666544432 544444
No 211
>KOG4340|consensus
Probab=97.69 E-value=0.00043 Score=59.86 Aligned_cols=153 Identities=8% Similarity=0.024 Sum_probs=116.5
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
.+|.+|++++..-.+.+|++-.++..+|.|++...+|. .|-.+|.+.-++.|+-..-- +..+..+.+.+.+.+|
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~-----~AA~CYeQL~ql~P~~~qYr-lY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFA-----LAAECYEQLGQLHPELEQYR-LYQAQSLYKACIYADA 97 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhChHHHHHH-HHHHHHHHHhcccHHH
Confidence 46799999999999999999999999999999987664 68899999999999876532 2234555555666555
Q ss_pred HHHHHH------------------------------HHHcCC--CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 127 LALTAD------------------------------AITMNP--ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 127 l~~~~~------------------------------al~l~P--~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
|..... .++.-| .......+.|-++.+-| .+++|+.-|+.+++..--
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykeg-qyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEG-QYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccc-cHHHHHHHHHHHHhhcCC
Confidence 543322 222334 33444555565566666 499999999999999999
Q ss_pred ChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 175 NYQVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 175 n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
++-.-++.+.+..+.+.+..|++.+...|+.-
T Consensus 177 qpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 177 QPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999998777666543
No 212
>KOG0545|consensus
Probab=97.67 E-value=0.00063 Score=57.26 Aligned_cols=111 Identities=11% Similarity=0.054 Sum_probs=86.5
Q ss_pred hhHhhhHHHHHhhcCCCCHH--HHHHHHHHHHHHHHh-CCCCCchh----------hHHHHHHHhcccccHHHHHHHHHH
Q psy4772 67 NSAWTQRYFVINHTTQFTPE--VIQREIDYCRDKIQI-APKNESPW----------NYLRGAVVNAGEKSERALALTADA 133 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~--~~~~Al~~~~kal~l-~p~~~~aw----------~~~~g~il~~~~~~~eAl~~~~~a 133 (235)
..++..+|.=++.+|+|.|+ .+.+|+......... .|-.+ -| ..+...|+...|.|-++++.+..+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~-eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEP-EWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCCh-HHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 56788899999999998763 466677666554433 33333 22 123456777889999999999999
Q ss_pred HHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHh
Q psy4772 134 ITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVW 179 (235)
Q Consensus 134 l~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw 179 (235)
|..+|.+..|++-|+.+.-..- +..+|...+.++|+++|.-.++=
T Consensus 257 L~~~~~nvKA~frRakAhaa~W-n~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVW-NEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhcChhhHHHH
Confidence 9999999999999999998887 47999999999999999865543
No 213
>KOG3081|consensus
Probab=97.66 E-value=0.0015 Score=55.60 Aligned_cols=163 Identities=10% Similarity=0.018 Sum_probs=113.9
Q ss_pred HHHHhHHhcCCCchhHhhhHH-HHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHH
Q psy4772 54 SYIEGLISHDVRNNSAWTQRY-FVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTAD 132 (235)
Q Consensus 54 ~~~~~aL~~~P~~~~a~~~~g-~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~ 132 (235)
..++..+...-.+-..|..++ .+++.-|+++ +|+....+...+. ..+. .. .|+.++.+.+-|.+..++
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~d-----eAl~~~~~~~~lE---~~Al--~V-qI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFD-----EALKALHLGENLE---AAAL--NV-QILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChH-----HHHHHHhccchHH---HHHH--HH-HHHHHHHHHHHHHHHHHH
Confidence 334445555555554565555 5555666664 5655544422221 2233 22 677788888888888888
Q ss_pred HHHcCCCChHHHHHHHHHHHHh---hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC
Q psy4772 133 AITMNPANYTVWQYRREILKAL---NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 133 al~l~P~~~~aw~~r~~~l~~l---~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n 209 (235)
...++-+..- ..++..+.++ |....+|.-.|+...+..|..+...++.+.+...+|++++|...++.|+..++++
T Consensus 163 mq~ided~tL--tQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 163 MQQIDEDATL--TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HHccchHHHH--HHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 8888766543 3333333333 2247888888999999888889999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHhhcCCcccc
Q psy4772 210 YHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 210 ~~aw~~r~~~l~~l~~~~~~ 229 (235)
+.+..|...+-.++|++++.
T Consensus 241 petL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEV 260 (299)
T ss_pred HHHHHHHHHHHHHhCCChHH
Confidence 99999988888888988654
No 214
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.65 E-value=0.0064 Score=51.46 Aligned_cols=159 Identities=9% Similarity=-0.046 Sum_probs=120.2
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhh--HHHHHHHhcccccHHHHHHHHHHHHcCCCChH-
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWN--YLRGAVVNAGEKSERALALTADAITMNPANYT- 142 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~--~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~- 142 (235)
-++-|++.|....+.|+++ +|+..|+++....|-.+.+=. ..++.++.+.+++++|+...++-+.+.|.++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~-----~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYE-----EAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 4678999999999999875 799999999999998885321 23556677889999999999999999988876
Q ss_pred --HHHHHHHHHHHhh-------HhHHHHHHHHHHHHHhCCCChH---------------Hh--HHHHHHHHHcCCchHHH
Q psy4772 143 --VWQYRREILKALN-------KDLHQELKYIGEKIKENSKNYQ---------------VW--RHRQIIVEWMGEPDEEL 196 (235)
Q Consensus 143 --aw~~r~~~l~~l~-------~~~eeal~~~~~al~~~P~n~~---------------aw--~~r~~~l~~l~~~~~Al 196 (235)
+.+-+|.++...- ..-.+|+..++.+|++.|++.= +- ...|..+.+.|.+..|+
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 5666777654431 1246789999999999998752 22 22456677788899999
Q ss_pred HHHHHHHHhCCCChHH---hHHHHHHHhhcCCcccc
Q psy4772 197 ALTAAILAQDAKNYHA---WQHRQWVINLLDDDDRG 229 (235)
Q Consensus 197 ~~~~~ai~ldp~n~~a---w~~r~~~l~~l~~~~~~ 229 (235)
.-++.+++.-|+-.+. +..+..++..||.++.+
T Consensus 188 nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 188 NRFEEVLENYPDTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence 9999999988776554 44445555678877544
No 215
>KOG3081|consensus
Probab=97.64 E-value=0.0028 Score=53.91 Aligned_cols=123 Identities=10% Similarity=0.077 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHH--HHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHH
Q psy4772 87 VIQREIDYCRDKIQIAPKNESPWNYLRGA--VVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKY 164 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~~~~aw~~~~g~--il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~ 164 (235)
+++-|.+...+..+++.+..-.- ..-++ +-...++.++|.-.|+..-+..|..+...+..+-|...++ ++++|...
T Consensus 152 r~d~A~~~lk~mq~ided~tLtQ-LA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~-~~eeAe~l 229 (299)
T KOG3081|consen 152 RFDLAEKELKKMQQIDEDATLTQ-LAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG-RYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHHHccchHHHHHH-HHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc-CHHHHHHH
Confidence 44568888888888887765321 11112 2334567999999999999999999999999999999999 59999999
Q ss_pred HHHHHHhCCCChHHhHHHHHHHHHcCCchHHHH-HHHHHHHhCCCChH
Q psy4772 165 IGEKIKENSKNYQVWRHRQIIVEWMGEPDEELA-LTAAILAQDAKNYH 211 (235)
Q Consensus 165 ~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~-~~~~ai~ldp~n~~ 211 (235)
++.+|..+++++.+..++..+-..+|...+..+ .+...-..+|.++-
T Consensus 230 L~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 230 LEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 999999999999999999999999999887774 55566667887753
No 216
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.60 E-value=0.00044 Score=59.70 Aligned_cols=138 Identities=9% Similarity=0.102 Sum_probs=90.3
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc----hhhH-HHHHHHhcccc
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES----PWNY-LRGAVVNAGEK 122 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~----aw~~-~~g~il~~~~~ 122 (235)
++++|...|++| |.++...|++. +|.+.|.++....-+.-. +..+ ..+.++.+ .+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~-----~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~ 89 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWE-----KAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GD 89 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CH-----HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccc-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hC
Confidence 566776655554 55666666664 566666666544332221 1111 23344444 48
Q ss_pred cHHHHHHHHHHHHcC--CCC----hHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHhCCCCh------HHhHHHHHHHHHc
Q psy4772 123 SERALALTADAITMN--PAN----YTVWQYRREILKAL-NKDLHQELKYIGEKIKENSKNY------QVWRHRQIIVEWM 189 (235)
Q Consensus 123 ~~eAl~~~~~al~l~--P~~----~~aw~~r~~~l~~l-~~~~eeal~~~~~al~~~P~n~------~aw~~r~~~l~~l 189 (235)
+++|+.++++++.+. -+. ..++...|.++... + ++++|+++|++|++.....- ......+.++..+
T Consensus 90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~-d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG-DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 899999999999862 222 34666778888887 7 59999999999998643222 3567788899999
Q ss_pred CCchHHHHHHHHHHHhC
Q psy4772 190 GEPDEELALTAAILAQD 206 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ld 206 (235)
|+|++|++.|++++..-
T Consensus 169 ~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp T-HHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999998854
No 217
>KOG1130|consensus
Probab=97.58 E-value=7.1e-05 Score=66.99 Aligned_cols=182 Identities=10% Similarity=0.100 Sum_probs=125.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCch----hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh----CCCC--CchhhHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNN----SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI----APKN--ESPWNYLRGA 115 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~----~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l----~p~~--~~aw~~~~g~ 115 (235)
+|+....+.+|..||++-.++. .+|..+|.+++.+++|. +|+++-..=|.+ .-+- ..+-. ++|.
T Consensus 30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~-----kAl~yH~hDltlar~lgdklGEAKssg-NLGN 103 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYE-----KALKYHTHDLTLARLLGDKLGEAKSSG-NLGN 103 (639)
T ss_pred ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHH-----HHHhhhhhhHHHHHHhcchhccccccc-cccc
Confidence 4788999999999999988874 45678888888887764 677654332221 1111 12222 4789
Q ss_pred HHhcccccHHHHHHHHHHHHcC------CCChHHHHHHHHHHHHhhH-------------------hHHHHHHHHHHHHH
Q psy4772 116 VVNAGEKSERALALTADAITMN------PANYTVWQYRREILKALNK-------------------DLHQELKYIGEKIK 170 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l~------P~~~~aw~~r~~~l~~l~~-------------------~~eeal~~~~~al~ 170 (235)
++..+|.+++|+.|+.+-|.+. -.-.-|++++|.+|..-|+ .++.|.++|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877542 2345688999999988764 35667777777665
Q ss_pred hCCCCh------HHhHHHHHHHHHcCCchHHHHHHHHHHHhC------CCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 171 ENSKNY------QVWRHRQIIVEWMGEPDEELALTAAILAQD------AKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 171 ~~P~n~------~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld------p~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
+-.+.- .++-++|..++.+|+|..|+..-+.-+.+- ..--.|+.++|++.-++|.+.-|.-.|
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 443322 256667778888888988887655544432 223457788888888888886665443
No 218
>KOG0551|consensus
Probab=97.58 E-value=0.0009 Score=58.46 Aligned_cols=88 Identities=8% Similarity=0.177 Sum_probs=76.4
Q ss_pred hcHHHHHHHHHhHHhcCCCc----hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 47 NLFSDELSYIEGLISHDVRN----NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~----~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
.+|..|..+|.+.|+..-.+ +..|.||+.+...+|.|. .+|.+|.+++.++|.+..+. ++-+.|+..+++
T Consensus 95 Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyR-----s~l~Dcs~al~~~P~h~Ka~-~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 95 KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYR-----SALNDCSAALKLKPTHLKAY-IRGAKCLLELER 168 (390)
T ss_pred hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHhcCcchhhhh-hhhhHHHHHHHH
Confidence 46899999999999986554 567899999999999885 69999999999999999999 688899999999
Q ss_pred cHHHHHHHHHHHHcCCCC
Q psy4772 123 SERALALTADAITMNPAN 140 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~ 140 (235)
+.+|+..++..+.++-+.
T Consensus 169 ~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 169 FAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHhhhhhhhHHH
Confidence 999999888886654433
No 219
>KOG2796|consensus
Probab=97.57 E-value=0.0036 Score=53.39 Aligned_cols=159 Identities=10% Similarity=0.084 Sum_probs=109.7
Q ss_pred hcHHHHHHHHHhHHhcC-CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH----hCCCCCc--hhhHHHHHHHhc
Q psy4772 47 NLFSDELSYIEGLISHD-VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ----IAPKNES--PWNYLRGAVVNA 119 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~-P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~----l~p~~~~--aw~~~~g~il~~ 119 (235)
+.|.-++..+.+.++.+ |..+.....+|.+-++.|+-. .|-.+|+.+-+ ++.-... .. .+.+.++..
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k-----~a~~yf~~vek~~~kL~~~q~~~~V~-~n~a~i~lg 264 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIK-----TAEKYFQDVEKVTQKLDGLQGKIMVL-MNSAFLHLG 264 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHHHhhhhccchhHHHH-hhhhhheec
Confidence 56888999999999999 677888899999999998642 34444442222 2211111 11 123445555
Q ss_pred ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH---HhHHHHHHH-HHcCCchHH
Q psy4772 120 GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ---VWRHRQIIV-EWMGEPDEE 195 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~---aw~~r~~~l-~~l~~~~~A 195 (235)
.+.+-+|...++++++.||.++.+-++++.|+..+|+ ..+|++-++.++++.|..+. ..+++...+ ....+..+-
T Consensus 265 ~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~-l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Ys~~~~~ 343 (366)
T KOG2796|consen 265 QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK-LKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEYSRSMQK 343 (366)
T ss_pred ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH-HHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhhhhhhH
Confidence 6789999999999999999999999999999999995 99999999999999997643 334444443 222222233
Q ss_pred HHHHHHHHH-hCCCChHH
Q psy4772 196 LALTAAILA-QDAKNYHA 212 (235)
Q Consensus 196 l~~~~~ai~-ldp~n~~a 212 (235)
...+..++. ..|+++..
T Consensus 344 k~~l~~~ia~~~~d~f~~ 361 (366)
T KOG2796|consen 344 KQALLEAVAGKEGDSFNT 361 (366)
T ss_pred HHHHHHHHhccCCCcccc
Confidence 334444444 55665544
No 220
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.56 E-value=0.0014 Score=56.69 Aligned_cols=125 Identities=10% Similarity=0.087 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc-ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNA-GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIG 166 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~-~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~ 166 (235)
++.|-..|.+|++..+-+++.| ...+.+-.. .++.+.|...|+.+++..|.+...|..-...+..++ +.+.+...|+
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy-~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~-d~~~aR~lfe 94 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVY-VAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN-DINNARALFE 94 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHH-HHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC-cHHHHHHHHH
Confidence 4577788888886666678887 455555344 445555888999999888888888888888888888 4788888899
Q ss_pred HHHHhCCCCh---HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhH
Q psy4772 167 EKIKENSKNY---QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQ 214 (235)
Q Consensus 167 ~al~~~P~n~---~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~ 214 (235)
+++..-|... ..|......-.+.|+.+......+++.+.-|.+.....
T Consensus 95 r~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 95 RAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9888877666 57777777778888888888888888888888655443
No 221
>KOG1915|consensus
Probab=97.55 E-value=0.017 Score=53.03 Aligned_cols=182 Identities=14% Similarity=0.125 Sum_probs=120.6
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhh--cCCCC---HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINH--TTQFT---PEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE 121 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~--~~~~~---e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~ 121 (235)
..++.|-..|.-||..-|++-.--..++.+.+. -|+-. +..+.+---.|.+.++.||-++.+| +-.-.+....|
T Consensus 258 kE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW-fdylrL~e~~g 336 (677)
T KOG1915|consen 258 KEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW-FDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH-HHHHHHHHhcC
Confidence 456778888888999999886555555555443 23211 1122222245888999999999999 44445666678
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh---------HhHHHHHHHHHHHHHhCCCCh----HHhHHHHHHH--
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALN---------KDLHQELKYIGEKIKENSKNY----QVWRHRQIIV-- 186 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~---------~~~eeal~~~~~al~~~P~n~----~aw~~r~~~l-- 186 (235)
.-+.-.+.|++||.--|....--+.+..||.=++ ++.+.+...|+.+|++=|.-- ..|..-+...
T Consensus 337 ~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR 416 (677)
T KOG1915|consen 337 DKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR 416 (677)
T ss_pred CHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH
Confidence 8888889999999888876665555555554432 235566667777777666332 2333222222
Q ss_pred -------------------------------HHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 187 -------------------------------EWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 187 -------------------------------~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
.+++.++.....|++-|+-.|.|-.+|...+-+-..||+.+.+
T Consensus 417 q~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 417 QLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHH
Confidence 2233367777888999999999999999999888899988543
No 222
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.50 E-value=0.00018 Score=41.29 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=19.0
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
.+|+.+|.++..+|++++|+++++++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35556666666666666666666666666553
No 223
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0027 Score=59.17 Aligned_cols=128 Identities=13% Similarity=-0.055 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhCCCCCchhhHH-HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy4772 91 EIDYCRDKIQIAPKNESPWNYL-RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKI 169 (235)
Q Consensus 91 Al~~~~kal~l~p~~~~aw~~~-~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al 169 (235)
++..+..-+.++|.+++...-. +...+...+....+.-....++..||.+..+..+++..++..+..+.-+..+...+.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555566778888764211 233445567888888889999999999999999999988888765666666777799
Q ss_pred HhCCCChHHhHHH------HHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 170 KENSKNYQVWRHR------QIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 170 ~~~P~n~~aw~~r------~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
...|+|.+...++ +..+..+++..++.....++.++.|++++......+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 9999999988888 777788888888889999999999988665444333
No 224
>KOG1915|consensus
Probab=97.42 E-value=0.01 Score=54.39 Aligned_cols=149 Identities=12% Similarity=0.128 Sum_probs=110.6
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
+++..|-..+++||..+-.+...|..-+-+-+..++ +.-|-+.+++|+.+=|+--..| |.--.+-..+|...-|
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~-----vNhARNv~dRAvt~lPRVdqlW-yKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQ-----VNHARNVWDRAVTILPRVDQLW-YKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhh-----HhHHHHHHHHHHHhcchHHHHH-HHHHHHHHHhcccHHH
Confidence 456889999999999999999999888877766553 4578899999999999999999 6443333458999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
.+.|++-+...|+. .||..--..-.+-+ ..+.|...|++.+-.+|+ .+.|..-+..-.+.|...-+...|.+|++
T Consensus 161 RqiferW~~w~P~e-qaW~sfI~fElRyk-eieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 161 RQIFERWMEWEPDE-QAWLSFIKFELRYK-EIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHcCCCcH-HHHHHHHHHHHHhh-HHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999975 67765443333444 378888888888888875 56666666666666654444444444444
No 225
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.41 E-value=0.0016 Score=56.27 Aligned_cols=99 Identities=15% Similarity=0.071 Sum_probs=82.6
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
.......+.+..+.|...|.+|+...+..+++|..-+.+-..++++.+.|...|+++++..|.+...|..-...+..+++
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d 85 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND 85 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc
Confidence 34455555666899999999999777778999998888877766566669999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCCh
Q psy4772 192 PDEELALTAAILAQDAKNY 210 (235)
Q Consensus 192 ~~~Al~~~~~ai~ldp~n~ 210 (235)
.+.+...|++++..-|...
T Consensus 86 ~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 86 INNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHHHHHHHHHCCTSSCHH
T ss_pred HHHHHHHHHHHHHhcCchh
Confidence 9999999999999888777
No 226
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.022 Score=49.21 Aligned_cols=110 Identities=17% Similarity=0.187 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHH-----HHHHHHHhhHhHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQY-----RREILKALNKDLHQELKY 164 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~-----r~~~l~~l~~~~eeal~~ 164 (235)
+|...+..++..+|++..+- ..++.++...|+.++|...+.. .|.....=-. +-..+.+... -.....
T Consensus 152 ~a~~~~~~al~~~~~~~~~~-~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~~~~~l~a~i~ll~qaa~--~~~~~~ 224 (304)
T COG3118 152 EAAPLLKQALQAAPENSEAK-LLLAECLLAAGDVEAAQAILAA----LPLQAQDKAAHGLQAQIELLEQAAA--TPEIQD 224 (304)
T ss_pred hHHHHHHHHHHhCcccchHH-HHHHHHHHHcCChHHHHHHHHh----CcccchhhHHHHHHHHHHHHHHHhc--CCCHHH
Confidence 56666777777777776666 4566677777777666554433 2333222111 1122222221 122455
Q ss_pred HHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 165 IGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 165 ~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
+++.+..+|+++.+-+.++..+...|+.++|++.+=..+..|
T Consensus 225 l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 225 LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 666677777777777777777777777777776655555543
No 227
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.29 E-value=0.032 Score=49.23 Aligned_cols=157 Identities=10% Similarity=0.080 Sum_probs=108.0
Q ss_pred HHHHHhHHhcCCCchhHhhhHHHHHhhcCCC-------CHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 53 LSYIEGLISHDVRNNSAWTQRYFVINHTTQF-------TPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 53 l~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~-------~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
..-+++.++.+|.+.++|..........-.. ..+..+.-+..+.+||+.+|.+...|. ..-.+..+....++
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l-~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLL-GYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHhCCHHH
Confidence 3567899999999999999888776654332 124567788999999999999998883 44355556667788
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHH-hhH-hHHHHHHHHHHHHH-------hC----C-------CChHHhHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKA-LNK-DLHQELKYIGEKIK-------EN----S-------KNYQVWRHRQII 185 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~-l~~-~~eeal~~~~~al~-------~~----P-------~n~~aw~~r~~~ 185 (235)
..+-+++++..+|.++..|...-..... ... .+++.+..|.++|+ .. + .-......+...
T Consensus 84 l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 8899999999999999999865433333 210 13344444444333 21 0 011233444555
Q ss_pred HHHcCCchHHHHHHHHHHHhCCCCh
Q psy4772 186 VEWMGEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 186 l~~l~~~~~Al~~~~~ai~ldp~n~ 210 (235)
+...|-.+.|+..++-.++++---+
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHHcCCc
Confidence 6778889999999999999875333
No 228
>PRK10941 hypothetical protein; Provisional
Probab=97.24 E-value=0.0023 Score=54.99 Aligned_cols=76 Identities=11% Similarity=0.021 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 144 WQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
..+.+.++.+.+ +++.|+.+.++++..+|+++.-|-.||.++.++|.+..|+..++.-++.-|+++.+-.-+..+-
T Consensus 184 l~nLK~~~~~~~-~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEK-QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 345566666777 5999999999999999999999999999999999999999999999999999999865554443
No 229
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.23 E-value=0.00067 Score=38.80 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC
Q psy4772 143 VWQYRREILKALNKDLHQELKYIGEKIKENS 173 (235)
Q Consensus 143 aw~~r~~~l~~l~~~~eeal~~~~~al~~~P 173 (235)
+|+.+|.++..+| ++++|+.+++++++++|
T Consensus 3 ~~~~lg~~y~~~~-~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLG-DYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Confidence 4555555555555 35555555555555555
No 230
>KOG2610|consensus
Probab=97.19 E-value=0.0069 Score=53.29 Aligned_cols=156 Identities=8% Similarity=-0.021 Sum_probs=106.9
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh-CCCCCchhhHHHHH---HHhccccc
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI-APKNESPWNYLRGA---VVNAGEKS 123 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l-~p~~~~aw~~~~g~---il~~~~~~ 123 (235)
.+-+|-...+++|.-.|.+..+|..--.+.+..|+.. .-...+.|++-. ||..|-- .|..|. .+.+.|-|
T Consensus 118 ~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~-----~~k~ai~kIip~wn~dlp~~-sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 118 KHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQI-----GKKNAIEKIIPKWNADLPCY-SYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchh-----hhhhHHHHhccccCCCCcHH-HHHHHHHHhhHHHhccc
Confidence 3456666778888888888888877777777777653 234566777776 6665432 244443 45667889
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC----CChHHhHHHHHHHHHcCCchHHHHHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENS----KNYQVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P----~n~~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
.+|-+.-++++++||.+..|-+.++-+++--++ +.++++|..+.-..=- .-.+-|-|-+..+..-+.|+.|++.|
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r-~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGR-HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcch-hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999999999999999999999999888885 7888888766432111 11123344455555557899999998
Q ss_pred HHHHH--hCCCCh
Q psy4772 200 AAILA--QDAKNY 210 (235)
Q Consensus 200 ~~ai~--ldp~n~ 210 (235)
++-|- +...|+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 87654 344444
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.07 E-value=0.033 Score=50.00 Aligned_cols=162 Identities=12% Similarity=0.125 Sum_probs=97.5
Q ss_pred hcHHHHHHHHHhHHhc----CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHH-HHHhCCCCCchhhHHHHHHHhcc-
Q psy4772 47 NLFSDELSYIEGLISH----DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRD-KIQIAPKNESPWNYLRGAVVNAG- 120 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~----~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~k-al~l~p~~~~aw~~~~g~il~~~- 120 (235)
.+|+.=+.+++..=.+ -++.+.+-++.|.++.+..+ ++..++|++.+.. +....+.++..+ ...|.|+..+
T Consensus 155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~--~gdre~Al~il~~~l~~~~~~~~d~~-gL~GRIyKD~~ 231 (374)
T PF13281_consen 155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNK--PGDREKALQILLPVLESDENPDPDTL-GLLGRIYKDLF 231 (374)
T ss_pred hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhccc--CCCHHHHHHHHHHHHhccCCCChHHH-HHHHHHHHHHH
Confidence 3455555555555555 45566777778888877322 1233578888777 555666667777 4677776542
Q ss_pred --------cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHH-------HHHHH----hCCCChHHhHH
Q psy4772 121 --------EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYI-------GEKIK----ENSKNYQVWRH 181 (235)
Q Consensus 121 --------~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~-------~~al~----~~P~n~~aw~~ 181 (235)
...++|+..|.++.+++|+.+.. .|.+.++.-.|..++...+.- ..+.+ -.-.+++..-.
