Query psy4772
Match_columns 235
No_of_seqs 144 out of 1477
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 17:19:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dra_A Protein farnesyltransfe 100.0 5.2E-40 1.8E-44 285.4 20.2 208 18-230 4-240 (306)
2 3q7a_A Farnesyltransferase alp 100.0 1.9E-38 6.4E-43 279.4 20.9 211 10-226 17-258 (349)
3 2h6f_A Protein farnesyltransfe 100.0 1.2E-36 4.2E-41 271.7 18.6 218 1-225 51-289 (382)
4 3dss_A Geranylgeranyl transfer 100.0 2.9E-30 1E-34 226.0 18.1 175 50-225 47-243 (331)
5 1dce_A Protein (RAB geranylger 100.0 6.8E-30 2.3E-34 238.6 15.8 176 50-226 46-242 (567)
6 2pl2_A Hypothetical conserved 100.0 1.9E-28 6.3E-33 201.0 19.9 182 45-234 17-209 (217)
7 2h6f_A Protein farnesyltransfe 100.0 4.7E-29 1.6E-33 222.6 14.7 166 58-230 88-255 (382)
8 3dra_A Protein farnesyltransfe 100.0 1.7E-28 5.9E-33 212.9 16.6 154 48-225 31-195 (306)
9 3q7a_A Farnesyltransferase alp 100.0 5.3E-28 1.8E-32 212.8 12.8 155 65-225 52-216 (349)
10 3vtx_A MAMA; tetratricopeptide 99.9 4.5E-26 1.5E-30 180.1 18.1 160 45-211 17-176 (184)
11 3dss_A Geranylgeranyl transfer 99.9 1.6E-25 5.6E-30 195.9 20.4 165 49-220 90-280 (331)
12 1dce_A Protein (RAB geranylger 99.9 1.3E-25 4.3E-30 209.8 16.3 145 77-226 38-194 (567)
13 4gyw_A UDP-N-acetylglucosamine 99.9 3.3E-25 1.1E-29 212.1 17.4 157 46-209 22-178 (723)
14 2pl2_A Hypothetical conserved 99.9 1.3E-24 4.3E-29 178.0 17.0 162 64-233 2-174 (217)
15 3vtx_A MAMA; tetratricopeptide 99.9 3.2E-24 1.1E-28 169.4 17.3 163 64-233 2-164 (184)
16 4i17_A Hypothetical protein; T 99.9 1.8E-24 6.2E-29 176.7 16.0 171 46-223 20-227 (228)
17 4gyw_A UDP-N-acetylglucosamine 99.9 1.7E-24 5.9E-29 207.2 17.0 163 62-231 4-166 (723)
18 4eqf_A PEX5-related protein; a 99.9 1.9E-23 6.6E-28 181.2 21.2 181 45-232 77-303 (365)
19 4abn_A Tetratricopeptide repea 99.9 3E-24 1E-28 195.8 16.5 178 46-231 115-313 (474)
20 1w3b_A UDP-N-acetylglucosamine 99.9 1.9E-23 6.4E-28 183.0 20.9 178 46-230 80-257 (388)
21 1w3b_A UDP-N-acetylglucosamine 99.9 2.3E-23 7.8E-28 182.5 20.6 177 47-230 183-359 (388)
22 2q7f_A YRRB protein; TPR, prot 99.9 2.8E-23 9.6E-28 169.1 17.1 179 46-231 36-214 (243)
23 2pzi_A Probable serine/threoni 99.9 4.3E-24 1.5E-28 203.0 14.0 174 44-225 402-583 (681)
24 3uq3_A Heat shock protein STI1 99.9 4.3E-23 1.5E-27 169.0 16.0 179 46-232 18-229 (258)
25 4eqf_A PEX5-related protein; a 99.9 8.5E-23 2.9E-27 177.2 18.8 182 46-229 112-346 (365)
26 3u4t_A TPR repeat-containing p 99.9 6.7E-23 2.3E-27 170.1 17.4 172 46-225 16-191 (272)
27 1fch_A Peroxisomal targeting s 99.9 1.6E-22 5.5E-27 174.6 20.0 138 90-229 199-349 (368)
28 3hym_B Cell division cycle pro 99.9 2E-22 6.7E-27 170.8 20.2 180 46-232 35-215 (330)
29 4ga2_A E3 SUMO-protein ligase 99.9 6.2E-24 2.1E-28 164.7 9.9 139 86-226 11-150 (150)
30 1fch_A Peroxisomal targeting s 99.9 4.7E-22 1.6E-26 171.7 22.3 181 45-232 76-307 (368)
31 3hym_B Cell division cycle pro 99.9 1.7E-22 5.8E-27 171.2 18.5 175 48-229 106-289 (330)
32 3ieg_A DNAJ homolog subfamily 99.9 2.5E-22 8.4E-27 171.5 17.7 179 46-231 16-209 (359)
33 2vq2_A PILW, putative fimbrial 99.9 6.4E-22 2.2E-26 158.7 18.8 178 46-230 21-202 (225)
34 2q7f_A YRRB protein; TPR, prot 99.9 6.3E-22 2.2E-26 161.1 18.3 171 46-223 70-240 (243)
35 4abn_A Tetratricopeptide repea 99.9 1.9E-22 6.4E-27 183.9 16.8 179 47-233 82-281 (474)
36 4i17_A Hypothetical protein; T 99.9 1.3E-22 4.6E-27 165.5 13.6 157 63-226 3-169 (228)
37 4ga2_A E3 SUMO-protein ligase 99.9 1.2E-22 4.1E-27 157.4 11.1 139 46-191 10-149 (150)
38 4gco_A Protein STI-1; structur 99.9 2.1E-22 7.3E-27 151.9 12.1 122 97-220 4-125 (126)
39 2ho1_A Type 4 fimbrial biogene 99.9 9.8E-22 3.4E-26 161.6 17.0 179 46-231 50-230 (252)
40 3cv0_A Peroxisome targeting si 99.9 2E-21 6.8E-26 164.4 18.1 178 47-231 69-261 (327)
41 3urz_A Uncharacterized protein 99.9 3.3E-22 1.1E-26 162.6 12.4 165 46-218 17-198 (208)
42 2y4t_A DNAJ homolog subfamily 99.9 2.3E-21 7.8E-26 172.0 18.2 180 46-232 39-233 (450)
43 2ond_A Cleavage stimulation fa 99.9 3E-21 1E-25 165.5 18.0 179 50-230 33-223 (308)
44 3ieg_A DNAJ homolog subfamily 99.9 5.4E-21 1.8E-25 163.2 19.3 178 46-230 133-326 (359)
45 3uq3_A Heat shock protein STI1 99.9 1.1E-21 3.9E-26 160.4 14.4 169 45-220 50-257 (258)
46 3qky_A Outer membrane assembly 99.9 3.4E-21 1.2E-25 160.6 17.4 174 46-226 28-248 (261)
47 4gco_A Protein STI-1; structur 99.9 6.7E-22 2.3E-26 149.2 11.3 122 58-186 4-125 (126)
48 3cv0_A Peroxisome targeting si 99.9 2.3E-21 7.9E-26 163.9 15.8 180 45-231 33-227 (327)
49 2y4t_A DNAJ homolog subfamily 99.9 6.2E-21 2.1E-25 169.2 19.0 179 46-231 156-350 (450)
50 3as5_A MAMA; tetratricopeptide 99.9 3.9E-21 1.3E-25 149.2 15.6 160 46-212 21-180 (186)
51 3mkr_A Coatomer subunit epsilo 99.9 1.1E-20 3.8E-25 161.8 19.0 172 46-229 78-253 (291)
52 3fp2_A TPR repeat-containing p 99.9 1.9E-20 6.5E-25 169.4 19.2 178 47-232 216-400 (537)
53 2vsy_A XCC0866; transferase, g 99.9 5.2E-21 1.8E-25 177.0 15.3 164 47-217 3-169 (568)
54 2xpi_A Anaphase-promoting comp 99.9 2.2E-20 7.5E-25 171.6 19.1 179 46-231 386-571 (597)
55 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.4E-20 8.2E-25 154.4 17.0 158 47-212 19-180 (275)
56 2gw1_A Mitochondrial precursor 99.8 1.2E-20 3.9E-25 169.4 15.2 181 47-230 251-469 (514)
57 3u4t_A TPR repeat-containing p 99.8 2.6E-20 8.9E-25 154.4 16.1 180 45-233 49-244 (272)
58 2ond_A Cleavage stimulation fa 99.8 4.3E-20 1.5E-24 158.4 17.8 175 49-230 80-261 (308)
59 3fp2_A TPR repeat-containing p 99.8 1.3E-20 4.5E-25 170.4 14.6 176 47-230 257-482 (537)
60 2ho1_A Type 4 fimbrial biogene 99.8 9.1E-20 3.1E-24 149.7 18.1 164 46-216 84-249 (252)
61 4g1t_A Interferon-induced prot 99.8 7.7E-20 2.6E-24 163.5 18.9 182 39-221 56-292 (472)
62 2xpi_A Anaphase-promoting comp 99.8 8.5E-20 2.9E-24 167.6 18.9 179 46-231 318-496 (597)
63 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.4E-19 4.7E-24 149.8 18.4 174 46-230 56-266 (275)
64 2vq2_A PILW, putative fimbrial 99.8 6E-20 2E-24 147.1 15.0 163 62-231 3-168 (225)
65 2gw1_A Mitochondrial precursor 99.8 3.8E-20 1.3E-24 166.1 14.9 161 63-231 233-393 (514)
66 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.7E-19 9.3E-24 146.7 18.6 159 46-211 17-219 (225)
67 3qky_A Outer membrane assembly 99.8 5.5E-20 1.9E-24 153.2 14.4 159 59-224 7-199 (261)
68 3gyz_A Chaperone protein IPGC; 99.8 1.3E-20 4.4E-25 147.1 9.2 121 48-175 17-137 (151)
69 3gyz_A Chaperone protein IPGC; 99.8 9.9E-21 3.4E-25 147.8 8.4 116 93-210 23-138 (151)
70 2r5s_A Uncharacterized protein 99.8 1.7E-20 6E-25 148.0 9.3 152 45-204 18-172 (176)
71 2pzi_A Probable serine/threoni 99.8 4.4E-20 1.5E-24 175.4 13.7 163 60-233 387-557 (681)
72 3urz_A Uncharacterized protein 99.8 1.6E-20 5.6E-25 152.5 9.0 160 65-232 2-179 (208)
73 4g1t_A Interferon-induced prot 99.8 1.6E-19 5.4E-24 161.5 16.1 180 47-230 152-354 (472)
74 1p5q_A FKBP52, FK506-binding p 99.8 1.1E-21 3.9E-26 171.2 2.0 174 47-229 79-283 (336)
75 3mkr_A Coatomer subunit epsilo 99.8 7.5E-19 2.6E-23 150.4 18.8 173 45-233 113-288 (291)
76 3as5_A MAMA; tetratricopeptide 99.8 2.2E-19 7.6E-24 139.2 13.9 159 66-231 7-165 (186)
77 3qou_A Protein YBBN; thioredox 99.8 2.3E-19 7.9E-24 153.0 14.3 164 63-233 113-278 (287)
78 2r5s_A Uncharacterized protein 99.8 1.4E-19 4.8E-24 142.8 11.2 164 63-233 2-167 (176)
79 2vgx_A Chaperone SYCD; alterna 99.8 2.4E-19 8.1E-24 138.6 12.0 117 95-213 10-126 (148)
80 2yhc_A BAMD, UPF0169 lipoprote 99.8 1.5E-18 5.1E-23 142.2 16.7 159 66-231 3-205 (225)
81 2vgx_A Chaperone SYCD; alterna 99.8 8.8E-20 3E-24 141.1 8.5 126 53-185 7-132 (148)
82 1p5q_A FKBP52, FK506-binding p 99.8 3.1E-20 1.1E-24 162.1 5.4 154 45-205 125-294 (336)
83 2xcb_A PCRH, regulatory protei 99.8 2.3E-19 7.9E-24 136.9 8.9 120 55-181 6-125 (142)
84 1qqe_A Vesicular transport pro 99.8 3.9E-19 1.3E-23 151.6 10.3 163 46-215 50-238 (292)
85 2xcb_A PCRH, regulatory protei 99.8 3.7E-19 1.3E-23 135.7 9.1 129 93-223 5-133 (142)
86 3qou_A Protein YBBN; thioredox 99.8 1.3E-18 4.4E-23 148.3 12.8 152 46-204 130-283 (287)
87 1kt0_A FKBP51, 51 kDa FK506-bi 99.8 1.4E-20 4.7E-25 171.0 -0.6 172 48-228 201-403 (457)
88 3edt_B KLC 2, kinesin light ch 99.8 3.9E-19 1.3E-23 146.7 7.7 179 47-232 22-274 (283)
89 2ooe_A Cleavage stimulation fa 99.8 1.7E-17 5.8E-22 152.0 18.6 179 50-230 255-445 (530)
90 3upv_A Heat shock protein STI1 99.8 5.4E-18 1.8E-22 125.9 12.5 115 106-222 4-124 (126)
91 2fo7_A Synthetic consensus TPR 99.8 2.6E-17 8.8E-22 120.6 14.8 135 68-209 2-136 (136)
92 1ouv_A Conserved hypothetical 99.8 7.8E-17 2.7E-21 134.6 18.7 159 47-222 56-230 (273)
93 3sz7_A HSC70 cochaperone (SGT) 99.7 1.1E-17 3.9E-22 130.0 12.3 113 106-220 11-123 (164)
94 3nf1_A KLC 1, kinesin light ch 99.7 2.5E-18 8.7E-23 144.1 9.0 180 46-232 40-300 (311)
95 3upv_A Heat shock protein STI1 99.7 1.4E-17 4.9E-22 123.6 11.7 119 64-189 1-125 (126)
96 2vsy_A XCC0866; transferase, g 99.7 1.6E-17 5.6E-22 153.5 14.0 142 88-231 5-149 (568)
97 2hr2_A Hypothetical protein; a 99.7 7.1E-18 2.4E-22 132.5 9.7 109 111-220 15-146 (159)
98 1qqe_A Vesicular transport pro 99.7 1.6E-17 5.5E-22 141.5 12.3 164 48-232 32-221 (292)
99 1ouv_A Conserved hypothetical 99.7 2.4E-16 8.4E-21 131.5 19.2 169 46-231 19-207 (273)
100 1hh8_A P67PHOX, NCF-2, neutrop 99.7 6.1E-17 2.1E-21 129.8 14.3 141 67-217 6-162 (213)
101 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 7E-19 2.4E-23 159.7 3.2 149 42-197 243-406 (457)
102 2e2e_A Formate-dependent nitri 99.7 3.1E-17 1.1E-21 128.5 12.1 125 47-178 24-151 (177)
103 3ulq_A Response regulator aspa 99.7 3.9E-17 1.3E-21 143.2 13.9 173 46-225 116-318 (383)
104 2fbn_A 70 kDa peptidylprolyl i 99.7 4.4E-18 1.5E-22 136.3 7.0 144 46-196 17-176 (198)
105 3sz7_A HSC70 cochaperone (SGT) 99.7 2.8E-17 9.6E-22 127.7 11.4 119 62-187 6-124 (164)
106 2lni_A Stress-induced-phosphop 99.7 7.9E-17 2.7E-21 118.8 12.9 120 103-224 13-132 (133)
107 4a1s_A PINS, partner of inscut 99.7 9.2E-18 3.2E-22 147.2 8.7 180 46-232 61-285 (411)
108 2ooe_A Cleavage stimulation fa 99.7 1.6E-16 5.5E-21 145.6 16.7 170 51-227 304-480 (530)
109 1a17_A Serine/threonine protei 99.7 1.6E-16 5.6E-21 121.7 14.1 133 66-205 12-146 (166)
110 2e2e_A Formate-dependent nitri 99.7 4.3E-17 1.5E-21 127.8 10.7 129 89-219 27-158 (177)
111 3sf4_A G-protein-signaling mod 99.7 1.3E-17 4.4E-22 144.9 8.5 180 46-232 22-249 (406)
112 2vyi_A SGTA protein; chaperone 99.7 1.3E-16 4.3E-21 116.8 12.5 120 104-225 10-129 (131)
113 2lni_A Stress-induced-phosphop 99.7 1.8E-16 6.1E-21 116.9 13.0 123 62-191 11-133 (133)
114 2vyi_A SGTA protein; chaperone 99.7 1.3E-16 4.3E-21 116.8 11.9 126 60-192 5-130 (131)
115 4f3v_A ESX-1 secretion system 99.7 8.1E-18 2.8E-22 143.8 5.5 177 46-230 19-228 (282)
116 2fbn_A 70 kDa peptidylprolyl i 99.7 1.7E-17 5.7E-22 132.9 7.0 160 64-230 1-176 (198)
117 3ro2_A PINS homolog, G-protein 99.7 2.6E-17 9E-22 138.3 8.5 179 46-231 18-244 (338)
118 2hr2_A Hypothetical protein; a 99.7 3.4E-17 1.2E-21 128.6 7.2 114 66-186 10-146 (159)
119 3rkv_A Putative peptidylprolyl 99.7 2.1E-16 7.3E-21 122.5 11.6 114 111-225 15-147 (162)
120 3edt_B KLC 2, kinesin light ch 99.7 1.2E-16 4E-21 131.7 10.6 153 46-205 56-281 (283)
121 3sf4_A G-protein-signaling mod 99.7 3.8E-17 1.3E-21 141.9 8.0 179 46-231 60-288 (406)
122 3q49_B STIP1 homology and U bo 99.7 4.8E-16 1.6E-20 116.0 12.9 118 101-220 4-126 (137)
123 1hxi_A PEX5, peroxisome target 99.7 1.7E-16 5.7E-21 118.4 10.3 99 111-210 21-119 (121)
124 1na0_A Designed protein CTPR3; 99.7 1.9E-15 6.6E-20 109.5 14.9 120 102-223 4-124 (125)
125 3nf1_A KLC 1, kinesin light ch 99.7 1.2E-16 3.9E-21 134.0 9.4 156 46-208 82-310 (311)
126 2kck_A TPR repeat; tetratricop 99.7 8.1E-16 2.8E-20 109.7 12.6 108 101-210 1-111 (112)
127 1hxi_A PEX5, peroxisome target 99.7 3E-16 1E-20 117.0 9.8 104 67-177 17-120 (121)
128 4a1s_A PINS, partner of inscut 99.7 4.7E-17 1.6E-21 142.6 6.2 179 46-231 99-324 (411)
129 2ifu_A Gamma-SNAP; membrane fu 99.7 2.9E-16 9.9E-21 134.6 10.9 161 46-215 49-233 (307)
130 4gcn_A Protein STI-1; structur 99.7 4.9E-16 1.7E-20 116.7 10.6 97 111-208 12-115 (127)
131 2dba_A Smooth muscle cell asso 99.7 2.7E-15 9.4E-20 112.6 14.8 120 100-221 22-144 (148)
132 1zu2_A Mitochondrial import re 99.7 5.5E-16 1.9E-20 121.5 11.1 88 87-175 17-124 (158)
133 3ro2_A PINS homolog, G-protein 99.7 1.1E-16 3.9E-21 134.4 7.7 179 46-231 56-284 (338)
134 1zu2_A Mitochondrial import re 99.7 3.2E-16 1.1E-20 122.8 9.6 102 44-146 13-130 (158)
135 1elw_A TPR1-domain of HOP; HOP 99.7 2.9E-15 9.9E-20 107.6 14.0 112 107-220 5-116 (118)
136 3q49_B STIP1 homology and U bo 99.7 4.9E-16 1.7E-20 116.0 10.1 122 61-189 3-129 (137)
137 1hh8_A P67PHOX, NCF-2, neutrop 99.7 2E-15 6.9E-20 120.9 14.4 129 46-184 19-163 (213)
138 1wao_1 Serine/threonine protei 99.7 1.9E-17 6.4E-22 151.3 2.6 145 64-215 3-160 (477)
139 2c2l_A CHIP, carboxy terminus 99.7 8.7E-17 3E-21 136.7 6.4 163 46-220 17-179 (281)
140 2fo7_A Synthetic consensus TPR 99.6 3E-15 1E-19 109.4 13.3 123 46-175 14-136 (136)
141 4gcn_A Protein STI-1; structur 99.6 5.7E-16 1.9E-20 116.3 9.3 104 64-174 5-115 (127)
142 2if4_A ATFKBP42; FKBP-like, al 99.6 6.3E-17 2.2E-21 141.3 4.6 152 53-211 165-334 (338)
143 1na0_A Designed protein CTPR3; 99.6 4.3E-15 1.5E-19 107.6 13.6 122 62-190 3-125 (125)
144 3q15_A PSP28, response regulat 99.6 3E-15 1E-19 131.2 14.7 155 46-207 114-292 (378)
145 1a17_A Serine/threonine protei 99.6 4.3E-15 1.5E-19 113.6 13.2 122 107-230 14-137 (166)
146 1elw_A TPR1-domain of HOP; HOP 99.6 5.2E-15 1.8E-19 106.2 12.4 115 66-187 3-117 (118)
147 3rjv_A Putative SEL1 repeat pr 99.6 2.6E-15 8.8E-20 122.2 12.0 153 46-207 31-199 (212)
148 3rkv_A Putative peptidylprolyl 99.6 7.2E-16 2.5E-20 119.5 8.1 118 66-190 10-146 (162)
149 2dba_A Smooth muscle cell asso 99.6 3.1E-15 1.1E-19 112.3 11.0 122 60-188 21-145 (148)
150 2xev_A YBGF; tetratricopeptide 99.6 2E-14 6.9E-19 106.0 15.2 113 111-224 6-124 (129)
151 3ulq_A Response regulator aspa 99.6 1.1E-15 3.9E-20 133.8 8.7 179 46-232 156-361 (383)
152 2c2l_A CHIP, carboxy terminus 99.6 7.8E-16 2.7E-20 130.7 7.2 151 45-207 50-201 (281)
153 2kck_A TPR repeat; tetratricop 99.6 3.2E-15 1.1E-19 106.6 9.3 108 62-176 1-111 (112)
154 3u3w_A Transcriptional activat 99.6 1.2E-14 4E-19 123.4 14.3 154 46-206 88-267 (293)
155 2qfc_A PLCR protein; TPR, HTH, 99.6 2.7E-14 9.4E-19 121.1 16.3 153 47-206 89-267 (293)
156 2ifu_A Gamma-SNAP; membrane fu 99.6 1.9E-15 6.6E-20 129.4 8.7 178 47-232 5-217 (307)
157 2qfc_A PLCR protein; TPR, HTH, 99.6 3.1E-14 1.1E-18 120.8 15.9 164 61-230 69-256 (293)
158 1elr_A TPR2A-domain of HOP; HO 99.6 9E-15 3.1E-19 106.9 10.7 117 106-225 4-127 (131)
159 3k9i_A BH0479 protein; putativ 99.6 3.2E-15 1.1E-19 110.0 7.8 104 120-224 3-109 (117)
160 2xev_A YBGF; tetratricopeptide 99.6 3.6E-14 1.2E-18 104.6 13.2 117 67-190 2-124 (129)
161 1wao_1 Serine/threonine protei 99.6 4E-15 1.4E-19 135.9 8.4 126 106-233 6-133 (477)
162 3rjv_A Putative SEL1 repeat pr 99.6 9.2E-14 3.2E-18 112.9 15.7 157 50-221 3-173 (212)
163 1elr_A TPR2A-domain of HOP; HO 99.5 2.4E-14 8.4E-19 104.6 9.2 119 64-190 1-126 (131)
164 1ihg_A Cyclophilin 40; ppiase 99.5 2.5E-14 8.5E-19 126.6 11.0 121 107-229 224-360 (370)
165 2if4_A ATFKBP42; FKBP-like, al 99.5 8.6E-15 2.9E-19 127.7 6.2 125 47-177 193-334 (338)
166 1ihg_A Cyclophilin 40; ppiase 99.5 4.3E-14 1.5E-18 125.0 10.0 124 67-197 223-362 (370)
167 3k9i_A BH0479 protein; putativ 99.5 2.1E-14 7.2E-19 105.5 6.6 95 90-186 8-105 (117)
168 4f3v_A ESX-1 secretion system 99.5 9.3E-15 3.2E-19 124.9 5.4 161 48-217 62-248 (282)
169 3gw4_A Uncharacterized protein 99.5 9.9E-14 3.4E-18 109.6 10.4 160 46-212 5-183 (203)
170 3u3w_A Transcriptional activat 99.5 2.2E-13 7.6E-18 115.4 11.4 157 69-231 77-258 (293)
171 3q15_A PSP28, response regulat 99.5 1.3E-13 4.6E-18 120.6 10.3 179 46-232 154-358 (378)
172 2xm6_A Protein corresponding t 99.5 2.6E-12 8.9E-17 116.4 18.3 172 47-230 237-423 (490)
173 2xm6_A Protein corresponding t 99.4 1.5E-12 5.3E-17 117.9 15.5 164 47-220 273-450 (490)
174 1hz4_A MALT regulatory protein 99.4 2.3E-12 7.9E-17 111.8 15.7 178 46-229 27-234 (373)
175 3e4b_A ALGK; tetratricopeptide 99.4 3.7E-12 1.3E-16 115.1 17.1 162 48-221 194-365 (452)
176 2kat_A Uncharacterized protein 99.4 6.2E-13 2.1E-17 96.9 9.4 82 125-207 3-84 (115)
177 3e4b_A ALGK; tetratricopeptide 99.4 4E-12 1.4E-16 114.9 15.1 159 48-222 160-330 (452)
178 3ro3_A PINS homolog, G-protein 99.4 1.2E-12 4.1E-17 98.3 9.4 135 67-208 9-161 (164)
179 2l6j_A TPR repeat-containing p 99.4 1.9E-13 6.6E-18 97.8 3.1 86 112-198 9-100 (111)
180 2kat_A Uncharacterized protein 99.4 4E-12 1.4E-16 92.5 10.2 81 91-173 4-84 (115)
181 2l6j_A TPR repeat-containing p 99.4 4.9E-12 1.7E-16 90.4 10.1 92 140-232 3-100 (111)
182 1hz4_A MALT regulatory protein 99.4 8.9E-12 3.1E-16 108.1 13.5 178 46-230 66-273 (373)
183 1na3_A Designed protein CTPR2; 99.3 1E-11 3.5E-16 85.6 10.8 82 140-222 8-89 (91)
184 2kc7_A BFR218_protein; tetratr 99.3 2.1E-12 7E-17 91.3 5.9 92 111-211 4-96 (99)
185 1na3_A Designed protein CTPR2; 99.3 1.1E-11 3.7E-16 85.5 9.1 83 106-190 9-91 (91)
186 3ma5_A Tetratricopeptide repea 99.3 3.4E-11 1.2E-15 86.1 9.9 71 137-208 3-73 (100)
187 3gw4_A Uncharacterized protein 99.2 2.1E-11 7.3E-16 96.0 8.5 140 88-230 8-167 (203)
188 3ma5_A Tetratricopeptide repea 99.2 3.6E-11 1.2E-15 86.0 8.5 70 102-173 3-72 (100)
189 2kc7_A BFR218_protein; tetratr 99.2 1.5E-11 5.1E-16 86.8 5.3 92 70-176 3-95 (99)
190 3mv2_B Coatomer subunit epsilo 99.2 8.1E-11 2.8E-15 101.7 10.8 168 51-227 84-272 (310)
191 4b4t_Q 26S proteasome regulato 99.2 4.9E-11 1.7E-15 105.0 9.7 160 46-211 17-210 (434)
192 3mv2_B Coatomer subunit epsilo 99.2 2.6E-10 8.9E-15 98.5 13.8 160 46-216 113-293 (310)
193 3ro3_A PINS homolog, G-protein 99.2 4.6E-11 1.6E-15 89.5 7.0 122 46-174 22-161 (164)
194 3ly7_A Transcriptional activat 99.1 1.1E-09 3.9E-14 96.4 15.5 150 57-211 184-345 (372)
195 1xi4_A Clathrin heavy chain; a 99.1 1.2E-09 4.2E-14 109.4 16.4 132 64-220 1102-1260(1630)
196 1klx_A Cysteine rich protein B 99.1 3.8E-09 1.3E-13 80.0 15.3 121 85-217 8-136 (138)
197 1b89_A Protein (clathrin heavy 99.1 2.8E-10 9.4E-15 102.7 9.4 130 68-221 123-252 (449)
198 1xi4_A Clathrin heavy chain; a 99.1 1.8E-09 6.1E-14 108.2 15.3 152 45-221 1117-1325(1630)
199 4e6h_A MRNA 3'-END-processing 99.1 5.8E-09 2E-13 99.1 18.1 170 50-226 326-520 (679)
200 1b89_A Protein (clathrin heavy 99.0 1.6E-10 5.4E-15 104.2 2.4 191 16-230 104-302 (449)
201 3ly7_A Transcriptional activat 98.9 8.8E-09 3E-13 90.7 12.6 127 47-177 213-345 (372)
202 1klx_A Cysteine rich protein B 98.9 2.2E-08 7.4E-13 75.8 12.3 120 47-183 9-136 (138)
203 4e6h_A MRNA 3'-END-processing 98.8 2.6E-08 8.8E-13 94.6 12.9 174 47-226 357-557 (679)
204 3u64_A Protein TP_0956; tetrat 98.8 5.9E-08 2E-12 82.7 13.3 159 49-209 48-273 (301)
205 4b4t_Q 26S proteasome regulato 98.8 2.2E-08 7.7E-13 87.9 9.5 158 67-231 4-196 (434)
206 3bee_A Putative YFRE protein; 98.8 3.6E-08 1.2E-12 70.1 8.5 77 63-142 2-78 (93)
207 1pc2_A Mitochondria fission pr 98.8 5.3E-08 1.8E-12 75.4 10.0 95 126-220 17-115 (152)
208 1pc2_A Mitochondria fission pr 98.8 9.1E-08 3.1E-12 74.1 11.2 99 86-186 12-115 (152)
209 3bee_A Putative YFRE protein; 98.7 1.2E-07 4E-12 67.4 9.0 72 137-208 2-75 (93)
210 2v5f_A Prolyl 4-hydroxylase su 98.6 2.2E-07 7.5E-12 66.8 9.1 81 142-223 6-93 (104)
211 3n71_A Histone lysine methyltr 98.5 2.4E-07 8.2E-12 84.8 7.5 127 46-179 322-472 (490)
212 3u64_A Protein TP_0956; tetrat 98.4 6.8E-07 2.3E-11 76.2 9.0 113 61-175 146-273 (301)
213 2v5f_A Prolyl 4-hydroxylase su 98.4 2.3E-06 7.7E-11 61.4 9.4 74 111-185 9-89 (104)
214 2uy1_A Cleavage stimulation fa 98.4 2.1E-05 7.2E-10 71.8 17.7 164 50-226 196-370 (493)
215 3n71_A Histone lysine methyltr 98.3 7.6E-07 2.6E-11 81.5 6.5 123 77-206 319-465 (490)
216 3qww_A SET and MYND domain-con 98.3 1.8E-06 6E-11 77.9 8.4 94 118-212 309-423 (433)
217 2uy1_A Cleavage stimulation fa 98.2 0.00012 4.2E-09 66.7 19.7 165 49-224 153-333 (493)
218 3qwp_A SET and MYND domain-con 98.1 8.2E-06 2.8E-10 73.3 7.8 97 117-214 297-414 (429)
219 3qww_A SET and MYND domain-con 98.0 3.5E-06 1.2E-10 75.9 4.9 84 46-135 311-410 (433)
220 1nzn_A CGI-135 protein, fissio 98.0 6.8E-05 2.3E-09 56.0 10.8 37 143-180 76-112 (126)
221 1nzn_A CGI-135 protein, fissio 98.0 5.4E-05 1.8E-09 56.5 10.2 104 49-155 17-122 (126)
222 3qwp_A SET and MYND domain-con 97.8 2.2E-05 7.4E-10 70.6 5.6 85 46-136 300-400 (429)
223 1y8m_A FIS1; mitochondria, unk 97.6 0.0029 9.9E-08 48.0 13.6 89 64-154 36-124 (144)
224 1y8m_A FIS1; mitochondria, unk 97.5 0.0014 4.9E-08 49.7 11.6 83 138-220 36-121 (144)
225 4h7y_A Dual specificity protei 97.5 0.0011 3.7E-08 51.0 10.4 113 100-215 7-133 (161)
226 3o48_A Mitochondria fission 1 97.5 0.00099 3.4E-08 50.0 9.9 87 66-155 39-126 (134)
227 4g26_A Pentatricopeptide repea 97.4 0.021 7.3E-07 51.9 19.7 163 45-209 38-210 (501)
228 3o48_A Mitochondria fission 1 97.3 0.00089 3E-08 50.2 7.8 76 142-217 41-119 (134)
229 4gns_B Protein CSD3, chitin bi 96.6 0.025 8.5E-07 54.1 12.7 116 48-168 264-397 (754)
230 4g26_A Pentatricopeptide repea 96.2 0.34 1.1E-05 43.9 17.6 153 70-229 29-194 (501)
231 4h7y_A Dual specificity protei 96.1 0.076 2.6E-06 40.7 10.7 120 60-181 6-133 (161)
232 4gns_B Protein CSD3, chitin bi 95.9 0.06 2.1E-06 51.5 11.3 112 88-202 265-397 (754)
233 1ya0_A SMG-7 transcript varian 95.1 0.11 3.6E-06 47.4 9.7 74 147-221 158-231 (497)
234 1ya0_A SMG-7 transcript varian 94.3 0.21 7.1E-06 45.5 9.5 75 113-188 158-232 (497)
235 3ffl_A Anaphase-promoting comp 93.6 0.16 5.6E-06 39.3 6.3 104 46-168 33-148 (167)
236 3ffl_A Anaphase-promoting comp 93.4 0.56 1.9E-05 36.3 9.1 25 177-201 123-147 (167)
237 2ff4_A Probable regulatory pro 92.7 0.51 1.7E-05 41.3 9.0 56 146-202 176-231 (388)
238 3kae_A CDC27, possible protein 91.3 3.7 0.00013 32.2 11.2 94 112-211 38-149 (242)
239 3kae_A CDC27, possible protein 90.8 4.4 0.00015 31.8 11.2 117 46-177 15-149 (242)
240 1zbp_A Hypothetical protein VP 89.1 3.1 0.00011 34.7 9.9 119 88-211 13-135 (273)
241 1zbp_A Hypothetical protein VP 88.0 2.4 8.3E-05 35.3 8.5 56 119-175 9-64 (273)
242 4fhn_B Nucleoporin NUP120; pro 87.2 5.6 0.00019 39.6 12.1 102 97-200 833-962 (1139)
243 2ff4_A Probable regulatory pro 86.5 2.9 0.0001 36.3 8.7 58 112-170 176-233 (388)
244 4b4t_S RPN3, 26S proteasome re 85.6 0.83 2.8E-05 41.7 4.7 138 87-228 151-329 (523)
245 3mkq_A Coatomer beta'-subunit; 82.2 15 0.00053 33.9 12.2 31 102-133 677-707 (814)
246 1qsa_A Protein (soluble lytic 79.9 38 0.0013 31.4 14.3 115 88-204 230-347 (618)
247 4fhn_B Nucleoporin NUP120; pro 78.4 14 0.00049 36.6 11.0 97 133-230 834-958 (1139)
248 3mkq_B Coatomer subunit alpha; 76.1 8.8 0.0003 29.8 7.0 75 115-203 13-87 (177)
249 3mkq_A Coatomer beta'-subunit; 74.2 13 0.00044 34.4 9.0 48 115-168 660-707 (814)
250 3txn_A 26S proteasome regulato 71.6 43 0.0015 29.2 11.1 155 47-204 33-209 (394)
251 4b4t_R RPN7, 26S proteasome re 70.6 25 0.00085 30.8 9.6 100 105-206 130-238 (429)
252 2w2u_A Hypothetical P60 katani 70.3 15 0.0005 24.7 6.2 30 123-152 42-71 (83)
253 3spa_A Mtrpol, DNA-directed RN 67.6 55 0.0019 32.6 11.8 91 115-206 135-231 (1134)
254 2v6y_A AAA family ATPase, P60 64.2 19 0.00065 24.0 5.8 20 123-142 34-53 (83)
255 2w2u_A Hypothetical P60 katani 62.8 14 0.00048 24.8 4.9 12 158-169 35-46 (83)
256 2v6y_A AAA family ATPase, P60 61.2 15 0.00053 24.5 4.9 19 151-170 21-39 (83)
257 3mkq_B Coatomer subunit alpha; 58.6 60 0.0021 24.9 9.9 102 42-168 14-115 (177)
258 4gq2_M Nucleoporin NUP120; bet 57.3 43 0.0015 32.6 9.1 80 131-211 830-933 (950)
259 1wfd_A Hypothetical protein 15 51.6 53 0.0018 22.2 6.6 33 123-155 38-70 (93)
260 1wfd_A Hypothetical protein 15 50.4 30 0.001 23.6 5.0 19 151-170 25-43 (93)
261 3txn_A 26S proteasome regulato 50.1 61 0.0021 28.2 8.1 23 182-204 105-127 (394)
262 4gq2_M Nucleoporin NUP120; bet 49.7 1.1E+02 0.0037 29.8 10.6 81 95-177 829-933 (950)
263 4b4t_R RPN7, 26S proteasome re 46.5 92 0.0031 27.0 8.8 118 49-172 113-238 (429)
264 2cpt_A SKD1 protein, vacuolar 43.4 36 0.0012 24.3 4.7 19 151-170 28-46 (117)
265 2v6x_A Vacuolar protein sortin 43.3 54 0.0019 21.6 5.4 11 89-99 11-21 (85)
266 4b4t_S RPN3, 26S proteasome re 43.1 47 0.0016 30.2 6.4 77 67-150 231-313 (523)
267 2crb_A Nuclear receptor bindin 43.1 19 0.00065 24.8 2.9 23 112-134 20-42 (97)
268 3ax2_A Mitochondrial import re 42.5 46 0.0016 21.7 4.7 34 112-145 22-55 (73)
269 3t5x_A PCI domain-containing p 42.2 45 0.0015 26.0 5.5 36 67-107 14-49 (203)
270 1qsa_A Protein (soluble lytic 41.3 2.2E+02 0.0074 26.3 12.4 116 47-170 228-347 (618)
271 3spa_A Mtrpol, DNA-directed RN 38.0 1.8E+02 0.0063 29.0 10.0 95 70-171 130-230 (1134)
272 2crb_A Nuclear receptor bindin 37.8 48 0.0017 22.8 4.3 21 147-168 21-41 (97)
273 2cpt_A SKD1 protein, vacuolar 34.8 1.2E+02 0.0041 21.5 7.4 20 123-142 41-60 (117)
274 2cfu_A SDSA1; SDS-hydrolase, l 34.8 53 0.0018 30.6 5.5 42 115-156 457-498 (658)
275 3ph0_C ASCG; type III secretio 34.0 39 0.0013 21.0 3.0 34 94-127 27-60 (61)
276 1wy6_A Hypothetical protein ST 28.0 1.9E+02 0.0066 21.7 6.7 45 164-208 113-157 (172)
277 2cfu_A SDSA1; SDS-hydrolase, l 26.7 83 0.0029 29.2 5.4 50 178-227 451-500 (658)
278 3t5x_A PCI domain-containing p 23.5 1.2E+02 0.0042 23.4 5.1 31 144-175 17-47 (203)
279 4a1g_A Mitotic checkpoint seri 21.7 2.5E+02 0.0086 20.8 6.9 22 185-206 110-131 (152)
280 2wvi_A Mitotic checkpoint seri 20.8 2.7E+02 0.0093 20.9 6.8 48 159-206 77-126 (164)
281 4a5x_A MITD1, MIT domain-conta 20.4 1.9E+02 0.0066 19.1 6.8 15 120-134 29-43 (86)
282 1om2_A Protein (mitochondrial 20.2 76 0.0026 21.8 2.8 34 112-145 25-58 (95)
No 1
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=5.2e-40 Score=285.44 Aligned_cols=208 Identities=19% Similarity=0.370 Sum_probs=189.7
Q ss_pred chhhhhccCCCCCCCCCCchhHhhhhhhhh--------------cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCC
Q psy4772 18 NREEWKDLRPIPQDDGPTPVVAIAYSQKCN--------------LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQF 83 (235)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~--------------~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~ 83 (235)
++++|+||+|+||++|++|+++|+|+..+. .-++|+..++++|.++|+++.+|+.||.++..+|.
T Consensus 4 ~~~~~~dv~p~~~~~~~~~~~~i~y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~- 82 (306)
T 3dra_A 4 SKYDYSDITPVDINTEEPQICQILYDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPN- 82 (306)
T ss_dssp CSSCCTTCCCCCCCCSSCCTTCCCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT-
T ss_pred CCCCCCCCeecCCCCCCCCceeeeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc-
Confidence 345799999999999999999999986542 12799999999999999999999999999999982
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHH----hcc---cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH
Q psy4772 84 TPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVV----NAG---EKSERALALTADAITMNPANYTVWQYRREILKALNK 156 (235)
Q Consensus 84 ~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il----~~~---~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~ 156 (235)
..+++|+..+.++|.++|+++++|+ .||.++ ..+ +++++++.+++++|+++|+++.+|+||++++..++.
T Consensus 83 --~~~~eeL~~~~~~L~~nPk~y~aW~-~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~ 159 (306)
T 3dra_A 83 --RNLYDELDWCEEIALDNEKNYQIWN-YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDL 159 (306)
T ss_dssp --SCHHHHHHHHHHHHHHCTTCCHHHH-HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred --ccHHHHHHHHHHHHHHCcccHHHHH-HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 1346899999999999999999996 577999 666 789999999999999999999999999999999994
Q ss_pred hHH--HHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC------chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccc
Q psy4772 157 DLH--QELKYIGEKIKENSKNYQVWRHRQIIVEWMGE------PDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDR 228 (235)
Q Consensus 157 ~~e--eal~~~~~al~~~P~n~~aw~~r~~~l~~l~~------~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~ 228 (235)
++ +++++++++|++||+|++||++|++++..+++ +++|+++++++|.++|+|.++|+|+++++..+|+..+
T Consensus 160 -~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~ 238 (306)
T 3dra_A 160 -HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSIT 238 (306)
T ss_dssp -TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGG
T ss_pred -cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChH
Confidence 78 99999999999999999999999999999998 8999999999999999999999999999999998655
Q ss_pred cc
Q psy4772 229 GV 230 (235)
Q Consensus 229 ~~ 230 (235)
+.
T Consensus 239 ~~ 240 (306)
T 3dra_A 239 QL 240 (306)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 2
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=100.00 E-value=1.9e-38 Score=279.37 Aligned_cols=211 Identities=19% Similarity=0.368 Sum_probs=194.5
Q ss_pred ccccccccchhhhhccCCCCCCCCCCchhHhhhhhhhh--------------cHHHHHHHHHhHHhcCCCchhHhhhHHH
Q psy4772 10 NEIWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCN--------------LFSDELSYIEGLISHDVRNNSAWTQRYF 75 (235)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~--------------~~~~Al~~~~~aL~~~P~~~~a~~~~g~ 75 (235)
.+.|+-|..|++|+||+|+||++|++|+++|+|++.+. ..++|+.+++++|.++|+++.+|+.||.