T Consensus 232 ~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G-IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~AT 310 (374)
T PF13281_consen 232 LESNFTDRESLDKAIEWYRKGFEIEPDYYSG-INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVAT 310 (374)
T ss_pred HHcCccchHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 23578888888888888655443 444555555553222211111 11111 12355555555
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
+.-+..-.|+++++.+++++++.+.|. +|+-
T Consensus 311 l~Ea~vL~~d~~ka~~a~e~~~~l~~~---~W~l 341 (374)
T PF13281_consen 311 LLEASVLAGDYEKAIQAAEKAFKLKPP---AWEL 341 (374)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCc---chhH
Confidence 666667788999999999999988654 5553
No 232
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.04 E-value=0.037 Score=49.62 Aligned_cols=158 Identities=5% Similarity=-0.043 Sum_probs=109.3
Q ss_pred HhHHhcCCCchhHhhhHHHHHhhcCCCCH--HHHHHHHHHHHHHHH--h-----CCCCC---------------chhhHH
Q psy4772 57 EGLISHDVRNNSAWTQRYFVINHTTQFTP--EVIQREIDYCRDKIQ--I-----APKNE---------------SPWNYL 112 (235)
Q Consensus 57 ~~aL~~~P~~~~a~~~~g~~l~~~~~~~e--~~~~~Al~~~~kal~--l-----~p~~~---------------~aw~~~ 112 (235)
-..|+.+|.+.+++...+.|...+|+.+. +-+++|+=.|+.++- . ++... .+. ++
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal-~r 108 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL-FR 108 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH-HH
Confidence 35678999999999999999999998764 357777777765442 1 22222 122 23
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCC-ChHHHH-HHHHHHHHhhHhHHHHHHHHHHHHHhCCCC-----hHHhHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPA-NYTVWQ-YRREILKALNKDLHQELKYIGEKIKENSKN-----YQVWRHRQII 185 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~-~~~aw~-~r~~~l~~l~~~~eeal~~~~~al~~~P~n-----~~aw~~r~~~ 185 (235)
....+.++|-+..|++.++-++.+||. ++..-. ..-..-.+-+ .++-=+.+++.......++ +..-+.++.+
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~-~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSR-QYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALA 187 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHH
Confidence 345566788999999999999999999 665433 3333333334 3666666776655532222 2455677888
Q ss_pred HHHcCCc---------------hHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 186 VEWMGEP---------------DEELALTAAILAQDAKNYHAWQHR 216 (235)
Q Consensus 186 l~~l~~~---------------~~Al~~~~~ai~ldp~n~~aw~~r 216 (235)
+..+++- ++|-..+.+|+...|.-.......
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~ 233 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDK 233 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888888 899999999999998776654443
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.03 E-value=0.03 Score=51.93 Aligned_cols=157 Identities=10% Similarity=0.012 Sum_probs=108.8
Q ss_pred hcHHHHHHHHHhHHhcCCCchhH-------hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSA-------WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA 119 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a-------~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~ 119 (235)
|+-+.++..+.++.+ .++--.+ +++.+.....--+-.+...+.|.+......+.-|+..-.. +..|.+...
T Consensus 202 gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl-~~~gR~~~~ 279 (468)
T PF10300_consen 202 GDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL-FFEGRLERL 279 (468)
T ss_pred CcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHH
Confidence 456889999988877 4433222 2333322221100022345678889999999999866554 679999999
Q ss_pred ccccHHHHHHHHHHHHcCCCCh----HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHH-HHHHHHHcCCc--
Q psy4772 120 GEKSERALALTADAITMNPANY----TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH-RQIIVEWMGEP-- 192 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~----~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~-r~~~l~~l~~~-- 192 (235)
.|+.++|++.+++++....+-. -.++.+++++.-+. +|++|..++.++.+.+.-+...+.+ .|-++..+++.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~-~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~ 358 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH-DWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEE 358 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchh
Confidence 9999999999999885333322 35667899998888 5999999999999977665444433 55666778887
Q ss_pred -----hHHHHHHHHHHHhC
Q psy4772 193 -----DEELALTAAILAQD 206 (235)
Q Consensus 193 -----~~Al~~~~~ai~ld 206 (235)
++|.+++.++-.+-
T Consensus 359 ~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 359 AKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 77777777775543
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.01 E-value=0.016 Score=44.61 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
.+....+..+...| .+++++..+++++..+|-+-.+|..+..++...|+..+|+..|++..
T Consensus 63 ~~~~~l~~~~~~~~-~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAG-DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44555666777778 48999999999999999999999999999999999999998877763
No 235
>KOG1070|consensus
Probab=96.96 E-value=0.046 Score=55.75 Aligned_cols=172 Identities=12% Similarity=0.105 Sum_probs=82.7
Q ss_pred hhHhhhhhhhhcHHHHHHHHHhHHhc-CCCchhHhhhHHHHHhhcCC-CC-HHHHHHHHHHHHHHHHhCCCCCchhhHHH
Q psy4772 37 VVAIAYSQKCNLFSDELSYIEGLISH-DVRNNSAWTQRYFVINHTTQ-FT-PEVIQREIDYCRDKIQIAPKNESPWNYLR 113 (235)
Q Consensus 37 ~~~~~y~~~~~~~~~Al~~~~~aL~~-~P~~~~a~~~~g~~l~~~~~-~~-e~~~~~Al~~~~kal~l~p~~~~aw~~~~ 113 (235)
+-.++|-...+..++|-+..++||.. |+.-.+=..|.-.++.++.. |- ++ .-...|.+|.+.. +-+..+. .+
T Consensus 1462 I~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ee---sl~kVFeRAcqyc-d~~~V~~-~L 1536 (1710)
T KOG1070|consen 1462 IRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEE---SLKKVFERACQYC-DAYTVHL-KL 1536 (1710)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHH---HHHHHHHHHHHhc-chHHHHH-HH
Confidence 44888888888889999999999875 45444333333333333221 11 10 0011112221111 1112221 23
Q ss_pred HHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC--ChHHhHHHHHHHHHcCC
Q psy4772 114 GAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK--NYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~--n~~aw~~r~~~l~~l~~ 191 (235)
.-+|...+++++|.+.++..++..-.-...|...+..+.+..+ -+.|...+.+|++.-|+ +......-+.+-++.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne-~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE-AEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH-HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 3445555555555555555555544455555555555544442 34445555555555555 33333333444445555
Q ss_pred chHHHHHHHHHHHhCCCChHHhH
Q psy4772 192 PDEELALTAAILAQDAKNYHAWQ 214 (235)
Q Consensus 192 ~~~Al~~~~~ai~ldp~n~~aw~ 214 (235)
.++....|+..+..+|+--..|.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~ 1638 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWS 1638 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHH
Confidence 55555555555555555555543
No 236
>KOG4340|consensus
Probab=96.96 E-value=0.011 Score=51.24 Aligned_cols=133 Identities=9% Similarity=-0.019 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHH-
Q psy4772 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKY- 164 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~- 164 (235)
.+++.||++..--.+.+|++-.+. ..+|.|+....++.+|-.||++.-.+.|+..+--.+-+..+.+-+. +.+|+..
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgL-SlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i-~ADALrV~ 101 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGL-SLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI-YADALRVA 101 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc-cHHHHHHH
Confidence 456789999999999999999999 5899999999999999999999999999998887777777776653 3443332
Q ss_pred -----------------------------HHHHHHhCC--CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHh
Q psy4772 165 -----------------------------IGEKIKENS--KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAW 213 (235)
Q Consensus 165 -----------------------------~~~al~~~P--~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw 213 (235)
++.+++.-| +.....++.|-++.+-|.+++|++-|+.|++.---++..-
T Consensus 102 ~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllA 181 (459)
T KOG4340|consen 102 FLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLA 181 (459)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhH
Confidence 233444445 4556778888888999999999999999999876666665
Q ss_pred HHHHHHH
Q psy4772 214 QHRQWVI 220 (235)
Q Consensus 214 ~~r~~~l 220 (235)
++.+.+.
T Consensus 182 YniALaH 188 (459)
T KOG4340|consen 182 YNLALAH 188 (459)
T ss_pred HHHHHHH
Confidence 5555544
No 237
>KOG1310|consensus
Probab=96.95 E-value=0.0016 Score=60.09 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=68.6
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERAL 127 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl 127 (235)
....|+..|.++++.-|.....+.+|+.++++.+=. ++.--|+.+|.+++++||....+| ++++.++..++++.+|+
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~--~d~~~AlrDch~Alrln~s~~kah-~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR--GDSYLALRDCHVALRLNPSIQKAH-FRLARALNELTRYLEAL 465 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc--ccHHHHHHhHHhhccCChHHHHHH-HHHHHHHHHHhhHHHhh
Confidence 357788888888888888888888888877776522 233357778888888888888888 67778888888888888
Q ss_pred HHHHHHHHcCCCChH
Q psy4772 128 ALTADAITMNPANYT 142 (235)
Q Consensus 128 ~~~~~al~l~P~~~~ 142 (235)
++-..+....|.+..
T Consensus 466 ~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 466 SCHWALQMSFPTDVA 480 (758)
T ss_pred hhHHHHhhcCchhhh
Confidence 877777777775544
No 238
>KOG2396|consensus
Probab=96.91 E-value=0.045 Score=50.43 Aligned_cols=91 Identities=13% Similarity=0.161 Sum_probs=68.2
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc-ccHHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE-KSERALA 128 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~-~~~eAl~ 128 (235)
..-...|+.|+...|.++..|..-..--...+-+. +--..|.++|.++|+++..|.+ -+.=....+ ..+.|..
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~-----~v~ki~~~~l~~Hp~~~dLWI~-aA~wefe~n~ni~saRa 161 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYG-----EVKKIFAAMLAKHPNNPDLWIY-AAKWEFEINLNIESARA 161 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchh-----HHHHHHHHHHHhCCCCchhHHh-hhhhHHhhccchHHHHH
Confidence 56778999999999999999976543222222222 3347899999999999999954 222233333 3899999
Q ss_pred HHHHHHHcCCCChHHHHH
Q psy4772 129 LTADAITMNPANYTVWQY 146 (235)
Q Consensus 129 ~~~~al~l~P~~~~aw~~ 146 (235)
.+.+.|+.+|+++..|..
T Consensus 162 lflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 162 LFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred HHHHHhhcCCCChHHHHH
Confidence 999999999999999975
No 239
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.87 E-value=0.0037 Score=35.14 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 143 VWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 143 aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
|++..|.++..+|+ +++|+..++++++.+|++
T Consensus 2 a~~~~a~~~~~~g~-~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGD-YDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHHHHHHCcCC
Confidence 55666666666663 666666666666666653
No 240
>KOG3824|consensus
Probab=96.86 E-value=0.0023 Score=55.64 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREI 150 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~ 150 (235)
++|...|..|+.+.|.++.+. ...|.+....+..-+|-.||-+||.+.|.+..|+.+|...
T Consensus 133 ekA~~lfeHAlalaP~~p~~L-~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 133 EKAMTLFEHALALAPTNPQIL-IEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHhcCCCCHHHH-HHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 477788888888888888887 4677777777777788888888888888888888877654
No 241
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.85 E-value=0.038 Score=48.75 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=83.6
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHhccc------------ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHH
Q psy4772 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGE------------KSERALALTADAITMNPANYTVWQYRREILKALNKDLH 159 (235)
Q Consensus 92 l~~~~kal~l~p~~~~aw~~~~g~il~~~~------------~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~e 159 (235)
...+++.++-+|.+..+| ..........- ..+.-+..+++||+.+|++...+..+-.+..++. .-+
T Consensus 5 ~~el~~~v~~~P~di~~W-l~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~-~~~ 82 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAW-LELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW-DSE 82 (321)
T ss_pred HHHHHHHHHhCcccHHHH-HHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHH
Confidence 356899999999999999 45533322221 1467789999999999999999988777777776 467
Q ss_pred HHHHHHHHHHHhCCCChHHhHHHHHHHHH-cCC--chHHHHHHHHHHH
Q psy4772 160 QELKYIGEKIKENSKNYQVWRHRQIIVEW-MGE--PDEELALTAAILA 204 (235)
Q Consensus 160 eal~~~~~al~~~P~n~~aw~~r~~~l~~-l~~--~~~Al~~~~~ai~ 204 (235)
+-..-+++++..+|.++..|...-..... ... +.+-+..|.++|.
T Consensus 83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 77888999999999999999976655544 333 4566666666655
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.85 E-value=0.022 Score=52.44 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHH-----HHhcccccHHHHHHHHHHHHcCC---C---ChHHH------------H
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGA-----VVNAGEKSERALALTADAITMNP---A---NYTVW------------Q 145 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~-----il~~~~~~~eAl~~~~~al~l~P---~---~~~aw------------~ 145 (235)
++.++.-.+||+++|+++.||. .++. +......+++|++.-+..+..+. . ....+ .
T Consensus 185 ~aRIkaA~eALei~pdCAdAYI-LLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~Kr 263 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYI-LLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKR 263 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHh-hcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHH
Confidence 4667888999999999999994 4433 11222234555555555554432 1 11122 2
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCC--ChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC-CCChHHhHHHHHHH
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSK--NYQVWRHRQIIVEWMGEPDEELALTAAILAQD-AKNYHAWQHRQWVI 220 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~--n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld-p~n~~aw~~r~~~l 220 (235)
..+.|..++|+ ..||++.+...++.+|. +.....++.-++..++.|.++-..+.+-=++. |+ -.+|+|=+-++
T Consensus 264 RLAmCarklGr-~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk-SAti~YTaALL 339 (539)
T PF04184_consen 264 RLAMCARKLGR-LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK-SATICYTAALL 339 (539)
T ss_pred HHHHHHHHhCC-hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc-hHHHHHHHHHH
Confidence 35788888995 89999999999998885 56688999999999999998888877753332 33 34566655555
No 243
>KOG1310|consensus
Probab=96.81 E-value=0.0083 Score=55.53 Aligned_cols=90 Identities=17% Similarity=0.079 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc---cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHH
Q psy4772 85 PEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG---EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQE 161 (235)
Q Consensus 85 e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~---~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eea 161 (235)
+..+-.|+..|.++++.-|.....+. +++.++.++ |..--||..+-.++++||....||+.++.++..|++ +.+|
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~-nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r-~~ea 464 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLE-NRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR-YLEA 464 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHH-hHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh-HHHh
Confidence 44566799999999999999998884 676776663 677889999999999999999999999999999995 9999
Q ss_pred HHHHHHHHHhCCCCh
Q psy4772 162 LKYIGEKIKENSKNY 176 (235)
Q Consensus 162 l~~~~~al~~~P~n~ 176 (235)
+.|-..+...+|.+.
T Consensus 465 l~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 465 LSCHWALQMSFPTDV 479 (758)
T ss_pred hhhHHHHhhcCchhh
Confidence 999999999999664
No 244
>PRK10941 hypothetical protein; Provisional
Probab=96.81 E-value=0.0095 Score=51.24 Aligned_cols=71 Identities=17% Similarity=0.100 Sum_probs=63.6
Q ss_pred HHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 115 AVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 115 ~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.++.+.++++.|+.+.+.++.++|+++.-|.-||.++.+|| -+..|+..++..++.-|+.+.+-.-+..+.
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~-c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLD-CEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 45566789999999999999999999999999999999999 599999999999999999998877665543
No 245
>KOG2610|consensus
Probab=96.80 E-value=0.023 Score=50.11 Aligned_cols=121 Identities=8% Similarity=-0.062 Sum_probs=69.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHc-CCCCh---HHHHHHH
Q psy4772 73 RYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITM-NPANY---TVWQYRR 148 (235)
Q Consensus 73 ~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l-~P~~~---~aw~~r~ 148 (235)
.+.++...|++- +|-...+|+|.-.|.+--+|.+ .-.++..+|+.......+++++-. ||+-+ .+.-..+
T Consensus 109 ~aai~~~~g~~h-----~a~~~wdklL~d~PtDlla~kf-sh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmya 182 (491)
T KOG2610|consen 109 KAAILWGRGKHH-----EAAIEWDKLLDDYPTDLLAVKF-SHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYA 182 (491)
T ss_pred hHHHhhcccccc-----HHHHHHHHHHHhCchhhhhhhh-hhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHH
Confidence 334444445443 2334456666666666666643 345666666666666666666655 55542 2233344
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHH
Q psy4772 149 EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTA 200 (235)
Q Consensus 149 ~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~ 200 (235)
..+..+| .+.+|-+.-++++++||.+..+-+.++-++.-.+++.++.++-.
T Consensus 183 FgL~E~g-~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 183 FGLEECG-IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hhHHHhc-cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 5555666 36666666666666666666666666666666666666665543
No 246
>KOG1941|consensus
Probab=96.78 E-value=0.015 Score=51.72 Aligned_cols=161 Identities=13% Similarity=0.136 Sum_probs=112.8
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC-----chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE-----SPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~-----~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
.+++.+++.......+| .+++.+....+.+-...+ .+. ..+|.++..++.++++|+.|++|+++...+.
T Consensus 83 ~ea~lnlar~~e~l~~f-----~kt~~y~k~~l~lpgt~~~~~~gq~~-l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~ 156 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEF-----HKTISYCKTCLGLPGTRAGQLGGQVS-LSMGNAHLGLSVFQKALESFEKALRYAHNND 156 (518)
T ss_pred HHHHHHHHHHHHHHHHh-----hhHHHHHHHHhcCCCCCcccccchhh-hhHHHHhhhHHHHHHHHHHHHHHHHHhhccC
Confidence 35666666666665554 478888888887766555 233 2356777778889999999999998755544
Q ss_pred H------HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC----CCh------HHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 142 T------VWQYRREILKALNKDLHQELKYIGEKIKENS----KNY------QVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 142 ~------aw~~r~~~l~~l~~~~eeal~~~~~al~~~P----~n~------~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
+ ++..+|-.+-.+. ++++|+-+..+|.++-. ++. .+.+|++..+..+|+...|.++++.|.++
T Consensus 157 D~~LElqvcv~Lgslf~~l~-D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 157 DAMLELQVCVSLGSLFAQLK-DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred CceeeeehhhhHHHHHHHHH-hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3 5566788888887 68999999999887543 222 36778888899999999999999998654
Q ss_pred --CCCChH----HhHHHHHHHhhcCCccccccccc
Q psy4772 206 --DAKNYH----AWQHRQWVINLLDDDDRGVLEYE 234 (235)
Q Consensus 206 --dp~n~~----aw~~r~~~l~~l~~~~~~~~~~~ 234 (235)
...|.. ...-.+-++-..|+...++.-|+
T Consensus 236 al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 236 ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 333332 22334444566777777776664
No 247
>KOG2047|consensus
Probab=96.66 E-value=0.13 Score=48.83 Aligned_cols=195 Identities=12% Similarity=0.131 Sum_probs=130.2
Q ss_pred cccchhhhhccCCCCCCCCCCchhHhhhhh---hhhcHHHHHHHHHhHHhcCCCc----hhHhhhHHHHHhhcCCCCHHH
Q psy4772 15 YYKNREEWKDLRPIPQDDGPTPVVAIAYSQ---KCNLFSDELSYIEGLISHDVRN----NSAWTQRYFVINHTTQFTPEV 87 (235)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~~Al~~~~~aL~~~P~~----~~a~~~~g~~l~~~~~~~e~~ 87 (235)
+=-+.+++..|.|-.+ +|....+-..|+. ..|+.++|-..|+++.+++=+. +.+|..-|-.-....+
T Consensus 367 i~tyteAv~~vdP~ka-~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~----- 440 (835)
T KOG2047|consen 367 INTYTEAVKTVDPKKA-VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN----- 440 (835)
T ss_pred HHHHHHHHHccCcccC-CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh-----
Confidence 3334567888998887 5566555555664 4578899999999999997665 4666666644443333
Q ss_pred HHHHHHHHHHHHHhCCCC-------------------CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKN-------------------ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~-------------------~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~ 148 (235)
++.|+.....|.-. |.. ...|. .........|-++.-...|+++|.+.---++.--+-+
T Consensus 441 ~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs-~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA 518 (835)
T KOG2047|consen 441 FEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWS-MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA 518 (835)
T ss_pred HHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34666666665542 222 12442 3344455567777777888888888888888888888
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHhC--CCChHHhHHHH-HHHHHcC--CchHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 149 EILKALNKDLHQELKYIGEKIKEN--SKNYQVWRHRQ-IIVEWMG--EPDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 149 ~~l~~l~~~~eeal~~~~~al~~~--P~n~~aw~~r~-~~l~~l~--~~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
..++.-. .|+++.+.|++-|.++ |.-+..|+--- ....+.| +.+.|.++|++|++.=|-...=..|+.+
T Consensus 519 mfLEeh~-yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlY 592 (835)
T KOG2047|consen 519 MFLEEHK-YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLY 592 (835)
T ss_pred HHHHhhH-HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8888877 4888888888877765 56777887533 3334444 3688888888888877644443344433
No 248
>KOG2396|consensus
Probab=96.64 E-value=0.015 Score=53.48 Aligned_cols=92 Identities=13% Similarity=0.204 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEK 168 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~a 168 (235)
.+=+..|..|+..-+.+...| ..-..-..+.+.+.+--..|.++|.++|+++..|..-+.=....+...+.|...+.+.
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW-~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLW-LSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 445688999999999999999 4442223334558999999999999999999999998887777775689999999999
Q ss_pred HHhCCCChHHhHH
Q psy4772 169 IKENSKNYQVWRH 181 (235)
Q Consensus 169 l~~~P~n~~aw~~ 181 (235)
|+.+|+++..|..
T Consensus 167 LR~npdsp~Lw~e 179 (568)
T KOG2396|consen 167 LRFNPDSPKLWKE 179 (568)
T ss_pred hhcCCCChHHHHH
Confidence 9999999998864
No 249
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.63 E-value=0.17 Score=44.21 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=85.9
Q ss_pred CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC---CchhhHHHHHHHhcccccHHHHHHHHHHHHc-CC
Q psy4772 63 DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN---ESPWNYLRGAVVNAGEKSERALALTADAITM-NP 138 (235)
Q Consensus 63 ~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~---~~aw~~~~g~il~~~~~~~eAl~~~~~al~l-~P 138 (235)
.......|...+.+....|++. -|...+.++...++.. ...+.+..+.++...|+..+|+...+..+.. ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~-----~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQ-----LALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcH-----HHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 5566677777777777777774 5677777777765322 2233245567788888888888888777771 11
Q ss_pred CC---------------------------------hHHHHHHHHHHHHh------hHhHHHHHHHHHHHHHhCCCChHHh
Q psy4772 139 AN---------------------------------YTVWQYRREILKAL------NKDLHQELKYIGEKIKENSKNYQVW 179 (235)
Q Consensus 139 ~~---------------------------------~~aw~~r~~~l~~l------~~~~eeal~~~~~al~~~P~n~~aw 179 (235)
+. ..++..+|.-...+ + ..++++..|.++++.+|....+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~k~~ 295 (352)
T PF02259_consen 217 KNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSE-SSDEILKYYKEATKLDPSWEKAW 295 (352)
T ss_pred hccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccc-cHHHHHHHHHHHHHhChhHHHHH
Confidence 11 11233333333333 2 24566777777777777777777
Q ss_pred HHHHHHHHHcCC-----------------chHHHHHHHHHHHhCCC
Q psy4772 180 RHRQIIVEWMGE-----------------PDEELALTAAILAQDAK 208 (235)
Q Consensus 180 ~~r~~~l~~l~~-----------------~~~Al~~~~~ai~ldp~ 208 (235)
++.|.....+-. ...|+..|-+++...++
T Consensus 296 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 296 HSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 777766644321 12466666667766666
No 250
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.52 E-value=0.033 Score=41.27 Aligned_cols=86 Identities=13% Similarity=0.125 Sum_probs=41.9
Q ss_pred cccccHHHHHHHHHHHHcCCCChHHH---HHHHHHHHHhhH----------hHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 119 AGEKSERALALTADAITMNPANYTVW---QYRREILKALNK----------DLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 119 ~~~~~~eAl~~~~~al~l~P~~~~aw---~~r~~~l~~l~~----------~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
..|++-+||+..+.++...+++..+| ...|.++..+.. .+-.+++++.++..+.|..+...+.+|.-
T Consensus 8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~ 87 (111)
T PF04781_consen 8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ 87 (111)
T ss_pred HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence 34444445555555554444444322 122444444431 13345556666666666665555555554
Q ss_pred HHHcCCchHHHHHHHHHHH
Q psy4772 186 VEWMGEPDEELALTAAILA 204 (235)
Q Consensus 186 l~~l~~~~~Al~~~~~ai~ 204 (235)
+....-|.+++.-.++++.
T Consensus 88 l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 88 LGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hhhHHHHHHHHHHHHHHhc
Confidence 4444445555555555554
No 251
>KOG3824|consensus
Probab=96.51 E-value=0.0055 Score=53.31 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=61.4
Q ss_pred HhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 117 VNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 117 l~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
..+.|+.++|...|+.|+.+.|.+++++...|...+.-+ +.-+|-.||-+|+.++|.|..|..+|....
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~-~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHN-EIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh-hhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 345688999999999999999999999999998888776 588999999999999999999999987543
No 252
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.48 E-value=0.0047 Score=33.21 Aligned_cols=31 Identities=10% Similarity=0.159 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 143 VWQYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 143 aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
+|+.+|.++..+++ +++|+.+++++++++|.
T Consensus 3 ~~~~~a~~~~~~~~-~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGD-YDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHccCCC
Confidence 45555555555552 55555555555555543
No 253
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.47 E-value=0.0096 Score=38.23 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 144 WQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
.++++..+.++| ++++|+.+++++|+.+|.|.++-.-+.
T Consensus 4 lY~lAig~ykl~-~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 4 LYYLAIGHYKLG-EYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 344555555555 255555555555555555555544433
No 254
>KOG1070|consensus
Probab=96.46 E-value=0.11 Score=53.24 Aligned_cols=172 Identities=14% Similarity=0.088 Sum_probs=127.7
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH-hCCCCCchhhHHHHHHHhcc----cccH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ-IAPKNESPWNYLRGAVVNAG----EKSE 124 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~-l~p~~~~aw~~~~g~il~~~----~~~~ 124 (235)
.+..+.|++.+.-+|..+-.|..--.-....++ +++|-....+||. +|++-..-- .+.-.++.++ |.-+
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsE-----iekAR~iaerAL~tIN~REeeEK-LNiWiA~lNlEn~yG~ee 1514 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSE-----IEKARKIAERALKTINFREEEEK-LNIWIAYLNLENAYGTEE 1514 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhh-----hHHHHHHHHHHhhhCCcchhHHH-HHHHHHHHhHHHhhCcHH
Confidence 346778999999999999999776655555554 4577788888775 556554322 1121233332 3334
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
.-.+.|++|...+ +-+.++..+..+|..-++ +.+|.+.++.-++..-.....|...+..+.+...-+.|...+.+|+.