T Consensus 17 ~~~~~~~~~~~~w~dv~p~~~~~~~~~~~~i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~ 96 (349)
T 3q7a_A 17 TSTYIPMSQRRSWADVKPIMQDDGPNPVVPIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFS 96 (349)
T ss_dssp --CCCCTTSCGGGTTCCCCCCCCCSSCSSCBCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCCccCcccCcccCCCcccCCCCCCCCeeeeeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 35688899999999999999999999999999997642 2379999999999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc-c-ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q psy4772 76 VINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG-E-KSERALALTADAITMNPANYTVWQYRREILKA 153 (235)
Q Consensus 76 ~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~-~-~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~ 153 (235)
++..+|+ .+++|+.++.++|.++|+++++|+ .|+.++..+ + .+++++.+++++|+++|+++.||++|++++..
T Consensus 97 iL~~l~~----~l~eEL~~~~~~L~~nPKny~aW~-hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~ 171 (349)
T 3q7a_A 97 LLTSLNK----SLEDELRLMNEFAVQNLKSYQVWH-HRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH 171 (349)
T ss_dssp HHHHTTC----CHHHHHHHHHHHHHTTCCCHHHHH-HHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhhh----hHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999885 245899999999999999999996 578999987 7 89999999999999999999999999999999
Q ss_pred hhHhHH--------HHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC-------chHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 154 LNKDLH--------QELKYIGEKIKENSKNYQVWRHRQIIVEWMGE-------PDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 154 l~~~~e--------eal~~~~~al~~~P~n~~aw~~r~~~l~~l~~-------~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
+++ ++ +++++++++|+++|+|++||++|++++.++++ +++|+++++++|.++|+|.++|+|+++
T Consensus 172 l~~-~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~ 250 (349)
T 3q7a_A 172 FST-LGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRG 250 (349)
T ss_dssp HHH-TTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hcc-ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 995 67 99999999999999999999999999999987 689999999999999999999999999
Q ss_pred HHhhcCCc
Q psy4772 219 VINLLDDD 226 (235)
Q Consensus 219 ~l~~l~~~ 226 (235)
++...|+.
T Consensus 251 Ll~~~~~~ 258 (349)
T 3q7a_A 251 FLKHFSLP 258 (349)
T ss_dssp HHHHTTCC
T ss_pred HHHhcCCC
Confidence 99877765
No 3
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=100.00 E-value=1.2e-36 Score=271.66 Aligned_cols=218 Identities=27% Similarity=0.502 Sum_probs=198.2
Q ss_pred CCCCCCcccccccccccchhhhhccCCCCCCCCCCchhHhhhhhh--------------hhcHHHHHHHHHhHHhcCCCc
Q psy4772 1 MTDSSSDEDNEIWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQK--------------CNLFSDELSYIEGLISHDVRN 66 (235)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~--------------~~~~~~Al~~~~~aL~~~P~~ 66 (235)
|.+++.+++.+.|+.|..++.|+|++|++++.+.++++.+.+.+. .|++++|+..|+++|+++|++
T Consensus 51 ~~~~~~~~~~~~~~~y~~~~~w~di~~~~~~~~~~~~~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~ 130 (382)
T 2h6f_A 51 MDDGFVSLDSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN 130 (382)
T ss_dssp ----CCCTTSTTCCCGGGCGGGTTSCCCCCCCCSSCSSEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC
T ss_pred CCccccccCCccccccccCcccccCCCCCCCCCcCcchhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC
Confidence 556666668889999999999999999999999888776666643 256899999999999999999
Q ss_pred hhHhhhHHHHHhhcCC-CCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 67 NSAWTQRYFVINHTTQ-FTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~-~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
+.+|++||.++..+|+ ++ +|+..|+++|+++|+++.+| +.+|.++..+|++++|+.+|+++|+++|+++.+|+
T Consensus 131 ~~a~~~~g~~l~~~g~d~~-----eAl~~~~~al~l~P~~~~a~-~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~ 204 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLH-----EEMNYITAIIEEQPKNYQVW-HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 204 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcccCHH-----HHHHHHHHHHHHCCCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHH
Confidence 9999999999999996 64 79999999999999999999 68999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH-cCCchHH-----HHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW-MGEPDEE-----LALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~-l~~~~~A-----l~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
+||.++..+|+ +++|+.+++++|+++|+++.+|+++|.++.. .|..++| +.+|++||.++|++.++|+++|.+
T Consensus 205 ~lg~~~~~~g~-~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~l 283 (382)
T 2h6f_A 205 HRQWVIQEFKL-WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGI 283 (382)
T ss_dssp HHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999999994 9999999999999999999999999999999 5555888 599999999999999999999999
Q ss_pred HhhcCC
Q psy4772 220 INLLDD 225 (235)
Q Consensus 220 l~~l~~ 225 (235)
+...|.
T Consensus 284 l~~~g~ 289 (382)
T 2h6f_A 284 LQDRGL 289 (382)
T ss_dssp HTTTCG
T ss_pred HHccCc
Confidence 988774
No 4
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.97 E-value=2.9e-30 Score=226.01 Aligned_cols=175 Identities=19% Similarity=0.370 Sum_probs=159.1
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC-----HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc--
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT-----PEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK-- 122 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~-----e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~-- 122 (235)
++|+.+++++|.++|+++.+|+.|+.++..+++.. ...+++++.++.++|..+|+++.+|+ .||+++..++.
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~-hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH-HRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHhccCccc
Confidence 68999999999999999999999999999877521 12367999999999999999999995 58899999985
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc-------------
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM------------- 189 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l------------- 189 (235)
+++++.+++++|+++|+|+.||+||++++..++..+++++.+++++|+.+|.|++||++|+.++..+
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~ 205 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 205 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccc
Confidence 8999999999999999999999999999999994369999999999999999999999999999888
Q ss_pred -CCchHHHHHHHHHHHhCCCChHHhHHHHHHH-hhcCC
Q psy4772 190 -GEPDEELALTAAILAQDAKNYHAWQHRQWVI-NLLDD 225 (235)
Q Consensus 190 -~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l-~~l~~ 225 (235)
+.+++|+++++++|.++|+|.++|+|+++++ ..+|.
T Consensus 206 ~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 206 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCG
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCc
Confidence 4578999999999999999999999888888 45553
No 5
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.97 E-value=6.8e-30 Score=238.62 Aligned_cols=176 Identities=19% Similarity=0.380 Sum_probs=162.9
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCC-----HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc--c
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFT-----PEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE--K 122 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~-----e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~--~ 122 (235)
++|+..++++|..+|+++.+|++||.++..+|+.. ...+++|+++++++|+++|+++.+|+ .||+++..++ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~-hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH-HRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHccccc
Confidence 78999999999999999999999999999988631 12367999999999999999999995 6889999999 5
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc-------------
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM------------- 189 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l------------- 189 (235)
+++|+++++++|+++|+++.||++|++++..++..+++|+++++++|+.+|.|++||++|+.++..+
T Consensus 125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 204 (567)
T 1dce_A 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccccc
Confidence 6999999999999999999999999999999994489999999999999999999999999999886
Q ss_pred -CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCc
Q psy4772 190 -GEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 190 -~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~ 226 (235)
+.+++|++++++||.++|+|.++|+|+++++..+++.
T Consensus 205 ~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 205 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence 4578999999999999999999999999999888774
No 6
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=1.9e-28 Score=200.96 Aligned_cols=182 Identities=14% Similarity=0.089 Sum_probs=165.1
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc----
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG---- 120 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~---- 120 (235)
..|++++|+..|+++|+++|+++.+|+.+|.++..+|+++ +|+..|.++++++|+++.+| +.+|.++...
T Consensus 17 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~-----~A~~~~~~al~~~P~~~~a~-~~lg~~~~~~~~~~ 90 (217)
T 2pl2_A 17 ALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVN-----PALENGKTLVARTPRYLGGY-MVLSEAYVALYRQA 90 (217)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCcHHHH-HHHHHHHHHhhhhh
Confidence 3588999999999999999999999999999999999875 79999999999999999999 6899999999
Q ss_pred -------cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCch
Q psy4772 121 -------EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPD 193 (235)
Q Consensus 121 -------~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~ 193 (235)
|++++|+..++++++++|+++.+|..+|.++..+| ++++|+.+++++++++ .++.+|+++|.++..+|+++
T Consensus 91 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~ 168 (217)
T 2pl2_A 91 EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG-ERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLD 168 (217)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHH
T ss_pred hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999 4999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccccc
Q psy4772 194 EELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEYE 234 (235)
Q Consensus 194 ~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~~ 234 (235)
+|+..+++++.++|++..++.+++.++..+|+.++|+-.|.
T Consensus 169 ~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999999999999999999999988876654
No 7
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=4.7e-29 Score=222.57 Aligned_cols=166 Identities=27% Similarity=0.475 Sum_probs=156.9
Q ss_pred hHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc-cHHHHHHHHHHHHc
Q psy4772 58 GLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK-SERALALTADAITM 136 (235)
Q Consensus 58 ~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~-~~eAl~~~~~al~l 136 (235)
.+|+++|+++.+|.++|.++...|+++ +|+..|.++|+++|+++.+| +.+|.++..+|+ +++|+.+|+++|++
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~-----~Al~~~~~al~l~P~~~~a~-~~~g~~l~~~g~d~~eAl~~~~~al~l 161 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSE-----RAFKLTRDAIELNAANYTVW-HFRRVLLKSLQKDLHEEMNYITAIIEE 161 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChH-----HHHHHHHHHHHhCccCHHHH-HHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 478899999999999999999999885 79999999999999999999 589999999997 99999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 137 NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216 (235)
Q Consensus 137 ~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r 216 (235)
+|+++.+|++||.++..+| ++++|+.+|+++|+++|+|+.+|+++|+++..+|++++|+.+++++|+++|++.++|+++
T Consensus 162 ~P~~~~a~~~~g~~~~~~g-~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~l 240 (382)
T 2h6f_A 162 QPKNYQVWHHRRVLVEWLR-DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR 240 (382)
T ss_dssp CTTCHHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999 599999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-cCCccccc
Q psy4772 217 QWVINL-LDDDDRGV 230 (235)
Q Consensus 217 ~~~l~~-l~~~~~~~ 230 (235)
|.++.. .|...++.
T Consensus 241 g~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 241 YFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHHHHTTCSCSHHH
T ss_pred HHHHHHhcCcchHHH
Confidence 999977 45435553
No 8
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.96 E-value=1.7e-28 Score=212.93 Aligned_cols=154 Identities=19% Similarity=0.360 Sum_probs=139.9
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc--ccHH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE--KSER 125 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~--~~~e 125 (235)
.|.++..++...++ .|++++ +|+..+.++|.+||+++++|+ .||.++..+| .+++
T Consensus 31 ~y~~~~~~~~a~~~------------------~~e~s~----~aL~~t~~~L~~nP~~~taWn-~R~~~L~~l~~~~~~e 87 (306)
T 3dra_A 31 DYKQIMGLLLALMK------------------AEEYSE----RALHITELGINELASHYTIWI-YRFNILKNLPNRNLYD 87 (306)
T ss_dssp HHHHHHHHHHHHHH------------------TTCCSH----HHHHHHHHHHHHCTTCHHHHH-HHHHHHHTCTTSCHHH
T ss_pred HHHHHHHHHHHHHH------------------cCCCCH----HHHHHHHHHHHHCcHHHHHHH-HHHHHHHHcccccHHH
Confidence 56666666555444 466664 799999999999999999996 6889999999 9999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHH----HHh---hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCch--HHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREIL----KAL---NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPD--EEL 196 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l----~~l---~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~--~Al 196 (235)
+|.+++++|.++|+++++|++|++++ ..+ + .+++|+.+++++++++|+|+++|+||++++..+|+++ +++
T Consensus 88 eL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~-~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL 166 (306)
T 3dra_A 88 ELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF-DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKEL 166 (306)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC-CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHH
Confidence 99999999999999999999999999 666 4 5899999999999999999999999999999999998 999
Q ss_pred HHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 197 ALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 197 ~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
++++++|++||+|.+||+||++++..+|+
T Consensus 167 ~~~~~~i~~d~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 167 SFVDKVIDTDLKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999999999999988876
No 9
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.95 E-value=5.3e-28 Score=212.81 Aligned_cols=155 Identities=19% Similarity=0.330 Sum_probs=136.6
Q ss_pred CchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc-ccHHHHHHHHHHHHcCCCChHH
Q psy4772 65 RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE-KSERALALTADAITMNPANYTV 143 (235)
Q Consensus 65 ~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~-~~~eAl~~~~~al~l~P~~~~a 143 (235)
+...++..++.++... +++ ++|++.+.++|.+||+++++|+ .||.++..+| .++++|.+++++|.++|+++++
T Consensus 52 ~y~~~~~~~r~~~~~~-e~s----e~AL~lt~~~L~~nP~~ytaWn-~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a 125 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKE-EKS----ERALELTEIIVRMNPAHYTVWQ-YRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV 125 (349)
T ss_dssp HHHHHHHHHHHHHHTT-CCS----HHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHhCchhHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH
Confidence 3334444444443333 344 3799999999999999999996 5789999999 5999999999999999999999
Q ss_pred HHHHHHHHHHh-hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCch--------HHHHHHHHHHHhCCCChHHhH
Q psy4772 144 WQYRREILKAL-NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPD--------EELALTAAILAQDAKNYHAWQ 214 (235)
Q Consensus 144 w~~r~~~l~~l-~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~--------~Al~~~~~ai~ldp~n~~aw~ 214 (235)
|++|++++..+ +..+++|+.+++++|+++|+|+++|++|++++.++|+++ +|+++++++|++||+|.+||+
T Consensus 126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~ 205 (349)
T 3q7a_A 126 WHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWG 205 (349)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999 523799999999999999999999999999999999988 999999999999999999999
Q ss_pred HHHHHHhhcCC
Q psy4772 215 HRQWVINLLDD 225 (235)
Q Consensus 215 ~r~~~l~~l~~ 225 (235)
||++++..+++
T Consensus 206 ~R~~lL~~l~~ 216 (349)
T 3q7a_A 206 WRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHTTSTT
T ss_pred HHHHHHHhccc
Confidence 99999988886
No 10
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.94 E-value=4.5e-26 Score=180.11 Aligned_cols=160 Identities=11% Similarity=0.114 Sum_probs=153.9
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+..|+++|+++|+++.+|..+|.++..+|+++ +|+..+.+++..+|+++.+| ..+|.++...++++
T Consensus 17 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-----~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (184)
T 3vtx_A 17 TKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPN-----DAIESLKKFVVLDTTSAEAY-YILGSANFMIDEKQ 90 (184)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCCCCHHHH-HHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhcCchhHHHH-HHHHHHHHHcCCHH
Confidence 3589999999999999999999999999999999999874 79999999999999999999 58999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+|+..+.+++.++|.+..+|..+|.++..+| ++++|+.+++++++++|.++.+|+++|.++..+|++++|+.+|++||+
T Consensus 91 ~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 91 AAIDALQRAIALNTVYADAYYKLGLVYDSMG-EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHhC-CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 599999999999999999999999999999999999999999999999
Q ss_pred hCCCChH
Q psy4772 205 QDAKNYH 211 (235)
Q Consensus 205 ldp~n~~ 211 (235)
++|+++.
T Consensus 170 ~~p~~a~ 176 (184)
T 3vtx_A 170 KEEKKAK 176 (184)
T ss_dssp TTHHHHH
T ss_pred CCccCHH
Confidence 9998754
No 11
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.94 E-value=1.6e-25 Score=195.90 Aligned_cols=165 Identities=21% Similarity=0.392 Sum_probs=151.8
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc-cHHHH
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK-SERAL 127 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~-~~eAl 127 (235)
+++++.+++.+|..+|+++.+|++|++++..+++. .++++++++.++|.++|++++||+ .+|.++...|. +++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~---~~~~EL~~~~k~l~~dprNy~AW~-~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP---NWARELELCARFLEADERNFHCWD-YRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC---CHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc---cHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHhCcCHHHHH
Confidence 78999999999999999999999999999998852 246899999999999999999996 58899999998 59999
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHh--------------hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc----
Q psy4772 128 ALTADAITMNPANYTVWQYRREILKAL--------------NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM---- 189 (235)
Q Consensus 128 ~~~~~al~l~P~~~~aw~~r~~~l~~l--------------~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l---- 189 (235)
++++++|+.+|.++.||++|+.++..+ + .+++|+++++++|..+|.|.++|+++.+++.+.
T Consensus 166 ~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~-~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 166 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN-VLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHH-HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 999999999999999999999999998 5 489999999999999999999999888888665
Q ss_pred -------CCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 190 -------GEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 190 -------~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+.+++++++++.+++++|++ .|+.++.++
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~ 280 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN--KWCLLTIIL 280 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHH
Confidence 34789999999999999998 798888876
No 12
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.93 E-value=1.3e-25 Score=209.80 Aligned_cols=145 Identities=21% Similarity=0.460 Sum_probs=134.2
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc----------cHHHHHHHHHHHHcCCCChHHHHH
Q psy4772 77 INHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK----------SERALALTADAITMNPANYTVWQY 146 (235)
Q Consensus 77 l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~----------~~eAl~~~~~al~l~P~~~~aw~~ 146 (235)
+...|++++ +|++.+.++|.++|+++++|+ .||.++..+|+ +++|+++++++|+++|+++.||+|
T Consensus 38 ~~~~~~~~e----eal~~~~~~l~~nP~~~taW~-~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~h 112 (567)
T 1dce_A 38 KRQAGELDE----SVLELTSQILGANPDFATLWN-CRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH 112 (567)
T ss_dssp HHHTTCCSH----HHHHHHHHHHHHCTTCHHHHH-HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCCCH----HHHHHHHHHHHHCchhHHHHH-HHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 445677874 799999999999999999996 68899999988 999999999999999999999999
Q ss_pred HHHHHHHhhH-hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC-CchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 147 RREILKALNK-DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG-EPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 147 r~~~l~~l~~-~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~-~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
|++++.++++ .+++|+.+++++|+++|+|++||++|++++..+| .+++|+++++++|+.+|+|.+||+||+.++..++
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhc
Confidence 9999999982 2799999999999999999999999999999999 8999999999999999999999999999997764
Q ss_pred Cc
Q psy4772 225 DD 226 (235)
Q Consensus 225 ~~ 226 (235)
+.
T Consensus 193 ~~ 194 (567)
T 1dce_A 193 PQ 194 (567)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 13
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.93 E-value=3.3e-25 Score=212.09 Aligned_cols=157 Identities=11% Similarity=0.079 Sum_probs=105.7
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+.+|++||+++|+++.+|+++|.++..+|+++ +|++.|+++|+++|+++.+| +++|.++..+|++++
T Consensus 22 ~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~-----eA~~~~~~Al~l~P~~~~a~-~nLg~~l~~~g~~~~ 95 (723)
T 4gyw_A 22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ-----EALMHYKEAIRISPTFADAY-SNMGNTLKEMQDVQG 95 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHH
Confidence 356666666666666666666666666666666666653 56666666666666666666 456666666666666
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+++|+++|+++|++..+|+++|.++..+|+ +++|+.+|+++++++|++..+|.++|.++..+|++++|.+.+++++++
T Consensus 96 A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 96 ALQCYTRAIQINPAFADAHSNLASIHKDSGN-IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 6666666666666666666666666666663 666666666666666666666666666666666666666666666666
Q ss_pred CCCC
Q psy4772 206 DAKN 209 (235)
Q Consensus 206 dp~n 209 (235)
.|+.
T Consensus 175 ~~~~ 178 (723)
T 4gyw_A 175 VADQ 178 (723)
T ss_dssp HHHH
T ss_pred ChhH
Confidence 6554
No 14
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=1.3e-24 Score=178.04 Aligned_cols=162 Identities=13% Similarity=0.101 Sum_probs=153.8
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHH
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTV 143 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~a 143 (235)
|.++.+|+.+|.++...|+++ +|+..|.++++++|+++.+| +.+|.++...|++++|+..++++++++|+++.+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~p~~~~a~-~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a 75 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYD-----AALTLFERALKENPQDPEAL-YWLARTQLKLGLVNPALENGKTLVARTPRYLGG 75 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHH-----HHHHHHHHHHTTSSSCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 889999999999999999875 79999999999999999999 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----------hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHH
Q psy4772 144 WQYRREILKAL-----------NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 144 w~~r~~~l~~l-----------~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~a 212 (235)
|+.+|.++..+ |+ +++|+..++++++++|+++.+|+.+|.++..+|++++|+..++++++++ .++.+
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 153 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGY-LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEI 153 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHH
T ss_pred HHHHHHHHHHhhhhhhhhcccccC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHH
Confidence 99999999999 95 9999999999999999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHhhcCCcccccccc
Q psy4772 213 WQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 213 w~~r~~~l~~l~~~~~~~~~~ 233 (235)
|.++|.++..+|+.++++-.|
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998876544
No 15
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=3.2e-24 Score=169.38 Aligned_cols=163 Identities=10% Similarity=0.075 Sum_probs=154.5
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHH
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTV 143 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~a 143 (235)
++++++|+++|.++..+|+++ +|+..|+++|+++|+++.+| +.+|.++...|++++|+..+.+++..+|++..+
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 75 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFD-----GAIRAYKKVLKADPNNVETL-LKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA 75 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH
Confidence 467899999999999999875 79999999999999999999 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 144 WQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
+..+|.++...+ +++.++..++++++++|.+..+|..+|.++..+|++++|++.|+++++++|.++.+|+++|.++..+
T Consensus 76 ~~~~~~~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 76 YYILGSANFMID-EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence 999999999999 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccc
Q psy4772 224 DDDDRGVLEY 233 (235)
Q Consensus 224 ~~~~~~~~~~ 233 (235)
|+..+|.-.|
T Consensus 155 g~~~~A~~~~ 164 (184)
T 3vtx_A 155 GLRDEAVKYF 164 (184)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9988876544
No 16
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.92 E-value=1.8e-24 Score=176.66 Aligned_cols=171 Identities=8% Similarity=0.074 Sum_probs=161.6
Q ss_pred hhcHHHHHHHHHhHHhcCC-CchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 46 CNLFSDELSYIEGLISHDV-RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P-~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
.|++++|+..|+++|+++| .+..+++++|.++..+|+++ +|+..|.+++.++|+++.+| +.+|.++..+|+++
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~~~~~ 93 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYK-----EAADYFDIAIKKNYNLANAY-IGKSAAYRDMKNNQ 93 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHTTCSHHHHH-HHHHHHHHHTTCHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHH-----HHHHHHHHHHHhCcchHHHH-HHHHHHHHHcccHH
Confidence 5899999999999999999 99999999999999999875 79999999999999999999 68999999999999
Q ss_pred HHHHHHHHHHHcCCCCh-------HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC--ChHHhHHHHHHHHHcCCc---
Q psy4772 125 RALALTADAITMNPANY-------TVWQYRREILKALNKDLHQELKYIGEKIKENSK--NYQVWRHRQIIVEWMGEP--- 192 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~-------~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~--n~~aw~~r~~~l~~l~~~--- 192 (235)
+|+..++++++++|++. .+|..+|.++..+| ++++|+.+++++++++|+ +..+|+++|.++...|+.
T Consensus 94 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~ 172 (228)
T 4i17_A 94 EYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAG-NIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLR 172 (228)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhc-cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 67999999999999 599999999999999999 999999999999998887
Q ss_pred ------------------------hHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 193 ------------------------DEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 193 ------------------------~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
++|+.+++++++++|++..+...++.+...+
T Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 173 KATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI 227 (228)
T ss_dssp HHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999998888876544
No 17
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.92 E-value=1.7e-24 Score=207.16 Aligned_cols=163 Identities=13% Similarity=0.100 Sum_probs=155.8
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
-.|+++++|+++|.++..+|+++ +|+..|+++|+++|+++.+| +++|.++..+|++++|+.+|+++|+++|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~-----eAi~~~~kAl~l~P~~~~a~-~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~ 77 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIE-----EAVRLYRKALEVFPEFAAAH-SNLASVLQQQGKLQEALMHYKEAIRISPTFA 77 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCSCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 47999999999999999999875 79999999999999999999 6899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
.+|+++|.++..+| ++++|+.+|+++++++|++..+|+++|.++..+|++++|+.+|++|++++|++..+|.++|.++.
T Consensus 78 ~a~~nLg~~l~~~g-~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQ-DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 99999999999999 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccc
Q psy4772 222 LLDDDDRGVL 231 (235)
Q Consensus 222 ~l~~~~~~~~ 231 (235)
.+|+..+++-
T Consensus 157 ~~g~~~~A~~ 166 (723)
T 4gyw_A 157 IVCDWTDYDE 166 (723)
T ss_dssp HTTCCTTHHH
T ss_pred hcccHHHHHH
Confidence 9999877654
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.92 E-value=1.9e-23 Score=181.25 Aligned_cols=181 Identities=10% Similarity=0.082 Sum_probs=153.4
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+.+|+++++.+|+++.+|+.+|.++..+|+++ +|+..|.+++.++|++..+| +.+|.++...|+++
T Consensus 77 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 77 KEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQ-----AAIVALQRCLELQPNNLKAL-MALAVSYTNTSHQQ 150 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHH
T ss_pred HCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhcCCCCHHHH-HHHHHHHHccccHH
Confidence 3578999999999999999999999999999999999874 68888888888888888888 46777777777766
Q ss_pred HHHHHHHHHHHcC--------------------------------------------CC--ChHHHHHHHHHHHHhhHhH
Q psy4772 125 RALALTADAITMN--------------------------------------------PA--NYTVWQYRREILKALNKDL 158 (235)
Q Consensus 125 eAl~~~~~al~l~--------------------------------------------P~--~~~aw~~r~~~l~~l~~~~ 158 (235)
+|+..++++++++ |. ++.+|+.+|.++..+| ++
T Consensus 151 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g-~~ 229 (365)
T 4eqf_A 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG-EF 229 (365)
T ss_dssp HHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT-CH
T ss_pred HHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC-CH
Confidence 6666666665554 55 7888888999999988 48
Q ss_pred HHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 159 eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
++|+.+++++++++|.++.+|+.+|.++...|++++|+..+++++.++|++..+|.++|.++..+|+..+|.-.
T Consensus 230 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 230 NRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888776543
No 19
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.92 E-value=3e-24 Score=195.81 Aligned_cols=178 Identities=12% Similarity=0.049 Sum_probs=169.5
Q ss_pred hhcH-HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc----
Q psy4772 46 CNLF-SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG---- 120 (235)
Q Consensus 46 ~~~~-~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~---- 120 (235)
.+++ ++|+.+|+++|+++|+++.+|+.+|.++..+|+++ +|+..|.++++++|+ +.+| +.+|.++...
T Consensus 115 ~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~-----~A~~~~~~al~~~p~-~~~~-~~lg~~~~~~~~~~ 187 (474)
T 4abn_A 115 TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVT-----SAHTCFSGALTHCKN-KVSL-QNLSMVLRQLQTDS 187 (474)
T ss_dssp SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHTTCCC-HHHH-HHHHHHHTTCCCSC
T ss_pred ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhhCCC-HHHH-HHHHHHHHHhccCC
Confidence 5789 99999999999999999999999999999999875 799999999999999 6888 6899999999
Q ss_pred -----cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh--------hHhHHHHHHHHHHHHHhCC---CChHHhHHHHH
Q psy4772 121 -----EKSERALALTADAITMNPANYTVWQYRREILKAL--------NKDLHQELKYIGEKIKENS---KNYQVWRHRQI 184 (235)
Q Consensus 121 -----~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l--------~~~~eeal~~~~~al~~~P---~n~~aw~~r~~ 184 (235)
|++++|+..++++++++|++..+|+.+|.++..+ |+ +++|+.+++++++++| .++.+|+++|.
T Consensus 188 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~lg~ 266 (474)
T 4abn_A 188 GDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI-SQQALSAYAQAEKVDRKASSNPDLHLNRAT 266 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH-HHHHHHHHHHHHHHCGGGGGCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch-HHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence 9999999999999999999999999999999999 95 9999999999999999 99999999999
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 185 IVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 185 ~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
++..+|++++|+..+++++.++|++..+|..++.++..+|+..++.-
T Consensus 267 ~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 267 LHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988887766653
No 20
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=1.9e-23 Score=183.04 Aligned_cols=178 Identities=10% Similarity=0.030 Sum_probs=121.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++++++|+++.+|.++|.++...|+++ +|+..|.++++++|+++.+| ..+|.++...|++++
T Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~~~ 153 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME-----GAVQAYVSALQYNPDLYCVR-SDLGNLLKALGRLEE 153 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSS-----HHHHHHHHHHHHCTTCTHHH-HHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCcHHHH-HHHHHHHHHccCHHH
Confidence 467888888888888888888888888888888888876 46666666666666666666 356666666666666
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..|+++++++|++..+|+.+|.++...| ++++|+..++++++++|.+..+|..+|.++...|++++|+..+++++.+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQG-EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666666666666666666666666666 3666666666666666666666666666666666666666666666666
Q ss_pred CCCChHHhHHHHHHHhhcCCccccc
Q psy4772 206 DAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+|++..+|.++|.++...|+.+++.
T Consensus 233 ~p~~~~~~~~l~~~~~~~g~~~~A~ 257 (388)
T 1w3b_A 233 SPNHAVVHGNLACVYYEQGLIDLAI 257 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666665555554443
No 21
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=2.3e-23 Score=182.46 Aligned_cols=177 Identities=12% Similarity=0.043 Sum_probs=109.8
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|++++|+..|+++++++|+++.+|..+|.++...|+++ +|+..|.+++.++|+++.+| +.+|.++...|++++|
T Consensus 183 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-----~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~~~A 256 (388)
T 1w3b_A 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD-----RAVAAYLRALSLSPNHAVVH-GNLACVYYEQGLIDLA 256 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTT-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhhCcCCHHHH-HHHHHHHHHcCCHHHH
Confidence 45555555566666666666666666666665555554 45666666666666666666 3566666666666666
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
+..++++++++|.++.+|+.++.++...| ++++|+.+++++++++|.+..+|+.++.++...|++++|+..++++++++
T Consensus 257 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 257 IDTYRRAIELQPHFPDAYCNLANALKEKG-SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666 36666666666666666666666666666666666666666666666666
Q ss_pred CCChHHhHHHHHHHhhcCCccccc
Q psy4772 207 AKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 207 p~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
|.+..+|.+++.++...|+..++.
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666666555544
No 22
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=2.8e-23 Score=169.15 Aligned_cols=179 Identities=13% Similarity=0.182 Sum_probs=150.5
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+.+|+++++.+|.++.+|..+|.++...|+++ +|+..+.+++.++|.+..+| +.+|.++...|++++
T Consensus 36 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~la~~~~~~~~~~~ 109 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELE-----RALAFYDKALELDSSAATAY-YGAGNVYVVKEMYKE 109 (243)
T ss_dssp ------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCcchHHH-HHHHHHHHHhccHHH
Confidence 477888888899999888988889999998888888764 78888888888888888888 578888888888889
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..+++++.++|.+..+|..++.++..+| ++++|+..++++++.+|.+..+|..+|.++...|++++|+..+++++..
T Consensus 110 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 110 AKDMFEKALRAGMENGDLFYMLGTVLVKLE-QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999988888888888888888888888 4888888898888888888888888888888888888898888888888
Q ss_pred CCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 206 DAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
+|.+..+|..++.++..+|+..++.-
T Consensus 189 ~~~~~~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 189 DPGHADAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHH
Confidence 88888888888888888888776653
No 23
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.91 E-value=4.3e-24 Score=202.98 Aligned_cols=174 Identities=5% Similarity=-0.136 Sum_probs=163.2
Q ss_pred hhhhcHHHHHHHHHhHH--------hcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q psy4772 44 QKCNLFSDELSYIEGLI--------SHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGA 115 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL--------~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~ 115 (235)
...+++++|++.+++++ +.+|+++.+|+.+|.++..+|+++ +|+..|+++++++|+++.+| +.+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~-----~A~~~~~~al~~~p~~~~a~-~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVA-----KATRKLDDLAERVGWRWRLV-WYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHHCCCHHHH-HHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHH-----HHHHHHHHHhccCcchHHHH-HHHHH
Confidence 44688999999999999 999999999999999999999875 79999999999999999999 68999
Q ss_pred HHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHH
Q psy4772 116 VVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEE 195 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~A 195 (235)
++...|++++|+..|+++++++|+++.+|+++|.++..+|+ +++ +.+|+++++++|.+..+|+++|.++..+|++++|
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~-~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN-TDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC-CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999995 899 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 196 LALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 196 l~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
+..|++|++++|.+..+|.+++.++...+.
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999865443
No 24
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.3e-23 Score=168.98 Aligned_cols=179 Identities=10% Similarity=0.097 Sum_probs=164.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC-------CchhhHHHHHHHh
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN-------ESPWNYLRGAVVN 118 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~-------~~aw~~~~g~il~ 118 (235)
.|++++|+.+|+++++.+ .++.+|..+|.++..+|+++ +|+..+.+++.++|.+ +.+| +.+|.++.
T Consensus 18 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~ 90 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYE-----TAISTLNDAVEQGREMRADYKVISKSF-ARIGNAYH 90 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHH-----HHHHHHHHHHHhCcccccchHHHHHHH-HHHHHHHH
Confidence 478999999999999999 99999999999999999874 7999999999999988 5788 57999999
Q ss_pred cccccHHHHHHHHHHHH--------------------------cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 119 AGEKSERALALTADAIT--------------------------MNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 119 ~~~~~~eAl~~~~~al~--------------------------l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
..|++++|+..+++++. .+|.+..+|..+|.++...| ++++|+.+++++++.+
T Consensus 91 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~ 169 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS-DWPNAVKAYTEMIKRA 169 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcC
Confidence 99999999999999999 78888999999999999999 5999999999999999
Q ss_pred CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 173 SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 173 P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
|.++.+|+.+|.++...|++++|+..+++++.++|++..+|..+|.++..+|+..++.-.
T Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988776543
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=8.5e-23 Score=177.19 Aligned_cols=182 Identities=12% Similarity=0.108 Sum_probs=168.5
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH---------------------------------------H
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP---------------------------------------E 86 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e---------------------------------------~ 86 (235)
.|++++|+..|+++++++|+++.+|..+|.++..+|++++ +
T Consensus 112 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (365)
T 4eqf_A 112 NENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCH
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhh
Confidence 4789999999999999999999999999999999998643 2
Q ss_pred HHHHHHHHHHHHHHhCCC--CCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHH
Q psy4772 87 VIQREIDYCRDKIQIAPK--NESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKY 164 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~--~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~ 164 (235)
.+++|+..|.+++.++|. ++.+| +.+|.++...|++++|+.+++++++++|+++.+|+.+|.++..+| ++++|+.+
T Consensus 192 ~~~~A~~~~~~al~~~p~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~ 269 (365)
T 4eqf_A 192 VLEGVKELYLEAAHQNGDMIDPDLQ-TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD-RSEEAVEA 269 (365)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCccCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 467888889999999999 88899 589999999999999999999999999999999999999999999 59999999
Q ss_pred HHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC------------ChHHhHHHHHHHhhcCCcccc
Q psy4772 165 IGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK------------NYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 165 ~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~------------n~~aw~~r~~~l~~l~~~~~~ 229 (235)
++++++++|.+..+|+++|.++..+|++++|+..+++++.++|+ +..+|.+++.++..+|+.+.+
T Consensus 270 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 270 YTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 99999999999999999999999999999999999999999998 478999999999999987543
No 26
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=6.7e-23 Score=170.14 Aligned_cols=172 Identities=8% Similarity=0.105 Sum_probs=160.9
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCch----hhHHHHHHHhccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESP----WNYLRGAVVNAGE 121 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~a----w~~~~g~il~~~~ 121 (235)
.|++++|+..|+++++.+|+++.+|..+|.++..+|+++ +|+..+.+++. .|.++.. | +.+|.++...|
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~-----~A~~~~~~a~~-~~~~~~~~~~~~-~~lg~~~~~~~ 88 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYD-----LAQKDIETYFS-KVNATKAKSADF-EYYGKILMKKG 88 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHH-----HHHHHHHHHHT-TSCTTTCCHHHH-HHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHh-ccCchhHHHHHH-HHHHHHHHHcc
Confidence 588999999999999999999999999999999999875 79999999999 6666555 7 57999999999
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
++++|+..++++++++|.+..+|..+|.++..+| ++++|+.+++++++++|.+..+|+++|......+++++|+..+++
T Consensus 89 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG-NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT-CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 599999999999999999999999999555566699999999999
Q ss_pred HHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 202 ILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 202 ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
++.++|.+..+|..+|.++..+|+
T Consensus 168 a~~~~p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 168 VLELKPNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHST
T ss_pred HHHhCccchHHHHHHHHHHHHcCc
Confidence 999999999999999999988887
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=1.6e-22 Score=174.62 Aligned_cols=138 Identities=13% Similarity=0.196 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhCCC--CCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 90 REIDYCRDKIQIAPK--NESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 90 ~Al~~~~kal~l~p~--~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
+|+..|.+++.++|. ++.+| +.+|.++...|++++|+..+++++.++|+++.+|+.+|.++..+| ++++|+.++++
T Consensus 199 ~A~~~~~~a~~~~p~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~ 276 (368)
T 1fch_A 199 EVKELFLAAVRLDPTSIDPDVQ-CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN-QSEEAVAAYRR 276 (368)
T ss_dssp HHHHHHHHHHHHSTTSCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcccHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Confidence 344444444444444 34444 345556666666666666666666666666666666666666666 36666666666
Q ss_pred HHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC-----------hHHhHHHHHHHhhcCCcccc
Q psy4772 168 KIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN-----------YHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 168 al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n-----------~~aw~~r~~~l~~l~~~~~~ 229 (235)
+++++|.+..+|+.+|.++..+|++++|+..+++++.++|++ ..+|.+++.++..+|+.+++
T Consensus 277 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 277 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 666666666666666666666666666666666666666665 56666666666666655544
No 28
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=2e-22 Score=170.78 Aligned_cols=180 Identities=9% Similarity=-0.029 Sum_probs=171.9
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc-ccH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE-KSE 124 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~-~~~ 124 (235)
.|++++|+..|+++++.+|.+..++..++.++...|+++ +|+..+.++++.+|.++.+| +.+|.++...| +++
T Consensus 35 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~ 108 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN-----ELFYLSHKLVDLYPSNPVSW-FAVGCYYLMVGHKNE 108 (330)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHH-----HHHHHHHHHHHHCTTSTHHH-HHHHHHHHHSCSCHH
T ss_pred cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHH-----HHHHHHHHHHHhCcCCHHHH-HHHHHHHHHhhhhHH
Confidence 489999999999999999999999999999999999864 79999999999999999999 68999999999 999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+|+.++++++.++|.+..+|..+|.++..+| ++++|+.+++++++.+|.+..+|..+|.++...|++++|+..+++++.
T Consensus 109 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 109 HARRYLSKATTLEKTYGPAWIAYGHSFAVES-EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 599999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 205 QDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 205 ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
++|.+..+|..+|.++...|+..++.-.
T Consensus 188 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHcccHHHHHHH
Confidence 9999999999999999999988776543
No 29
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.90 E-value=6.2e-24 Score=164.67 Aligned_cols=139 Identities=5% Similarity=0.021 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHH
Q psy4772 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYI 165 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~ 165 (235)
+.+++|+..+.+++..+|+++.+| +.+|.++...|++++|+.+++++|+++|+++.+|+.+|.++..+| ++++|+.+|
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~-~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~-~~~~A~~~~ 88 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKG-FYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE-NTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred ChHHHHHHHHHHhcccCcccHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-chHHHHHHH
Confidence 345678888888888888888887 678888888888888888888888888888888888888888888 478888888
Q ss_pred HHHHHhCCCChHHhHHHHHHHHHcCCchHHHHH-HHHHHHhCCCChHHhHHHHHHHhhcCCc
Q psy4772 166 GEKIKENSKNYQVWRHRQIIVEWMGEPDEELAL-TAAILAQDAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 166 ~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~-~~~ai~ldp~n~~aw~~r~~~l~~l~~~ 226 (235)
+++++++|+++.+|+.+|.++...|++++|... +++|++++|+|+.+|..++.++...|++
T Consensus 89 ~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~d 150 (150)
T 4ga2_A 89 RRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGED 150 (150)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCcC
Confidence 888888888888888888888888887766654 5788888888888888888887777754
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=4.7e-22 Score=171.71 Aligned_cols=181 Identities=11% Similarity=0.120 Sum_probs=151.4
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+..|+++++.+|.++.+|+.+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|+++
T Consensus 76 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~-~~l~~~~~~~g~~~ 149 (368)
T 1fch_A 76 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL-----LAISALRRCLELKPDNQTAL-MALAVSFTNESLQR 149 (368)
T ss_dssp HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH-----HHHHHHHHHHhcCCCCHHHH-HHHHHHHHHcCCHH
Confidence 3578999999999999999999999999999999999874 68888888888888888888 57888887777777
Q ss_pred HHHHHHHHHHHc-------------------------------------------------CCC--ChHHHHHHHHHHHH
Q psy4772 125 RALALTADAITM-------------------------------------------------NPA--NYTVWQYRREILKA 153 (235)
Q Consensus 125 eAl~~~~~al~l-------------------------------------------------~P~--~~~aw~~r~~~l~~ 153 (235)
+|+..+++++.+ +|. ++.+|..+|.++..
T Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~ 229 (368)
T 1fch_A 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229 (368)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence 666666665555 455 67778888888888
Q ss_pred hhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 154 LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 154 l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
.| ++++|+.+++++++++|.++.+|+.+|.++...|++++|+..+++++.++|.+..+|..+|.++..+|+..+|.-.
T Consensus 230 ~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 307 (368)
T 1fch_A 230 SG-EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307 (368)
T ss_dssp TT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88 4888899999988888888888888888888888899999999999988898888888888888888887666543
No 31
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.7e-22 Score=171.17 Aligned_cols=175 Identities=10% Similarity=0.090 Sum_probs=92.4
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERAL 127 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl 127 (235)
++++|+.+++++++.+|.++.+|..+|.++...|++ ++|+..+.++++++|.+..+| +.+|.++...|++++|+
T Consensus 106 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-----~~A~~~~~~a~~~~~~~~~~~-~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH-----DQAMAAYFTAAQLMKGCHLPM-LYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH-----HHHHHHHHHHHHHTTTCSHHH-HHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH-----HHHHHHHHHHHHhccccHHHH-HHHHHHHHHHhhHHHHH
Confidence 445555555555555555555555555555554443 245555555555555555555 34555555555555555
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC---------CCChHHhHHHHHHHHHcCCchHHHHH
Q psy4772 128 ALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN---------SKNYQVWRHRQIIVEWMGEPDEELAL 198 (235)
Q Consensus 128 ~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~---------P~n~~aw~~r~~~l~~l~~~~~Al~~ 198 (235)
..+++++.++|.++.+|+.+|.++..+| ++++|+.+++++++.. |.+..+|..+|.++...|++++|+..