T Consensus 1515 sl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek-~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1515 SLKKVFERACQYC-DAYTVHLKLLGIYEKSEK-NDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHHHHhc-chHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4556788887765 456788899999999995 89999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHhHHHHHHH--hhcCCcccc
Q psy4772 205 QDAKNYHAWQHRQWVI--NLLDDDDRG 229 (235)
Q Consensus 205 ldp~n~~aw~~r~~~l--~~l~~~~~~ 229 (235)
.-|+..|.=.-..++. -..|+-.+|
T Consensus 1593 ~lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCchhh
Confidence 9999666655555554 345555443
No 255
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.46 E-value=0.0052 Score=35.91 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=15.1
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
+|.++|.++..+|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666666666666666633
No 256
>KOG2047|consensus
Probab=96.44 E-value=0.25 Score=47.08 Aligned_cols=155 Identities=13% Similarity=0.208 Sum_probs=108.2
Q ss_pred HhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHH-HHhCCCCC-----chhhHHHHHHHhcccccHHHHHHH
Q psy4772 57 EGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDK-IQIAPKNE-----SPWNYLRGAVVNAGEKSERALALT 130 (235)
Q Consensus 57 ~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~ka-l~l~p~~~-----~aw~~~~g~il~~~~~~~eAl~~~ 130 (235)
+-+|+.||.+.+-|..|-.++.. +.. +-+..|..| ...+|+-+ ..| ...|..+...|..+.|...|
T Consensus 339 sVlLRQn~~nV~eW~kRV~l~e~--~~~-----~~i~tyteAv~~vdP~ka~Gs~~~Lw-~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKLYEG--NAA-----EQINTYTEAVKTVDPKKAVGSPGTLW-VEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred HHHHhcCCccHHHHHhhhhhhcC--ChH-----HHHHHHHHHHHccCcccCCCChhhHH-HHHHHHHHhcCcHHHHHHHH
Confidence 45778899999999988776653 222 344555544 45677654 456 46788888889999999999
Q ss_pred HHHHHcCCCCh----HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC------------------CChHHhHHHHHHHHH
Q psy4772 131 ADAITMNPANY----TVWQYRREILKALNKDLHQELKYIGEKIKENS------------------KNYQVWRHRQIIVEW 188 (235)
Q Consensus 131 ~~al~l~P~~~----~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P------------------~n~~aw~~r~~~l~~ 188 (235)
++++..+-+-. .+|..-+..-.+-. .++.|+.+.++|...=. ++...|...+.+...
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~-~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHE-NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhh-hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 99998875544 45666554444444 48888888888765211 233477777788888
Q ss_pred cCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 189 MGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 189 l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+|-++.-...|+++|.+.---+..-.|.+++|
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~NyAmfL 521 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIINYAMFL 521 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888888888888888777777766666665
No 257
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.39 E-value=0.23 Score=44.71 Aligned_cols=155 Identities=13% Similarity=0.084 Sum_probs=103.8
Q ss_pred hhhccCCCCCCCC-CCchh--Hhhhhh-h---hhcHHHHHHHHHh-HHhcCCCchhHhhhHHHHHhhc----CCCCHHHH
Q psy4772 21 EWKDLRPIPQDDG-PTPVV--AIAYSQ-K---CNLFSDELSYIEG-LISHDVRNNSAWTQRYFVINHT----TQFTPEVI 88 (235)
Q Consensus 21 ~~~~~~~~~~~~~-~~~~~--~~~y~~-~---~~~~~~Al~~~~~-aL~~~P~~~~a~~~~g~~l~~~----~~~~e~~~ 88 (235)
..++++++|-.+- ..+.. .-+++. + -|+.++|+..+.. ..+..+.+++.+-..|.++..+ +.-+.+..
T Consensus 163 Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~l 242 (374)
T PF13281_consen 163 LVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESL 242 (374)
T ss_pred HHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHH
Confidence 4566666654422 22322 334442 2 4789999999999 7777888999999999998754 22234568
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc-c---HHHHHHH----HHHHH----cCCCChHHHHHHHHHHHHhhH
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK-S---ERALALT----ADAIT----MNPANYTVWQYRREILKALNK 156 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~-~---~eAl~~~----~~al~----l~P~~~~aw~~r~~~l~~l~~ 156 (235)
++|+..|.+++.++|+.+..-| .+.++...|. . .+..+.. ..+.+ -.-.+++..-.+..+..-++
T Consensus 243 dkAi~~Y~kgFe~~~~~Y~GIN--~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~- 319 (374)
T PF13281_consen 243 DKAIEWYRKGFEIEPDYYSGIN--AATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAG- 319 (374)
T ss_pred HHHHHHHHHHHcCCccccchHH--HHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcC-
Confidence 8999999999999999999875 4456655553 2 2222211 11111 13455666666666666677
Q ss_pred hHHHHHHHHHHHHHhCCCChHHhHH
Q psy4772 157 DLHQELKYIGEKIKENSKNYQVWRH 181 (235)
Q Consensus 157 ~~eeal~~~~~al~~~P~n~~aw~~ 181 (235)
+++++...++++++..|. +|+.
T Consensus 320 d~~ka~~a~e~~~~l~~~---~W~l 341 (374)
T PF13281_consen 320 DYEKAIQAAEKAFKLKPP---AWEL 341 (374)
T ss_pred CHHHHHHHHHHHhhcCCc---chhH
Confidence 699999999999998654 6763
No 258
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.38 E-value=0.0064 Score=34.09 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=30.6
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n 209 (235)
.+++++|.++...|++++|+..+++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 378999999999999999999999999999974
No 259
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.35 E-value=0.026 Score=36.18 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=16.6
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~ 148 (235)
++..+.++|+|.+|+.+.+.+|+++|+|.+|..-+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 344444555555555555555555555555444333
No 260
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.31 E-value=0.038 Score=42.42 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=49.1
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
.++..+...|++++|+..+.+++.++|-+-.+|..+-.++...|+ ..+|+..|++..+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~-~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGR-RAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 456777889999999999999999999999999999999999995 8999998887643
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.30 E-value=0.034 Score=51.63 Aligned_cols=117 Identities=8% Similarity=-0.020 Sum_probs=90.4
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC---CchhhHHHHHHHhcccccH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN---ESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~---~~aw~~~~g~il~~~~~~~ 124 (235)
..+.|.+.+...++.-|+.+-..+..|.+....|+.+ +|++.+++++.....- .....+-+|+++..+.+++
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~-----~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLE-----EAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHH-----HHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 4578999999999999999999999999999999864 7999999888433222 2222346788888899999
Q ss_pred HHHHHHHHHHHcCCCChHHHHH-HHHHHHHhhHhH-------HHHHHHHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQY-RREILKALNKDL-------HQELKYIGEKIK 170 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~-r~~~l~~l~~~~-------eeal~~~~~al~ 170 (235)
+|..++.+.++.+.-+...+.+ .|-|+..+++ . ++|...+.++-.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~-~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR-EEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc-chhhhhhHHHHHHHHHHHHH
Confidence 9999999999988776655555 4667777774 5 666666666544
No 262
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.28 E-value=0.087 Score=37.58 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
+...++.+.-+|++..+.+.++..+..-|+ +++|++.+-.+++.+|..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~-~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGD-YEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccc
Confidence 344555555566666666666555555553 566666655555555543
No 263
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.28 E-value=0.43 Score=40.88 Aligned_cols=127 Identities=10% Similarity=0.103 Sum_probs=61.2
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC-chhhHHHHHHHhccc------
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE-SPWNYLRGAVVNAGE------ 121 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~-~aw~~~~g~il~~~~------ 121 (235)
...|+..|. ...+..++.+.+++|.++....- .+.+..+|...|.++....-... .+- +++|.++....
T Consensus 93 ~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~g-v~~d~~~A~~~~~~Aa~~g~~~a~~~~-~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 93 KTKAADWYR--CAAADGLAEALFNLGLMYANGRG-VPLDLVKALKYYEKAAKLGNVEAALAM-YRLGLAYLSGLQALAVA 168 (292)
T ss_pred HHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCC-cccCHHHHHHHHHHHHHcCChhHHHHH-HHHHHHHHcChhhhccc
Confidence 455555555 44445555555566655554211 11233455566665555533221 112 23444444321
Q ss_pred -ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh---hHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 122 -KSERALALTADAITMNPANYTVWQYRREILKAL---NKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 122 -~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l---~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
....|+..+.++.... +..+....|.+|..- .+++.+|..+|.++.+... ..+++..+
T Consensus 169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 1224555555555554 555555555555442 1235556666666555554 55555555
No 264
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.27 E-value=0.013 Score=31.38 Aligned_cols=30 Identities=20% Similarity=0.116 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
+|+.+|.++...+++++|..++++++.++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344444444444444444444444444444
No 265
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.22 E-value=0.019 Score=42.55 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=60.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchh---HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNS---AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~---a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
.|+.-+||+..+..+..++++.. .+...|.++..+..-.+ ||+--.. |.
T Consensus 9 rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~te----------------n~d~k~~--yL---------- 60 (111)
T PF04781_consen 9 RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTE----------------NPDVKFR--YL---------- 60 (111)
T ss_pred ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhcc----------------CchHHHH--HH----------
Confidence 37788999999999999998884 44556666655432110 1111111 11
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKE 171 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~ 171 (235)
.-+++++.++..+.|.++..++..|.=+.... .|++++.-++++|.+
T Consensus 61 -l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~-~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 -LGSVECFSRAVELSPDSAHSLFELASQLGSVK-YYKKAVKKAKRGLSV 107 (111)
T ss_pred -HHhHHHHHHHhccChhHHHHHHHHHHHhhhHH-HHHHHHHHHHHHhcc
Confidence 24667777777777777777777776665555 477777777776653
No 266
>KOG4507|consensus
Probab=96.18 E-value=0.048 Score=51.30 Aligned_cols=140 Identities=12% Similarity=-0.015 Sum_probs=106.7
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHh-cccccHHHHHHHHHHHHcCCCChH-HHHHHHHHH
Q psy4772 74 YFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVN-AGEKSERALALTADAITMNPANYT-VWQYRREIL 151 (235)
Q Consensus 74 g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~-~~~~~~eAl~~~~~al~l~P~~~~-aw~~r~~~l 151 (235)
-..+.+..++. .-++.+..+...+...|.-+.-...+.+.++. ..|..-.|++|...|+...|.... ...+++.++
T Consensus 575 k~~~~r~~~~~--i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~ 652 (886)
T KOG4507|consen 575 KILLSRINNYT--IPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLL 652 (886)
T ss_pred HHHHHHHhccc--CcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHH
Confidence 34444444442 11356666666666666555422122334444 468999999999999999997654 467889999
Q ss_pred HHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216 (235)
Q Consensus 152 ~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r 216 (235)
.+-+ ...+|-.++.+++.++..-+-..+..|..+..+.+.+.|++.++.|+.++|++..+-.-+
T Consensus 653 ~~~~-~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 653 IHYG-LHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHhh-hhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence 8888 589999999999999999999999999999999999999999999999999998876543
No 267
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.18 E-value=0.027 Score=40.22 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC--hHHhHHHHHHHhhcCCccc
Q psy4772 160 QELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN--YHAWQHRQWVINLLDDDDR 228 (235)
Q Consensus 160 eal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n--~~aw~~r~~~l~~l~~~~~ 228 (235)
..+..+++.++.+|++..+.+.++..+...|++++|++.+-.++..++.+ ..+---+--++..+|..+.
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 35778899999999999999999999999999999999999999998877 4444444455577777643
No 268
>KOG1941|consensus
Probab=95.99 E-value=0.11 Score=46.41 Aligned_cols=151 Identities=13% Similarity=0.066 Sum_probs=99.3
Q ss_pred cHHHHHHHHHhHHhcCCCch-----hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhh-----HHHHHHH
Q psy4772 48 LFSDELSYIEGLISHDVRNN-----SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWN-----YLRGAVV 117 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~-----~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~-----~~~g~il 117 (235)
+|.+++.+..-.+.+-.-.+ .++...|.+...++ .++++++.|++|++...++..+.. ..+|.++
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls-----~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf 172 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLS-----VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF 172 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHH-----HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH
Confidence 34455554444444322222 34444555555554 456899999999998777765430 2467777
Q ss_pred hcccccHHHHHHHHHHHHcCCCCh----------HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC------CChHHhHH
Q psy4772 118 NAGEKSERALALTADAITMNPANY----------TVWQYRREILKALNKDLHQELKYIGEKIKENS------KNYQVWRH 181 (235)
Q Consensus 118 ~~~~~~~eAl~~~~~al~l~P~~~----------~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P------~n~~aw~~ 181 (235)
..+.++++|+-+-.+|.++--... .+.++.+-.+..+|+ +.+|.++++++.++.- -..-...-
T Consensus 173 ~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~-LgdA~e~C~Ea~klal~~Gdra~~arc~~~ 251 (518)
T KOG1941|consen 173 AQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR-LGDAMECCEEAMKLALQHGDRALQARCLLC 251 (518)
T ss_pred HHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 788889999998888887643332 244556666666784 8999999999877532 22334555
Q ss_pred HHHHHHHcCCchHHHHHHHHHHH
Q psy4772 182 RQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
.+.++...|+.+.|..-|+.|..
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHHH
Confidence 77888889998888888887754
No 269
>KOG3364|consensus
Probab=95.97 E-value=0.066 Score=41.18 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=52.6
Q ss_pred hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH-hCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHH
Q psy4772 68 SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ-IAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQY 146 (235)
Q Consensus 68 ~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~-l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~ 146 (235)
+.-++.+|++....+. .++++.|..+..+++ -.|..-.-+.|.++.-+.++++|+.++.+.+..|+..|++.+|.--
T Consensus 33 ~s~f~lAwaLV~S~~~--~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDT--EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHcccch--HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3456666777665433 345667777777775 4444444333455556666677777777777777777777777666
Q ss_pred HHHHHHHhh
Q psy4772 147 RREILKALN 155 (235)
Q Consensus 147 r~~~l~~l~ 155 (235)
+..+..++.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 665555553
No 270
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.17 Score=47.53 Aligned_cols=133 Identities=14% Similarity=-0.037 Sum_probs=97.2
Q ss_pred HHHHHHhHHhcCCCchhHhhhH--HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHH
Q psy4772 52 ELSYIEGLISHDVRNNSAWTQR--YFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALAL 129 (235)
Q Consensus 52 Al~~~~~aL~~~P~~~~a~~~~--g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~ 129 (235)
++..+..-+..+|.+++.+... ...+...+... .+......++..||.+..+.+ ++|..+...|....++..
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~-~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADST-----LAFLAKRIPLSVNPENCPAVQ-NLAAALELDGLQFLALAD 123 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccch-----hHHHHHhhhHhcCcccchHHH-HHHHHHHHhhhHHHHHHH
Confidence 5555555566778888775444 55555565543 467778899999999999995 688887777765555555
Q ss_pred HH-HHHHcCCCChHHHHHH------HHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 130 TA-DAITMNPANYTVWQYR------REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 130 ~~-~al~l~P~~~~aw~~r------~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
+. .+....|++.....++ +..+..+++ .+++.....++..+.|++++..-+..+.....-+
T Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs 191 (620)
T COG3914 124 ISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR-TAEAELALERAVDLLPKYPRVLGALMTARQEQCS 191 (620)
T ss_pred HHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhcc
Confidence 44 5889999999999999 666666664 7888888999999999998777766666544443
No 271
>KOG3617|consensus
Probab=95.88 E-value=0.1 Score=51.06 Aligned_cols=161 Identities=14% Similarity=0.191 Sum_probs=93.2
Q ss_pred cCCCCCCCCCCchhHhhhhhhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCC
Q psy4772 25 LRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPK 104 (235)
Q Consensus 25 ~~~~~~~~~~~~~~~~~y~~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~ 104 (235)
|...+|++++....-...+..+|..++|+..|++.=+.+ .+-.++...|+. ++|++.-..-=++.=+
T Consensus 792 lR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w-----~eA~eiAE~~DRiHLr 858 (1416)
T KOG3617|consen 792 LRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMW-----SEAFEIAETKDRIHLR 858 (1416)
T ss_pred HHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccH-----HHHHHHHhhccceehh
Confidence 344455554333333345556788888888887764421 111223333332 2333322211111111
Q ss_pred CCchhhHHHHHHHhcccccHHHHHHHHHH----------HHcCC----------CChHHHHHHHHHHHHhhHhHHHHHHH
Q psy4772 105 NESPWNYLRGAVVNAGEKSERALALTADA----------ITMNP----------ANYTVWQYRREILKALNKDLHQELKY 164 (235)
Q Consensus 105 ~~~aw~~~~g~il~~~~~~~eAl~~~~~a----------l~l~P----------~~~~aw~~r~~~l~~l~~~~eeal~~ 164 (235)
+ .+ |+.+.-+...++.+.||+.|+|+ |.-+| ++...|..-|..++..|. .+.|+.+
T Consensus 859 ~--Ty-y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Ge-mdaAl~~ 934 (1416)
T KOG3617|consen 859 N--TY-YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGE-MDAALSF 934 (1416)
T ss_pred h--hH-HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccc-hHHHHHH
Confidence 1 11 33334444455566666666543 22233 344566677888888884 7888888
Q ss_pred HHHH---------------------HHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 165 IGEK---------------------IKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 165 ~~~a---------------------l~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
|..| |.....|-.|-||++.-|...|++.+|+.+|.+|
T Consensus 935 Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 935 YSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 7654 4456788889999999999999999999988876
No 272
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=1 Score=39.19 Aligned_cols=150 Identities=9% Similarity=0.060 Sum_probs=106.3
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHH-----HHHhccc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRG-----AVVNAGE 121 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g-----~il~~~~ 121 (235)
+++.+|...|..++...|++.++-..++.++...|+.+ -+..+|.-.|.....=. ..| .++....
T Consensus 148 e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e---------~A~~iL~~lP~~~~~~~-~~~l~a~i~ll~qaa 217 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVE---------AAQAILAALPLQAQDKA-AHGLQAQIELLEQAA 217 (304)
T ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChH---------HHHHHHHhCcccchhhH-HHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999864 24556666676665321 122 1122222
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
... ........+..||++..+-+..+..+...|+ .++|++.+=..+++|-..- -.++.+-+-.
T Consensus 218 ~~~-~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~-~e~Ale~Ll~~l~~d~~~~---------------d~~~Rk~lle 280 (304)
T COG3118 218 ATP-EIQDLQRRLAADPDDVEAALALADQLHLVGR-NEAALEHLLALLRRDRGFE---------------DGEARKTLLE 280 (304)
T ss_pred cCC-CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccccc---------------CcHHHHHHHH
Confidence 211 2345678888999999999999999999995 8999998888887764321 1233333333
Q ss_pred HH-HhCCCChHHhHHHHHHHhhc
Q psy4772 202 IL-AQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 202 ai-~ldp~n~~aw~~r~~~l~~l 223 (235)
.+ ..+|.|+-+-.+|+.+.++|
T Consensus 281 ~f~~~g~~Dp~~~~~RRkL~slL 303 (304)
T COG3118 281 LFEAFGPADPLVLAYRRKLYSLL 303 (304)
T ss_pred HHHhcCCCCHHHHHHHHHHHHhh
Confidence 33 36788888888888887654
No 273
>KOG2471|consensus
Probab=95.81 E-value=0.058 Score=49.75 Aligned_cols=118 Identities=12% Similarity=0.077 Sum_probs=84.2
Q ss_pred hCCCCCchhhHHHHHHHhcccccHHHHHHHHHH-HHcCCC--------ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-
Q psy4772 101 IAPKNESPWNYLRGAVVNAGEKSERALALTADA-ITMNPA--------NYTVWQYRREILKALNKDLHQELKYIGEKIK- 170 (235)
Q Consensus 101 l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~a-l~l~P~--------~~~aw~~r~~~l~~l~~~~eeal~~~~~al~- 170 (235)
...+.+.+. +.+......+|.+..|.+..... +...|. .-..|+++|-|+.+++. +.-+..+|.+|++
T Consensus 235 ~a~~s~~~l-~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~-y~~~~~~F~kAL~N 312 (696)
T KOG2471|consen 235 IAQDSSMAL-LLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGC-YQASSVLFLKALRN 312 (696)
T ss_pred hcCCCcHHH-HHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhh-HHHHHHHHHHHHHH
Confidence 334444444 45666666677777777655432 222333 22356777777777774 6666666666664
Q ss_pred -----------------hCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 171 -----------------ENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 171 -----------------~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
.-.+.....|+.|..+...|++-.|.+||.++...--+|+..|.-++-++
T Consensus 313 ~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 313 SCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred HHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 11367789999999999999999999999999999999999999998887
No 274
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.80 E-value=0.84 Score=37.36 Aligned_cols=159 Identities=12% Similarity=0.032 Sum_probs=100.2
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH-hCCCCCchhhHHHHHHHhcccccHHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ-IAPKNESPWNYLRGAVVNAGEKSERALA 128 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~-l~p~~~~aw~~~~g~il~~~~~~~eAl~ 128 (235)
+.++.-..+.+...|.. .-.+.+|..+..+|++. +|...|.+++. +-..++... ..++..+...++.-.|+.
T Consensus 73 ~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~-----EA~~hy~qalsG~fA~d~a~l-LglA~Aqfa~~~~A~a~~ 145 (251)
T COG4700 73 ERHLREATEELAIAPTV-QNRYRLANALAELGRYH-----EAVPHYQQALSGIFAHDAAML-LGLAQAQFAIQEFAAAQQ 145 (251)
T ss_pred hHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhh-----hhHHHHHHHhccccCCCHHHH-HHHHHHHHhhccHHHHHH
Confidence 33333334444444443 34567788888888875 57788887775 334444444 466677778888888888
Q ss_pred HHHHHHHcCCCChHH--HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHH----HHHHHH
Q psy4772 129 LTADAITMNPANYTV--WQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEEL----ALTAAI 202 (235)
Q Consensus 129 ~~~~al~l~P~~~~a--w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al----~~~~~a 202 (235)
..+++.+-+|..-+. ..-.+.++-.+|+ +++|-..++.++.-.|.- ++-...+-.+.++|+..++. +.++.+
T Consensus 146 tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~-~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 146 TLEDLMEYNPAFRSPDGHLLFARTLAAQGK-YADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHHHHhhcCCccCCCCchHHHHHHHHhcCC-chhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 888888888765443 3344667778885 788888888888888864 34444455566777665554 344444
Q ss_pred HHhCCCChHHhHHHHHH
Q psy4772 203 LAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 203 i~ldp~n~~aw~~r~~~ 219 (235)
....|-.- =.+|+|+
T Consensus 224 ~r~~~H~r--kh~reW~ 238 (251)
T COG4700 224 KRSRPHYR--KHHREWI 238 (251)
T ss_pred HhcchhHH--HHHHHHH
Confidence 44444332 2445554
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.79 E-value=0.019 Score=33.45 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 144 WQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
|.++|.++..+| ++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g-~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQG-DYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHH
Confidence 444455555555 25555555555
No 276
>KOG2471|consensus
Probab=95.79 E-value=0.06 Score=49.65 Aligned_cols=132 Identities=7% Similarity=-0.019 Sum_probs=101.3
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHH-HHHhC------CCCC--chhhHHHHHHHh
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRD-KIQIA------PKNE--SPWNYLRGAVVN 118 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~k-al~l~------p~~~--~aw~~~~g~il~ 118 (235)
...-+..-...+....-+.+.+...+....+..|.|. +|...+.. -+... |... -.|| ++|.|+.
T Consensus 221 ~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~-----kA~KlL~~sni~~~~g~~~T~q~~~cif~N-NlGcIh~ 294 (696)
T KOG2471|consen 221 NLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHP-----KAMKLLLVSNIHKEAGGTITPQLSSCIFNN-NLGCIHY 294 (696)
T ss_pred HHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchH-----HHHHHHHhcccccccCccccchhhhheeec-CcceEee
Confidence 3455555566677777888999999999999999875 55544332 12222 2222 2575 7999999
Q ss_pred cccccHHHHHHHHHHHH------------------cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhH
Q psy4772 119 AGEKSERALALTADAIT------------------MNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWR 180 (235)
Q Consensus 119 ~~~~~~eAl~~~~~al~------------------l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~ 180 (235)
.++.|+-+..+|.+||+ ...+.....++.|..+..+|+ --.|..|+.++.+.+-.|+-.|.
T Consensus 295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr-Pl~AfqCf~~av~vfh~nPrlWL 373 (696)
T KOG2471|consen 295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR-PLLAFQCFQKAVHVFHRNPRLWL 373 (696)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC-cHHHHHHHHHHHHHHhcCcHHHH
Confidence 99999999999999995 234567788999999999995 89999999999999999999999
Q ss_pred HHHHHH
Q psy4772 181 HRQIIV 186 (235)
Q Consensus 181 ~r~~~l 186 (235)
.++-+.