T Consensus 180 ~~~~~al~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIAPEDPFVMHEVGVVAFQNG-EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5555555555555555555555555555 2555555555555544 44445555555555555555555555
Q ss_pred HHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 199 TAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 199 ~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
+++++.++|++..+|..+|.++..+|+..+|
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 5555555555555555555555555554443
No 32
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.5e-22 Score=171.52 Aligned_cols=179 Identities=14% Similarity=0.075 Sum_probs=164.7
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++++.+|+++.+|+.+|.++..+|+++ +|+..+.+++.++|.+..+| +.+|.++...|++++
T Consensus 16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSK-----AALPDLTKVIALKMDFTAAR-LQRGHLLLKQGKLDE 89 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCHHH
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHH-----HHHHHHHHHHHhCCCcchHH-HHHHHHHHHcCChHH
Confidence 478999999999999999999999999999999999874 79999999999999999999 689999999999999
Q ss_pred HHHHHHHHHHcCC---CChHHHHHH------------HHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 126 ALALTADAITMNP---ANYTVWQYR------------REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 126 Al~~~~~al~l~P---~~~~aw~~r------------~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
|+..+++++.++| ++..++..+ +.++...| ++++|+.+++++++.+|.++.+|..+|.++...|
T Consensus 90 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 90 AEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA-DYTAAITFLDKILEVCVWDAELRELRAECFIKEG 168 (359)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCC
Confidence 9999999999999 999999887 68888888 5999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 191 EPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 191 ~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
++++|+..+++++.++|.+..+|..+|.++..+|+..++.-
T Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 169 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999988888766643
No 33
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=6.4e-22 Score=158.74 Aligned_cols=178 Identities=10% Similarity=0.079 Sum_probs=166.5
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc-cccH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG-EKSE 124 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~-~~~~ 124 (235)
.|++++|+..++++++.+|+++.+|..+|.++...|+++ +|+..+.+++.++|.+..+| +.+|.++... |+++
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~-~~l~~~~~~~~~~~~ 94 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVND-----KAQESFRQALSIKPDSAEIN-NNYGWFLCGRLNRPA 94 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHTTTCCHH
T ss_pred HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChH-----HHHHHHHHHHHhCCCChHHH-HHHHHHHHHhcCcHH
Confidence 588999999999999999999999999999999999874 79999999999999999999 6899999999 9999
Q ss_pred HHHHHHHHHHH--cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 125 RALALTADAIT--MNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 125 eAl~~~~~al~--l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
+|+..+++++. .+|.+..+|+.+|.++..+| ++++|+.+++++++.+|.+..+|..++.++...|++++|+..++++
T Consensus 95 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQG-QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173 (225)
T ss_dssp HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999 77888999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred HHhCC-CChHHhHHHHHHHhhcCCccccc
Q psy4772 203 LAQDA-KNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 203 i~ldp-~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+.++| .+..+|...+.+....|+..++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 174 QSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 99999 99999987777777777765543
No 34
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.89 E-value=6.3e-22 Score=161.09 Aligned_cols=171 Identities=12% Similarity=0.144 Sum_probs=160.3
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..++++++.+|.+..++..+|.++..+|+++ +|+..+.++++++|.++.+| +.+|.++...|++++
T Consensus 70 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 70 VNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYK-----EAKDMFEKALRAGMENGDLF-YMLGTVLVKLEQPKL 143 (243)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHTCCSHHHH-HHHHHHHHHTSCHHH
T ss_pred cCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhccHHH
Confidence 588999999999999999999999999999999999874 79999999999999999999 689999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..+++++.++|++..+|..+|.++...| ++++|+..++++++.+|.+..+|..+|.++...|++++|+.++++++.+
T Consensus 144 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 144 ALPYLQRAVELNENDTEARFQFGMCLANEG-MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999 5999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHhHHHHHHHhhc
Q psy4772 206 DAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~~l 223 (235)
+|++..++..++.+....
T Consensus 223 ~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp CTTCHHHHHHHTC-----
T ss_pred CcchHHHHHHHHHHHhhc
Confidence 999999999887765443
No 35
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=1.9e-22 Score=183.91 Aligned_cols=179 Identities=12% Similarity=0.090 Sum_probs=170.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCC-CHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQF-TPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~-~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
..+++++..++.++...|.++.+|+.+|.++...|++ + +|+..|.++++++|.++.+| +.+|.++...|++++
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~-----~A~~~~~~al~~~p~~~~a~-~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSP-----EAEVLLSKAVKLEPELVEAW-NQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHH-----HHHHHHHHHHhhCCCCHHHH-HHHHHHHHHcCCHHH
Confidence 4578999999999999999999999999999999998 5 79999999999999999999 689999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHh---------hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc-------
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKAL---------NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM------- 189 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l---------~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l------- 189 (235)
|+.+|+++++++|+ ..+|..+|.++..+ |+ +++|+.+++++++++|++..+|+.+|.++..+
T Consensus 156 A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~ 233 (474)
T 4abn_A 156 AHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH-VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQN 233 (474)
T ss_dssp HHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999 79999999999999 95 99999999999999999999999999999999
Q ss_pred -CCchHHHHHHHHHHHhCC---CChHHhHHHHHHHhhcCCcccccccc
Q psy4772 190 -GEPDEELALTAAILAQDA---KNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 190 -~~~~~Al~~~~~ai~ldp---~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
|++++|+.+|++|+.++| .++.+|+++|.++..+|+..+|.-.|
T Consensus 234 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 234 PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999 99999999999999999987776443
No 36
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=1.3e-22 Score=165.49 Aligned_cols=157 Identities=10% Similarity=0.029 Sum_probs=147.8
Q ss_pred CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCC-CCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 63 DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAP-KNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 63 ~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p-~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
.|.++.+|+++|.++...|+++ +|+..|.+++.++| .+..+| +.+|.++...|++++|+..++++++++|++.
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYA-----VAFEKYSEYLKLTNNQDSVTA-YNCGVCADNIKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHTTTCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH
T ss_pred cccCHHHHHHHHHHHHHccCHH-----HHHHHHHHHHhccCCCCcHHH-HHHHHHHHHhhcHHHHHHHHHHHHHhCcchH
Confidence 4567799999999999999875 79999999999999 899999 6799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh-------HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC--ChHH
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNY-------QVWRHRQIIVEWMGEPDEELALTAAILAQDAK--NYHA 212 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~-------~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~--n~~a 212 (235)
.+|..+|.++..+| ++++|+.+++++++++|++. .+|+.+|.++...|++++|++.++++++++|+ +..+
T Consensus 77 ~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 77 NAYIGKSAAYRDMK-NNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcc-cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 99999999999999 59999999999999999999 77999999999999999999999999999999 9999
Q ss_pred hHHHHHHHhhcCCc
Q psy4772 213 WQHRQWVINLLDDD 226 (235)
Q Consensus 213 w~~r~~~l~~l~~~ 226 (235)
|.++|.++..+|..
T Consensus 156 ~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 156 LYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999766665
No 37
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.88 E-value=1.2e-22 Score=157.41 Aligned_cols=139 Identities=12% Similarity=0.142 Sum_probs=131.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.+++++|++.+.+++..+|+++.+++.+|.++..+|+|+ +|+..|+++|+++|+++.+| +.+|.++...|++++
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~-----~A~~~~~~al~~~p~~~~a~-~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYD-----LAKKYICTYINVQERDPKAH-RFLGLLYELEENTDK 83 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCchHH
Confidence 578899999999999999999999999999999999875 79999999999999999999 689999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHH-HHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKY-IGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~-~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
|+.+|+++++++|+++.+|+++|.++..+|+ ++++... ++++++++|+|+.+|..++.++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDV-TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999995 7776664 699999999999999999999988875
No 38
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.88 E-value=2.1e-22 Score=151.88 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=89.6
Q ss_pred HHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 97 DKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 97 kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
++..+||+...+| ..+|.++...|++++|+.+|+++|+++|.++.+|+++|.++..+| ++++|+.+++++|+++|+++
T Consensus 4 r~a~inP~~a~~~-~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 4 RLAYINPELAQEE-KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM-EFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp ---CCCHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHCHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc-cHHHHHHHHHHHHHhhhhhh
Confidence 3445677777777 467777777777777777777777777777777777777777777 37777777777777777777
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
.+|+++|.++..+|++++|++.|+++++++|+|..++..++.++
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777776654
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=9.8e-22 Score=161.56 Aligned_cols=179 Identities=11% Similarity=0.035 Sum_probs=170.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..++++++.+|.++.+|..+|.++...|+++ +|+..+.+++.++|.+..+| +.+|.++...|++++
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~-~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPK-----LADEEYRKALASDSRNARVL-NNYGGFLYEQKRYEE 123 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHCcCcHHHH-HHHHHHHHHHhHHHH
Confidence 478999999999999999999999999999999999874 79999999999999999999 589999999999999
Q ss_pred HHHHHHHHHH--cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 126 ALALTADAIT--MNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 126 Al~~~~~al~--l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
|+..+++++. .+|.+..+|..++.++..+| ++++|+.+++++++.+|.+..+|..++.++...|++++|+..+++++
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMK-KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999 89999999999999999999 59999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 204 AQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 204 ~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
..+|.+..+|..++.++..+|+..++.-
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 203 QGGGQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp TTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999999988888776643
No 40
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=2e-21 Score=164.35 Aligned_cols=178 Identities=10% Similarity=0.053 Sum_probs=134.7
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHH-------------
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLR------------- 113 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~------------- 113 (235)
|++++|+.+++++++.+|.++.+|..+|.++...|++ ++|+..+.+++..+|.+...+ ..+
T Consensus 69 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~-----~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 142 (327)
T 3cv0_A 69 EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA-----NAALASLRAWLLSQPQYEQLG-SVNLQADVDIDDLNVQ 142 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHTSTTTTTC------------------
T ss_pred CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHhCCccHHHH-HHHhHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555544 356666666666666666666 233
Q ss_pred -HH-HHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 114 -GA-VVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 114 -g~-il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
|. ++...|++++|+..++++++.+|.+..++..+|.++..+| ++++|+.+++++++.+|.++.+|..+|.++...|+
T Consensus 143 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (327)
T 3cv0_A 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN-NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNR 221 (327)
T ss_dssp ---CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 44 4666677777888888888888888899999999999998 48999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 192 PDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 192 ~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
+++|+..+++++.++|.+..+|..++.++..+|+..+|.-
T Consensus 222 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999999999999999988888776654
No 41
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.88 E-value=3.3e-22 Score=162.59 Aligned_cols=165 Identities=7% Similarity=0.031 Sum_probs=143.5
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhh----------------HHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchh
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQ----------------RYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~----------------~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw 109 (235)
.|++++|+..|+++++++|+++.+|+. +|.++..+|+++ +|+..|.++++++|+++.+|
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~ 91 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYD-----KAYLFYKELLQKAPNNVDCL 91 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHCCCCHHHH
Confidence 588999999999999999999999999 999999999875 79999999999999999999
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK-DLHQELKYIGEKIKENSKNYQVWRHRQIIVEW 188 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~-~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~ 188 (235)
+.+|.++...|++++|+.+|+++++++|+++.+|+++|.++...++ ....+...+++++...|. ..+|+++|.++..
T Consensus 92 -~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~ 169 (208)
T 3urz_A 92 -EACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLF 169 (208)
T ss_dssp -HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999987753 246677788888754443 3478999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 189 MGEPDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 189 l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
+|++++|+.+|++|+.++|+.. +...+..
T Consensus 170 ~~~~~~A~~~~~~al~l~P~~~-~~~~l~~ 198 (208)
T 3urz_A 170 TTRYEKARNSLQKVILRFPSTE-AQKTLDK 198 (208)
T ss_dssp HHTHHHHHHHHHHHTTTSCCHH-HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 9999999999999999999754 3344433
No 42
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=2.3e-21 Score=171.96 Aligned_cols=180 Identities=15% Similarity=0.099 Sum_probs=168.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++++.+|+++.+|+.+|.++...|+++ +|+..|.++++++|.+..+| +.+|.++...|++++
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSK-----AALPDLTKVIQLKMDFTAAR-LQRGHLLLKQGKLDE 112 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhcCCCcHHHH-HHHHHHHHHcCCHHH
Confidence 489999999999999999999999999999999999874 79999999999999999999 589999999999999
Q ss_pred HHHHHHHHHHcCCCCh---HHHHHH------------HHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 126 ALALTADAITMNPANY---TVWQYR------------REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 126 Al~~~~~al~l~P~~~---~aw~~r------------~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
|+..++++++++|.+. .+|... +.++...| ++++|+.+++++++.+|.+..+|+.+|.++...|
T Consensus 113 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (450)
T 2y4t_A 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG-DYTAAIAFLDKILEVCVWDAELRELRAECFIKEG 191 (450)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC
Confidence 9999999999999999 887665 66688888 5999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 191 EPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 191 ~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
++++|+..+++++.++|.+..+|..+|.++...|+..++.-.
T Consensus 192 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 192 EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999999999988776543
No 43
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=3e-21 Score=165.54 Aligned_cols=179 Identities=7% Similarity=0.043 Sum_probs=128.9
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhh-------cCCCC--HHHHHHHHHHHHHHHH-hCCCCCchhhHHHHHHHhc
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINH-------TTQFT--PEVIQREIDYCRDKIQ-IAPKNESPWNYLRGAVVNA 119 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~-------~~~~~--e~~~~~Al~~~~kal~-l~p~~~~aw~~~~g~il~~ 119 (235)
++|+..|+++|..+|.++.+|+++|.++.. .|++. ...+++|+..|+++++ ++|++..+| ..+|.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~-~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY-FAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHH-HHHHHHHHh
Confidence 577777777777788888888777777653 35541 1123467777777777 677777777 467777777
Q ss_pred ccccHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH-cCCchHHHH
Q psy4772 120 GEKSERALALTADAITMNPANYT-VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW-MGEPDEELA 197 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~~-aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~-l~~~~~Al~ 197 (235)
.|++++|...|+++++++|.++. +|...+.++.+.| .+++|+..|+++++.+|.+..+|...+.+... .|++++|+.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE-GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH-CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777788888888877777776 7777777777777 47777777777777777777777766555433 677777777
Q ss_pred HHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 198 LTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 198 ~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
.|++++.++|+++.+|..++.++..+|+..++.
T Consensus 191 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 777777777777777777777776666665543
No 44
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=5.4e-21 Score=163.17 Aligned_cols=178 Identities=10% Similarity=0.090 Sum_probs=128.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..++++++.+|.++.+|..+|.++...|+++ +|+..+.+++.++|.++.+| +.+|.++...|++++
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR-----KAISDLKAASKLKSDNTEAF-YKISTLYYQLGDHEL 206 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHTTCSCCHHHH-HHHHHHHHHHTCHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHH
Confidence 467777777777777777777777777777777777654 57777777777777777777 467777777777777
Q ss_pred HHHHHHHHHHcCCCChHHHHHH------------HHHHHHhhHhHHHHHHHHHHHHHhCCCChH----HhHHHHHHHHHc
Q psy4772 126 ALALTADAITMNPANYTVWQYR------------REILKALNKDLHQELKYIGEKIKENSKNYQ----VWRHRQIIVEWM 189 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r------------~~~l~~l~~~~eeal~~~~~al~~~P~n~~----aw~~r~~~l~~l 189 (235)
|+..++++++++|++..+|... +.++...| ++++|+..++++++.+|.+.. ++..+|.++...
T Consensus 207 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 207 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG-RYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 7777777777777777766533 55566666 377777777777777777663 345567777777
Q ss_pred CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 190 GEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
|++++|+..+++++.++|+++.+|..+|.++..+|+..+|.
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 326 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 326 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777777777777777777777777665554
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.1e-21 Score=160.41 Aligned_cols=169 Identities=11% Similarity=0.115 Sum_probs=155.2
Q ss_pred hhhcHHHHHHHHHhHHhcCCCc-------hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH-----------------
Q psy4772 45 KCNLFSDELSYIEGLISHDVRN-------NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ----------------- 100 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~-------~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~----------------- 100 (235)
..|++++|+..++++++++|++ +.+|..+|.++..+|+++ +|+..+.+++.
T Consensus 50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~~~~~~~~a 124 (258)
T 3uq3_A 50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLK-----KTIEYYQKSLTEHRTADILTKLRNAEKE 124 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHH-----HHHHHHHHHHhcCchhHHHHHHhHHHHH
Confidence 3589999999999999999988 799999999999999875 45566666665
Q ss_pred ---------hCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Q psy4772 101 ---------IAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKE 171 (235)
Q Consensus 101 ---------l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~ 171 (235)
.+|.++.+| +.+|.++...|++++|+..+++++.++|.++.+|..+|.++..+| ++++|+.+++++++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 125 LKKAEAEAYVNPEKAEEA-RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-SFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHCCHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHH-HHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHh
Confidence 888888999 689999999999999999999999999999999999999999999 599999999999999
Q ss_pred CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhC------CCChHHhHHHHHHH
Q psy4772 172 NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQD------AKNYHAWQHRQWVI 220 (235)
Q Consensus 172 ~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld------p~n~~aw~~r~~~l 220 (235)
+|.++.+|..+|.++..+|++++|+..+++++.++ |.+..++..++.++
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 99999999999999999999999999999999999 99998888776543
No 46
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.87 E-value=3.4e-21 Score=160.58 Aligned_cols=174 Identities=8% Similarity=-0.058 Sum_probs=155.2
Q ss_pred hhcHHHHHHHHHhHHhcCCCc---hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhc
Q psy4772 46 CNLFSDELSYIEGLISHDVRN---NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNA 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~---~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~ 119 (235)
.|+|++|+..|+++|+.+|.+ +.+++.+|.++..+|+++ +|+..|.++++++|+++ .++ +.+|.++..
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~-----~A~~~~~~~l~~~p~~~~~~~a~-~~lg~~~~~ 101 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYL-----LAASEYERFIQIYQIDPRVPQAE-YERAMCYYK 101 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCTTHHHHH-HHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHH-----HHHHHHHHHHHHCCCCchhHHHH-HHHHHHHHH
Confidence 489999999999999999999 999999999999999875 79999999999999765 477 689999999
Q ss_pred --------ccccHHHHHHHHHHHHcCCCChHHH-----------------HHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 120 --------GEKSERALALTADAITMNPANYTVW-----------------QYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 120 --------~~~~~eAl~~~~~al~l~P~~~~aw-----------------~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
.|++++|+..++++++++|++..++ +.+|.++..+| ++++|+..++++++.+|+
T Consensus 102 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 102 LSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRE-LYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp HCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT
T ss_pred hcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999998888 88899999999 599999999999999999
Q ss_pred ---ChHHhHHHHHHHHHc----------CCchHHHHHHHHHHHhCCCChHH---hHHHHHHHhhcCCc
Q psy4772 175 ---NYQVWRHRQIIVEWM----------GEPDEELALTAAILAQDAKNYHA---WQHRQWVINLLDDD 226 (235)
Q Consensus 175 ---n~~aw~~r~~~l~~l----------~~~~~Al~~~~~ai~ldp~n~~a---w~~r~~~l~~l~~~ 226 (235)
...+++.+|.++..+ |++++|+..+++++..+|+++.+ ...++.+...+++.
T Consensus 181 ~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 181 TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 456999999999987 88999999999999999999654 44455555555544
No 47
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.87 E-value=6.7e-22 Score=149.15 Aligned_cols=122 Identities=10% Similarity=0.073 Sum_probs=114.2
Q ss_pred hHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcC
Q psy4772 58 GLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMN 137 (235)
Q Consensus 58 ~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~ 137 (235)
++..+||+.+++|.++|.+++..|+|+ +|+..|+++|+++|.++.+| +.+|.++..+|++++|+..++++|+++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~ 77 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYP-----TAMRHYNEAVKRDPENAILY-SNRAACLTKLMEFQRALDDCDTCIRLD 77 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHhhHHHhhccHHHHHHHHHHHHHhh
Confidence 456689999999999999999999875 79999999999999999999 689999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 138 PANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 138 P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
|+++.+|+++|.++..+| ++++|+.+|+++++++|+|..++..++.++
T Consensus 78 p~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 78 SKFIKGYIRKAACLVAMR-EWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999 599999999999999999999999988764
No 48
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=2.3e-21 Score=163.93 Aligned_cols=180 Identities=10% Similarity=0.064 Sum_probs=164.8
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+.+|+++++.+|+++.+|..+|.++...|+++ +|+..+.++++++|.+..+| +.+|.++...|+++
T Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~-~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDG-----LAIIALNHARMLDPKDIAVH-AALAVSHTNEHNAN 106 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhcCcCCHHHH-HHHHHHHHHcCCHH
Confidence 3588999999999999999999999999999999999874 79999999999999999999 68999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHH--------------HH-HHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc
Q psy4772 125 RALALTADAITMNPANYTVWQYR--------------RE-ILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r--------------~~-~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l 189 (235)
+|+..+++++..+|.+..++..+ +. ++...| ++++|+.+++++++.+|.+..+|..+|.++...
T Consensus 107 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN-EYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHHHTSTTTTTC--------------------CCTTSHH-HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999888 66 677788 499999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 190 GEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
|++++|+..+++++.++|.+..+|..+|.++...|+..++.-
T Consensus 186 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999998877654
No 49
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=6.2e-21 Score=169.19 Aligned_cols=179 Identities=9% Similarity=0.085 Sum_probs=143.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++++.+|.++.++..+|.++...|+++ +|+..|.++++++|.++.+| +.+|.++...|++++
T Consensus 156 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPR-----KAISDLKAASKLKNDNTEAF-YKISTLYYQLGDHEL 229 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGG-----GGHHHHHHHHHHHCSCHHHH-HHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHH
Confidence 467888888899888888888888888888888888875 57788888888888888888 467888888888888
Q ss_pred HHHHHHHHHHcCCCChHHHHHH------------HHHHHHhhHhHHHHHHHHHHHHHhCCCCh----HHhHHHHHHHHHc
Q psy4772 126 ALALTADAITMNPANYTVWQYR------------REILKALNKDLHQELKYIGEKIKENSKNY----QVWRHRQIIVEWM 189 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r------------~~~l~~l~~~~eeal~~~~~al~~~P~n~----~aw~~r~~~l~~l 189 (235)
|+..+++++.++|++..++... +.++...| ++++|+.+++++++++|.++ .+|..+|.++.+.
T Consensus 230 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG-RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC
Confidence 8888888888888888777665 77777777 47888888888888888774 3677778888888
Q ss_pred CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 190 GEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
|++++|+..+++++.++|++..+|..+|.++..+|+..+|.-
T Consensus 309 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 350 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 350 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888888888888888888888888888877777766543
No 50
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.87 E-value=3.9e-21 Score=149.16 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=153.5
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..++++++.+|.++.++..+|.++...|+++ +|+..+.++++++|.+..+| +.+|.++...|++++
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~ 94 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVD-----RGTELLERSLADAPDNVKVA-TVLGLTYVQVQKYDL 94 (186)
T ss_dssp HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCHHH
T ss_pred hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhcCCCCHHHH-HHHHHHHHHhcCHHH
Confidence 478999999999999999999999999999999999874 79999999999999999999 589999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..+++++..+|.+..+|..+|.++..+| ++++|+.+++++++.+|.++.+|..+|.++...|++++|+.++++++.+
T Consensus 95 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 95 AVPLLIKVAEANPINFNVRFRLGVALDNLG-RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999 5999999999999999999999999999999999999999999999999
Q ss_pred CCCChHH
Q psy4772 206 DAKNYHA 212 (235)
Q Consensus 206 dp~n~~a 212 (235)
+|++...
T Consensus 174 ~~~~~~~ 180 (186)
T 3as5_A 174 DEGASVE 180 (186)
T ss_dssp HHCCCGG
T ss_pred CCCchhh
Confidence 9998754
No 51
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=1.1e-20 Score=161.85 Aligned_cols=172 Identities=7% Similarity=-0.075 Sum_probs=151.8
Q ss_pred hhcHHHHHHHHHhHHhc--CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccccc
Q psy4772 46 CNLFSDELSYIEGLISH--DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~ 123 (235)
.+++++|++.++++++. +|+++.+++.+|.++...|+++ +|+..+.+ |.+..++ ..+|.++..+|++
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~-----~Al~~l~~-----~~~~~~~-~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPD-----AALRTLHQ-----GDSLECM-AMTVQILLKLDRL 146 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHH-----HHHHHHTT-----CCSHHHH-HHHHHHHHHTTCH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHH-----HHHHHHhC-----CCCHHHH-HHHHHHHHHCCCH
Confidence 46789999999999986 6999999999999999999875 78888887 8999999 5799999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHH--HhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILK--ALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~--~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
++|+..++++++++|++.......+++.. ..| ++++|+.+++++++.+|.++.+|+.+|.++..+|++++|+..+++
T Consensus 147 ~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~-~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 147 DLARKELKKMQDQDEDATLTQLATAWVSLAAGGE-KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCch-HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999998755444443332 336 489999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 202 ILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 202 ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
++.++|+++.+|.++|.++..+|+..++
T Consensus 226 al~~~p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 226 ALDKDSGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999988654
No 52
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=1.9e-20 Score=169.39 Aligned_cols=178 Identities=11% Similarity=0.092 Sum_probs=162.4
Q ss_pred hcHHHHHHHHHhHHhcCCCchhH-------hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSA-------WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA 119 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a-------~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~ 119 (235)
+++++|+..|+++++.+|+++.+ +..+|.++...|++ ++|+..|.+++.++|. +.+| +.+|.++..
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~A~~~~~~~~~~~~~-~~~~-~~l~~~~~~ 288 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL-----LDAQVLLQESINLHPT-PNSY-IFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHCCC-HHHH-HHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH-----HHHHHHHHHHHhcCCC-chHH-HHHHHHHHH
Confidence 58899999999999999999764 66666677777665 4899999999999999 8899 589999999
Q ss_pred ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHH
Q psy4772 120 GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
.|++++|+..+++++.++|+++.+|..+|.++..+| ++++|+..++++++.+|.+..+|..+|.++...|++++|+..+
T Consensus 289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ-DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999 5999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 200 AAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 200 ~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
++++.++|++..+|.++|.++..+|+..++.-.
T Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999999999999988776543
No 53
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.86 E-value=5.2e-21 Score=177.03 Aligned_cols=164 Identities=12% Similarity=-0.009 Sum_probs=140.2
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|++++|+..++++++.+|+++.+|+.+|.++..+|+++ +|+..|+++++++|+++.+| +.+|.++...|++++|
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTT-----AGEMAVQRGLALHPGHPEAV-ARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHTTSTTCHHHH-HHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHCCCHHHH
Confidence 57799999999999999999999999999999999875 79999999999999999999 6899999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc---CCchHHHHHHHHHH
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM---GEPDEELALTAAIL 203 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l---~~~~~Al~~~~~ai 203 (235)
+.+++++++++|++..+|+.+|.++..+| ++++|+.+++++++++|++..++.+++.++..+ |++++|++.+++++
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAG-QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999 599999999999999999999999999999999 99999999999999
Q ss_pred HhCCCChHHhHHHH
Q psy4772 204 AQDAKNYHAWQHRQ 217 (235)
Q Consensus 204 ~ldp~n~~aw~~r~ 217 (235)
+.+|.+..+|..++
T Consensus 156 ~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 156 AQGVGAVEPFAFLS 169 (568)
T ss_dssp HHTCCCSCHHHHTT
T ss_pred hcCCcccChHHHhC
Confidence 99999988876554
No 54
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.85 E-value=2.2e-20 Score=171.57 Aligned_cols=179 Identities=9% Similarity=0.022 Sum_probs=149.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+.+|+++++.+|.+..+|..+|.++...|+++ +|++.|++++.++|.+..+| ..+|.++...|++++
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD-----QAISAYTTAARLFQGTHLPY-LFLGMQHMQLGNILL 459 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHTTTTCSHHH-HHHHHHHHHHTCHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCccchHHH-HHHHHHHHHcCCHHH
Confidence 477888888888888888888888888888888888764 68888888888888888888 468888888888888
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh------CCCC-hHHhHHHHHHHHHcCCchHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKE------NSKN-YQVWRHRQIIVEWMGEPDEELAL 198 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~------~P~n-~~aw~~r~~~l~~l~~~~~Al~~ 198 (235)
|+..|+++++++|.++.+|+.++.++...| ++++|+.+++++++. +|.+ ..+|..++.++...|++++|+..
T Consensus 460 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYALFQYDPLLLNELGVVAFNKS-DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 888888888888888888888888888888 488888888888887 5665 67888888888888888888888
Q ss_pred HHHHHHhCCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 199 TAAILAQDAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 199 ~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
+++++.++|.+..+|..++.++...|+..+|.-
T Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 539 LNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 888888888888888888888888888766653
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.85 E-value=2.4e-20 Score=154.43 Aligned_cols=158 Identities=8% Similarity=-0.012 Sum_probs=99.8
Q ss_pred hcHHHHHHHHHhHHhc----CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccc
Q psy4772 47 NLFSDELSYIEGLISH----DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEK 122 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~----~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~ 122 (235)
+++++|+..|+++++. +|.++.+|+.+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~-~~la~~~~~~~~ 92 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA-----LARNDFSQALAIRPDMPEVF-NYLGIYLTQAGN 92 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCCCCHHHH-HHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHH-----HHHHHHHHHHHcCCCcHHHH-HHHHHHHHHccC
Confidence 4556666666666665 3455666666666666666553 56666666666666666666 456666666666
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
+++|+.++++++.++|.+..+|+.+|.++..+| ++++|+.+++++++++|.+.......+.. ...|++++|+..++++
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG-RDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 666666666666666666666666666666666 36666666666666666666554444433 3446666666666666
Q ss_pred HHhCCCChHH
Q psy4772 203 LAQDAKNYHA 212 (235)
Q Consensus 203 i~ldp~n~~a 212 (235)
+...|.+...
T Consensus 171 ~~~~~~~~~~ 180 (275)
T 1xnf_A 171 FEKSDKEQWG 180 (275)
T ss_dssp HHHSCCCSTH
T ss_pred HhcCCcchHH
Confidence 6665555333
No 56
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.2e-20 Score=169.42 Aligned_cols=181 Identities=15% Similarity=0.069 Sum_probs=120.0
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH-----------------------------HHHHHHHHHHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP-----------------------------EVIQREIDYCRD 97 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e-----------------------------~~~~~Al~~~~k 97 (235)
|++++|+..++++++.+|+ +.+|..+|.++...|++++ +.+++|+..+.+
T Consensus 251 ~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5666666666666666666 6666666666666666542 123356666666
Q ss_pred HHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 98 al~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
++.++|.+..+| ..+|.++...|++++|+..+++++..+|.++.+|..+|.++..+| ++++|+.+++++++.+|.+..
T Consensus 330 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 330 AKELDPENIFPY-IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN-DFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp HHHTCSSCSHHH-HHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHhChhhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhhccch
Confidence 666666666666 456666666666666777677666666666666666666666666 367777777777766666644
Q ss_pred ------HhHHHHHHHHH---cCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 178 ------VWRHRQIIVEW---MGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 178 ------aw~~r~~~l~~---l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+|+.+|.++.. .|++++|+..+++++.++|++..+|..++.++..+|+..++.
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence 66677777766 677777777777777777777777777777666666655543
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.85 E-value=2.6e-20 Score=154.44 Aligned_cols=180 Identities=8% Similarity=-0.022 Sum_probs=161.7
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhH----hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSA----WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG 120 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a----~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~ 120 (235)
..|++++|+..++++++ .|.++.. |..+|.++..+|+++ +|+..|.+++.++|.++.+| ..+|.++...
T Consensus 49 ~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~-~~l~~~~~~~ 121 (272)
T 3u4t_A 49 ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDS-----LAIQQYQAAVDRDTTRLDMY-GQIGSYFYNK 121 (272)
T ss_dssp HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHSTTCTHHH-HHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHH-----HHHHHHHHHHhcCcccHHHH-HHHHHHHHHc
Confidence 35899999999999999 6666555 999999999999874 79999999999999999999 6899999999
Q ss_pred cccHHHHHHHHHHHHcCCCChHHHHHHH-HHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC---chHHH
Q psy4772 121 EKSERALALTADAITMNPANYTVWQYRR-EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE---PDEEL 196 (235)
Q Consensus 121 ~~~~eAl~~~~~al~l~P~~~~aw~~r~-~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~---~~~Al 196 (235)
|++++|+.+++++++++|.++.+|+++| .++... ++++|+.+++++++++|.+..+|+.+|.++..+++ +++|+
T Consensus 122 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 199 (272)
T 3u4t_A 122 GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK--EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK 199 (272)
T ss_dssp TCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTH
T ss_pred cCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHH
Confidence 9999999999999999999999999999 555544 59999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhC---CC-----ChHHhHHHHHHHhhcCCcccccccc
Q psy4772 197 ALTAAILAQD---AK-----NYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 197 ~~~~~ai~ld---p~-----n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
..+++++.+. |. ...+|.++|.++..+|+..+|.-.|
T Consensus 200 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 200 PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999987 54 2368999999999999887775433
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=4.3e-20 Score=158.36 Aligned_cols=175 Identities=10% Similarity=-0.018 Sum_probs=158.3
Q ss_pred HHHHHHHHHhHHh-cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc-hhhHHHHHHHhcccccHHH
Q psy4772 49 FSDELSYIEGLIS-HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES-PWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 49 ~~~Al~~~~~aL~-~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~-aw~~~~g~il~~~~~~~eA 126 (235)
+++|+..|++||+ ++|++..+|..+|.++...|+++ +|+..|+++++++|.++. +| ...|.++...|++++|
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~al~~~p~~~~~~~-~~~~~~~~~~~~~~~A 153 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE-----KVHSIYNRLLAIEDIDPTLVY-IQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHTSSSSCTHHHH-HHHHHHHHHHHCHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHhccccCccHHH-HHHHHHHHHhcCHHHH
Confidence 3899999999999 79999999999999999999764 799999999999999997 99 5899999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKA-LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~-l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
+..|+++++.+|.+..+|...+.+... +| ++++|+.+|+++++.+|+++.+|..++.++..+|++++|+..|++++..
T Consensus 154 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 154 RMIFKKAREDARTRHHVYVTAALMEYYCSK-DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHTSTTCCTHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999998877666443 57 5999999999999999999999999999999999999999999999995
Q ss_pred ---CC-CChHHhHHHHHHHhhcCCccccc
Q psy4772 206 ---DA-KNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 206 ---dp-~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+| +....|...+.+....|+.+.+.
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 66 48889999998888888765543
No 59
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=1.3e-20 Score=170.44 Aligned_cols=176 Identities=11% Similarity=0.082 Sum_probs=98.9
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eA 126 (235)
|++++|+..++++++.+|+ +.+|..+|.++...|+++ +|+..+.+++.++|+++.+| +.+|.++...|++++|
T Consensus 257 ~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQ-----EFFKFFQKAVDLNPEYPPTY-YHRGQMYFILQDYKNA 329 (537)
T ss_dssp TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHH-----HHHHHHHHHhccCCCCHHHH-HHHHHHHHhcCCHHHH
Confidence 4556666666666666666 566666666666665553 35555555555555555555 3455555555555555
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc-----------------
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM----------------- 189 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l----------------- 189 (235)
+..+++++.++|.+..+|..+|.++..+| ++++|+.+++++++.+|.++.+|..+|.++...
T Consensus 330 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 330 KEDFQKAQSLNPENVYPYIQLACLLYKQG-KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHHCTTCSHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 55555555555555555555555555555 245555555555555555555555555444444
Q ss_pred ---------------------------------CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 190 ---------------------------------GEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 190 ---------------------------------~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
|++++|+..+++++.++|++..+|.++|.++..+|+..+|.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 55555666666666666777777777777776666665544
No 60
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.84 E-value=9.1e-20 Score=149.72 Aligned_cols=164 Identities=9% Similarity=-0.001 Sum_probs=156.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH--hCCCCCchhhHHHHHHHhccccc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ--IAPKNESPWNYLRGAVVNAGEKS 123 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~--l~p~~~~aw~~~~g~il~~~~~~ 123 (235)
.|++++|+..++++++.+|.+..+|..+|.++...|+++ +|+..+.+++. .+|.+..+| +.+|.++...|++
T Consensus 84 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~-----~A~~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~ 157 (252)
T 2ho1_A 84 EMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYE-----EAYQRLLEASQDTLYPERSRVF-ENLGLVSLQMKKP 157 (252)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHTTCTTCTTHHHHH-HHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHhCccCcccHHHH-HHHHHHHHHcCCH
Confidence 588999999999999999999999999999999999874 79999999999 889999999 5899999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
++|+..++++++++|.+..+|..++.++..+| ++++|+.+++++++.+|.+..+|..++.++...|++++|+..+++++
T Consensus 158 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 158 AQAKEYFEKSLRLNRNQPSVALEMADLLYKER-EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 59999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHhHHH
Q psy4772 204 AQDAKNYHAWQHR 216 (235)
Q Consensus 204 ~ldp~n~~aw~~r 216 (235)
.++|++..++..+
T Consensus 237 ~~~p~~~~~~~~l 249 (252)
T 2ho1_A 237 RLYPGSLEYQEFQ 249 (252)
T ss_dssp HHCTTSHHHHHHH
T ss_pred HHCCCCHHHHHHH
Confidence 9999999887654
No 61
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=7.7e-20 Score=163.51 Aligned_cols=182 Identities=16% Similarity=0.119 Sum_probs=150.3
Q ss_pred Hhhhhh-hhhcHHHHHHHHHhHHhc---------CCCchhHhhhHHHHHhhcCCCCHH----------------------
Q psy4772 39 AIAYSQ-KCNLFSDELSYIEGLISH---------DVRNNSAWTQRYFVINHTTQFTPE---------------------- 86 (235)
Q Consensus 39 ~~~y~~-~~~~~~~Al~~~~~aL~~---------~P~~~~a~~~~g~~l~~~~~~~e~---------------------- 86 (235)
.+++.. ..|++++|+++|++|+++ +|....+|.++|+++..+|+++++
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~ 135 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES 135 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhh
Confidence 445553 358999999999999987 788889999999999999987531
Q ss_pred -----------------HHHHHHHHHHHHHHhCCCCCchhhHHHHHHHh---cccccHHHHHHHHHHHHcCCCChHHHHH
Q psy4772 87 -----------------VIQREIDYCRDKIQIAPKNESPWNYLRGAVVN---AGEKSERALALTADAITMNPANYTVWQY 146 (235)
Q Consensus 87 -----------------~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~---~~~~~~eAl~~~~~al~l~P~~~~aw~~ 146 (235)
.+++|+.+|.++++++|+++.++ ..+|.+.. ..++.++|++.++++++++|++..++..
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~-~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~ 214 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT-SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH-HHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 36788888888888888888888 46777744 3466788888888888888888888888
Q ss_pred HHHHHHHhhH---hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 147 RREILKALNK---DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 147 r~~~l~~l~~---~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
++.++..++. .+++|+.++++++..+|.+..+|.++|.++...|++++|+..+++|++++|++..+|+++|.++.
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 8877766532 36789999999999999999999999999999999999999999999999999999999988763
No 62
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.84 E-value=8.5e-20 Score=167.64 Aligned_cols=179 Identities=11% Similarity=0.017 Sum_probs=163.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++++.+|.+..+|..++.++...|+++ +|+..+.+++..+|.+..+| +.+|.++...|++++
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN-----KLYLISNDLVDRHPEKAVTW-LAVGIYYLCVNKISE 391 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHH-----HHHHHHHHHHHHCTTSHHHH-HHHHHHHHHTTCHHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHhhCcccHHHH-HHHHHHHHHhccHHH
Confidence 578899999999999999999999999999999888764 78999999999999999999 578999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..|+++++++|.+..+|+.++.++...| ++++|+..++++++.+|.+..+|+.++.++.+.|++++|++.+++++.+
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEG-EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999 5999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 206 DAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 206 dp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
+|.++.+|..++.++...|+..+|.-
T Consensus 471 ~~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 471 FQYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999988888776653
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.84 E-value=1.4e-19 Score=149.81 Aligned_cols=174 Identities=10% Similarity=0.041 Sum_probs=149.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+.+|+++++++|.++.+|..+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++
T Consensus 56 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~-~~la~~~~~~g~~~~ 129 (275)
T 1xnf_A 56 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD-----AAYEAFDSVLELDPTYNYAH-LNRGIALYYGGRDKL 129 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCTHHH-HHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH-----HHHHHHHHHHhcCccccHHH-HHHHHHHHHhccHHH
Confidence 589999999999999999999999999999999999874 79999999999999999999 689999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC------------------------------
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN------------------------------ 175 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n------------------------------ 175 (235)
|+..++++++++|++..+....+.+ ...| ++++|+.++++++...|.+
T Consensus 130 A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 207 (275)
T 1xnf_A 130 AQDDLLAFYQDDPNDPFRSLWLYLA-EQKL-DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDN 207 (275)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH-HHHH-CHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHH-HHhc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccc
Confidence 9999999999999999877766655 4456 4888888888888877765
Q ss_pred -------hHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 176 -------YQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 176 -------~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
..+|..+|.++...|++++|+..+++++.++|.+...+ +.++..+|+..++.
T Consensus 208 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 208 TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQ 266 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC-
T ss_pred ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhH
Confidence 57888889999999999999999999999999886554 55555566555443
No 64
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.84 E-value=6e-20 Score=147.14 Aligned_cols=163 Identities=14% Similarity=0.120 Sum_probs=153.7
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
.+|.++.+|+.+|.++...|+++ +|+..+.++++++|.++.+| +.+|.++...|++++|+..+++++.++|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 76 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYR-----QATASIEDALKSDPKNELAW-LVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCcccHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHhCccchHHH-HHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 57889999999999999999874 79999999999999999999 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-hHhHHHHHHHHHHHHH--hCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 142 TVWQYRREILKAL-NKDLHQELKYIGEKIK--ENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218 (235)
Q Consensus 142 ~aw~~r~~~l~~l-~~~~eeal~~~~~al~--~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~ 218 (235)
.+|..++.++..+ | ++++|+.+++++++ .+|.+..+|+.+|.++...|++++|+..+++++..+|.+..+|..++.
T Consensus 77 ~~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 155 (225)
T 2vq2_A 77 EINNNYGWFLCGRLN-RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELAR 155 (225)
T ss_dssp HHHHHHHHHHHTTTC-CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 9999999999999 9 59999999999999 778889999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcccccc
Q psy4772 219 VINLLDDDDRGVL 231 (235)
Q Consensus 219 ~l~~l~~~~~~~~ 231 (235)
++..+|+..++.-
T Consensus 156 ~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 156 TKMLAGQLGDADY 168 (225)
T ss_dssp HHHHHTCHHHHHH
T ss_pred HHHHcCCHHHHHH
Confidence 9999998877654
No 65
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.8e-20 Score=166.06 Aligned_cols=161 Identities=9% Similarity=0.035 Sum_probs=146.8
Q ss_pred CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH
Q psy4772 63 DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYT 142 (235)
Q Consensus 63 ~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~ 142 (235)
+|.++.+|+.+|.++...|+++ +|+..+.+++..+|. ..+| +.+|.++...|++++|+..+++++.++|.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~l~~~~~-~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 305 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPL-----GAHEDIKKAIELFPR-VNSY-IYMALIMADRNDSTEYYNYFDKALKLDSNNSS 305 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHH-----HHHHHHHHHHHHCCC-HHHH-HHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTH
T ss_pred ChHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhhCcc-HHHH-HHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHH
Confidence 4788999999999999999874 799999999999999 8888 57899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 143 VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 143 aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
+|..++.++..+| ++++|+..++++++.+|.+..+|..+|.++...|++++|+..+++++..+|.+..+|.++|.++..