T Consensus 374 RlAEcC 379 (696)
T KOG2471|consen 374 RLAECC 379 (696)
T ss_pred HHHHHH
Confidence 887654
No 277
>KOG4507|consensus
Probab=95.72 E-value=0.13 Score=48.43 Aligned_cols=140 Identities=9% Similarity=0.067 Sum_probs=109.0
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc--hhhHHHHHHHhcccccHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES--PWNYLRGAVVNAGEKSERAL 127 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~--aw~~~~g~il~~~~~~~eAl 127 (235)
+.--.+.-.+++.+|.+.-.+..-+.--..+|+-. +|+.++..++-+.|.+.. +. ..+|.++.+.|++-+|-
T Consensus 196 ~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~-----~A~~Ca~~a~hf~~~h~kdi~l-LSlaTiL~RaG~sadA~ 269 (886)
T KOG4507|consen 196 DDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPY-----QAVECAMRALHFSSRHNKDIAL-LSLATVLHRAGFSADAA 269 (886)
T ss_pred HHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChh-----hhhHHHHHHhhhCCcccccchh-hhHHHHHHHcccccchh
Confidence 34445566778888887766665555555677644 688999999988888765 33 35788999999999988
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHH
Q psy4772 128 ALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEEL 196 (235)
Q Consensus 128 ~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al 196 (235)
-....|+.-.|-...-++..+.++-.++ .+...+-+|+.+.+..|..-++.-.+..++..+.+...++
T Consensus 270 iILhAA~~dA~~~t~n~y~l~~i~aml~-~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kl 337 (886)
T KOG4507|consen 270 VILHAALDDADFFTSNYYTLGNIYAMLG-EYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKL 337 (886)
T ss_pred heeehhccCCccccccceeHHHHHHHHh-hhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888999999998 4889999999999999988888888887777666655444
No 278
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.45 E-value=0.34 Score=48.64 Aligned_cols=134 Identities=7% Similarity=-0.006 Sum_probs=102.9
Q ss_pred hcHHHHHHHHHhHHhcCCCc---hhHhhhHHHHHhhcCC--CCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc
Q psy4772 47 NLFSDELSYIEGLISHDVRN---NSAWTQRYFVINHTTQ--FTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE 121 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~---~~a~~~~g~~l~~~~~--~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~ 121 (235)
..|+.|+..|+++-.-.|+. .+|.+..|+.+..+-. -++..+.+|+..|++.. -.|.-|--+ ..++.+++.+|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~ 566 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEY-LGKALVYQRLG 566 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHH-HhHHHHHHHhh
Confidence 56899999999999999886 5677888988775432 22346778888888754 355666666 57888999999
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH----hHHHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALNK----DLHQELKYIGEKIKENSKNYQVWRHR 182 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~----~~eeal~~~~~al~~~P~n~~aw~~r 182 (235)
.++|.++++..|++..|.++..-.-+-.+..+|-+ .-..++.+.--++..-|.....-..+
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (932)
T PRK13184 567 EYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEE 631 (932)
T ss_pred hHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHH
Confidence 99999999999999999999988888777777642 23567777777777788776554433
No 279
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.42 E-value=0.036 Score=48.38 Aligned_cols=85 Identities=8% Similarity=0.081 Sum_probs=55.4
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHH-HHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 130 TADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH-RQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 130 ~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~-r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
+.++....|.++..|..-.....+.+ .+.+--..|.++++.+|.|...|.. -..-+.-.++++.+...+.+++.++|+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k-~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKK-MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 34445556677777766555555555 4666666777777777777777766 444556666777777777777777777
Q ss_pred ChHHhHH
Q psy4772 209 NYHAWQH 215 (235)
Q Consensus 209 n~~aw~~ 215 (235)
++..|.-
T Consensus 175 ~p~iw~e 181 (435)
T COG5191 175 SPRIWIE 181 (435)
T ss_pred CchHHHH
Confidence 7777753
No 280
>KOG1550|consensus
Probab=95.40 E-value=0.99 Score=42.85 Aligned_cols=161 Identities=14% Similarity=0.069 Sum_probs=116.3
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH-------hCCCCCchhhHHHHHHHhccc
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ-------IAPKNESPWNYLRGAVVNAGE 121 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~-------l~p~~~~aw~~~~g~il~~~~ 121 (235)
-.+|..+++.+-. -.+..+-+.+|.++...+.=...+.++|+.++..+.. .. ++.+. +.+|.++....
T Consensus 228 ~~~a~~~~~~~a~--~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~-~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAK--LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQ-YGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHh--hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccc-cHHHHHHhcCC
Confidence 3567777776644 5688888999999887644344567789999988876 33 55566 57888888754
Q ss_pred -----ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh--HhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH-c---C
Q psy4772 122 -----KSERALALTADAITMNPANYTVWQYRREILKALN--KDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW-M---G 190 (235)
Q Consensus 122 -----~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~--~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~-l---~ 190 (235)
+++.|+..+.++-... ++.+.+..|.++..-. ++...|.++|..|.+. .+..|.+.++.++.. . .
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCC
Confidence 4677999999988875 4556677777777655 5578899999998764 566677777777744 2 2
Q ss_pred CchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 191 EPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 191 ~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+...|..++++|.+++ +++|-.-++.+.
T Consensus 379 ~~~~A~~~~k~aA~~g--~~~A~~~~~~~~ 406 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG--NPSAAYLLGAFY 406 (552)
T ss_pred CHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence 4789999999999998 666555555544
No 281
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.28 E-value=1.7 Score=37.23 Aligned_cols=164 Identities=11% Similarity=-0.015 Sum_probs=119.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc----cc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG----EK 122 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~----~~ 122 (235)
+.+..++..+..+-. -..+.+....+.++.... ..+....+|+..|. ...+..++.+- +.+|.++... .+
T Consensus 55 ~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~-gv~~~~~~A~~~~~--~~a~~g~~~a~-~~lg~~~~~G~gv~~d 128 (292)
T COG0790 55 PDYAKALKSYEKAAE--LGDAAALALLGQMYGAGK-GVSRDKTKAADWYR--CAAADGLAEAL-FNLGLMYANGRGVPLD 128 (292)
T ss_pred ccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhcc-CccccHHHHHHHHH--HHhhcccHHHH-HhHHHHHhcCCCcccC
Confidence 456788888777776 222366777777766543 33345678999888 44556677777 5788888873 37
Q ss_pred cHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHh----hH--hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH-cC---C
Q psy4772 123 SERALALTADAITMNPAN-YTVWQYRREILKAL----NK--DLHQELKYIGEKIKENSKNYQVWRHRQIIVEW-MG---E 191 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~-~~aw~~r~~~l~~l----~~--~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~-l~---~ 191 (235)
..+|+..|.++.+..-.. ..+....+.++..- +- ....|+..+.++.... +..+.+.+|.++.. .| +
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC
Confidence 899999999999985444 45577777777763 21 2347999999988877 77788889977744 34 6
Q ss_pred chHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 192 PDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 192 ~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+.+|+.+|++|.+... ..+++..+.+.
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~~~~ 233 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLGLMY 233 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHHHHH
Confidence 8999999999999988 77888887333
No 282
>KOG1550|consensus
Probab=95.00 E-value=1.7 Score=41.26 Aligned_cols=148 Identities=12% Similarity=0.090 Sum_probs=109.1
Q ss_pred cHHHHHHHHHhHHh-------cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc
Q psy4772 48 LFSDELSYIEGLIS-------HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG 120 (235)
Q Consensus 48 ~~~~Al~~~~~aL~-------~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~ 120 (235)
+.+.|+.++..+.. .. .+.+.+.+|.++....-...-..+.|+..+.++-.+...+.. +.+|.++...
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~---~~lg~~~~~g 338 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQ---YLLGVLYETG 338 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHH---HHHHHHHHcC
Confidence 67999999999987 33 677899999999886422211456899999999888755554 6788888776
Q ss_pred c---ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh---hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH-cCCch
Q psy4772 121 E---KSERALALTADAITMNPANYTVWQYRREILKAL---NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW-MGEPD 193 (235)
Q Consensus 121 ~---~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l---~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~-l~~~~ 193 (235)
. +...|.++|..|... .+..|..+.+.|+..- .++.+.|..++.++-+++ ++.|..-++..+.. .+++.
T Consensus 339 ~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~ 414 (552)
T KOG1550|consen 339 TKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYD 414 (552)
T ss_pred CccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcccccc
Confidence 5 468999999999875 5777888888887664 235799999999999998 77777777766633 37766
Q ss_pred HHHHHHHHHHH
Q psy4772 194 EELALTAAILA 204 (235)
Q Consensus 194 ~Al~~~~~ai~ 204 (235)
.++-.+....+
T Consensus 415 ~~~~~~~~~a~ 425 (552)
T KOG1550|consen 415 TALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHH
Confidence 66554444433
No 283
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.90 E-value=0.82 Score=39.91 Aligned_cols=117 Identities=16% Similarity=0.160 Sum_probs=87.7
Q ss_pred CCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCC----ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-hCCCC-
Q psy4772 102 APKNESPWNYLRGAVVNAGEKSERALALTADAITMNPA----NYTVWQYRREILKALNKDLHQELKYIGEKIK-ENSKN- 175 (235)
Q Consensus 102 ~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~----~~~aw~~r~~~l~~l~~~~eeal~~~~~al~-~~P~n- 175 (235)
.......| ...+.+..+.|.++-|...+.++...++. .+.+-...+.++-..|+ -.+|+..++..+. ...+.
T Consensus 142 ~~~~~~~~-l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~-~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 142 PEELAETW-LKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE-QEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hhHHHHHH-HHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhhcc
Confidence 44444566 35667777889999999999999987632 45666667777877784 6889998888887 11111
Q ss_pred --------------------------------hHHhHHHHHHHHHc------CCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 176 --------------------------------YQVWRHRQIIVEWM------GEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 176 --------------------------------~~aw~~r~~~l~~l------~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
..++..+|.....+ +..++++..|+.|+.++|....+|++.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 13555666666666 6778899999999999999999999999
Q ss_pred HHH
Q psy4772 218 WVI 220 (235)
Q Consensus 218 ~~l 220 (235)
...
T Consensus 300 ~~~ 302 (352)
T PF02259_consen 300 LFN 302 (352)
T ss_pred HHH
Confidence 888
No 284
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.82 E-value=0.17 Score=46.71 Aligned_cols=130 Identities=11% Similarity=0.069 Sum_probs=98.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
-|+...|-+-+..+|+..|..|..-..++.+...+|.|+ .+++...-+-..-..-..+... +-.-+..+|++.+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye-----~~~~~~s~~~~~~~s~~~~~~~-~~r~~~~l~r~~~ 375 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYE-----QAYQDISDVEKIIGTTDSTLRC-RLRSLHGLARWRE 375 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHH-----HHHHHhhchhhhhcCCchHHHH-HHHhhhchhhHHH
Confidence 478889999999999999999999999999999999885 3444444333333333333322 3356778899999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHR 182 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r 182 (235)
|+..-.-.|.-.-+.+.+..--+-.-..|+ .+++++..+++++.++|.--..|.+.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~-~~d~~~~~wk~~~~~~~~~~~g~v~~ 431 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQ-LFDKSYHYWKRVLLLNPETQSGWVNF 431 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHh-HHHHHHHHHHHHhccCChhcccceee
Confidence 999988888777777777666666667787 59999999999999999777666553
No 285
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.81 E-value=0.18 Score=38.10 Aligned_cols=87 Identities=9% Similarity=0.098 Sum_probs=45.1
Q ss_pred hcHHHHHHHHHhHHhcCCCc------------hhHhhhHHHHHhhcCCCCHH--HHHHHHHHHHHHHHhCCCCCchhh--
Q psy4772 47 NLFSDELSYIEGLISHDVRN------------NSAWTQRYFVINHTTQFTPE--VIQREIDYCRDKIQIAPKNESPWN-- 110 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~------------~~a~~~~g~~l~~~~~~~e~--~~~~Al~~~~kal~l~p~~~~aw~-- 110 (235)
+.|++|.+.+++|+.....- +-.+..++-++..+|+|++. ..++|+.+|++-=.++.+....|.
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 67899999999999874332 23344455678888988642 233445555544445544444441
Q ss_pred -HHHHHHHhcccccHHHHHHHHHH
Q psy4772 111 -YLRGAVVNAGEKSERALALTADA 133 (235)
Q Consensus 111 -~~~g~il~~~~~~~eAl~~~~~a 133 (235)
+.++..+...|+.++|+..|.++
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Confidence 12333334444444444444443
No 286
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.24 Score=42.44 Aligned_cols=74 Identities=14% Similarity=0.038 Sum_probs=63.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 147 RREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 147 r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
...++..-+ .++.|+.+.++.+.++|.++.-|.-||.++.++|.+.-|++.+...++.=|+++.+-.-+.-+..
T Consensus 187 lk~~~~~e~-~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~ 260 (269)
T COG2912 187 LKAALLREL-QWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE 260 (269)
T ss_pred HHHHHHHhh-chHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 344444445 48999999999999999999999999999999999999999999999999999988777666553
No 287
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.64 E-value=0.49 Score=35.75 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCc------------hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q psy4772 86 EVIQREIDYCRDKIQIAPKNES------------PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKA 153 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~------------aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~ 153 (235)
+.+++|.+.|.++....-.-|. ++ -.+...+..+|+|+++|..-+++|.. .+-||.+.+.
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~ch-A~Ls~A~~~Lgry~e~L~sA~~aL~Y-------FNRRGEL~qd 94 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCH-AGLSGALAGLGRYDECLQSADRALRY-------FNRRGELHQD 94 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHH-HHHHHHHHHTT-HHHHHHHHHHHHHH-------HHHH--TTST
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHHH-------Hhhccccccc
Confidence 4466788889998887655441 12 12345667788888888888887751 2333443333
Q ss_pred hhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 154 LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 154 l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
-|+.|=. +-++|+.++..+|+.++|+..|+.+.++
T Consensus 95 eGklWIa-----------------aVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 95 EGKLWIA-----------------AVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHH-----------------HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cchhHHH-----------------HHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3322211 3367888888899999999988888764
No 288
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.55 E-value=0.046 Score=47.77 Aligned_cols=82 Identities=16% Similarity=0.249 Sum_probs=43.8
Q ss_pred HHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHH-HHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 97 DKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQY-RREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 97 kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~-r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
++-..-|.++..|. .-..-..+.+.+.+--..|..+|.++|.+++.|.. -+.=+...+ +++.+...+.+.|+.+|.+
T Consensus 98 R~tnkff~D~k~w~-~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~a-ni~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 98 RSTNKFFNDPKIWS-QYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIA-NIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred hhhhcCCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhc-cHHHHHHHHHhhhccCCCC
Confidence 34445555666662 33222333455556666666666666666666655 233333334 3566666666666666666
Q ss_pred hHHhH
Q psy4772 176 YQVWR 180 (235)
Q Consensus 176 ~~aw~ 180 (235)
+..|.
T Consensus 176 p~iw~ 180 (435)
T COG5191 176 PRIWI 180 (435)
T ss_pred chHHH
Confidence 66664
No 289
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.31 E-value=0.22 Score=46.11 Aligned_cols=128 Identities=11% Similarity=0.057 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHH
Q psy4772 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYI 165 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~ 165 (235)
+++-.|-+-...+|...|..|..- ..++.|...+|.|+.++....-+-..-..-..+...|-.-+..|++ +.+|+..-
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i-~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r-~~~a~s~a 380 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLI-QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR-WREALSTA 380 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhh-HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh-HHHHHHHH
Confidence 344456667778899999999877 4678899999999999998877766666666777778888888995 99999998
Q ss_pred HHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 166 GEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 166 ~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
...+.-.-..+....--+-.-..+|-+++++...++++.++|.-.+.|.+
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 88887777777766655666677888999999999999999998888865
No 290
>KOG3364|consensus
Probab=93.89 E-value=0.54 Score=36.25 Aligned_cols=62 Identities=15% Similarity=0.270 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHH-cCCC-ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 123 SERALALTADAIT-MNPA-NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 123 ~~eAl~~~~~al~-l~P~-~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
.++-+.+++.+++ -.|. .-...++++.-+.++++ |+.++.+++..|+.+|+|.++-.-+..+
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlke-Y~~s~~yvd~ll~~e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKE-YSKSLRYVDALLETEPNNRQALELKETI 114 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhh-HHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4555555555554 2221 12344455555555553 5555555555555555555555444433
No 291
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.72 E-value=0.4 Score=39.82 Aligned_cols=69 Identities=10% Similarity=0.085 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHhhH------hHHHHHHHHHHHHHhCCC------ChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 141 YTVWQYRREILKALNK------DLHQELKYIGEKIKENSK------NYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 141 ~~aw~~r~~~l~~l~~------~~eeal~~~~~al~~~P~------n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
+..+...+|++..++. .+..|+..|.++++.... .....+..|-+..++|++++|+.+|.++|..--.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 3456667888877763 245566677777664432 2457788999999999999999999999985443
Q ss_pred C
Q psy4772 209 N 209 (235)
Q Consensus 209 n 209 (235)
+
T Consensus 198 s 198 (214)
T PF09986_consen 198 S 198 (214)
T ss_pred C
Confidence 3
No 292
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.71 E-value=1.4 Score=44.27 Aligned_cols=131 Identities=13% Similarity=0.124 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHhCCCC---CchhhHHHHHHHhcc----c---ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh
Q psy4772 86 EVIQREIDYCRDKIQIAPKN---ESPWNYLRGAVVNAG----E---KSERALALTADAITMNPANYTVWQYRREILKALN 155 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~---~~aw~~~~g~il~~~----~---~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~ 155 (235)
..++.|+..|.++-.--|.- ++|- ++.|..+... | .+.+||.-|++. .--|.-+-=+..++.+|++++
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 566 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQ-FRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLG 566 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHH-HHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhh
Confidence 46778999999988888654 4566 6778776542 2 367888877764 345777778889999999999
Q ss_pred HhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC-----chHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 156 KDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE-----PDEELALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 156 ~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~-----~~~Al~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
+++|+++++.-|+++.|.++..=.-+--+..++-. ...++.+.--++..-|.....=.-+..+
T Consensus 567 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (932)
T PRK13184 567 -EYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFL 634 (932)
T ss_pred -hHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 59999999999999999999765555544444332 2355566666666777766554444443
No 293
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=0.29 Score=41.96 Aligned_cols=71 Identities=17% Similarity=0.107 Sum_probs=60.7
Q ss_pred HHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 115 AVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 115 ~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.++...++++.|+.+.++.+.++|.++..+.-||.+|.++| -+.-|++.++..++.-|+.+.+-.-|..+.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~-c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLG-CYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcC-CchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 44555678899999999999999999999999999999999 589999999999999999888776665544
No 294
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.54 E-value=0.11 Score=43.72 Aligned_cols=56 Identities=5% Similarity=0.093 Sum_probs=30.6
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES 107 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~ 107 (235)
++.+.|.+.|++||.+.|+....|+..|..-...|+++ .|...|.+.|+++|.+..
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~d-----aAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFD-----AAAAAYEEVLELDPEDHG 64 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHH-----HHHHHHHHHHcCCccccc
Confidence 34455555555555555555555555555555555443 455555555555555543
No 295
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.48 E-value=0.18 Score=29.41 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
.+++++|.++...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35677777777777777777777777654
No 296
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.13 E-value=0.85 Score=37.88 Aligned_cols=91 Identities=5% Similarity=0.053 Sum_probs=57.6
Q ss_pred cHHHHHHHHHhHHhc------CC-CchhHhhhHHHHHhhcCCCCH--HHHHHHHHHHHHHHHhCCCCC-----chhhHHH
Q psy4772 48 LFSDELSYIEGLISH------DV-RNNSAWTQRYFVINHTTQFTP--EVIQREIDYCRDKIQIAPKNE-----SPWNYLR 113 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~------~P-~~~~a~~~~g~~l~~~~~~~e--~~~~~Al~~~~kal~l~p~~~-----~aw~~~~ 113 (235)
.+++|++.|.-||-. .| .-+..+...+|++..+|+-+. ..+++|++.|.++++....-. ....|.+
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 456777766665543 11 225677788888888776322 346778888888887664411 1222567
Q ss_pred HHHHhcccccHHHHHHHHHHHHcCC
Q psy4772 114 GAVVNAGEKSERALALTADAITMNP 138 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l~P 138 (235)
|.+..+.|++++|+..|.+++..--
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 7777777777777777777776543
No 297
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.11 E-value=0.25 Score=40.41 Aligned_cols=63 Identities=16% Similarity=0.063 Sum_probs=30.2
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
.|++.++...|.+++|+...+..-.-.-. +..-.-||.++...|+ -.+|+..|+++++.++.+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg~-k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKGD-KQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcCc-hHHHHHHHHHHHHccCCh
Confidence 34555555555555555544433221100 1113345566666553 455666666666555443
No 298
>KOG2422|consensus
Probab=93.02 E-value=8.4 Score=36.60 Aligned_cols=159 Identities=9% Similarity=-0.007 Sum_probs=95.5
Q ss_pred cHHHHHHHHHhHHhc------------CCCchhHhhhHHHHHhhcCCCCH--HHHHHHHHHHHHHHHhCCCCCc-hhh--
Q psy4772 48 LFSDELSYIEGLISH------------DVRNNSAWTQRYFVINHTTQFTP--EVIQREIDYCRDKIQIAPKNES-PWN-- 110 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~------------~P~~~~a~~~~g~~l~~~~~~~e--~~~~~Al~~~~kal~l~p~~~~-aw~-- 110 (235)
-|++|...|..|... .|...+.+...+.+...+|+.+. .-+++++=.++.++. |.+.- .|+
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~h--p~F~~~sg~cR 330 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALH--PNFIPFSGNCR 330 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhc--ccccccccccc
Confidence 357777777777655 67778888999999999998754 357788888888774 22211 111
Q ss_pred ---------------HHHHHHHhcccccHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHhhHhHHHHHHHHHHH-----H
Q psy4772 111 ---------------YLRGAVVNAGEKSERALALTADAITMNPA-NYTVWQYRREILKALNKDLHQELKYIGEK-----I 169 (235)
Q Consensus 111 ---------------~~~g~il~~~~~~~eAl~~~~~al~l~P~-~~~aw~~r~~~l~~l~~~~eeal~~~~~a-----l 169 (235)
++.-.-+..+|=+..|++.++-++.++|. ++.+-...-.+|-=..+.|.==+.+++.. +
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 11112344567799999999999999999 77766554444322222222222222222 2
Q ss_pred HhCCCChHHhHHHHHHHHHcCC---chHHHHHHHHHHHhCCCC
Q psy4772 170 KENSKNYQVWRHRQIIVEWMGE---PDEELALTAAILAQDAKN 209 (235)
Q Consensus 170 ~~~P~n~~aw~~r~~~l~~l~~---~~~Al~~~~~ai~ldp~n 209 (235)
..-|+-.-.. -++..+..... -+.|+..+.+|+...|.-
T Consensus 411 ~~~PN~~yS~-AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~v 452 (665)
T KOG2422|consen 411 SQLPNFGYSL-ALARFFLRKNEEDDRQSALNALLQALKHHPLV 452 (665)
T ss_pred hhcCCchHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHhCcHH
Confidence 2233322111 12222322222 568889999999999943
No 299
>KOG1585|consensus
Probab=92.91 E-value=2.1 Score=36.48 Aligned_cols=155 Identities=9% Similarity=0.068 Sum_probs=72.0
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC--HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHh------c
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT--PEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVN------A 119 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~--e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~------~ 119 (235)
.|++|--++.+|+.....|...|+ -+..+...+-+. -..+.++..+++|+..+--++.++=. -+..+. +
T Consensus 46 ~feKakdcLlkA~~~yEnnrslfh-AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt--AAmaleKAak~le 122 (308)
T KOG1585|consen 46 KFEKAKDCLLKASKGYENNRSLFH-AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT--AAMALEKAAKALE 122 (308)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch--HHHHHHHHHHHhh
Confidence 556666666666665555554332 222221111000 01234566666666665544443321 112222 2
Q ss_pred ccccHHHHHHHHHHHHcC---CCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC------CCChHHhHHHHHHHH
Q psy4772 120 GEKSERALALTADAITMN---PAN---YTVWQYRREILKALNKDLHQELKYIGEKIKEN------SKNYQVWRHRQIIVE 187 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~---P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~------P~n~~aw~~r~~~l~ 187 (235)
.-..++||.+|++++.+- ... +..+...+.+|.++.+ |++|-..+.+-.... |....+......++.
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k-f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK-FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH-hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 234566666666665432 111 1222334555555553 666666666655532 222223333333444
Q ss_pred HcCCchHHHHHHHHHHHhC
Q psy4772 188 WMGEPDEELALTAAILAQD 206 (235)
Q Consensus 188 ~l~~~~~Al~~~~~ai~ld 206 (235)
...+|..|-.+++.-..+.
T Consensus 202 ~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred hHHHHHHHHHHhcchhcCc
Confidence 4446666666666555443
No 300
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.88 E-value=0.25 Score=41.48 Aligned_cols=52 Identities=13% Similarity=0.351 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH
Q psy4772 90 REIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYT 142 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~ 142 (235)
.|.+.|++++.+-|+....| ++.|....+.|+.+.|.+.+++.|+++|.+..
T Consensus 13 aaaely~qal~lap~w~~gw-fR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 13 AAAELYNQALELAPEWAAGW-FRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred HHHHHHHHHhhcCchhhhhh-hhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 45555666666666666666 45555555556666666666666666655543
No 301
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.54 E-value=0.41 Score=28.03 Aligned_cols=33 Identities=21% Similarity=0.077 Sum_probs=22.7
Q ss_pred HHhHHHHHHHHHcCCchHHHHH--HHHHHHhCCCC
Q psy4772 177 QVWRHRQIIVEWMGEPDEELAL--TAAILAQDAKN 209 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~--~~~ai~ldp~n 209 (235)
..|+..|..+...|++++|++. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3567777777888888888888 44777777764
No 302
>KOG4814|consensus
Probab=92.51 E-value=1.7 Score=41.64 Aligned_cols=92 Identities=9% Similarity=-0.049 Sum_probs=77.0
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCCh------HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANY------TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~------~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.+.-+.+..+|..+++.|...++.-|.+. .......-||.+|.+ ++.|++.+++|=+.+|.++-.-.....+.
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q-LD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ-LDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 45667778999999999999998777654 355567788888885 99999999999999999998888888888
Q ss_pred HHcCCchHHHHHHHHHHHh
Q psy4772 187 EWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 187 ~~l~~~~~Al~~~~~ai~l 205 (235)
..-+.-++|+.+.......
T Consensus 439 ~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHhcchHHHHHHHHHHHhh
Confidence 8888999999988776553
No 303
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.41 E-value=0.52 Score=39.89 Aligned_cols=62 Identities=13% Similarity=-0.002 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW 188 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~ 188 (235)
|..+|.+|+.+.|++-..|+++|.+...-+. .-+|+-+|-|++-..--.+.|..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~-~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGD-DLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT--HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccc-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5667777777777777777777777777663 5666666666665443446677777666655
No 304
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.03 E-value=1.2 Score=36.54 Aligned_cols=95 Identities=16% Similarity=0.071 Sum_probs=70.7
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCC-CChHH--HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHH--hHHHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNP-ANYTV--WQYRREILKALNKDLHQELKYIGEKIKENSKNYQV--WRHRQIIVE 187 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P-~~~~a--w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~a--w~~r~~~l~ 187 (235)
++......+++++|+...+.++..-- ++..+ =..++.++..+++ +++|+..++..-. .++.+ ---||.++.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k-~D~AL~~L~t~~~---~~w~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKK-ADAALKTLDTIKE---ESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhh-HHHHHHHHhcccc---ccHHHHHHHHhhhHHH
Confidence 56677788999999999988885322 22222 2345788888885 8999998876432 33333 567999999
Q ss_pred HcCCchHHHHHHHHHHHhCCCChH
Q psy4772 188 WMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 188 ~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
..|+-.+|+..|++|++.++....
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HcCchHHHHHHHHHHHHccCChHH
Confidence 999999999999999999865544
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.77 E-value=3 Score=33.01 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=77.8
Q ss_pred hcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHH
Q psy4772 118 NAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELA 197 (235)
Q Consensus 118 ~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~ 197 (235)
...+..+++...+..+--+.|+.+..-..-|+++...| +|.+|+..++.+....|..+-+=-.+++++..+++.+== .
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~-~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr-~ 98 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRG-DWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR-R 98 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC-CHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH-H
Confidence 34678899999999999999999999999999999999 599999999999999999998888889999999985411 1
Q ss_pred HHHHHHHhCCCChHHhHHHHHHH
Q psy4772 198 LTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 198 ~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+.+.+++..+ ++.+-.-.+.++
T Consensus 99 ~A~evle~~~-d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 99 YADEVLESGA-DPDARALVRALL 120 (160)
T ss_pred HHHHHHhcCC-ChHHHHHHHHHH
Confidence 2344555554 455444444333
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.70 E-value=2.8 Score=33.23 Aligned_cols=82 Identities=12% Similarity=-0.064 Sum_probs=67.2
Q ss_pred hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHH
Q psy4772 68 SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYR 147 (235)
Q Consensus 68 ~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r 147 (235)
.++.....+-...+.. .++...+..+--+.|+.+..- ..-|+++...|++.+|+..++.+.+..|..+.+=--.
T Consensus 11 ~gLie~~~~al~~~~~-----~D~e~lL~ALrvLRP~~~e~~-~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDP-----DDAEALLDALRVLRPEFPELD-LFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHccCCh-----HHHHHHHHHHHHhCCCchHHH-HHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 4455555555566644 357778888888999999988 4689999999999999999999999999999888888
Q ss_pred HHHHHHhh
Q psy4772 148 REILKALN 155 (235)
Q Consensus 148 ~~~l~~l~ 155 (235)
+.|+..++
T Consensus 85 A~CL~~~~ 92 (160)
T PF09613_consen 85 ALCLYALG 92 (160)
T ss_pred HHHHHHcC
Confidence 89998887
No 307
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.54 E-value=0.69 Score=39.13 Aligned_cols=60 Identities=13% Similarity=0.240 Sum_probs=24.6
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q psy4772 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKA 153 (235)
Q Consensus 93 ~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~ 153 (235)
.+|.+|+.+.|.+..+|| .+|.+....|+.=+|+-.|-+++.-.-.++.|..++..++.+
T Consensus 3 ~~Y~~A~~l~P~~G~p~n-QLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 3 RYYRKAIRLLPSNGNPYN-QLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHH-TTBSHHHH-HHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCccc-chhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 344444444444444442 344444444444444444444444333334444444444443
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.17 E-value=0.55 Score=27.25 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKE 171 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~ 171 (235)
.+++++|.++...|+ +++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGR-YEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh-cchhhHHHHHHHHH
Confidence 356677777777773 77777777776653
No 309
>KOG3617|consensus
Probab=91.09 E-value=4.3 Score=40.28 Aligned_cols=165 Identities=10% Similarity=0.086 Sum_probs=106.1
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC----------HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT----------PEVIQREIDYCRDKIQIAPKNESPWNYLRGAV 116 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~----------e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~i 116 (235)
|+.+.|.....-+ +.-.+|.|++..-....+.+ .++-- ....++.+ +|+..++ ..+.+
T Consensus 742 G~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga---RAlR~a~q-~~~e~ea---kvAvL 809 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA---RALRRAQQ-NGEEDEA---KVAVL 809 (1416)
T ss_pred ccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH---HHHHHHHh-CCcchhh---HHHHH
Confidence 6667776554332 34678988887766555543 22211 22333433 4444443 34566
Q ss_pred HhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHH
Q psy4772 117 VNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEEL 196 (235)
Q Consensus 117 l~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al 196 (235)
-.++|..++|+..|.+.-+.+ -+-..|+..| .|.+|++.-+.-=+++-+| .+++.+.-+...++.+.|+
T Consensus 810 AieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g-~w~eA~eiAE~~DRiHLr~--Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYD--------LLNKLYQSQG-MWSEAFEIAETKDRIHLRN--TYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcc-cHHHHHHHHhhccceehhh--hHHHHHHHHHhhccHHHHH
Confidence 677899999999999877643 1223456666 4788777655543344343 7888888888889999999
Q ss_pred HHHHHH----------HHhCC----------CChHHhHHHHHHHhhcCCccccccccc
Q psy4772 197 ALTAAI----------LAQDA----------KNYHAWQHRQWVINLLDDDDRGVLEYE 234 (235)
Q Consensus 197 ~~~~~a----------i~ldp----------~n~~aw~~r~~~l~~l~~~~~~~~~~~ 234 (235)
++|+++ +.-+| ++.+.|..-|.-+...|.++.|...|.
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 988875 33344 456677777777888888888877664
No 310
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.43 E-value=0.38 Score=28.14 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=17.4
Q ss_pred HHHHHHHhcccccHHHHHH--HHHHHHcCCC
Q psy4772 111 YLRGAVVNAGEKSERALAL--TADAITMNPA 139 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~--~~~al~l~P~ 139 (235)
+..|..+...|++++|++. |.-+..++|.
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4566666666677777776 3366666654
No 311
>KOG1585|consensus
Probab=90.28 E-value=3.8 Score=34.99 Aligned_cols=149 Identities=8% Similarity=0.037 Sum_probs=87.4
Q ss_pred HHHHHHHHhHHhc-CCC---chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHH------HHHHHhc
Q psy4772 50 SDELSYIEGLISH-DVR---NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYL------RGAVVNA 119 (235)
Q Consensus 50 ~~Al~~~~~aL~~-~P~---~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~------~g~il~~ 119 (235)
.++.+..-..+.. .|+ -++.+..-+.++...++|+ +|-.++.+++.-..++-..| +. .|.++.+
T Consensus 10 ~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~fe-----KakdcLlkA~~~yEnnrslf-hAAKayEqaamLake 83 (308)
T KOG1585|consen 10 SEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFE-----KAKDCLLKASKGYENNRSLF-HAAKAYEQAAMLAKE 83 (308)
T ss_pred HHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHH-----HHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHH
Confidence 4445444444442 222 1344555566666777664 67777888886666666555 22 3445566
Q ss_pred ccccHHHHHHHHHHHHcCCCC-----hH-HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh------HHhHHHHHHHH
Q psy4772 120 GEKSERALALTADAITMNPAN-----YT-VWQYRREILKALNKDLHQELKYIGEKIKENSKNY------QVWRHRQIIVE 187 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~-----~~-aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~------~aw~~r~~~l~ 187 (235)
+..+.|+..+++++..+.-.+ .. ++-.-+.++++.. -++|+.+|++++.+--..- ..+-..+.++.
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~--Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVK--PDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 677888888888888764222 11 2222344444443 5778888888877765443 23444556666
Q ss_pred HcCCchHHHHHHHHHHHhC
Q psy4772 188 WMGEPDEELALTAAILAQD 206 (235)
Q Consensus 188 ~l~~~~~Al~~~~~ai~ld 206 (235)
++.++.+|-..+.+-....
T Consensus 162 rl~kf~Eaa~a~lKe~~~~ 180 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAA 180 (308)
T ss_pred hhHHhhHHHHHHHHhhhHH
Confidence 6777777777766665554
No 312
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.73 E-value=1.6 Score=39.11 Aligned_cols=110 Identities=11% Similarity=-0.039 Sum_probs=74.1
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHc--------------------------CCCChHHH---
Q psy4772 94 YCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITM--------------------------NPANYTVW--- 144 (235)
Q Consensus 94 ~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l--------------------------~P~~~~aw--- 144 (235)
.....|+.+|-|..+. ...+.++...|+.+.|-++.++||-. .|.|-.-|
T Consensus 28 ~l~~ll~~~PyHidtL-lqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 28 ALINLLQKNPYHIDTL-LQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL 106 (360)
T ss_pred HHHHHHHHCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH
Confidence 3456789999999999 68999999999988888877777631 11222222
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHhCCC-ChHHhHHHHHHH-HHcCCchHHHHHHHHHHHh
Q psy4772 145 QYRREILKALNKDLHQELKYIGEKIKENSK-NYQVWRHRQIIV-EWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 145 ~~r~~~l~~l~~~~eeal~~~~~al~~~P~-n~~aw~~r~~~l-~~l~~~~~Al~~~~~ai~l 205 (235)
+.....+.+-| -+..|+++++-++.+||. ++.+-......+ .+.+.++--+++++.....
T Consensus 107 ~r~i~~L~~RG-~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 107 FRYIQSLGRRG-CWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred HHHHHHHHhcC-cHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Confidence 22222233334 378888888888888888 666555444444 6677777777777766665
No 313
>KOG1586|consensus
Probab=89.40 E-value=12 Score=31.72 Aligned_cols=127 Identities=7% Similarity=-0.000 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCchh---h--HHHHHHHhc-ccccHHHHHHHHHHHHcCCC-ChHHHHHH-----HHHHHHh
Q psy4772 87 VIQREIDYCRDKIQIAPKNESPW---N--YLRGAVVNA-GEKSERALALTADAITMNPA-NYTVWQYR-----REILKAL 154 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~~~~aw---~--~~~g~il~~-~~~~~eAl~~~~~al~l~P~-~~~aw~~r-----~~~l~~l 154 (235)
..++|++++.+++.+-.+-...- + .-+|.++.. +.+++.|+.+|+.+-+.... ...+--++ +..--.+
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 34678888888888765544311 0 124555544 46788999999988875432 22222232 2223335
Q ss_pred hHhHHHHHHHHHHHHHhCCCChH-HhHHHHHH------HHHcCCchHHHHHHHHHHHhCCCChHHhH
Q psy4772 155 NKDLHQELKYIGEKIKENSKNYQ-VWRHRQII------VEWMGEPDEELALTAAILAQDAKNYHAWQ 214 (235)
Q Consensus 155 ~~~~eeal~~~~~al~~~P~n~~-aw~~r~~~------l~~l~~~~~Al~~~~~ai~ldp~n~~aw~ 214 (235)
+ .+.+|+..|+++.+-.-+|.- -|.-++.+ ...-.+.-.+-..+++-.+++|.+...-.
T Consensus 168 e-qY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 168 E-QYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred H-HHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence 6 489999999998886665553 33333333 33335666777788888889999887643
No 314
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=89.29 E-value=16 Score=32.71 Aligned_cols=163 Identities=11% Similarity=0.032 Sum_probs=118.0
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC---------------------HHHHHHHHHHHHHHHHhCCCCCc
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT---------------------PEVIQREIDYCRDKIQIAPKNES 107 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~---------------------e~~~~~Al~~~~kal~l~p~~~~ 107 (235)
-.+|+..-+-.+.+-|..++++-..+.++..-.+.. -.-+.+++...++++...- +.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~--pG 289 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRR--PG 289 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCC--CC
Confidence 389999999999999999999999998887655421 1357788888888887665 55
Q ss_pred hhhHHHHHHHh---c-----ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh--CCCChH
Q psy4772 108 PWNYLRGAVVN---A-----GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKE--NSKNYQ 177 (235)
Q Consensus 108 aw~~~~g~il~---~-----~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~--~P~n~~ 177 (235)
.+. ..+.|.. . .-++..-..+|+....+.|+-.-. .||+-++-.-.- -+.++..++.+... =.....
T Consensus 290 PYq-lqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~-LNRAVAla~~~G-p~agLa~ve~L~~~~~L~gy~~ 366 (415)
T COG4941 290 PYQ-LQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVT-LNRAVALAMREG-PAAGLAMVEALLARPRLDGYHL 366 (415)
T ss_pred hHH-HHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEe-ehHHHHHHHhhh-HHhHHHHHHHhhcccccccccc
Confidence 552 2333321 1 123566667777777777776555 455555544331 57788888877765 445667
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r 216 (235)
.|.-|+-++.++|+.++|...|++||.+-++-...-+-+
T Consensus 367 ~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 367 YHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred cHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 888899999999999999999999999999887654433
No 315
>KOG0546|consensus
Probab=88.54 E-value=1.7 Score=38.69 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=50.7
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.+.+-.+.+.+..|+..+..+++.+++...+++-|+..+..+. .+++|+..+..+....|.+...-.-...+-
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~-~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLK-NYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred hHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhh-chhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 4455566667777777777777777777777777777777777 477777777777777777765544443333
No 316
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.31 E-value=3 Score=36.08 Aligned_cols=54 Identities=7% Similarity=-0.018 Sum_probs=46.3
Q ss_pred HHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 150 ILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 150 ~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
.+...+ .++...+.+++++..+|.+-.+|..+.-++...|+...|+..|++.-.
T Consensus 162 ~~~~~~-~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 162 ALIACG-RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHhcc-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 333444 478889999999999999999999999999999999999998887744
No 317
>KOG1258|consensus
Probab=88.23 E-value=24 Score=33.58 Aligned_cols=190 Identities=9% Similarity=-0.013 Sum_probs=125.0
Q ss_pred cCCCCCCCCCCchhHhhhhhhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhC-C
Q psy4772 25 LRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIA-P 103 (235)
Q Consensus 25 ~~~~~~~~~~~~~~~~~y~~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~-p 103 (235)
|.|+.++.-.+......|....|+++...-.|++++--..-..+.|..-..-+...|..+- |-.....+.++. |
T Consensus 289 vkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~-----~~~~~~~~~~i~~k 363 (577)
T KOG1258|consen 289 VKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSL-----ANNVLARACKIHVK 363 (577)
T ss_pred cCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhH-----HHHHHHhhhhhcCC
Confidence 4444444433333344555667899999999999999999999999999988888876532 222334444443 3
Q ss_pred CCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHH--HHHHHHhCCCChH----
Q psy4772 104 KNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKY--IGEKIKENSKNYQ---- 177 (235)
Q Consensus 104 ~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~--~~~al~~~P~n~~---- 177 (235)
+.+... ..-+.+-...|.+..|...++++..--|+...+-..+.....+.|. .+.+-.. +-..+...-.|..
T Consensus 364 ~~~~i~-L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~-~~~~~~~~~l~s~~~~~~~~~~i~~~ 441 (577)
T KOG1258|consen 364 KTPIIH-LLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGN-LEDANYKNELYSSIYEGKENNGILEK 441 (577)
T ss_pred CCcHHH-HHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcc-hhhhhHHHHHHHHhcccccCcchhHH
Confidence 333333 2233344457899999999999998889999998888888888884 5665531 1112222222222
Q ss_pred HhHHHHHHH-HHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 178 VWRHRQIIV-EWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 178 aw~~r~~~l-~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
.....++.. .-.++.+.|...+..++..+|.+-..|.-...+..
T Consensus 442 l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 442 LYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFEL 486 (577)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHH
Confidence 223333333 33556788899999999999999888776655543
No 318
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=87.87 E-value=20 Score=32.10 Aligned_cols=130 Identities=12% Similarity=0.072 Sum_probs=93.7
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHH---HhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFV---INHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~---l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..++++..+++|+...- +..|...+-+ ......-+.-+|..=...|+....+.|+=....| ++.++....-.+
T Consensus 271 lI~eg~all~rA~~~~~--pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LN--RAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASRR--PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLN--RAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcCC--CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeeh--HHHHHHHhhhHH
Confidence 45888889999887654 3333333322 2222222222455556788999999998888774 678888777778
Q ss_pred HHHHHHHHHHHc--CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 125 RALALTADAITM--NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHR 182 (235)
Q Consensus 125 eAl~~~~~al~l--~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r 182 (235)
-+|...+.+... =..+...|.-|+.++.+||+ .++|...|+++|.+-++-...-+-+
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr-~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGR-VEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCC-hHHHHHHHHHHHHhcCChHHHHHHH
Confidence 888888887776 45677788899999999995 8999999999999998886654433
No 319
>KOG3807|consensus
Probab=87.63 E-value=20 Score=32.06 Aligned_cols=174 Identities=9% Similarity=0.054 Sum_probs=98.9
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCC---------------------CCch
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPK---------------------NESP 108 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~---------------------~~~a 108 (235)
.+-++.-..||.+||+.+.++..++---. .-+-+|...++++|+.-.. +...
T Consensus 201 ~~RI~~A~~ALeIN~eCA~AyvLLAEEEa-------~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnv 273 (556)
T KOG3807|consen 201 PARIKAAYQALEINNECATAYVLLAEEEA-------TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNV 273 (556)
T ss_pred HHHHHHHHHHHhcCchhhhHHHhhhhhhh-------hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccch
Confidence 45567777899999999999876652111 1122344444444432111 1111
Q ss_pred hh---HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-----CCCChHHhH
Q psy4772 109 WN---YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKE-----NSKNYQVWR 180 (235)
Q Consensus 109 w~---~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~-----~P~n~~aw~ 180 (235)
.. .+++.|-.++|+..||++.+....+-.| -...++--..+++.+-+ -.|...++.++.+ -|++...-+
T Consensus 274 l~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p-l~t~lniheNLiEalLE--~QAYADvqavLakYDdislPkSA~icY 350 (556)
T KOG3807|consen 274 LVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP-LLTMLNIHENLLEALLE--LQAYADVQAVLAKYDDISLPKSAAICY 350 (556)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhccccCcchHHHHH
Confidence 11 1346677789999999999998888777 44444444444444431 3455556665553 356554443
Q ss_pred HHHHHHHH-------------cCC---chHHHHHHHHHHHhCCCChHHhHHHHHHH----hhcCCcccccccc
Q psy4772 181 HRQIIVEW-------------MGE---PDEELALTAAILAQDAKNYHAWQHRQWVI----NLLDDDDRGVLEY 233 (235)
Q Consensus 181 ~r~~~l~~-------------l~~---~~~Al~~~~~ai~ldp~n~~aw~~r~~~l----~~l~~~~~~~~~~ 233 (235)
--+.+-.+ .|- -..|++.+.+|.+-+|.-+....-...+. -+|++-+++-+-|
T Consensus 351 TaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~kslIlPPEHiLKRGDSEAlAY 423 (556)
T KOG3807|consen 351 TAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAY 423 (556)
T ss_pred HHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHHhccCCHHHHhhcccHHHHHH
Confidence 33222111 111 13688899999999999887665544443 2555555444433
No 320
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=87.57 E-value=18 Score=31.33 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCc
Q psy4772 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEP 192 (235)
Q Consensus 158 ~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~ 192 (235)
.+.|...+.+|+.++|+...+...+..+-..+|.+
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 57788888888888888888888888777777764
No 321
>KOG1586|consensus
Probab=87.50 E-value=17 Score=30.95 Aligned_cols=106 Identities=8% Similarity=0.056 Sum_probs=64.3
Q ss_pred HHHHhcccccHHHHHHHHHHHHcCCCC---hHH---HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh------HHhHH
Q psy4772 114 GAVVNAGEKSERALALTADAITMNPAN---YTV---WQYRREILKALNKDLHQELKYIGEKIKENSKNY------QVWRH 181 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l~P~~---~~a---w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~------~aw~~ 181 (235)
+.++. .++.++|+.+.++++++.-+- ..+ ....+.+|+.--.+++.|+.+|+.+-+-....- .....
T Consensus 81 ~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lK 159 (288)
T KOG1586|consen 81 ANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLK 159 (288)
T ss_pred HHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence 33444 458999999999999864221 111 112344554421257888888888876443221 23344
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCChH-HhHHHHHHH
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQDAKNYH-AWQHRQWVI 220 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~-aw~~r~~~l 220 (235)
.+..-..++.|.+|++.|+.+..---+|.. =|.-+++++
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyfl 199 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFL 199 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHH
Confidence 444556688899999999998875555443 344455554
No 322
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=87.12 E-value=3.7 Score=28.23 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALNK 156 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~ 156 (235)
.|++|++.+.+++...|+++..-.+|..+...+.+
T Consensus 28 ~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R 62 (75)
T cd02682 28 NYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR 62 (75)
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 34556666666677888888888888887776653
No 323
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.00 E-value=24 Score=32.26 Aligned_cols=118 Identities=13% Similarity=-0.017 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH-HHHHHHH-----HhhHhHHHHH
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ-YRREILK-----ALNKDLHQEL 162 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~-~r~~~l~-----~l~~~~eeal 162 (235)
+-|..+-..+-.+-|.-+.+|. ..-......|+++.||++.+......--....-. .|+-++. .+.-+-..|.
T Consensus 171 eaAr~yAe~Aa~~Ap~l~WA~~-AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKAPQLPWAAR-ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhccCCchHHH-HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 3455566666666666666663 2223444556666666655544332111111111 1111111 1111234455
Q ss_pred HHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 163 KYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 163 ~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
.+-..+.++.|+-..+-.--+.++.+.|+.-++-..++.+.+.+|
T Consensus 250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 555556666666666555555566666655555555555555444
No 324
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.37 E-value=8.8 Score=26.70 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=32.4
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHH---HHHhhHhHHHHHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREI---LKALNKDLHQELKYIGE 167 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~---l~~l~~~~eeal~~~~~ 167 (235)
+|.-+......++||....++|+..++....|.-+|.+ +...|+ +.+.+.+--+
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk-yr~~L~fA~~ 68 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK-YREMLAFALQ 68 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 44455566667777777777777776666655554443 444453 6666665433
No 325
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=84.69 E-value=3.9 Score=35.38 Aligned_cols=34 Identities=9% Similarity=-0.011 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 192 PDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 192 ~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
.+.|...+.+|++++|+-..+...+..+-..+|.
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 3788899999999999999999988877666654
No 326
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.32 E-value=2.4 Score=22.82 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=15.3
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHH
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRY 74 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g 74 (235)
++.+...|++++...|.++..|....
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 45556666666666666666665443
No 327
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.87 E-value=27 Score=29.93 Aligned_cols=173 Identities=10% Similarity=-0.016 Sum_probs=95.1
Q ss_pred hhcHHHHHHHHHhHHhcC----CCc----hhHhhhHHHHHhhcC-CCCHH--HHHHHHHHHHHHHHhCCCCCchhhHHHH
Q psy4772 46 CNLFSDELSYIEGLISHD----VRN----NSAWTQRYFVINHTT-QFTPE--VIQREIDYCRDKIQIAPKNESPWNYLRG 114 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~----P~~----~~a~~~~g~~l~~~~-~~~e~--~~~~Al~~~~kal~l~p~~~~aw~~~~g 114 (235)
.|+++-|..++.++=... |+. +...++-|.-+...+ +++++ -+++|.+.+++.-..+..++..-. .+.
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e-lr~ 84 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE-LRL 84 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH-HHH
Confidence 366777777777765544 433 345566666666666 65432 133444444333333455555442 344
Q ss_pred HHHhcc-------c---ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 115 AVVNAG-------E---KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQI 184 (235)
Q Consensus 115 ~il~~~-------~---~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~ 184 (235)
.++..+ + ..++|+...+.+-.-.|+.+..+.-+-.++.+.+ ..++..+.+.+.+.--+-.-..+-....
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~-~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSF-DEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccC-ChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 554432 1 2355555666666667887887766666666655 4677777888877754422222222222
Q ss_pred HHHH--cCCchHHHHHHHHHHH--hCCCChHHhHHHHHHHh
Q psy4772 185 IVEW--MGEPDEELALTAAILA--QDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 185 ~l~~--l~~~~~Al~~~~~ai~--ldp~n~~aw~~r~~~l~ 221 (235)
.+.. -.....+..++++.|. .+|...+ |.-+..+..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~ 203 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTR 203 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHH
Confidence 2211 1234677788888776 4444444 777776664
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.56 E-value=17 Score=28.49 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=62.6
Q ss_pred ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCch
Q psy4772 120 GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPD 193 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~ 193 (235)
.+...++-...+.+=-+.|+...+-..-|+++...| .|.+|+..++.+...-|..+-+--.+++++..+|+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg-~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARG-NYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcC-CHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 567788888888888889999999999999999999 5999999999999888888877778888888888854
No 329
>KOG1914|consensus
Probab=83.02 E-value=44 Score=31.82 Aligned_cols=116 Identities=9% Similarity=0.013 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKI 169 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al 169 (235)
+--+.+++++.+.-.+++.-....-....+.+-.+-|...|.+|=+.--.-.+++..-+.+=....++.+-|...++--+
T Consensus 349 ~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGL 428 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGL 428 (656)
T ss_pred hhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHH
Confidence 44466677777666666532122222223333345566666665544333345555555544444445677777777777
Q ss_pred HhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 170 KENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 170 ~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
+.+++.+.--+.-...+.++++-..+...|++++..
T Consensus 429 kkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 429 KKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 777777766666666667777777777777777765
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.83 E-value=9.7 Score=29.85 Aligned_cols=66 Identities=11% Similarity=-0.062 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN 155 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~ 155 (235)
.++......+=-+-|+.+..-. .-|+++..+|++.||+..+..+.+--|..+.+=--.++|+.-++
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~-~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDM-FDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHHHHhCCCccccch-hHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 3566667777778999999884 57999999999999999999999998888777777778887777
No 331
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=82.62 E-value=2.8 Score=22.50 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhCCCChHHhH
Q psy4772 160 QELKYIGEKIKENSKNYQVWR 180 (235)
Q Consensus 160 eal~~~~~al~~~P~n~~aw~ 180 (235)
.+...|+++++..|.+...|.
T Consensus 5 ~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 5 RARKIYERALEKFPKSVELWL 25 (33)
T ss_pred HHHHHHHHHHHHCCCChHHHH
Confidence 333344444444444444443
No 332
>KOG1258|consensus
Probab=82.38 E-value=13 Score=35.40 Aligned_cols=129 Identities=9% Similarity=0.043 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
.+.+-..|...|..-|-.+.-| -.-+..-.++|..+.+++.|++++.--|-+...|.+--..+.+...+-+.-...|++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW-~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYW-KKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3556667777777777777777 345555566777777777777777777777777776555544443233444456666
Q ss_pred HHHhCCCCh---HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 168 KIKENSKNY---QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 168 al~~~P~n~---~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
|....-.++ ..|-...-.....++...-...|++.++. |.+.-.-++..+
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei-P~~~~~~~f~~f 192 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI-PLHQLNRHFDRF 192 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh-hhhHhHHHHHHH
Confidence 665444433 45666555556666666777777777765 444444444433
No 333
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.98 E-value=3.1 Score=36.28 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=39.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
.+..+...|.+.+|+++.++++.+||-+.+.|.-+..++..+|+.-++..-|
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khy 336 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHY 336 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHH
Confidence 3445566778888888888888888888888888888888888865554433
No 334
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=81.82 E-value=42 Score=30.77 Aligned_cols=124 Identities=10% Similarity=-0.012 Sum_probs=72.4
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc-----
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA----- 119 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~----- 119 (235)
+.|..+.|.++-+.+-.+.|.-+-+|...--..+..|+.+ .||+..+...+..--....-...++.++..
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd-----~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWD-----GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChH-----HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 4577788888888888888888877776666666666543 455555433322111111111223222221
Q ss_pred -ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 120 -GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 120 -~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
.-+...|...-..++++.|+...+-.--+..|.+-|+ .-++-..++.+.+.+|.