T Consensus 306 ~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 306 VYYHRGQMNFILQ-NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHHHTT-CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 9999999999999 489999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCcccccc
Q psy4772 223 LDDDDRGVL 231 (235)
Q Consensus 223 l~~~~~~~~ 231 (235)
+|+..++.-
T Consensus 385 ~~~~~~A~~ 393 (514)
T 2gw1_A 385 KNDFDKALK 393 (514)
T ss_dssp TTCHHHHHH
T ss_pred CCCHHHHHH
Confidence 888776654
No 66
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.83 E-value=2.7e-19 Score=146.68 Aligned_cols=159 Identities=9% Similarity=0.051 Sum_probs=145.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCch---hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc---hhhHHHHHHHhc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNN---SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES---PWNYLRGAVVNA 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~---~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~---aw~~~~g~il~~ 119 (235)
.|++++|+..|+++++..|.++ .+++.+|.++..+|+++ +|+..|+++++++|+++. ++ +.+|.++..
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~-----~A~~~~~~~l~~~P~~~~~~~a~-~~~g~~~~~ 90 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLP-----LAQAAIDRFIRLNPTHPNIDYVM-YMRGLTNMA 90 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCTTHHHHH-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHHCcCCCcHHHHH-HHHHHHHHh
Confidence 4899999999999999999875 79999999999999874 799999999999999987 77 678988875
Q ss_pred ------------------ccccHHHHHHHHHHHHcCCCChHHH-----------------HHHHHHHHHhhHhHHHHHHH
Q psy4772 120 ------------------GEKSERALALTADAITMNPANYTVW-----------------QYRREILKALNKDLHQELKY 164 (235)
Q Consensus 120 ------------------~~~~~eAl~~~~~al~l~P~~~~aw-----------------~~r~~~l~~l~~~~eeal~~ 164 (235)
.|++++|+..|+++++.+|++..++ ..+|.++...| ++++|+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~ 169 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG-AWVAVVNR 169 (225)
T ss_dssp HHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHH
T ss_pred hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHHHHHHH
Confidence 5789999999999999999999887 56788888898 59999999
Q ss_pred HHHHHHhCCCCh---HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 165 IGEKIKENSKNY---QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 165 ~~~al~~~P~n~---~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
++++++.+|+++ .+++.+|.++..+|++++|++.+++++...|++..
T Consensus 170 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 170 VEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 999999999987 68999999999999999999999999999998764
No 67
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.83 E-value=5.5e-20 Score=153.23 Aligned_cols=159 Identities=8% Similarity=-0.052 Sum_probs=144.3
Q ss_pred HHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC---CchhhHHHHHHHhcccccHHHHHHHHHHHH
Q psy4772 59 LISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN---ESPWNYLRGAVVNAGEKSERALALTADAIT 135 (235)
Q Consensus 59 aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~---~~aw~~~~g~il~~~~~~~eAl~~~~~al~ 135 (235)
...++|.++.+++.+|.++...|+++ +|+..|.+++..+|.+ +.+| +.+|.++...|++++|+..|++++.
T Consensus 7 ~~~~~~~~~~~~~~~a~~~~~~g~~~-----~A~~~~~~~l~~~p~~~~~~~a~-~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 7 SGRLRHSSPQEAFERAMEFYNQGKYD-----RAIEYFKAVFTYGRTHEWAADAQ-FYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp ----CCSSHHHHHHHHHHHHHTTCHH-----HHHHHHHHHGGGCSCSTTHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHhCCCCcchHHHH-HHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 35678999999999999999999875 7999999999999999 7889 7899999999999999999999999
Q ss_pred cCCCC---hHHHHHHHHHHHH--------hhHhHHHHHHHHHHHHHhCCCChHHh-----------------HHHHHHHH
Q psy4772 136 MNPAN---YTVWQYRREILKA--------LNKDLHQELKYIGEKIKENSKNYQVW-----------------RHRQIIVE 187 (235)
Q Consensus 136 l~P~~---~~aw~~r~~~l~~--------l~~~~eeal~~~~~al~~~P~n~~aw-----------------~~r~~~l~ 187 (235)
++|++ ..+++.+|.++.. +|+ +++|+..++++++.+|++..++ +.+|.++.
T Consensus 81 ~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 81 IYQIDPRVPQAEYERAMCYYKLSPPYELDQTD-TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE 159 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHH-HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCchhHHHHHHHHHHHHHhcccccccchh-HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98855 6789999999999 894 9999999999999999998887 88899999
Q ss_pred HcCCchHHHHHHHHHHHhCCC---ChHHhHHHHHHHhhcC
Q psy4772 188 WMGEPDEELALTAAILAQDAK---NYHAWQHRQWVINLLD 224 (235)
Q Consensus 188 ~l~~~~~Al~~~~~ai~ldp~---n~~aw~~r~~~l~~l~ 224 (235)
..|++++|+..|++++..+|+ ...+++.+|.++..+|
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA 199 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence 999999999999999999999 5569999999997663
No 68
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.83 E-value=1.3e-20 Score=147.13 Aligned_cols=121 Identities=10% Similarity=-0.051 Sum_probs=75.6
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERAL 127 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl 127 (235)
++-.+-..++++|+++|+++.+|+.+|.++..+|+++ +|+..|.+++.++|.++.+| +.+|.++..+|++++|+
T Consensus 17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~-----eA~~~~~~al~~~P~~~~~~-~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIE-----EAEVFFRFLCIYDFYNVDYI-MGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHH
T ss_pred HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHccHHHHH
Confidence 3344445556666666666666666666666666553 56666666666666666666 45666666666666666
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 128 ALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 128 ~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
.+|+++++++|+++.+|+++|.++..+| ++++|+.+|++++++.|+.
T Consensus 91 ~~~~~al~l~P~~~~~~~~lg~~~~~lg-~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 91 DLYAVAFALGKNDYTPVFHTGQCQLRLK-APLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCH
Confidence 6666666666666666666666666666 3666666666666666654
No 69
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.83 E-value=9.9e-21 Score=147.76 Aligned_cols=116 Identities=9% Similarity=-0.034 Sum_probs=111.9
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 93 ~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
..+.+++.++|+++.+| +.+|.++...|++++|+..|++++.++|.++.+|+++|.++..+| ++++|+.+|+++++++
T Consensus 23 ~~l~~al~l~p~~~~~~-~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g-~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDI-YSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE-QFQQAADLYAVAFALG 100 (151)
T ss_dssp CCTGGGCCSCHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS
T ss_pred CCHHHHhCCCHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-cHHHHHHHHHHHHhhC
Confidence 45778999999999999 799999999999999999999999999999999999999999999 5999999999999999
Q ss_pred CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCCh
Q psy4772 173 SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 173 P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~ 210 (235)
|+++.+|+++|.++..+|++++|+.+|++++.+.|+..
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999875
No 70
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.82 E-value=1.7e-20 Score=148.02 Aligned_cols=152 Identities=13% Similarity=0.010 Sum_probs=125.9
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHh-ccccc
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVN-AGEKS 123 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~-~~~~~ 123 (235)
..|++++|+..|+++++.+|+++.+|+.+|.++..+|+++ +|+..+++++.++| ++..+ ...+.+.. ..+..
T Consensus 18 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~-----~A~~~~~~a~~~~p-~~~~~-~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFE-----LAQELLATIPLEYQ-DNSYK-SLIAKLELHQQAAE 90 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHH-----HHHHHHTTCCGGGC-CHHHH-HHHHHHHHHHHHTS
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHH-----HHHHHHHHhhhccC-ChHHH-HHHHHHHHHhhccc
Confidence 3578899999999999999999999999999999988864 78899999999999 76655 34444422 22344
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC--hHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN--YQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n--~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
.+|+..++++++++|+++.+++.+|.++..+| ++++|+..++++++++|.. ..+|..++.++..+|+.++|+..|++
T Consensus 91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 91 SPELKRLEQELAANPDNFELACELAVQYNQVG-RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 56789999999999999999999999999998 4899999999999999876 56899999999999999999999998
Q ss_pred HHH
Q psy4772 202 ILA 204 (235)
Q Consensus 202 ai~ 204 (235)
+|.
T Consensus 170 al~ 172 (176)
T 2r5s_A 170 QLY 172 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 71
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.82 E-value=4.4e-20 Score=175.39 Aligned_cols=163 Identities=12% Similarity=-0.056 Sum_probs=151.6
Q ss_pred HhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHH--------HhCCCCCchhhHHHHHHHhcccccHHHHHHHH
Q psy4772 60 ISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKI--------QIAPKNESPWNYLRGAVVNAGEKSERALALTA 131 (235)
Q Consensus 60 L~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal--------~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~ 131 (235)
..++|+++.+++.+| ...|++ ++|++.+.+++ +.+|++..+| +.+|.++...|++++|+..++
T Consensus 387 p~~~p~~~~a~~~~a---~~~~~~-----~~A~~~~~~al~~~~~~~~~~~p~~~~~~-~~~a~~~~~~g~~~~A~~~~~ 457 (681)
T 2pzi_A 387 PLVDPTDVAASVLQA---TVLSQP-----VQTLDSLRAARHGALDADGVDFSESVELP-LMEVRALLDLGDVAKATRKLD 457 (681)
T ss_dssp BCCCTTSTTHHHHHH---TTTCCH-----HHHHHHHHHHHTC-------CCTTCSHHH-HHHHHHHHHHTCHHHHHHHHH
T ss_pred ccCCCCCcchHHhhc---ccccCH-----HHHHHHHHHhhhhcccccccccccchhHH-HHHHHHHHhcCCHHHHHHHHH
Confidence 367999999999888 555554 58999999999 9999999999 689999999999999999999
Q ss_pred HHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 132 DAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 132 ~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
++++++|++..+|+++|.++..+| ++++|+..|+++++++|+++.+|+++|.++..+|++++ +..|++|++++|++..
T Consensus 458 ~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~ 535 (681)
T 2pzi_A 458 DLAERVGWRWRLVWYRAVAELLTG-DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVIS 535 (681)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHH
T ss_pred HHhccCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHH
Confidence 999999999999999999999999 59999999999999999999999999999999999999 9999999999999999
Q ss_pred HhHHHHHHHhhcCCcccccccc
Q psy4772 212 AWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 212 aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
+|+++|.++..+|+..+|.-.|
T Consensus 536 a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999988776544
No 72
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.82 E-value=1.6e-20 Score=152.50 Aligned_cols=160 Identities=9% Similarity=0.027 Sum_probs=138.4
Q ss_pred CchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHH----------------HHHHHhcccccHHHHH
Q psy4772 65 RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYL----------------RGAVVNAGEKSERALA 128 (235)
Q Consensus 65 ~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~----------------~g~il~~~~~~~eAl~ 128 (235)
..++.+..+|.++...|+++ +|+..|.+++.++|+++.+| +. +|.++...|++++|+.
T Consensus 2 ~~~~~~~~~g~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 2 QSVDEMLQKVSAAIEAGQNG-----QAVSYFRQTIALNIDRTEMY-YWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp -CHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCHHHHHHH-HHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHhCCCChHHH-HHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 35778899999999999875 79999999999999999999 68 9999999999999999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC--chHHHHHHHHHHHhC
Q psy4772 129 LTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE--PDEELALTAAILAQD 206 (235)
Q Consensus 129 ~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~--~~~Al~~~~~ai~ld 206 (235)
.|+++++++|+++.+|+.+|.++..+| ++++|+.+|+++++++|+++.+|+++|.++...|. ...+...+++++..+
T Consensus 76 ~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (208)
T 3urz_A 76 FYKELLQKAPNNVDCLEACAEMQVCRG-QEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154 (208)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999 59999999999999999999999999999977664 456678888887554
Q ss_pred CCChHHhHHHHHHHhhcCCccccccc
Q psy4772 207 AKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 207 p~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
|. ..+|+++|.++..+|+..+|.-.
T Consensus 155 ~~-~~a~~~~g~~~~~~~~~~~A~~~ 179 (208)
T 3urz_A 155 KM-QYARYRDGLSKLFTTRYEKARNS 179 (208)
T ss_dssp HH-HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHccCHHHHHHH
Confidence 43 34788899988878877666543
No 73
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=161.49 Aligned_cols=180 Identities=12% Similarity=0.092 Sum_probs=112.6
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc----ccc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA----GEK 122 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~----~~~ 122 (235)
++|++|+.+|++||+++|++++++..+|.+...++.+.+ .++|++.+.++++++|+++.++ ..+|.++.. .+.
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~--~~~al~~~~~al~l~p~~~~~~-~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP--SQNAIDPLRQAIRLNPDNQYLK-VLLALKLHKMREEGEE 228 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC--CCCTHHHHHHHHHHCSSCHHHH-HHHHHHHHHCC-----
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH--HHHHHHHHHHHhhcCCcchHHH-HHHHHHHHHHHhhhhH
Confidence 578999999999999999999999999998765543211 1146666666666666666666 345544433 244
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc-------------
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM------------- 189 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l------------- 189 (235)
+++|+.++++++.++|.+..+++++|.++...| .+++|+.+++++++.+|++..+|+++|.++...
T Consensus 229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~ 307 (472)
T 4g1t_A 229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD-EPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMY 307 (472)
T ss_dssp -CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 556666666666666666666666666666666 366666666666666666666666666554322
Q ss_pred ------CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 190 ------GEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 190 ------~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+.+++|+..+++++.++|.+..+|.++|.++..+|+..+|+
T Consensus 308 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 308 GKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHH
Confidence 11345555566666666666666666666655555554443
No 74
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.82 E-value=1.1e-21 Score=171.23 Aligned_cols=174 Identities=10% Similarity=-0.035 Sum_probs=149.2
Q ss_pred hcHHHHHHHHHh----HHhcCCCchhHhhhHHHHHh------------hcCCCCHHHHHHHHHHHHHHHHhCCCCCchhh
Q psy4772 47 NLFSDELSYIEG----LISHDVRNNSAWTQRYFVIN------------HTTQFTPEVIQREIDYCRDKIQIAPKNESPWN 110 (235)
Q Consensus 47 ~~~~~Al~~~~~----aL~~~P~~~~a~~~~g~~l~------------~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~ 110 (235)
..+++|+..+.. +|.+.|+. +|..+|.... .++++. +|+..+.+++..+|.+..+|
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~-----~A~~~~~~a~~~~p~~a~~~- 150 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFE-----KAKESWEMNSEEKLEQSTIV- 150 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEE-----CCCCGGGCCHHHHHHHHHHH-
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecc-----cccchhcCCHHHHHHHHHHH-
Confidence 467999999999 99999987 7777776543 233333 57778888888899999999
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCC---------------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPAN---------------YTVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~---------------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
+.+|.++...|++++|+.+|++++.++|.+ ..+|+++|.++..+| ++++|+.+|+++++++|.+
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-~~~~A~~~~~~al~~~p~~ 229 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ-AFSAAIESCNKALELDSNN 229 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCc
Confidence 578999999999999999999999999998 589999999999999 4899999999999999999
Q ss_pred hHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 176 YQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 176 ~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
+.+|+.+|.++..+|++++|+.+|++|+.++|++..+|..++.++..+|+..++
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887776655
No 75
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=7.5e-19 Score=150.41 Aligned_cols=173 Identities=10% Similarity=0.034 Sum_probs=147.3
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHH--HHHhcccc
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRG--AVVNAGEK 122 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g--~il~~~~~ 122 (235)
..|++++|+..+++ |.+++++..+|.++..+|+++ +|+..+.++++++|++.... ...+ .++...|+
T Consensus 113 ~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~-----~A~~~l~~~~~~~p~~~~~~-l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 113 YDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLD-----LARKELKKMQDQDEDATLTQ-LATAWVSLAAGGEK 181 (291)
T ss_dssp HTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHCTTH
T ss_pred HCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhhCcCcHHHH-HHHHHHHHHhCchH
Confidence 35899999999998 999999999999999999875 79999999999999976332 2222 33445689
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchH-HHHHHHH
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDE-ELALTAA 201 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~-Al~~~~~ 201 (235)
+++|+.+|+++++.+|.++.+|+.+|.++..+| ++++|...++++++++|+++.+|+++|.++..+|+..+ +..++++
T Consensus 182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG-RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260 (291)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999 49999999999999999999999999999999999976 5689999
Q ss_pred HHHhCCCChHHhHHHHHHHhhcCCcccccccc
Q psy4772 202 ILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233 (235)
Q Consensus 202 ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~~ 233 (235)
+++++|+++.+..+ ....+.++++...|
T Consensus 261 ~~~~~P~~~~~~d~----~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 261 LKDAHRSHPFIKEY----RAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHCTTCHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHH----HHHHHHHHHHHHHc
Confidence 99999999987543 23344444444443
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.82 E-value=2.2e-19 Score=139.16 Aligned_cols=159 Identities=8% Similarity=0.069 Sum_probs=150.3
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
...+|..+|.++...|+++ +|+..+.+++..+|.+..+| +.+|.++...|++++|+..+++++.++|.+..+|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 80 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYS-----QAVMLLEQVYDADAFDVDVA-LHLGIAYVKTGAVDRGTELLERSLADAPDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHH-----HHHHHHTTTCCTTSCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHhCccChHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4678899999999999874 79999999999999999999 68999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
.++.++...| ++++|+.+++++++.+|.+..+|..+|.++...|++++|+..+++++..+|.+..+|..++.++..+|+
T Consensus 81 ~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 81 VLGLTYVQVQ-KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC
Confidence 9999999999 599999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccc
Q psy4772 226 DDRGVL 231 (235)
Q Consensus 226 ~~~~~~ 231 (235)
..++.-
T Consensus 160 ~~~A~~ 165 (186)
T 3as5_A 160 HEEALP 165 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
No 77
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.81 E-value=2.3e-19 Score=152.98 Aligned_cols=164 Identities=16% Similarity=0.108 Sum_probs=153.0
Q ss_pred CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH
Q psy4772 63 DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYT 142 (235)
Q Consensus 63 ~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~ 142 (235)
-|++..+++.+|..+...|+++ +|+..|.++++++|+++.++ +.+|.++...|++++|+..+++++..+|+...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~-----~A~~~~~~al~~~P~~~~a~-~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 186 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYT-----DALPLLXDAWQLSNQNGEIG-LLLAETLIALNRSEDAEAVLXTIPLQDQDTRY 186 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHTTSCHHHH-HHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHH-----HHHHHHHHHHHhCCcchhHH-HHHHHHHHHCCCHHHHHHHHHhCchhhcchHH
Confidence 4999999999999999999875 79999999999999999999 68999999999999999999999999998887
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC--hHHhHHHHHHH
Q psy4772 143 VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN--YHAWQHRQWVI 220 (235)
Q Consensus 143 aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n--~~aw~~r~~~l 220 (235)
.+...+..+...++ .++|+..++++++.+|+++.+++.+|.++...|++++|+..+.+++.++|++ ..++.+++.++
T Consensus 187 ~~~~~~~~l~~~~~-~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 187 QGLVAQIELLXQAA-DTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHHT-SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc-cCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 77777877888884 7889999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhcCCcccccccc
Q psy4772 221 NLLDDDDRGVLEY 233 (235)
Q Consensus 221 ~~l~~~~~~~~~~ 233 (235)
..+|+.+++...|
T Consensus 266 ~~~g~~~~a~~~~ 278 (287)
T 3qou_A 266 AALGTGDALASXY 278 (287)
T ss_dssp HHHCTTCHHHHHH
T ss_pred HHcCCCCcHHHHH
Confidence 9999988876654
No 78
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.81 E-value=1.4e-19 Score=142.79 Aligned_cols=164 Identities=10% Similarity=0.058 Sum_probs=142.3
Q ss_pred CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH
Q psy4772 63 DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYT 142 (235)
Q Consensus 63 ~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~ 142 (235)
||...+.+..+|.++...|+++ +|+..|.++++++|+++.+| +.+|.++...|++++|+..+++++.++| ++.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~-----~A~~~~~~al~~~P~~~~a~-~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~ 74 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHA-----QALNVIQTLSDELQSRGDVK-LAKADCLLETKQFELAQELLATIPLEYQ-DNS 74 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHH-----HHHHHHHTSCHHHHTSHHHH-HHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHCCCcHHHH-HHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH
Confidence 6777888999999999999874 79999999999999999999 6899999999999999999999999999 887
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC--hHHhHHHHHHH
Q psy4772 143 VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN--YHAWQHRQWVI 220 (235)
Q Consensus 143 aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n--~~aw~~r~~~l 220 (235)
.+..++.+....+....+|+..++++++++|+++.+|+.+|.++...|++++|+..+++++.++|.+ ..+|.+++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~ 154 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDIL 154 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHH
Confidence 7766665533221123457999999999999999999999999999999999999999999999986 56999999999
Q ss_pred hhcCCcccccccc
Q psy4772 221 NLLDDDDRGVLEY 233 (235)
Q Consensus 221 ~~l~~~~~~~~~~ 233 (235)
..+|+.+++...|
T Consensus 155 ~~~g~~~~A~~~y 167 (176)
T 2r5s_A 155 SALGQGNAIASKY 167 (176)
T ss_dssp HHHCSSCHHHHHH
T ss_pred HHhCCCCcHHHHH
Confidence 9999998887655
No 79
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.81 E-value=2.4e-19 Score=138.62 Aligned_cols=117 Identities=9% Similarity=-0.122 Sum_probs=63.9
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 95 CRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 95 ~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
|.+++.++|++..+| +.+|.++...|++++|+..|++++.++|.++.+|+.+|.++..+| ++++|+.+|+++++++|+
T Consensus 10 ~~~al~~~p~~~~~~-~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 10 IAMLNEISSDTLEQL-YSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG-QYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp HHHHTTCCHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTT
T ss_pred HHHHHcCCHhhHHHH-HHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCC
Confidence 445555555555555 345555555555555555555555555555555555555555555 255555555555555555
Q ss_pred ChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHh
Q psy4772 175 NYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAW 213 (235)
Q Consensus 175 n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw 213 (235)
++.+|+++|.++..+|++++|+.+|++++.++|.++...