T Consensus 241 ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~-~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 241 LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN-LRKGSKILETAWKAEPH 295 (531)
T ss_pred hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc-hhhhhhHHHHHHhcCCC
Confidence 1234566666667777777777766666666666663 56666666666666554
No 335
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=81.62 E-value=8.7 Score=27.15 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=15.1
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+..+++.+....|++++|+..++.||.
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445555555555555555555555554
No 336
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=81.24 E-value=50 Score=31.49 Aligned_cols=105 Identities=11% Similarity=0.049 Sum_probs=68.8
Q ss_pred HHHHHHhccc--ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHH---HHhCCCChHHhHHHHHHH
Q psy4772 112 LRGAVVNAGE--KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEK---IKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 112 ~~g~il~~~~--~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~a---l~~~P~n~~aw~~r~~~l 186 (235)
.++.++...+ ....=..+++.++.++|.+..........+.. . ..+...++.+ +.+. -.+..|.....++
T Consensus 347 ~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~-~---~~~~~Lle~i~~~l~~~-~s~~iwle~~~~~ 421 (547)
T PF14929_consen 347 LRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK-D---YSAEQLLEMIALHLDLV-PSHPIWLEFVSCF 421 (547)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh-H---HHHHHHHHHHHHHhhcC-CCchHHHHHHHHH
Confidence 3556666555 45667789999999999998887766555543 1 3334444432 3444 3567888888888
Q ss_pred HH-cCCchHHHHHHHHHH---------HhCCCChHHhHHHHHHHh
Q psy4772 187 EW-MGEPDEELALTAAIL---------AQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 187 ~~-l~~~~~Al~~~~~ai---------~ldp~n~~aw~~r~~~l~ 221 (235)
.+ .++++.--+....++ .-+-.|..+|..+...+.
T Consensus 422 l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~ 466 (547)
T PF14929_consen 422 LKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLP 466 (547)
T ss_pred HhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhh
Confidence 77 777764444555554 123567788888888775
No 337
>KOG1914|consensus
Probab=81.05 E-value=52 Score=31.34 Aligned_cols=121 Identities=15% Similarity=0.246 Sum_probs=69.5
Q ss_pred HHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 96 RDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 96 ~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
.+-|+.||.+..+| +.+-.=++.. .+++....|++...-.|..+.+|---......-+ +|+.--..+.+.|..- -|
T Consensus 10 ~~rie~nP~di~sw-~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~sk-dfe~VEkLF~RCLvkv-Ln 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSW-SQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASK-DFESVEKLFSRCLVKV-LN 85 (656)
T ss_pred HHHHhcCCccHHHH-HHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHH-hh
Confidence 45667778888888 3332222222 6777777888888888888877765443333333 3555445555544321 12
Q ss_pred hHHhHHH-HHHHHHcCCc-------hHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 176 YQVWRHR-QIIVEWMGEP-------DEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 176 ~~aw~~r-~~~l~~l~~~-------~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
...|..- ..+....+.. ..|.++.-.-+.+|+...+.|.-.+..+
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL 138 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFL 138 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 4466532 3333333332 2444555555668888888888777666
No 338
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=79.53 E-value=3.1 Score=24.61 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=19.3
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHc
Q psy4772 112 LRGAVVNAGEKSERALALTADAITM 136 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l 136 (235)
.+|.+-...++|++|+..|.++|++
T Consensus 6 ~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 6 LLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5677777778888888888887765
No 339
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.51 E-value=13 Score=25.93 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=41.1
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH---HHcCCchHHHHHHHHHHH
Q psy4772 148 REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV---EWMGEPDEELALTAAILA 204 (235)
Q Consensus 148 ~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l---~~l~~~~~Al~~~~~ai~ 204 (235)
|.-+..-. .-.+|+..+.++++..++....|.-+|.+. ...|+|.+.+++.-+=++
T Consensus 13 GlkLY~~~-~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 13 GLKLYHQN-ETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHhccc-hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444 368999999999999999988888777665 557888888876554443
No 340
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.95 E-value=21 Score=25.18 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=40.9
Q ss_pred hcccccHHHHHHHHHHHHc----CCC-----ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 118 NAGEKSERALALTADAITM----NPA-----NYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 118 ~~~~~~~eAl~~~~~al~l----~P~-----~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
...|++.+|++...+.+.. +.. ...++.+++.+...+| .+++|+..+++++++-
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G-~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFG-HYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence 4568888887766666643 322 2567888999999999 5999999999999854
No 341
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.91 E-value=3.2 Score=21.96 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=14.2
Q ss_pred HhHHHHHHHHHcCCchHHHHHHH
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTA 200 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~ 200 (235)
+.+.++.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666665543
No 342
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.15 E-value=8.6 Score=33.65 Aligned_cols=48 Identities=4% Similarity=-0.034 Sum_probs=39.7
Q ss_pred HHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHH
Q psy4772 151 LKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 151 l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
+...| .+.+|+..++++++.||-+.+.|..+..++..+|+--.++.-|
T Consensus 289 yle~g-~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khy 336 (361)
T COG3947 289 YLEAG-KPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHY 336 (361)
T ss_pred HHHcC-ChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHH
Confidence 33345 4899999999999999999999999999999999955555433
No 343
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=75.81 E-value=9.8 Score=34.98 Aligned_cols=57 Identities=9% Similarity=-0.023 Sum_probs=38.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 147 RREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 147 r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+..||.++++ -+-|+...-+.|-++|.++.-+.-.+.++.++.+|.+|-..+.-|..
T Consensus 234 lv~CYL~~rk-pdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 234 LVTCYLRMRK-PDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHhhhhcCC-CchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666664 57777777777777777777777777777777777776655544443
No 344
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=74.17 E-value=8.3 Score=33.41 Aligned_cols=56 Identities=9% Similarity=0.038 Sum_probs=49.6
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
++..+.-.+...|+++...+.+++.|.+||-+..+|..+.-++...|+..+++-.|
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y 210 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAY 210 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHH
Confidence 55566677788899999999999999999999999999999999999998887665
No 345
>KOG2300|consensus
Probab=73.20 E-value=84 Score=29.65 Aligned_cols=150 Identities=8% Similarity=-0.010 Sum_probs=91.8
Q ss_pred hcHHHHHHHHHhHHhcCCCch--------------hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc-----
Q psy4772 47 NLFSDELSYIEGLISHDVRNN--------------SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES----- 107 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~--------------~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~----- 107 (235)
|.|+++..+.+++|..-.+.. ..+.++..|-.-.|++. +|++....+....-+.+.
T Consensus 289 gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~-----~al~~i~dm~~w~~r~p~~~Llr 363 (629)
T KOG2300|consen 289 GYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYV-----EALEEIVDMKNWCTRFPTPLLLR 363 (629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHHhCCchHHHH
Confidence 678999999999998744322 34455566666667764 455444444444444443
Q ss_pred -----hhhHHHHHHHhcccccHHHHHHHHHHHHc-CCCChHHHHH--HHHHHHHhhHhHHHHHHHHHHHHHhCCCCh---
Q psy4772 108 -----PWNYLRGAVVNAGEKSERALALTADAITM-NPANYTVWQY--RREILKALNKDLHQELKYIGEKIKENSKNY--- 176 (235)
Q Consensus 108 -----aw~~~~g~il~~~~~~~eAl~~~~~al~l-~P~~~~aw~~--r~~~l~~l~~~~eeal~~~~~al~~~P~n~--- 176 (235)
.+ +.+|.--..-+-+++|-..|..|.++ +..+..|..+ .+.+|.+.++ -+ ..++-.=.+.|.|.
T Consensus 364 ~~~~~ih-~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~-~e---d~y~~ld~i~p~nt~s~ 438 (629)
T KOG2300|consen 364 AHEAQIH-MLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGD-AE---DLYKALDLIGPLNTNSL 438 (629)
T ss_pred HhHHHHH-HHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc-HH---HHHHHHHhcCCCCCCcc
Confidence 22 22333333456678888888888765 4445555544 4556655553 22 22222223455532
Q ss_pred -------HHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 177 -------QVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 177 -------~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
.+.+-.|......+++.||..+..+.+.+-
T Consensus 439 ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 439 SSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 366777888889999999999999998865
No 346
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=73.14 E-value=9.6 Score=29.51 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=35.8
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK 156 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~ 156 (235)
++.-....|+++.|+++.+.++..+|++..+-.-++.++..++.
T Consensus 76 ~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 76 RAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 44555667899999999999999999999999999999999984
No 347
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=71.90 E-value=23 Score=32.63 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=31.2
Q ss_pred HHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHH
Q psy4772 114 GAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKY 164 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~ 164 (235)
-.|+..+++.+-||...-+.|-+||.++--+..++.|+..|.+ |.+|-..
T Consensus 235 v~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeR-y~eAarS 284 (569)
T PF15015_consen 235 VTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLER-YSEAARS 284 (569)
T ss_pred HHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHH-HHHHHHH
Confidence 3455566666666666666666666666666666666666663 5555443
No 348
>KOG4814|consensus
Probab=69.35 E-value=21 Score=34.54 Aligned_cols=94 Identities=10% Similarity=0.084 Sum_probs=67.7
Q ss_pred hhHhhhhhh-----hhcHHHHHHHHHhHHhcCCCch------hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC
Q psy4772 37 VVAIAYSQK-----CNLFSDELSYIEGLISHDVRNN------SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN 105 (235)
Q Consensus 37 ~~~~~y~~~-----~~~~~~Al~~~~~aL~~~P~~~------~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~ 105 (235)
++++.+..+ ..+|..+++.|..-+.--|.+. ...-.+..|+..+.+. ++|++.+..|-+.+|++
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QL-----D~A~E~~~EAE~~d~~~ 427 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQL-----DNAVEVYQEAEEVDRQS 427 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHH-----HHHHHHHHHHHhhcccc
Confidence 445555543 2578999999999998877653 3444555666666555 48999999999999999
Q ss_pred CchhhHHHHHHHhcccccHHHHHHHHHHHHc
Q psy4772 106 ESPWNYLRGAVVNAGEKSERALALTADAITM 136 (235)
Q Consensus 106 ~~aw~~~~g~il~~~~~~~eAl~~~~~al~l 136 (235)
+-.- +..-.+...-+.+++||.+..+...+
T Consensus 428 ~l~q-~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 428 PLCQ-LLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHH-HHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 9765 33335555668899999988877754
No 349
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=68.88 E-value=8.7 Score=26.41 Aligned_cols=9 Identities=11% Similarity=-0.020 Sum_probs=4.0
Q ss_pred HhCCCChHH
Q psy4772 170 KENSKNYQV 178 (235)
Q Consensus 170 ~~~P~n~~a 178 (235)
+..|++...
T Consensus 41 ~~~pD~~~k 49 (75)
T cd02682 41 KNYPDSPTR 49 (75)
T ss_pred HhCCChHHH
Confidence 344444443
No 350
>KOG0546|consensus
Probab=68.81 E-value=5.3 Score=35.61 Aligned_cols=73 Identities=11% Similarity=-0.026 Sum_probs=49.3
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHH
Q psy4772 70 WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148 (235)
Q Consensus 70 ~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~ 148 (235)
..+.+.+....+.+. .|+-.+.-++..+++...++ +++|..+..+.++++|++....+....|.+...-.-..
T Consensus 278 ~~n~~~~~lk~~~~~-----~a~~~~~~~~~~~~s~tka~-~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~ 350 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRG-----GARFRTNEALRDERSKTKAH-YRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELE 350 (372)
T ss_pred ccchHHhcccccCCC-----cceeccccccccChhhCcHH-HHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHH
Confidence 334444455555554 46666677777777777777 57777777777788888888888888887766544433
No 351
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.28 E-value=25 Score=28.23 Aligned_cols=49 Identities=12% Similarity=0.268 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 158 ~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
.+..++..++.++..| ++..+...+.++...|+.++|.....++..+-|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4566677777777777 566677778888888888888888888888888
No 352
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=67.94 E-value=33 Score=23.51 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=18.5
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALN 155 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~ 155 (235)
.|.+|++.|..++...|+...--..|..+-..+.
T Consensus 28 ~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~ 61 (77)
T cd02683 28 CYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMD 61 (77)
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 3445555555666666665554445555554444
No 353
>PF12854 PPR_1: PPR repeat
Probab=67.19 E-value=12 Score=21.08 Aligned_cols=27 Identities=15% Similarity=0.003 Sum_probs=21.8
Q ss_pred ChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 175 NYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 175 n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
|..+|+-+...+-+.|+.++|++.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 556788888888888888888888764
No 354
>KOG0985|consensus
Probab=67.13 E-value=1.5e+02 Score=30.78 Aligned_cols=129 Identities=11% Similarity=0.086 Sum_probs=80.9
Q ss_pred CchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHH--cCCCChH
Q psy4772 65 RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAIT--MNPANYT 142 (235)
Q Consensus 65 ~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~--l~P~~~~ 142 (235)
.-+..|..+|.+....|.. .+|++.|.|+ ++++.+ ...-.+-...|.|++-+.+..-+=+ ..|.--.
T Consensus 1102 n~p~vWsqlakAQL~~~~v-----~dAieSyika-----dDps~y-~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLV-----KDAIESYIKA-----DDPSNY-LEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred CChHHHHHHHHHHHhcCch-----HHHHHHHHhc-----CCcHHH-HHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH
Confidence 3578899999998888765 4788888774 455544 2333455666777777766554433 2333322
Q ss_pred HHHHHHHHHHHhhH---------------------------hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHH
Q psy4772 143 VWQYRREILKALNK---------------------------DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEE 195 (235)
Q Consensus 143 aw~~r~~~l~~l~~---------------------------~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~A 195 (235)
.+.. +|-+.++ .|+.|.-+| .+.+-|..++..+-.+|.|+.|
T Consensus 1171 eLi~---AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y--------~~vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1171 ELIF---AYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLY--------SNVSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHH---HHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHH--------HHhhhHHHHHHHHHHHHHHHHH
Confidence 2221 1211111 233333333 3456788999999999999999
Q ss_pred HHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 196 LALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 196 l~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
.+..++| ++...|--.++++
T Consensus 1240 VD~aRKA-----ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1240 VDAARKA-----NSTKTWKEVCFAC 1259 (1666)
T ss_pred HHHhhhc-----cchhHHHHHHHHH
Confidence 9998876 5666787776664
No 355
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=66.93 E-value=1e+02 Score=28.85 Aligned_cols=50 Identities=12% Similarity=-0.002 Sum_probs=30.9
Q ss_pred HHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 166 GEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 166 ~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
...-+..|+.+..-...+.+..+.+.+.+|++.+...-+.-.+..+.|..
T Consensus 69 ~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld 118 (549)
T PF07079_consen 69 MELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLD 118 (549)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhh
Confidence 33344566666666666777777777777777766666654444444443
No 356
>KOG4151|consensus
Probab=66.44 E-value=14 Score=36.28 Aligned_cols=88 Identities=16% Similarity=0.081 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhCCCCCchhh---HHHHHH--HhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPKNESPWN---YLRGAV--VNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKY 164 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~aw~---~~~g~i--l~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~ 164 (235)
.+.--|..++.+-|.+...-. .++..+ +..++++.+++.-.+-++...|....+++-|+.+|..+++ ++-|+..
T Consensus 71 ~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k-~d~a~rd 149 (748)
T KOG4151|consen 71 GAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNK-LDLAVRD 149 (748)
T ss_pred ccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHH-HHHHHHH
Confidence 455557777777774432111 122222 3457889999999999999999999999999999999996 8999999
Q ss_pred HHHHHHhCCCChHH
Q psy4772 165 IGEKIKENSKNYQV 178 (235)
Q Consensus 165 ~~~al~~~P~n~~a 178 (235)
+.-....+|.+..+
T Consensus 150 l~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 150 LRIVEKMDPSNVSA 163 (748)
T ss_pred HHHHhcCCCCcchH
Confidence 88888999999543
No 357
>KOG0890|consensus
Probab=66.05 E-value=21 Score=39.36 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=79.1
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHH----HHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYF----VINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG 120 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~----~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~ 120 (235)
+++.|..|+-+++.- ..++.......+.+. ++...++.+. ++-...... ..++.. ..-......
T Consensus 1395 rc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDg------V~Gv~~~r~---a~~sl~--~qil~~e~~ 1462 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDG------VEGVSARRF---ADPSLY--QQILEHEAS 1462 (2382)
T ss_pred hhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcch------hhhHHHHhh---cCccHH--HHHHHHHhh
Confidence 457788888888885 444544444444444 3444555432 111111111 112211 222455667
Q ss_pred cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 121 EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 121 ~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
|.+..|..||++++.++|......+..-......+ .+...+-..+-.+...+..+.-|+..|.-
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~-~l~t~i~~~dg~~~~~se~~~~~~s~~~e 1526 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQ-HLSTEILHLDGLIINRSEEVDELNSLGVE 1526 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhccc-chhHHHhhhcchhhccCHHHHHHHHHHHH
Confidence 89999999999999999998877776666666666 37777777777777777777777666543
No 358
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=64.44 E-value=17 Score=28.13 Aligned_cols=33 Identities=9% Similarity=0.139 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 158 ~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
+.-|+++++.++..+|+|..+-.-++.++..+|
T Consensus 86 ~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 86 YQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555444443
No 359
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=63.91 E-value=9.4 Score=22.53 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=20.9
Q ss_pred hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhC
Q psy4772 68 SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIA 102 (235)
Q Consensus 68 ~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~ 102 (235)
+.+..+|-+-...++|+ .|++.|.++|.+.
T Consensus 2 dv~~~Lgeisle~e~f~-----qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFE-----QAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHH-----HHHHHHHHHHHHH
Confidence 45566777777666664 6888888888753
No 360
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.82 E-value=20 Score=24.68 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=8.8
Q ss_pred HHHhhHhHHHHHHHHHHHHH
Q psy4772 151 LKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 151 l~~l~~~~eeal~~~~~al~ 170 (235)
..+-| ++++|+.+|..+|+
T Consensus 16 ~D~~g-~y~eA~~~Y~~aie 34 (76)
T cd02681 16 RDQEG-RYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHcc-CHHHHHHHHHHHHH
Confidence 33344 25555555555444
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=62.54 E-value=15 Score=34.04 Aligned_cols=76 Identities=8% Similarity=0.042 Sum_probs=45.2
Q ss_pred HHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchH
Q psy4772 115 AVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDE 194 (235)
Q Consensus 115 ~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~ 194 (235)
.+..+.|+.+.|++.. ...++...|..+|..-...| +++-|..|++++ + -+..+.+++...|+.+.
T Consensus 326 eLAl~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g-~~~lAe~c~~k~-----~---d~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 326 ELALQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQG-NIELAEECYQKA-----K---DFSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTT-BHHHHHHHHHHC-----T----HHHHHHHHHHCT-HHH
T ss_pred HHHHhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcC-CHHHHHHHHHhh-----c---CccccHHHHHHhCCHHH
Confidence 4555566666665532 23446678888888888888 478888887774 2 34455566677777654
Q ss_pred HHHHHHHHHH
Q psy4772 195 ELALTAAILA 204 (235)
Q Consensus 195 Al~~~~~ai~ 204 (235)
-....+.|..
T Consensus 392 L~kl~~~a~~ 401 (443)
T PF04053_consen 392 LSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 362
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=58.73 E-value=85 Score=25.00 Aligned_cols=97 Identities=13% Similarity=-0.059 Sum_probs=61.5
Q ss_pred chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH---HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHH--
Q psy4772 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYT---VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH-- 181 (235)
Q Consensus 107 ~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~---aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~-- 181 (235)
.+| ..+|..+.+.|+.++|+++|.++.......-+ .+.+.-.+....+ ++.....++.++-..-.+ ..-|..
T Consensus 37 ~~~-~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~-d~~~v~~~i~ka~~~~~~-~~d~~~~n 113 (177)
T PF10602_consen 37 MAL-EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG-DWSHVEKYIEKAESLIEK-GGDWERRN 113 (177)
T ss_pred HHH-HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhc-cchHHHHH
Confidence 466 46888899999999999999998776533322 3444444444555 578888888776554333 222433
Q ss_pred -----HHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 182 -----RQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 182 -----r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
.|......++|.+|-+.|-.++...
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 3445555677777777766655444
No 363
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=58.60 E-value=16 Score=19.20 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=17.4
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+|+.+...+.+.|++++|.+.+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 355666666667777777777666544
No 364
>PF13041 PPR_2: PPR repeat family
Probab=58.45 E-value=25 Score=21.29 Aligned_cols=32 Identities=13% Similarity=0.022 Sum_probs=27.4
Q ss_pred ChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 175 NYQVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 175 n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
|..+|+-+...+.+.|++++|++.|+...+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 45688889999999999999999999998743
No 365
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.57 E-value=34 Score=28.85 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH
Q psy4772 87 VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYT 142 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~ 142 (235)
.++++|.....-++-+|.+...= +.+-.++...|++++|+..++-+-++.|++..
T Consensus 16 sL~dai~~a~~qVkakPtda~~R-hflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 16 SLQDAIGLARDQVKAKPTDAGGR-HFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred cHHHHHHHHHHHHhcCCccccch-hHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34577888888888888888765 34556777788888888888888888888754
No 366
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=57.46 E-value=26 Score=32.06 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=27.1
Q ss_pred hcHHHHHHHHHhHH--------hcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q psy4772 47 NLFSDELSYIEGLI--------SHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ 100 (235)
Q Consensus 47 ~~~~~Al~~~~~aL--------~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~ 100 (235)
|+|..|++.++.+= ++-+-+...+++.|++++.++||. +|+..|..+|.
T Consensus 136 GDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~-----DAir~f~~iL~ 192 (404)
T PF10255_consen 136 GDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYA-----DAIRTFSQILL 192 (404)
T ss_pred cCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 56666666555431 112223456666666666666654 46666666553
No 367
>KOG0128|consensus
Probab=57.11 E-value=2.2e+02 Score=28.64 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 162 LKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 162 l~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+..+++.++..|--.+.|..........|.+...-..+++++.-.+.+...|.-.+..+
T Consensus 298 ~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~ 356 (881)
T KOG0128|consen 298 LFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYL 356 (881)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhc
Confidence 34566677777888888888888888888888888889999998888899998888776
No 368
>KOG4151|consensus
Probab=57.03 E-value=18 Score=35.48 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=76.2
Q ss_pred HHHHhcccccHHHHHHHHHHHHcCCCChH----HHHHHHHHHHH--hhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHH
Q psy4772 114 GAVVNAGEKSERALALTADAITMNPANYT----VWQYRREILKA--LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVE 187 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l~P~~~~----aw~~r~~~l~~--l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~ 187 (235)
|..+...+.+.++.--|..++.+-|++.. ...+++-++.. ++ ++..++.-++-++...|..-.+.+-|+..+.
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~-~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLG-EYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCcc-chhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 45556666677776667777777774332 33344444444 35 4899999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHHhCCCChHHh
Q psy4772 188 WMGEPDEELALTAAILAQDAKNYHAW 213 (235)
Q Consensus 188 ~l~~~~~Al~~~~~ai~ldp~n~~aw 213 (235)
.+++++-|+....-....+|++.++-
T Consensus 139 al~k~d~a~rdl~i~~~~~p~~~~~~ 164 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRIVEKMDPSNVSAS 164 (748)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 99999999988888889999996653
No 369
>KOG2300|consensus
Probab=56.70 E-value=1.8e+02 Score=27.58 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCc---hhhHHHHHHHhc-ccccHHHHHHHHHHHHcC---CCChH----HHHHHHHHHHHh
Q psy4772 86 EVIQREIDYCRDKIQIAPKNES---PWNYLRGAVVNA-GEKSERALALTADAITMN---PANYT----VWQYRREILKAL 154 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~---aw~~~~g~il~~-~~~~~eAl~~~~~al~l~---P~~~~----aw~~r~~~l~~l 154 (235)
..++++|.+.+.+++..|.+-- .. .++|.++.. ....+-|....+++..+- |.++. +..-++.++..+
T Consensus 23 PkIkk~IkClqA~~~~~is~~veart~-LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~ 101 (629)
T KOG2300|consen 23 PKIKKCIKCLQAIFQFQISFLVEARTH-LQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQL 101 (629)
T ss_pred hhHHHHHHHHHHHhccCChHHHHHHHH-HHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHh
Confidence 3577888888888888887641 22 345655543 456788888888887653 55543 333445555555
Q ss_pred hHhHHHHHHHHHHHHHhCCCChHHhHHH-----HHHHHHcCCchHHHHH
Q psy4772 155 NKDLHQELKYIGEKIKENSKNYQVWRHR-----QIIVEWMGEPDEELAL 198 (235)
Q Consensus 155 ~~~~eeal~~~~~al~~~P~n~~aw~~r-----~~~l~~l~~~~~Al~~ 198 (235)
.+.+..+...+.++|++...++ +|..+ +.+..-..++..|++.
T Consensus 102 ~~s~~~~KalLrkaielsq~~p-~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 102 AQSFPPAKALLRKAIELSQSVP-YWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred cCCCchHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHhhhccchhHHHH
Confidence 5456778888888988877666 66654 3333445567777766
No 370
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=56.58 E-value=59 Score=27.35 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=22.1
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhh
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWT 71 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~ 71 (235)
..|+|+.|+...+.||..+=.-|+-+.
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~ 121 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFR 121 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCcccc
Confidence 458999999999999998766665554
No 371
>KOG2422|consensus
Probab=56.50 E-value=1.9e+02 Score=27.85 Aligned_cols=86 Identities=12% Similarity=0.216 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHhCCC-CCchhhHHHHHHHh-cccccHHHHHHHHHH-----HHcCCCChHHHHHHHHHHHHhhH--
Q psy4772 86 EVIQREIDYCRDKIQIAPK-NESPWNYLRGAVVN-AGEKSERALALTADA-----ITMNPANYTVWQYRREILKALNK-- 156 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~-~~~aw~~~~g~il~-~~~~~~eAl~~~~~a-----l~l~P~~~~aw~~r~~~l~~l~~-- 156 (235)
+.+.-|++.|+-+++++|. +|-+..+.. .++. +...|+--++.++.. |..-|......- .+..+.....
T Consensus 356 GC~rTA~E~cKlllsLdp~eDPl~~l~~I-D~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~A-lA~f~l~~~~~~ 433 (665)
T KOG2422|consen 356 GCWRTALEWCKLLLSLDPSEDPLGILYLI-DIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLA-LARFFLRKNEED 433 (665)
T ss_pred CChHHHHHHHHHHhhcCCcCCchhHHHHH-HHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHH-HHHHHHhcCChh
Confidence 3567899999999999999 887764433 4443 345677666666655 344455443321 2222322221
Q ss_pred hHHHHHHHHHHHHHhCC
Q psy4772 157 DLHQELKYIGEKIKENS 173 (235)
Q Consensus 157 ~~eeal~~~~~al~~~P 173 (235)
.-..|+..+.+|++..|
T Consensus 434 ~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 434 DRQSALNALLQALKHHP 450 (665)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 13568888888888888
No 372
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=56.32 E-value=17 Score=24.87 Aligned_cols=15 Identities=7% Similarity=0.321 Sum_probs=10.0
Q ss_pred hHhHHHHHHHHHHHHH
Q psy4772 155 NKDLHQELKYIGEKIK 170 (235)
Q Consensus 155 ~~~~eeal~~~~~al~ 170 (235)
| .+++|+.+|..+|+
T Consensus 20 ~-~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 G-DYEAAFEFYRAGVD 34 (75)
T ss_pred h-hHHHHHHHHHHHHH
Confidence 5 37777777776665
No 373
>KOG3807|consensus
Probab=56.09 E-value=1e+02 Score=27.83 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHc-----------------------CCCChHHHHH
Q psy4772 90 REIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITM-----------------------NPANYTVWQY 146 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l-----------------------~P~~~~aw~~ 146 (235)
+-|+.-..+|++||++.+++ ..++ -.+..-..+|-+.++++|+- ...+...+..
T Consensus 202 ~RI~~A~~ALeIN~eCA~Ay-vLLA--EEEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIK 278 (556)
T KOG3807|consen 202 ARIKAAYQALEINNECATAY-VLLA--EEEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIK 278 (556)
T ss_pred HHHHHHHHHHhcCchhhhHH-Hhhh--hhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHH
Confidence 34556678999999999998 3332 22222234444444444431 1122223333
Q ss_pred H--HHHHHHhhHhHHHHHHHHHHHHHhCC
Q psy4772 147 R--REILKALNKDLHQELKYIGEKIKENS 173 (235)
Q Consensus 147 r--~~~l~~l~~~~eeal~~~~~al~~~P 173 (235)
| +.|-.++|+ +.+|++.++.+.+-.|
T Consensus 279 RRLAMCARklGr-lrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 279 RRLAMCARKLGR-LREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHhhh-HHHHHHHHHHHhhhcc
Confidence 3 456667785 7888888888877777
No 374
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=55.00 E-value=1.9e+02 Score=27.27 Aligned_cols=146 Identities=11% Similarity=0.155 Sum_probs=93.4
Q ss_pred HHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc--ccccHHHHHHHHH
Q psy4772 55 YIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA--GEKSERALALTAD 132 (235)
Q Consensus 55 ~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~--~~~~~eAl~~~~~ 132 (235)
-++.-|+-||.|...|+.+-.-+-.+|.++ +.-+.|.+.+.-.|--+.+|.. .+-.+ ..++..--..|.+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~-----~~re~yeq~~~pfp~~~~aw~l---y~s~ELA~~df~svE~lf~r 101 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMD-----AEREMYEQLSSPFPIMEHAWRL---YMSGELARKDFRSVESLFGR 101 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHH-----HHHHHHHHhcCCCccccHHHHH---HhcchhhhhhHHHHHHHHHH
Confidence 566778889999999999888888877765 4557888888888888888842 22222 2345444455556
Q ss_pred HHHcCCCChHHHHHHHHHHHHhh-----H---hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC---C------chHH
Q psy4772 133 AITMNPANYTVWQYRREILKALN-----K---DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG---E------PDEE 195 (235)
Q Consensus 133 al~l~P~~~~aw~~r~~~l~~l~-----~---~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~---~------~~~A 195 (235)
+|..-=. ...|.---....+.. + ..-+|.+++-..+-.+|.+...|..-+..+.... . .+.-
T Consensus 102 CL~k~l~-ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 102 CLKKSLN-LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred HHhhhcc-HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 5553322 555553222222221 1 2456666666666788999999999888886533 2 3455
Q ss_pred HHHHHHHHHhCCCC
Q psy4772 196 LALTAAILAQDAKN 209 (235)
Q Consensus 196 l~~~~~ai~ldp~n 209 (235)
...|.+||..=-.|
T Consensus 181 R~~Y~ral~tP~~n 194 (660)
T COG5107 181 RNGYMRALQTPMGN 194 (660)
T ss_pred HHHHHHHHcCcccc
Confidence 56778887654433
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.81 E-value=51 Score=26.36 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC-ChHHhH
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK-NYQVWR 180 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~-n~~aw~ 180 (235)
..+..++..++.++..| ++..+...+.++..+|+ .++|.....++....|. .+.+|.
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~-~~eA~~~~~~~~~lyP~~~~~~~~ 183 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGD-PEEARQWLARARRLYPADEFAAAQ 183 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCcHHHHHHH
Confidence 35677778888888888 56677777888888994 79999999999999993 344444
No 376
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=53.70 E-value=30 Score=18.36 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=20.8
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+|+.+...+.+.|++++|.+.++....
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466777778888888888888887665
No 377
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=53.31 E-value=27 Score=23.92 Aligned_cols=19 Identities=5% Similarity=0.156 Sum_probs=12.7
Q ss_pred HHHhhHhHHHHHHHHHHHHH
Q psy4772 151 LKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 151 l~~l~~~~eeal~~~~~al~ 170 (235)
-..-| .+++|+.+|..+++
T Consensus 16 eD~~g-ny~eA~~lY~~ale 34 (75)
T cd02680 16 EDEKG-NAEEAIELYTEAVE 34 (75)
T ss_pred hhHhh-hHHHHHHHHHHHHH
Confidence 34455 47777777777776
No 378
>KOG4014|consensus
Probab=52.94 E-value=1.1e+02 Score=25.27 Aligned_cols=109 Identities=8% Similarity=-0.060 Sum_probs=69.0
Q ss_pred CCCCchhhHHHHHHHhcc-cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh-----HhHHHHHHHHHHHHHhCCCCh
Q psy4772 103 PKNESPWNYLRGAVVNAG-EKSERALALTADAITMNPANYTVWQYRREILKALN-----KDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 103 p~~~~aw~~~~g~il~~~-~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~-----~~~eeal~~~~~al~~~P~n~ 176 (235)
.+.|.+. +++|.-+... ..+++|.+.|.+-..-+ .++...+..|.-+ -+| ..+..|+.++..+.. -+.+
T Consensus 31 EK~Pe~C-~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~-~~GKgG~~~~l~~a~r~~~~aC~--~n~~ 105 (248)
T KOG4014|consen 31 EKRPESC-QLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYM-LAGKGGDDASLSKAIRPMKIACD--ANIP 105 (248)
T ss_pred cCCchHH-HHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhh-hcccCCCccCHHHHHHHHHHHhc--cCCH
Confidence 3455555 4566655543 34677777766665543 3444444444332 222 147889999998877 6678
Q ss_pred HHhHHHHHHHHHcCC-------chHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 177 QVWRHRQIIVEWMGE-------PDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~-------~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
++-.+.|.++..-.. .++|.++++++.. -.+.++-+++.-
T Consensus 106 ~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCd--l~~~~aCf~LS~ 152 (248)
T KOG4014|consen 106 QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACD--LEDGEACFLLST 152 (248)
T ss_pred HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhcc--CCCchHHHHHHH
Confidence 888998888744332 5789999999875 577776555543
No 379
>KOG3783|consensus
Probab=52.48 E-value=2.1e+02 Score=27.17 Aligned_cols=93 Identities=9% Similarity=-0.007 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHhhHhHHHHHHHHH
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPAN--YTVWQYRREILKALNKDLHQELKYIG 166 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~--~~aw~~r~~~l~~l~~~~eeal~~~~ 166 (235)
+...+...+...+.|+++.-. ...+.++...|..+.|+..++..+...-+. .-.++.+++++....+ |..|-..+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wl-l~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~-~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWL-LMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQ-YSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHH-HHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHH
Confidence 445566677778888888755 567788888888888899888888722221 2245578888888874 899999999
Q ss_pred HHHHhCCCChHHhHHHH
Q psy4772 167 EKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 167 ~al~~~P~n~~aw~~r~ 183 (235)
.+..++-=+...+.++.
T Consensus 328 ~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHhhhhhhHHHHHHHH
Confidence 98877654444444444
No 380
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=52.47 E-value=95 Score=23.07 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=45.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.+.....+.+++.++..++.++..+..+..++...++ ++.++.+.. .+.++..= . .+.+..+.+.+++
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~------~~ll~~l~~----~~~~yd~~-~-~~~~c~~~~l~~~ 87 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYAKYDP------QKEIERLDN----KSNHYDIE-K-VGKLCEKAKLYEE 87 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCH------HHHHHHHHh----ccccCCHH-H-HHHHHHHcCcHHH
Confidence 3567899999999999998888888888877765432 234444442 33444433 1 2234444555555
Q ss_pred HHHHHHH
Q psy4772 126 ALALTAD 132 (235)
Q Consensus 126 Al~~~~~ 132 (235)
++-.+.+
T Consensus 88 ~~~l~~k 94 (140)
T smart00299 88 AVELYKK 94 (140)
T ss_pred HHHHHHh
Confidence 5554433
No 381
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.21 E-value=44 Score=30.58 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=42.0
Q ss_pred HHhcccccHHHHHHHHHH-------H-HcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 116 VVNAGEKSERALALTADA-------I-TMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~a-------l-~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
++.-+|+|..||+..+-+ . +.-+-+...++|.|.+|.-+++ |.+|+..+..++-
T Consensus 131 vh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrR-Y~DAir~f~~iL~ 192 (404)
T PF10255_consen 131 VHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRR-YADAIRTFSQILL 192 (404)
T ss_pred HHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 455689999999876543 1 2245567788999999999995 9999999998775
No 382
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=50.58 E-value=2.2e+02 Score=26.81 Aligned_cols=126 Identities=12% Similarity=0.162 Sum_probs=84.1
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC
Q psy4772 94 YCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENS 173 (235)
Q Consensus 94 ~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P 173 (235)
-+..-|+-||.+...| +.+-.-+...|.+++..+.|++...-.|-...||.------...+ +|..--..+.+.|..-
T Consensus 30 rLRerIkdNPtnI~S~-fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~-df~svE~lf~rCL~k~- 106 (660)
T COG5107 30 RLRERIKDNPTNILSY-FQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARK-DFRSVESLFGRCLKKS- 106 (660)
T ss_pred HHHHHhhcCchhHHHH-HHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhh-hHHHHHHHHHHHHhhh-
Confidence 3566688899999999 777566667889999999999999999999988864211111111 2333333344443322
Q ss_pred CChHHhHHHHHHHHHcCC---------chHHHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 174 KNYQVWRHRQIIVEWMGE---------PDEELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 174 ~n~~aw~~r~~~l~~l~~---------~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
-+...|.---....+... .-+|.+++-.-+-.+|...+.|.-.+..+..
T Consensus 107 l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~ 164 (660)
T COG5107 107 LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEY 164 (660)
T ss_pred ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 235677655444444332 4577777777777999999999988887743
No 383
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.84 E-value=2.9e+02 Score=27.96 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=74.7
Q ss_pred HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCC--C------CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC
Q psy4772 69 AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPK--N------ESPWNYLRGAVVNAGEKSERALALTADAITMNPAN 140 (235)
Q Consensus 69 a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~--~------~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~ 140 (235)
.-...+|.+....++++ |-....++...-|. + ...|+-.+|.+....|+.+++.+..+.++..=|.+
T Consensus 417 Lvll~aW~~~s~~r~~e-----a~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 417 LVLLQAWLLASQHRLAE-----AETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA 491 (894)
T ss_pred HHHHHHHHHHHccChHH-----HHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc
Confidence 33445555666666653 33333333333332 1 12455567888888899999999999999988776
Q ss_pred hH-----HHHHHHHHHHHhhHhHHHHHHHHHHHHHh----CCCChHHhHHH--HHHHHHcC
Q psy4772 141 YT-----VWQYRREILKALNKDLHQELKYIGEKIKE----NSKNYQVWRHR--QIIVEWMG 190 (235)
Q Consensus 141 ~~-----aw~~r~~~l~~l~~~~eeal~~~~~al~~----~P~n~~aw~~r--~~~l~~l~ 190 (235)
.. +....+.+..-.| ++++|+...+.+.+. +.-....|... +.++...|
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G-~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRG-ELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred cchhhhhhhhhhhHHHHHhc-hHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 43 3444555555567 489999988888876 55566666654 66667777
No 384
>KOG1464|consensus
Probab=49.43 E-value=84 Score=27.53 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=23.2
Q ss_pred hcHHHHHHHHHhHHhcCCCchh----HhhhHHHHHhhcCCCC
Q psy4772 47 NLFSDELSYIEGLISHDVRNNS----AWTQRYFVINHTTQFT 84 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~----a~~~~g~~l~~~~~~~ 84 (235)
...++|+..|.++|.+.|+-.+ |+-..-.+.+++|+|.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~ 82 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYK 82 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHH
Confidence 4678888888888888876643 2333333444555543
No 385
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=49.27 E-value=2.3e+02 Score=26.61 Aligned_cols=137 Identities=9% Similarity=0.026 Sum_probs=87.3
Q ss_pred HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc---cccHHHHHHHHHHH----HcCCCCh
Q psy4772 69 AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG---EKSERALALTADAI----TMNPANY 141 (235)
Q Consensus 69 a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~---~~~~eAl~~~~~al----~l~P~~~ 141 (235)
.+...|.++..++++. +|...|.|+.....+.+... +..++..+ -.+.+.++..+..+ +..|+++
T Consensus 8 llc~Qgf~Lqkq~~~~-----esEkifskI~~e~~~~~f~l---keEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~ 79 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQ-----ESEKIFSKIYDEKESSPFLL---KEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSA 79 (549)
T ss_pred HHHHhhHHHHHHhhhh-----HHHHHHHHHHHHhhcchHHH---HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCch
Confidence 4556788888888775 57778888887766665433 21332221 12344454444443 4678888
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH---------------HhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ---------------VWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~---------------aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
......+.+..+-+ .+.+|++.+...-..-..+-. .=+..+-++-..|++.++...+++.+..-
T Consensus 80 ~l~LF~~L~~Y~~k-~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 80 YLPLFKALVAYKQK-EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred HHHHHHHHHHHHhh-hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 88888888888877 488888877665554222222 22345566778999999999988888765
Q ss_pred CCChHHhH
Q psy4772 207 AKNYHAWQ 214 (235)
Q Consensus 207 p~n~~aw~ 214 (235)
-+....|.
T Consensus 159 lkrE~~w~ 166 (549)
T PF07079_consen 159 LKRECEWN 166 (549)
T ss_pred hhhhhccc
Confidence 55444443
No 386
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=49.15 E-value=1.6e+02 Score=24.68 Aligned_cols=158 Identities=11% Similarity=0.161 Sum_probs=84.2
Q ss_pred hhhhhhhhcHHHHHHHHHhHHhcCCCc-hhHhhhHHHHHhhc-CCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q psy4772 40 IAYSQKCNLFSDELSYIEGLISHDVRN-NSAWTQRYFVINHT-TQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVV 117 (235)
Q Consensus 40 ~~y~~~~~~~~~Al~~~~~aL~~~P~~-~~a~~~~g~~l~~~-~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il 117 (235)
.......++|++.+.+..+++..+|+- .+=-..+..++... |. ...+........+......... ....+.
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~-----~R~s~R~l~~~e~~~~~~~~~~--~~~~i~ 80 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGS-----RRASWRILSSIEQKEENKGNEK--QVKLIK 80 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTTTHH--HHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcccc-----chHHHHhhhhHhhhhcccchhH--HHHHHH
Confidence 334455688999999999999997774 34444445554431 11 1234445555555555443333 122333
Q ss_pred hcccccHHHH-HHHHHHHH-----cCCC--C--hHHHHH--HHHHHHHhhH---------hHHHHHHHHHHHHH-----h
Q psy4772 118 NAGEKSERAL-ALTADAIT-----MNPA--N--YTVWQY--RREILKALNK---------DLHQELKYIGEKIK-----E 171 (235)
Q Consensus 118 ~~~~~~~eAl-~~~~~al~-----l~P~--~--~~aw~~--r~~~l~~l~~---------~~eeal~~~~~al~-----~ 171 (235)
....+.++.| ..+..++. +-|. + ..++++ +|..+..+-+ ..+.|...|++|++ +
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 160 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKEL 160 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhccc
Confidence 3333333332 23333332 1222 2 223332 4666655521 24678888888776 5
Q ss_pred CCCChH----HhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 172 NSKNYQ----VWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 172 ~P~n~~----aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
.|.||. +.++--+.+..+|+.++|++..+.|+.
T Consensus 161 ~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 161 PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 677764 444444555779999999887666654
No 387
>KOG0890|consensus
Probab=47.82 E-value=1.9e+02 Score=32.47 Aligned_cols=115 Identities=13% Similarity=0.030 Sum_probs=79.1
Q ss_pred CCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC-------
Q psy4772 102 APKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK------- 174 (235)
Q Consensus 102 ~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~------- 174 (235)
+.+-...| ...+.+-.+.|.++.|-.+.-+|.+.. -+.+...|+..+=.-| +-..|+..+++.+.++--
T Consensus 1666 ~~~~ge~w-LqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~g-d~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1666 KSRLGECW-LQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTG-DELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred cchhHHHH-HHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhc-cHHHHHHHHHHHHHhhcccccCCcc
Confidence 34445677 577777778899999998888888877 5667777887777777 468889999888864422
Q ss_pred ----ChHHhHHH-H-----HHHHHcCCc--hHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 175 ----NYQVWRHR-Q-----IIVEWMGEP--DEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 175 ----n~~aw~~r-~-----~~l~~l~~~--~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+...-.++ + .-+...+++ ..-+..|+.|++++|.....++|+|.-+
T Consensus 1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 22222222 2 222233443 3455789999999998888888888444
No 388
>KOG0276|consensus
Probab=47.57 E-value=57 Score=31.56 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=41.7
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 130 TADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 130 ~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
.++||++.|+. .+|-.+..++|+ ++.|..... ..++..-|-.+|.+....+++..|-+|+.+|
T Consensus 630 ~e~AL~~s~D~----d~rFelal~lgr-l~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 630 KEQALELSTDP----DQRFELALKLGR-LDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hHhhhhcCCCh----hhhhhhhhhcCc-HHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34444455444 456667777774 666665433 3467777888888888888888888877776
No 389
>KOG3783|consensus
Probab=47.17 E-value=1.9e+02 Score=27.44 Aligned_cols=71 Identities=11% Similarity=-0.027 Sum_probs=46.0
Q ss_pred CCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHc---CCC----ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 102 APKNESPWNYLRGAVVNAGEKSERALALTADAITM---NPA----NYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 102 ~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l---~P~----~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
++++.-.-.+.+|.++..+|+...|-.+|..+++. .-. .+-|++.++..+-.++.-+.++..++.+|-.-.
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 33333344456788888888888888888877732 111 244777777777777643677777777775544
No 390
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=47.06 E-value=57 Score=29.06 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 157 DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 157 ~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
.+-+|+..++.+++.+|.|++.-.-+..++..+|-...|.+.|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 3677888888888899999888888888888888888887776544
No 391
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=47.00 E-value=1.5e+02 Score=23.64 Aligned_cols=29 Identities=3% Similarity=-0.143 Sum_probs=17.1
Q ss_pred hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q psy4772 68 SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI 101 (235)
Q Consensus 68 ~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l 101 (235)
.++..+|.-+...|+++ +|++.|.++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~-----~A~k~y~~~~~~ 65 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLE-----EALKAYSRARDY 65 (177)
T ss_pred HHHHHHHHHHHHhhhHH-----HHHHHHHHHhhh
Confidence 55666666666666543 566666665544
No 392
>KOG0128|consensus
Probab=46.26 E-value=3.2e+02 Score=27.54 Aligned_cols=100 Identities=12% Similarity=0.113 Sum_probs=51.8
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHH--HH-HhcccccH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRG--AV-VNAGEKSE 124 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g--~i-l~~~~~~~ 124 (235)
.-...+.-+..-+.+++.+......+-.++...|.+.+ --..-.++..+.|-+++.| .... .+ ...-+...
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~k-----l~~ar~~~~~~~pl~~~lW-l~Wl~d~~~mt~s~~~~ 167 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEK-----LRQARLEMSEIAPLPPHLW-LEWLKDELSMTQSEERK 167 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHH-----HHHHHHHHHHhcCCChHHH-HHHHHHHHhhccCcchh
Confidence 34566666666666666666666666666666666542 1222233444445555544 1110 11 11124445
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKAL 154 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l 154 (235)
+....|+++|. +-.++..|-.++..+...
T Consensus 168 ~v~~~~ekal~-dy~~v~iw~e~~~y~~~~ 196 (881)
T KOG0128|consen 168 EVEELFEKALG-DYNSVPIWEEVVNYLVGF 196 (881)
T ss_pred HHHHHHHHHhc-ccccchHHHHHHHHHHhc
Confidence 55566666653 445556666665555444
No 393
>KOG1839|consensus
Probab=46.25 E-value=92 Score=32.59 Aligned_cols=137 Identities=12% Similarity=0.045 Sum_probs=64.8
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC--------chhhHHHHHHHhcccccHHHHHHHHHH
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE--------SPWNYLRGAVVNAGEKSERALALTADA 133 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~--------~aw~~~~g~il~~~~~~~eAl~~~~~a 133 (235)
+.|+.+..+..++.+...+|++. +|+....++.-+..+.. .++. .+...-...+....|+..+.++
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~-----~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~-nlal~~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQ-----EAIAQQRKACIISERVLGKDSPNTKLAYG-NLALYEFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchH-----HHHHhcccceeeechhccCCCHHHHHHhh-HHHHHHHhccCccchhhhHHHH
Confidence 35666666666666666666553 46665555544332221 1221 1211222233445555555555
Q ss_pred HHc--------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH-HhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 134 ITM--------NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ-VWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 134 l~l--------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~-aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+.+ .|.-...-.+.+.++..+++ ++.|+.+.+.|+..+-+-.. --..-+.++..+.+..++...++.++.
T Consensus 1042 ~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e-~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1042 LKLKLLSSGEDHPPTALSFINLELLLLGVEE-ADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALE 1120 (1236)
T ss_pred HHhhccccCCCCCchhhhhhHHHHHHhhHHH-HHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 542 34444445555666555553 56666666666663322111 002233344444445555555555544
Q ss_pred h
Q psy4772 205 Q 205 (235)
Q Consensus 205 l 205 (235)
-
T Consensus 1121 ~ 1121 (1236)
T KOG1839|consen 1121 H 1121 (1236)
T ss_pred H
Confidence 3
No 394
>KOG1839|consensus
Probab=45.39 E-value=2.1e+02 Score=30.18 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=71.2
Q ss_pred HHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHc-------C-CCChHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q psy4772 97 DKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITM-------N-PANYTVWQYRREILKALNKDLHQELKYIGEK 168 (235)
Q Consensus 97 kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l-------~-P~~~~aw~~r~~~l~~l~~~~eeal~~~~~a 168 (235)
+.-.+.|.....+ ..++.++..+|++++|+..-.++..+ + |+-..++.++.......+ ....|+..+.++
T Consensus 964 v~~~~h~~~~~~~-~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~-~~~~al~~~~ra 1041 (1236)
T KOG1839|consen 964 VMGVLHPEVASKY-RSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVK-NLSGALKSLNRA 1041 (1236)
T ss_pred hhhhcchhHHHHH-HHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhcc-CccchhhhHHHH
Confidence 3444566666666 35677777888888887766655532 2 444556666665555555 356666666666
Q ss_pred HH--------hCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 169 IK--------ENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 169 l~--------~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
.. ..|.-...-.+.+.++..+++++-|+.+.+.|....
T Consensus 1042 ~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1042 LKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 65 356666777888888888888888888888877643
No 395
>KOG4014|consensus
Probab=44.55 E-value=1.8e+02 Score=24.01 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc-------ccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE-------KSERALALTADAITMNPANYTVWQYRREIL 151 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~-------~~~eAl~~~~~al~l~P~~~~aw~~r~~~l 151 (235)
.+.|+..+..+-. -+.+.+. ...|.++.... +++.|++++.++..++ +.++.+++...+
T Consensus 89 l~~a~r~~~~aC~--~n~~~aC-~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~ 154 (248)
T KOG4014|consen 89 LSKAIRPMKIACD--ANIPQAC-RYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMY 154 (248)
T ss_pred HHHHHHHHHHHhc--cCCHHHH-hhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHH
Confidence 4455555555443 3344444 23455544321 1455555555555543 334444444333
No 396
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=44.34 E-value=44 Score=28.99 Aligned_cols=97 Identities=10% Similarity=0.098 Sum_probs=54.1
Q ss_pred cccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH---------hHHHHHHHHHHHHHhCCCCh------HHhHHHH
Q psy4772 119 AGEKSERALALTADAITMNPANYTVWQYRREILKALNK---------DLHQELKYIGEKIKENSKNY------QVWRHRQ 183 (235)
Q Consensus 119 ~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~---------~~eeal~~~~~al~~~P~n~------~aw~~r~ 183 (235)
..+..-.||..+...+.-.|.+..+....+.|++++-. ..+.|++..+.||-..-+-. -.-+.++
T Consensus 7 D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~ 86 (368)
T COG5091 7 DEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYF 86 (368)
T ss_pred cccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhhhH
Confidence 33444456666666666666666666666666666531 13556666666664332111 1223345
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCCCC-hHHhHH
Q psy4772 184 IIVEWMGEPDEELALTAAILAQDAKN-YHAWQH 215 (235)
Q Consensus 184 ~~l~~l~~~~~Al~~~~~ai~ldp~n-~~aw~~ 215 (235)
..+..+.+|+-|-.+|.+|..+-.++ -..|.-
T Consensus 87 v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~ 119 (368)
T COG5091 87 VHFFNIKDYELAQSYFKKAKNLYVDDTLPLWED 119 (368)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 55566777777778888877754333 334443
No 397
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=42.76 E-value=40 Score=23.06 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhCCCChH
Q psy4772 194 EELALTAAILAQDAKNYH 211 (235)
Q Consensus 194 ~Al~~~~~ai~ldp~n~~ 211 (235)
+|++.+..++...|+...
T Consensus 31 ~aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 31 EGIDLLMQVLKGTKDEAK 48 (77)
T ss_pred HHHHHHHHHHhhCCCHHH
Confidence 344444444555554433
No 398
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=42.71 E-value=1.5e+02 Score=25.15 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=42.5
Q ss_pred HhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 117 VNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 117 l~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
+..-+..+++|.....-++-+|.+...-+..-.+|--.| +|++|+.-++-+-+..|...
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaG-dw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAG-DWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcc-hHHHHHHHHHHHhhcCcccc
Confidence 334466777777777777778877777777777776677 47777777777777777653
No 399
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=42.67 E-value=3.2e+02 Score=26.28 Aligned_cols=150 Identities=14% Similarity=0.172 Sum_probs=93.9
Q ss_pred cHHHHHHHHHhHHh-cCCC---chhHhhhHHHHHhh-cCCCCHHHHHHHHHHHHHHHHhCCCCCchh-----hHHHHHHH
Q psy4772 48 LFSDELSYIEGLIS-HDVR---NNSAWTQRYFVINH-TTQFTPEVIQREIDYCRDKIQIAPKNESPW-----NYLRGAVV 117 (235)
Q Consensus 48 ~~~~Al~~~~~aL~-~~P~---~~~a~~~~g~~l~~-~~~~~e~~~~~Al~~~~kal~l~p~~~~aw-----~~~~g~il 117 (235)
...-|+.+++.+++ ..+. .+.+....|.++.. ..++ +.|...+.|++.+..++.-.- .+.+..++
T Consensus 36 LI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~-----~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~ 110 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENL-----DLAETYLEKAILLCERHRLTDLKFRCQFLLARIY 110 (608)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 45888999999995 2222 24566777877774 4433 478889999988886622111 01234455
Q ss_pred hcccccHHHHHHHHHHHHcCCC---ChHHHHHHHH-HHH--HhhHhHHHHHHHHHHHHHhC--CCChHHhHH----HHHH
Q psy4772 118 NAGEKSERALALTADAITMNPA---NYTVWQYRRE-ILK--ALNKDLHQELKYIGEKIKEN--SKNYQVWRH----RQII 185 (235)
Q Consensus 118 ~~~~~~~eAl~~~~~al~l~P~---~~~aw~~r~~-~l~--~l~~~~eeal~~~~~al~~~--P~n~~aw~~----r~~~ 185 (235)
.+.+... |+...+++|+..-. ....|..|-. +-. ..+ ++..|+..+++..... +.++.+... .+.+
T Consensus 111 ~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~-d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 111 FKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHK-DYNAALENLQSIAQLANQRGDPAVFVLASLSEALL 188 (608)
T ss_pred HhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 5555555 99999998876433 3344443322 111 123 5788999999988866 455554333 3555
Q ss_pred HHHcCCchHHHHHHHHHHH
Q psy4772 186 VEWMGEPDEELALTAAILA 204 (235)
Q Consensus 186 l~~l~~~~~Al~~~~~ai~ 204 (235)
....+..++.++..++++.
T Consensus 189 ~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 189 HLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred HhcCCCchhHHHHHHHHHH
Confidence 5667778888888887744
No 400
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=42.43 E-value=1.4e+02 Score=22.12 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHh
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVN 118 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~ 118 (235)
+..+.++..++..++.++...+ .+..++.
T Consensus 24 ~~l~~yLe~~~~~~~~~~~~~~-~li~ly~ 52 (140)
T smart00299 24 EELIPYLESALKLNSENPALQT-KLIELYA 52 (140)
T ss_pred HHHHHHHHHHHccCccchhHHH-HHHHHHH
Confidence 4566777777777766665553 3434443
No 401
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=42.07 E-value=62 Score=22.39 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhC
Q psy4772 158 LHQELKYIGEKIKEN 172 (235)
Q Consensus 158 ~eeal~~~~~al~~~ 172 (235)
|+.|..+.+++|+.+
T Consensus 5 ~~~A~~~I~kaL~~d 19 (79)
T cd02679 5 YKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHhhhh
Confidence 444555555544433
No 402
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=41.62 E-value=63 Score=17.91 Aligned_cols=34 Identities=6% Similarity=0.054 Sum_probs=17.0
Q ss_pred hHhhhHH--HHHhhcCCCCHHHHHHHHHHHHHHHHh
Q psy4772 68 SAWTQRY--FVINHTTQFTPEVIQREIDYCRDKIQI 101 (235)
Q Consensus 68 ~a~~~~g--~~l~~~~~~~e~~~~~Al~~~~kal~l 101 (235)
.+.+.+| .++.....-.+...++|+..|.++-+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4556666 333332212334556666666666543
No 403
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=40.67 E-value=50 Score=28.68 Aligned_cols=103 Identities=12% Similarity=0.061 Sum_probs=73.1
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCC-C----CHHHHHHHHHHHHHHHHhCCCCC-----chhhHHHHHHHh
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQ-F----TPEVIQREIDYCRDKIQIAPKNE-----SPWNYLRGAVVN 118 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~-~----~e~~~~~Al~~~~kal~l~p~~~-----~aw~~~~g~il~ 118 (235)
.-.|+..++..+..-|.|-.+....+.++...=. | .....+.|.+..++||.....-. .-.++++|..+.
T Consensus 11 ~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~ 90 (368)
T COG5091 11 PLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFF 90 (368)
T ss_pred hHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhh
Confidence 3468899999999999999999888888764310 1 11234578888899887654433 233467788888
Q ss_pred cccccHHHHHHHHHHHHcCC-CChHHHHHHHHHH
Q psy4772 119 AGEKSERALALTADAITMNP-ANYTVWQYRREIL 151 (235)
Q Consensus 119 ~~~~~~eAl~~~~~al~l~P-~~~~aw~~r~~~l 151 (235)
..++|+-|..+|.+|+.+-- +....|.-|-...
T Consensus 91 ~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~ 124 (368)
T COG5091 91 NIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETK 124 (368)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 89999999999999998754 3445666654443
No 404
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=39.60 E-value=1.9e+02 Score=27.90 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHH
Q psy4772 144 WQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELAL 198 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~ 198 (235)
..-++..+...++ .|.|-.+|++++..+|+| +.+.-+.-+.+.|-...|...
T Consensus 45 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 96 (578)
T PRK15490 45 MLKKAEFLHDVNE-TERAYALYETLIAQNNDE--ARYEYARRLYNTGLAKDAQLI 96 (578)
T ss_pred HHHHhhhhhhhhh-hHhHHHHHHHHHHhCCcc--hHHHHHHHHHhhhhhhHHHHH
Confidence 3344444444443 455555555555555552 333333334444443344333
No 405
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.60 E-value=60 Score=19.71 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 180 RHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 180 ~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
++++.+|...|+.+.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888999999988888884
No 406
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=38.85 E-value=1.3e+02 Score=26.67 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHH
Q psy4772 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTAD 132 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~ 132 (235)
..+-+|+...+.++..+|.+++.- ..+-.++..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~-LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLK-LLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHh
Confidence 345567777777777777777755 3444666667777777766643
No 407
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=38.23 E-value=1.1e+02 Score=25.77 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=13.6
Q ss_pred CCchHHHHHHHHHHHhCCC
Q psy4772 190 GEPDEELALTAAILAQDAK 208 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~ 208 (235)
++...|+.++++|+.+||+
T Consensus 192 ~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 192 ETLQLALALLQRAFQLNDK 210 (230)
T ss_pred ccHHHHHHHHHHHHHhCCC
Confidence 3456777777777777776
No 408
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=38.06 E-value=3.7e+02 Score=25.79 Aligned_cols=44 Identities=7% Similarity=-0.035 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHH---hCCC------ChHHhHHHHHHHHHcCCchHHHHHHH
Q psy4772 157 DLHQELKYIGEKIK---ENSK------NYQVWRHRQIIVEWMGEPDEELALTA 200 (235)
Q Consensus 157 ~~eeal~~~~~al~---~~P~------n~~aw~~r~~~l~~l~~~~~Al~~~~ 200 (235)
++..+...++.+.+ ..|. .+..++-.|......|+.+.|+..|.
T Consensus 376 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 376 DWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred CHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 35566665555444 3443 46788899999999999999999998
No 409
>KOG4279|consensus
Probab=37.30 E-value=1.6e+02 Score=29.59 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc---------cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHH
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAG---------EKSERALALTADAITMNPANYTVWQYRREILKALNKDLH 159 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~---------~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~e 159 (235)
.+|+.....+++++.....-.....|.|+..+ +..+.|++.|.++.+..|.-+.- .+.+.++..-|+.|+
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhhhhcc
Confidence 35555555555554443322213345554331 23455566666666666654433 333444444444444
Q ss_pred HHHHHHHHHHHhCC--------CChHHhHHHHHHHHH---cCCchHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 160 QELKYIGEKIKENS--------KNYQVWRHRQIIVEW---MGEPDEELALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 160 eal~~~~~al~~~P--------~n~~aw~~r~~~l~~---l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
..++.-.-..+++. .+-+-|-..|..+.. ..++.+++...+...++.| ..||-+..+
T Consensus 339 ns~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~---P~WYLkS~m 406 (1226)
T KOG4279|consen 339 NSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKP---PVWYLKSTM 406 (1226)
T ss_pred chHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCC---ceehHHHHH
Confidence 33332222222111 011111112222211 3356677777666666665 456655544
No 410
>PF15469 Sec5: Exocyst complex component Sec5
Probab=36.82 E-value=2.1e+02 Score=22.57 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=22.1
Q ss_pred CCchHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 190 GEPDEELALTAAILAQDAKNYHAWQHR 216 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~aw~~r 216 (235)
...++..+++...+.++|..-.+|..+
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 346778888999999999888888765
No 411
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=36.79 E-value=3.9e+02 Score=25.62 Aligned_cols=109 Identities=8% Similarity=-0.011 Sum_probs=65.6
Q ss_pred HhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHH
Q psy4772 117 VNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK-DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEE 195 (235)
Q Consensus 117 l~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~-~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~A 195 (235)
+...++.+||+...++-.. +...+-...-|+.++...++ .-..=..+++++++++|...............--....-
T Consensus 319 Ll~~~~l~eal~~~e~~c~-~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~~~~~~~L 397 (547)
T PF14929_consen 319 LLIGGRLKEALNELEKFCI-SSTCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQKDYSAEQL 397 (547)
T ss_pred EeccccHHHHHHHHHHhcc-CCCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhhHHHHHHH
Confidence 3345788999876665433 33444555677888888873 234556799999999999877776666555441111223
Q ss_pred HHHHHHHHHhCCCChHHhHHHHHHHhhcCCc
Q psy4772 196 LALTAAILAQDAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 196 l~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~ 226 (235)
++.+.--+.+.|.++--+-+..-.+...++.
T Consensus 398 le~i~~~l~~~~s~~iwle~~~~~l~~~~~~ 428 (547)
T PF14929_consen 398 LEMIALHLDLVPSHPIWLEFVSCFLKNPSRF 428 (547)
T ss_pred HHHHHHHhhcCCCchHHHHHHHHHHhccccc
Confidence 3333344566666665555544444545554
No 412
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.27 E-value=2.4e+02 Score=23.09 Aligned_cols=128 Identities=8% Similarity=-0.029 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhCCCCCchhh-HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHH-----HHHHHHHHHhhHhHHHHHH
Q psy4772 90 REIDYCRDKIQIAPKNESPWN-YLRGAVVNAGEKSERALALTADAITMNPANYTVW-----QYRREILKALNKDLHQELK 163 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~aw~-~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw-----~~r~~~l~~l~~~~eeal~ 163 (235)
+|+..|..+-.-+-..|...- .+.|.++...|+...|+..|+.+-.-.|- +++. ..-++++..-| .|++--.
T Consensus 76 ~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g-sy~dV~s 153 (221)
T COG4649 76 DALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG-SYDDVSS 153 (221)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc-cHHHHHH
Confidence 466666655555555554331 34577788889999999999988765432 3332 23355565566 4665444
Q ss_pred HHHH-HHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 164 YIGE-KIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 164 ~~~~-al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
-++- +-..+|--..+---+|+.-.+-|++.+|..+|..... |..-+..-.+|+.++
T Consensus 154 rvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 154 RVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 4443 2346677777888889999999999999999998877 766666667777766
No 413
>KOG4279|consensus
Probab=34.26 E-value=3.2e+02 Score=27.56 Aligned_cols=154 Identities=17% Similarity=0.256 Sum_probs=94.1
Q ss_pred hhhccCCCCCC----CCCCchhHhhhh----hhhhcHHHHHHHHHhHHhcCCC-chhHhhhHHHHHhhc---CCCCH-HH
Q psy4772 21 EWKDLRPIPQD----DGPTPVVAIAYS----QKCNLFSDELSYIEGLISHDVR-NNSAWTQRYFVINHT---TQFTP-EV 87 (235)
Q Consensus 21 ~~~~~~~~~~~----~~~~~~~~~~y~----~~~~~~~~Al~~~~~aL~~~P~-~~~a~~~~g~~l~~~---~~~~e-~~ 87 (235)
..+||..||.- ...+-.+.-+|+ ++-|+-.+|+...-.+++.+.. .++.+...|+++..+ ..|.. +.
T Consensus 223 LVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s 302 (1226)
T KOG4279|consen 223 LVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAES 302 (1226)
T ss_pred HHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhh
Confidence 56777777732 112223333333 2237789999988888887544 578888888887653 23322 34
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc-ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH----------
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE-KSERALALTADAITMNPANYTVWQYRREILKALNK---------- 156 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~-~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~---------- 156 (235)
.+.|+..|.+++...|.-+..-| .+.++...| .++..++.=.....++ .+..|.-++.+|..
T Consensus 303 ~~~a~~WyrkaFeveP~~~sGIN--~atLL~aaG~~Fens~Elq~IgmkLn-----~LlgrKG~leklq~YWdV~~y~~a 375 (1226)
T KOG4279|consen 303 LNHAIEWYRKAFEVEPLEYSGIN--LATLLRAAGEHFENSLELQQIGMKLN-----SLLGRKGALEKLQEYWDVATYFEA 375 (1226)
T ss_pred HHHHHHHHHHHhccCchhhcccc--HHHHHHHhhhhccchHHHHHHHHHHH-----HHhhccchHHHHHHHHhHHHhhhh
Confidence 56799999999999999999885 456665555 4565555544444443 23334444555432
Q ss_pred -----hHHHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 157 -----DLHQELKYIGEKIKENSKNYQVWRHRQI 184 (235)
Q Consensus 157 -----~~eeal~~~~~al~~~P~n~~aw~~r~~ 184 (235)
++.+++..-+...++.| .+||.++.
T Consensus 376 sVLAnd~~kaiqAae~mfKLk~---P~WYLkS~ 405 (1226)
T KOG4279|consen 376 SVLANDYQKAIQAAEMMFKLKP---PVWYLKST 405 (1226)
T ss_pred hhhccCHHHHHHHHHHHhccCC---ceehHHHH
Confidence 34455555555555554 46887653
No 414
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=34.25 E-value=1.4e+02 Score=19.93 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHcCCCC
Q psy4772 124 ERALALTADAITMNPAN 140 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~ 140 (235)
.+|++.+..++...|+.
T Consensus 30 ~~aie~l~~~~k~e~~~ 46 (75)
T cd02678 30 QHALEYFMHALKYEKNP 46 (75)
T ss_pred HHHHHHHHHHHhhCCCH
Confidence 33444444444455543
No 415
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=34.12 E-value=1.3e+02 Score=19.53 Aligned_cols=15 Identities=40% Similarity=0.441 Sum_probs=7.2
Q ss_pred ccccHHHHHHHHHHH
Q psy4772 120 GEKSERALALTADAI 134 (235)
Q Consensus 120 ~~~~~eAl~~~~~al 134 (235)
.|++++|+.+|..++
T Consensus 18 ~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 18 AGNYEEALELYKEAI 32 (69)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 445555555444444
No 416
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=32.95 E-value=81 Score=16.66 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=20.9
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
..|+.+..++.+.|+++.+...++...+
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3567777778888888888888777655
No 417
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=30.74 E-value=70 Score=29.16 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=24.9
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCC
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQF 83 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~ 83 (235)
.+..|+.++++|.. -+.|+.|...+-+++.+|+.
T Consensus 333 l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 333 LIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcc
Confidence 35778888887766 77888898888888888853
No 418
>KOG2997|consensus
Probab=29.70 E-value=93 Score=27.67 Aligned_cols=37 Identities=8% Similarity=-0.011 Sum_probs=27.8
Q ss_pred HHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 183 QIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 183 ~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
|....+-|..-+|+.+|..|+.+.|+-.+.+.+..-.
T Consensus 26 av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r~l~~~ 62 (366)
T KOG2997|consen 26 AVLKEQDGSLYDAINFYRDALQIVPDIESKYRYLRSP 62 (366)
T ss_pred HHHHhhcCcHHHHHHHHHhhhcCCchHHHHHHHHhhh
Confidence 3445667788889999999999999888887744443
No 419
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=29.38 E-value=1.8e+02 Score=26.91 Aligned_cols=15 Identities=7% Similarity=0.395 Sum_probs=11.4
Q ss_pred hcHHHHHHHHHhHHh
Q psy4772 47 NLFSDELSYIEGLIS 61 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~ 61 (235)
|+|.+|+..|+.+|.
T Consensus 218 gKF~eA~~~Fr~iL~ 232 (422)
T PF06957_consen 218 GKFEEAIEIFRSILH 232 (422)
T ss_dssp T-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 678888888888776
No 420
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=28.27 E-value=1.6e+02 Score=26.42 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCC---CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 159 HQELKYIGEKIKENS---KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 159 eeal~~~~~al~~~P---~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
++.+..++.+|+.-| +....|..++.+....|.+++.+..|+.||.....
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 444445555555444 33445666666666666666666666666665544
No 421
>KOG0985|consensus
Probab=28.09 E-value=7.4e+02 Score=26.19 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=16.2
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYF 75 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~ 75 (235)
+...+-++.+++++- +|+-.+-..++-.
T Consensus 998 dLp~eLIELLEKIvL-~~S~Fse~~nLQn 1025 (1666)
T KOG0985|consen 998 DLPNELIELLEKIVL-DNSVFSENRNLQN 1025 (1666)
T ss_pred CCcHHHHHHHHHHhc-CCcccccchhhhh
Confidence 345788888888764 4444444444333
No 422
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.82 E-value=2.3e+02 Score=23.70 Aligned_cols=22 Identities=18% Similarity=0.010 Sum_probs=13.7
Q ss_pred HHHHHhcccccHHHHHHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAI 134 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al 134 (235)
+|.-+...|++++|+++++.++
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555666677776666664
No 423
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=26.87 E-value=2.4e+02 Score=26.02 Aligned_cols=39 Identities=10% Similarity=0.009 Sum_probs=26.3
Q ss_pred HHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCc
Q psy4772 187 EWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 187 ~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~ 226 (235)
.+.++|.-|-.+.++.|++.|....+-.-| .+++.-.+.
T Consensus 311 ~K~KNf~tAa~FArRLLel~p~~~~a~qAr-Kil~~~e~~ 349 (422)
T PF06957_consen 311 FKLKNFITAASFARRLLELNPSPEVAEQAR-KILQACERN 349 (422)
T ss_dssp CCTTBHHHHHHHHHHHHCT--SCHHHHHHH-HHHHHHCCS
T ss_pred HHhccHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHhcC
Confidence 668889999999999999999887664444 444444443
No 424
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=26.68 E-value=96 Score=28.32 Aligned_cols=32 Identities=13% Similarity=0.329 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 158 ~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
...|+.++++|.. -+.|..|...+-++..+|+
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 4456667776655 6788899999999988887
No 425
>KOG1464|consensus
Probab=26.42 E-value=1.8e+02 Score=25.49 Aligned_cols=48 Identities=8% Similarity=0.082 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHHHHcCCCChH----HHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 122 KSERALALTADAITMNPANYT----VWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~----aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
..++||..|++++++.|.-.. |+-..-.+..+++ .+++-+..|.+.+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~-~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLG-NYKEMMERYKQLLT 93 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 679999999999999987643 3334445667778 48999999998876
No 426
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.83 E-value=2.2e+02 Score=19.40 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=7.8
Q ss_pred ccccHHHHHHHHHHHH
Q psy4772 120 GEKSERALALTADAIT 135 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~ 135 (235)
.|+|++|+.+|..+|+
T Consensus 19 ~g~y~eA~~~Y~~aie 34 (76)
T cd02681 19 EGRYSEAVFYYKEAAQ 34 (76)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4455555555544443
No 427
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=25.58 E-value=1.2e+02 Score=16.24 Aligned_cols=11 Identities=9% Similarity=0.582 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy4772 89 QREIDYCRDKI 99 (235)
Q Consensus 89 ~~Al~~~~kal 99 (235)
++|+..+.++-
T Consensus 22 ~~A~~~~~~Aa 32 (36)
T smart00671 22 EKALEYYKKAA 32 (36)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 428
>KOG2997|consensus
Probab=23.64 E-value=1.4e+02 Score=26.55 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=27.4
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
+..|....+.|..-+||..|..|+.+-|+--.++.
T Consensus 23 ~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 23 YEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 45556667778888889988888888888777766
No 429
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=23.50 E-value=1.7e+02 Score=18.94 Aligned_cols=29 Identities=7% Similarity=-0.024 Sum_probs=17.9
Q ss_pred hHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 176 YQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 176 ~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+.-..+....+..+|++++|.++++....
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344445556778888888887777654
No 430
>KOG3540|consensus
Probab=23.47 E-value=5e+02 Score=24.53 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCCCCCchh-hHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 90 REIDYCRDKIQIAPKNESPW-NYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 90 ~Al~~~~kal~l~p~~~~aw-~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
.|++.|..||+-+|.-++-- +..+..+....++-.-.|..|+.++..+|+-+
T Consensus 330 ~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkA 382 (615)
T KOG3540|consen 330 DALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKA 382 (615)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 35666666666666655311 11111222222333444556666666666543
No 431
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=21.36 E-value=2.6e+02 Score=18.50 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHcCCC
Q psy4772 124 ERALALTADAITMNPA 139 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~ 139 (235)
.+|++.+.+++...|+
T Consensus 32 ~~a~e~l~~~~~~~~~ 47 (77)
T smart00745 32 KKAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHHhccCCC
Confidence 3344444444445554
No 432
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=21.17 E-value=1.7e+02 Score=21.97 Aligned_cols=35 Identities=20% Similarity=0.120 Sum_probs=27.4
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
..+|..+...|++++++.+|-+||...|.-.....
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~ 101 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQ 101 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 35788888889999999999999999988765443
No 433
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=21.12 E-value=2.6e+02 Score=18.47 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=6.2
Q ss_pred cccHHHHHHHHHHH
Q psy4772 121 EKSERALALTADAI 134 (235)
Q Consensus 121 ~~~~eAl~~~~~al 134 (235)
|++++|+.+|..++
T Consensus 20 g~~~~Al~~Y~~a~ 33 (75)
T cd02656 20 GNYEEALELYKEAL 33 (75)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 434
>KOG2581|consensus
Probab=21.00 E-value=1.8e+02 Score=26.84 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=0.0
Q ss_pred hhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q psy4772 109 WNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILK 152 (235)
Q Consensus 109 w~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~ 152 (235)
++|..|.|....++|.+|.+++-.|+++.|. ..|.-.+..+..
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq-~~alGf~q~v~k 291 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQ-HAALGFRQQVNK 291 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcc-hhhhhHHHHHHH
No 435
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=20.79 E-value=9.1e+02 Score=24.65 Aligned_cols=104 Identities=18% Similarity=0.123 Sum_probs=61.3
Q ss_pred hcHHHHHHHHHhHHhcCCC---------chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchh----hHHH
Q psy4772 47 NLFSDELSYIEGLISHDVR---------NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPW----NYLR 113 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~---------~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw----~~~~ 113 (235)
..+.+|..+.+++-..-|. .+++---+|.|....|+.+ +|+.....++..=|.+...- ....
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e-----~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPE-----EAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 4556666666665555444 2345556677777776653 67777777777776665311 1224
Q ss_pred HHHHhcccccHHHHHHHHHHHHc----CCCChHHHHHH--HHHHHHhh
Q psy4772 114 GAVVNAGEKSERALALTADAITM----NPANYTVWQYR--REILKALN 155 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l----~P~~~~aw~~r--~~~l~~l~ 155 (235)
|.+....|++.+|+.....+.++ +--+..+|... ..++...|
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 45555677788888877777766 55555555443 44444444
No 436
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=20.64 E-value=1.8e+02 Score=16.47 Aligned_cols=23 Identities=4% Similarity=0.135 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhCCCChHHhHH
Q psy4772 158 LHQELKYIGEKIKENSKNYQVWRH 181 (235)
Q Consensus 158 ~eeal~~~~~al~~~P~n~~aw~~ 181 (235)
++.|...|++.+..+|. +..|..
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHH
Confidence 56677777777777654 555553
No 437
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=20.58 E-value=71 Score=19.45 Aligned_cols=34 Identities=9% Similarity=-0.091 Sum_probs=21.7
Q ss_pred CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 172 NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 172 ~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
.|+....+......+...+.+...++.+++|+.+
T Consensus 11 FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw~~ 44 (46)
T PF06855_consen 11 FPKQETDFDEISSYLESNYDYLESMEIFDRAWSL 44 (46)
T ss_dssp S-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 4666666666666666666677777777777653
No 438
>KOG0276|consensus
Probab=20.16 E-value=8.4e+02 Score=24.01 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=61.7
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERAL 127 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl 127 (235)
+|-+.+.+.++||.+.|+.. +|=.+...+|+++ .|.+ |....++..-| -.+|.+....+++.-|-
T Consensus 622 ~Fle~~g~~e~AL~~s~D~d----~rFelal~lgrl~-----iA~~-----la~e~~s~~Kw-~~Lg~~al~~~~l~lA~ 686 (794)
T KOG0276|consen 622 HFLESQGMKEQALELSTDPD----QRFELALKLGRLD-----IAFD-----LAVEANSEVKW-RQLGDAALSAGELPLAS 686 (794)
T ss_pred hHhhhccchHhhhhcCCChh----hhhhhhhhcCcHH-----HHHH-----HHHhhcchHHH-HHHHHHHhhcccchhHH
Confidence 34455555555666655543 2333444555543 2222 22344566667 46777777777777777
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHH
Q psy4772 128 ALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTA 200 (235)
Q Consensus 128 ~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~ 200 (235)
+|+.++-. |..+-.++...|. .+-+.-+-...+..-+|-.|. .++...|++++.++.+.
T Consensus 687 EC~~~a~d--------~~~LlLl~t~~g~--~~~l~~la~~~~~~g~~N~AF----~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 687 ECFLRARD--------LGSLLLLYTSSGN--AEGLAVLASLAKKQGKNNLAF----LAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHhhcc--------hhhhhhhhhhcCC--hhHHHHHHHHHHhhcccchHH----HHHHHcCCHHHHHHHHH
Confidence 77776543 2222223333332 233333334444444442222 23455666666655543
Done!