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 555555555555555555555555555555555554443
No 80
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.80 E-value=1.5e-18 Score=142.22 Aligned_cols=159 Identities=9% Similarity=-0.083 Sum_probs=144.7
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSERALALTADAITMNPANYT 142 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~ 142 (235)
.+.+++.+|.++...|+++ +|+..|++++...|.++ .++ +.+|.++...|++++|+..|+++++++|++..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~-----~A~~~~~~~~~~~p~~~~~~~a~-~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 76 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWR-----QAITQLEALDNRYPFGPYSQQVQ-LDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 76 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHCTTSTTHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCChHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 5678999999999999875 79999999999999986 578 68999999999999999999999999999986
Q ss_pred ---HHHHHHHHHHHh------------------hHhHHHHHHHHHHHHHhCCCChHHh-----------------HHHHH
Q psy4772 143 ---VWQYRREILKAL------------------NKDLHQELKYIGEKIKENSKNYQVW-----------------RHRQI 184 (235)
Q Consensus 143 ---aw~~r~~~l~~l------------------~~~~eeal~~~~~al~~~P~n~~aw-----------------~~r~~ 184 (235)
+++.+|.++..+ | ++++|+..++++++.+|++..++ ..+|.
T Consensus 77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~ 155 (225)
T 2yhc_A 77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQ-QARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAE 155 (225)
T ss_dssp HHHHHHHHHHHHHHHHC--------------CCH-HHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcH-HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999873 5 48999999999999999999877 57888
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCCh---HHhHHHHHHHhhcCCcccccc
Q psy4772 185 IVEWMGEPDEELALTAAILAQDAKNY---HAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 185 ~l~~l~~~~~Al~~~~~ai~ldp~n~---~aw~~r~~~l~~l~~~~~~~~ 231 (235)
++...|++.+|+..++++++..|+++ .+++.+|.++..+|+..++.-
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999999999987 679999999999999877653
No 81
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.80 E-value=8.8e-20 Score=141.05 Aligned_cols=126 Identities=9% Similarity=-0.093 Sum_probs=116.5
Q ss_pred HHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHH
Q psy4772 53 LSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTAD 132 (235)
Q Consensus 53 l~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~ 132 (235)
-..|+++|+++|+++.+++.+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++|+.+|++
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYE-----DAHXVFQALCVLDHYDSRFF-LGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChH-----HHHHHHHHHHHcCcccHHHH-HHHHHHHHHHhhHHHHHHHHHH
Confidence 35688999999999999999999999999875 79999999999999999999 6899999999999999999999
Q ss_pred HHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 133 AITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 133 al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
++.++|+++.+|+++|.++..+| ++++|+.+++++++++|.++.....+..+
T Consensus 81 al~l~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 132 (148)
T 2vgx_A 81 GAVMDIXEPRFPFHAAECLLQXG-ELAEAESGLFLAQELIANXPEFXELSTRV 132 (148)
T ss_dssp HHHHSTTCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHhcCCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence 99999999999999999999999 59999999999999999998765544433
No 82
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.79 E-value=3.1e-20 Score=162.14 Aligned_cols=154 Identities=10% Similarity=0.022 Sum_probs=143.4
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---------------chh
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---------------SPW 109 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---------------~aw 109 (235)
.+..+++|+..+++++..+|.++.+|..+|.++..+|+++ +|+..|.+++.++|.+. .+|
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~-----~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYK-----QALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999875 79999999999999994 888
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l 189 (235)
+++|.++..+|++++|+.+|+++|+++|.++.+|+.+|.++..+| ++++|+.+++++++++|.+..+|..++.++..+
T Consensus 200 -~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 200 -LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN-DFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999 599999999999999999999999999999999
Q ss_pred CCchHH-HHHHHHHHHh
Q psy4772 190 GEPDEE-LALTAAILAQ 205 (235)
Q Consensus 190 ~~~~~A-l~~~~~ai~l 205 (235)
|++++| ...|++++..
T Consensus 278 ~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 278 RRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999888 4577777653
No 83
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.79 E-value=2.3e-19 Score=136.86 Aligned_cols=120 Identities=10% Similarity=-0.112 Sum_probs=60.6
Q ss_pred HHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHH
Q psy4772 55 YIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAI 134 (235)
Q Consensus 55 ~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al 134 (235)
.|+++++++|++..+++.+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++|+.+|++++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWD-----DAQKIFQALCMLDHYDARYF-LGLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHH-----HHHHHHHHHHHhCCccHHHH-HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445555555555555555555555555442 45555555555555555555 345555555555555555555555
Q ss_pred HcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHH
Q psy4772 135 TMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181 (235)
Q Consensus 135 ~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~ 181 (235)
.++|.++.+|+++|.++..+| ++++|+.+++++++++|.++..+..
T Consensus 80 ~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 80 LMDINEPRFPFHAAECHLQLG-DLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHCTTCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred hcCCCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCcchHHH
Confidence 555555555555555555555 2555555555555555555444333
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.78 E-value=3.9e-19 Score=151.56 Aligned_cols=163 Identities=7% Similarity=-0.004 Sum_probs=138.5
Q ss_pred hhcHHHHHHHHHhHHhcCCC------chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC------chhhHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVR------NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE------SPWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~------~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~------~aw~~~~ 113 (235)
.|++++|+.+|++++.+.++ .+.+|.++|.++..+|+++ +|+..|.+++.+.|... .+| ..+
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~-----~A~~~~~~Al~l~~~~g~~~~~a~~~-~~l 123 (292)
T 1qqe_A 50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV-----NAVDSLENAIQIFTHRGQFRRGANFK-FEL 123 (292)
T ss_dssp TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHcCCHHHHHHHH-HHH
Confidence 47899999999999999643 3789999999999999875 79999999999998763 477 479
Q ss_pred HHHHhcc-cccHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH-------Hh
Q psy4772 114 GAVVNAG-EKSERALALTADAITMNPAN------YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ-------VW 179 (235)
Q Consensus 114 g~il~~~-~~~~eAl~~~~~al~l~P~~------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~-------aw 179 (235)
|.++... |++++|+.+|++++++.|.. ..++.++|.++..+| ++++|+.++++++++.|.+.. +|
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-QYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999995 99999999999999999876 568999999999999 599999999999999998764 67
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 180 RHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 180 ~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
+.+|.++..+|++++|+.++++++.++|++..+...
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 899999999999999999999999999999876544
No 85
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.78 E-value=3.7e-19 Score=135.71 Aligned_cols=129 Identities=10% Similarity=-0.091 Sum_probs=118.3
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 93 ~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
..+.+++.++|++..++ +.+|.++...|++++|+..|++++.++|.++.+|+.+|.++..+| ++++|+.+++++++++
T Consensus 5 ~~l~~al~~~p~~~~~~-~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQL-YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG-LYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHH-HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcC
Confidence 56888999999999999 789999999999999999999999999999999999999999999 5999999999999999
Q ss_pred CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 173 SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 173 P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
|.++.+|+++|.++..+|++++|+.++++++.++|.++..+..+..+...+
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887776665443
No 86
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.78 E-value=1.3e-18 Score=148.32 Aligned_cols=152 Identities=9% Similarity=-0.026 Sum_probs=142.2
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++|+.+|+++.+++.+|.++..+|+++ +|+..+.+++..+|+....+ ...+..+...++.++
T Consensus 130 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~-----~A~~~l~~~~~~~p~~~~~~-~~~~~~l~~~~~~~~ 203 (287)
T 3qou_A 130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSE-----DAEAVLXTIPLQDQDTRYQG-LVAQIELLXQAADTP 203 (287)
T ss_dssp TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH-----HHHHHHTTSCGGGCSHHHHH-HHHHHHHHHHHTSCH
T ss_pred CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHH-----HHHHHHHhCchhhcchHHHH-HHHHHHHHhhcccCc
Confidence 488999999999999999999999999999999999875 79999999999999666555 566677888899999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC--hHHhHHHHHHHHHcCCchHHHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN--YQVWRHRQIIVEWMGEPDEELALTAAIL 203 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n--~~aw~~r~~~l~~l~~~~~Al~~~~~ai 203 (235)
|+..+++++.++|+++.+++.+|.++...| ++++|+..++++++++|.+ ..++..++.++..+|+.++|+..|++++
T Consensus 204 a~~~l~~al~~~P~~~~~~~~la~~l~~~g-~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 204 EIQQLQQQVAENPEDAALATQLALQLHQVG-RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999999999999999999 4999999999999999999 8999999999999999999999999998
Q ss_pred H
Q psy4772 204 A 204 (235)
Q Consensus 204 ~ 204 (235)
.
T Consensus 283 ~ 283 (287)
T 3qou_A 283 Y 283 (287)
T ss_dssp H
T ss_pred H
Confidence 6
No 87
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.77 E-value=1.4e-20 Score=171.01 Aligned_cols=172 Identities=10% Similarity=0.029 Sum_probs=138.5
Q ss_pred cHHHHHHHHHh----HHhcCCCchhHhhhHHHHHh------------hcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhH
Q psy4772 48 LFSDELSYIEG----LISHDVRNNSAWTQRYFVIN------------HTTQFTPEVIQREIDYCRDKIQIAPKNESPWNY 111 (235)
Q Consensus 48 ~~~~Al~~~~~----aL~~~P~~~~a~~~~g~~l~------------~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~ 111 (235)
.++.|+..+.+ +|.++|.. +|.++|.... .++++ ++|+..+.+++..+|+...+| +
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~-----~~A~~~~~~~~~~~~~~a~~~-~ 272 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSF-----EKAKESWEMDTKEKLEQAAIV-K 272 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEE-----ECCCCGGGSCHHHHHHHHHHH-H
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhc-----ccCcchhhcCHHHHHHHHHHH-H
Confidence 56888888888 88888875 7777775432 22233 257777888888888888888 5
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCC---------------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPAN---------------YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~---------------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
.+|.++...|++++|+.+|++++.++|.+ ..+|+++|.++.+++ ++++|+.+|+++|+++|++.
T Consensus 273 ~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-~~~~A~~~~~~al~~~p~~~ 351 (457)
T 1kt0_A 273 EKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR-EYTKAVECCDKALGLDSANE 351 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccH
Confidence 78999999999999999999999999988 688999999999998 48999999999999999999
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccc
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDR 228 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~ 228 (235)
.+|+++|.++..+|++++|+.+|++|+.++|++..+|..++.++..+++..+
T Consensus 352 ~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888877766543
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.77 E-value=3.9e-19 Score=146.70 Aligned_cols=179 Identities=11% Similarity=0.048 Sum_probs=154.2
Q ss_pred hcHHHHHHHHHhHHhcC-CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh--------CCCCCchhhHHHHHHH
Q psy4772 47 NLFSDELSYIEGLISHD-VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI--------APKNESPWNYLRGAVV 117 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~-P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l--------~p~~~~aw~~~~g~il 117 (235)
..+++|+..+.+++..+ |..+.+|..+|.++...|+++ +|+..+.+++.+ +|....+| ..+|.++
T Consensus 22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~l~~~~ 95 (283)
T 3edt_B 22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK-----EAAHLLNDALAIREKTLGKDHPAVAATL-NNLAVLY 95 (283)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHTCTTCHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHH-----HHHHHHHHHHHHHHHHcCCcchHHHHHH-HHHHHHH
Confidence 34455555555555444 888999999999999999875 799999999988 46677788 5799999
Q ss_pred hcccccHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh--------CCCChHHhHH
Q psy4772 118 NAGEKSERALALTADAITM--------NPANYTVWQYRREILKALNKDLHQELKYIGEKIKE--------NSKNYQVWRH 181 (235)
Q Consensus 118 ~~~~~~~eAl~~~~~al~l--------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~--------~P~n~~aw~~ 181 (235)
...|++++|+..+.+++.+ +|....++.++|.++..+| ++++|+.++++++++ +|....++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 96 GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG-KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999999998 6888999999999999999 599999999999999 8888899999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHh-------------------------------------------------CCCChHH
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQ-------------------------------------------------DAKNYHA 212 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~l-------------------------------------------------dp~n~~a 212 (235)
+|.++...|++++|+.++++++.+ +|....+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999999986 3566678
Q ss_pred hHHHHHHHhhcCCccccccc
Q psy4772 213 WQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 213 w~~r~~~l~~l~~~~~~~~~ 232 (235)
+..+|.++..+|+..+|.-.
T Consensus 255 ~~~la~~~~~~g~~~~A~~~ 274 (283)
T 3edt_B 255 LRSLGALYRRQGKLEAAHTL 274 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887766543
No 89
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.7e-17 Score=152.05 Aligned_cols=179 Identities=7% Similarity=0.029 Sum_probs=158.2
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhh-------cCCCCHH--HHHHHHHHHHHHHH-hCCCCCchhhHHHHHHHhc
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINH-------TTQFTPE--VIQREIDYCRDKIQ-IAPKNESPWNYLRGAVVNA 119 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~-------~~~~~e~--~~~~Al~~~~kal~-l~p~~~~aw~~~~g~il~~ 119 (235)
..++..|+++|..+|.++.+|...|.++.. .|+++.+ ..++|+..|.++++ ++|++..+| +..|.++..
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~-~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY-FAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH-HHHHHHHHh
Confidence 478899999999999999999999999886 6776310 01369999999997 899999999 689999999
Q ss_pred ccccHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH-HHcCCchHHHH
Q psy4772 120 GEKSERALALTADAITMNPANY-TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV-EWMGEPDEELA 197 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l~P~~~-~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l-~~l~~~~~Al~ 197 (235)
.|++++|...|+++++++|.++ .+|...+.++.+.|. +++|+..|+++++..|.++..|...+.+. ...|++++|+.
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH
Confidence 9999999999999999999986 699999999999995 99999999999999999998888777764 46899999999
Q ss_pred HHHHHHHhCCCChHHhHHHHHHHhhcCCccccc
Q psy4772 198 LTAAILAQDAKNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 198 ~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
.|+++++.+|+++.+|...+.++..+|+.+++.
T Consensus 413 ~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 413 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHH
Confidence 999999999999999999999988888775543
No 90
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=5.4e-18 Score=125.87 Aligned_cols=115 Identities=12% Similarity=0.045 Sum_probs=88.0
Q ss_pred CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 106 ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 106 ~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
...| +.+|.++...|++++|+..|+++++++|.++.+|+++|.++..+| ++++|+.+++++++++|.++.+|+.+|.+
T Consensus 4 a~~~-~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEA-RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-SFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3455 467777777777777888888888878877778888888877777 47788888888888888888888888888
Q ss_pred HHHcCCchHHHHHHHHHHHhC------CCChHHhHHHHHHHhh
Q psy4772 186 VEWMGEPDEELALTAAILAQD------AKNYHAWQHRQWVINL 222 (235)
Q Consensus 186 l~~l~~~~~Al~~~~~ai~ld------p~n~~aw~~r~~~l~~ 222 (235)
+..+|++++|+..+++++.++ |.+..++..++.+...
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 888888888888888888877 7777777777766543
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.76 E-value=2.6e-17 Score=120.57 Aligned_cols=135 Identities=15% Similarity=0.339 Sum_probs=126.2
Q ss_pred hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHH
Q psy4772 68 SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYR 147 (235)
Q Consensus 68 ~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r 147 (235)
.+|+.+|.++...|+++ +|+..+.+++..+|.+..+| +.+|.++...|++++|+..+++++..+|.+..+|+.+
T Consensus 2 ~~~~~l~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 75 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYD-----EAIEYYQKALELDPRSAEAW-YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75 (136)
T ss_dssp HHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHH-----HHHHHHHHHHHcCCcchhHH-HHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 57889999999998764 79999999999999999999 5789999999999999999999999999999999999
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC
Q psy4772 148 REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 148 ~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n 209 (235)
+.++...| ++++|+..++++++.+|.+..+|..++.++...|++++|+..+++++.++|.+
T Consensus 76 ~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 76 GNAYYKQG-DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99999999 59999999999999999999999999999999999999999999999999864
No 92
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.75 E-value=7.8e-17 Score=134.57 Aligned_cols=159 Identities=9% Similarity=0.000 Sum_probs=88.8
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhh----cCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc---
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINH----TTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA--- 119 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~----~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~--- 119 (235)
+++++|+.+|+++++.+ ++.+++++|.++.. .+++ ++|+..|.+++..+ ++.++ +.+|.++..
T Consensus 56 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~-----~~A~~~~~~a~~~~--~~~a~-~~lg~~~~~~~~ 125 (273)
T 1ouv_A 56 KNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNT-----NKALQYYSKACDLK--YAEGC-ASLGGIYHDGKV 125 (273)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH-----HHHHHHHHHHHHTT--CHHHH-HHHHHHHHHCSS
T ss_pred CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCH-----HHHHHHHHHHHHcC--CccHH-HHHHHHHHcCCC
Confidence 44555555555555553 55555555555555 4433 34555555555553 45555 355555555
Q ss_pred -ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH----cC
Q psy4772 120 -GEKSERALALTADAITMNPANYTVWQYRREILKA----LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW----MG 190 (235)
Q Consensus 120 -~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~----l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~----l~ 190 (235)
.+++++|+.+++++++++ +..+++++|.++.. .+ ++++|+.+++++++. .++.+++.+|.++.. .+
T Consensus 126 ~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPK-DLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCC
T ss_pred cccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCc
Confidence 555566666666665554 45555555555555 44 356666666665554 245556666666655 56
Q ss_pred CchHHHHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 191 EPDEELALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 191 ~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
++++|+.+++++++.+| ..+++++|.++..
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 66666666666666544 5555566665544
No 93
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.75 E-value=1.1e-17 Score=129.98 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=70.6
Q ss_pred CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 106 ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 106 ~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
..+| +.+|.++...|++++|+.+|+++++++|.++.+|+++|.++..+| ++++|+.+++++++++|.+..+|+.+|.+
T Consensus 11 a~~~-~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKL-KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASG-QHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3444 355666666666666666666666666666666666666666666 36666666666666666666666666666
Q ss_pred HHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 186 VEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 186 l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+..+|++++|+.++++++.++|++..+|..++...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 66666666666666666666666666665555543
No 94
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=144.14 Aligned_cols=180 Identities=8% Similarity=0.018 Sum_probs=162.3
Q ss_pred hhcHHHHHHHHHhHHhc--------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh--------CCCCCchh
Q psy4772 46 CNLFSDELSYIEGLISH--------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI--------APKNESPW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l--------~p~~~~aw 109 (235)
.|++++|+.++++++++ .|..+.++..+|.++...|+++ +|+..+.+++.+ +|....++
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK-----DAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 47899999999999995 7888999999999999999875 789999999988 46667788
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcC--------CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh--------CC
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMN--------PANYTVWQYRREILKALNKDLHQELKYIGEKIKE--------NS 173 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~--------P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~--------~P 173 (235)
+.+|.++...|++++|+.++++++.+. |....++..+|.++..+| ++++|+.+++++++. +|
T Consensus 115 -~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 115 -NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG-KYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp -HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred -HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 579999999999999999999999884 778889999999999999 599999999999998 88
Q ss_pred CChHHhHHHHHHHHHcCCchHHHHHHHHHHHh------------------------------------------------
Q psy4772 174 KNYQVWRHRQIIVEWMGEPDEELALTAAILAQ------------------------------------------------ 205 (235)
Q Consensus 174 ~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l------------------------------------------------ 205 (235)
....+|+.+|.++...|++++|+..+++++.+
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 272 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC
Confidence 88899999999999999999999999999984
Q ss_pred -CCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 206 -DAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 206 -dp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
+|.+..+|.++|.++..+|+..+|.-.
T Consensus 273 ~~~~~~~~~~~la~~~~~~g~~~~A~~~ 300 (311)
T 3nf1_A 273 DSPTVTTTLKNLGALYRRQGKFEAAETL 300 (311)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 577888899999999888988777543
No 95
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.4e-17 Score=123.55 Aligned_cols=119 Identities=11% Similarity=0.048 Sum_probs=111.1
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHH
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTV 143 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~a 143 (235)
|..+..|..+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++..+|++++|+..++++++++|+++.+
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~-----~A~~~~~~al~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 74 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWP-----NAVKAYTEMIKRAPEDARGY-SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 74 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CchHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHhCCCChHHH-HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence 567889999999999999875 79999999999999999999 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhC------CCChHHhHHHHHHHHHc
Q psy4772 144 WQYRREILKALNKDLHQELKYIGEKIKEN------SKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~al~~~------P~n~~aw~~r~~~l~~l 189 (235)
|+.+|.++..+| ++++|+.+++++++++ |.+..++..++.+..++
T Consensus 75 ~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 75 YIRKATAQIAVK-EYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh-CHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999 5999999999999999 99999999988877653
No 96
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.74 E-value=1.6e-17 Score=153.51 Aligned_cols=142 Identities=8% Similarity=-0.044 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
+++|+..|.++++++|.+..+| +.+|.++...|++++|+..++++++++|++..+|+.+|.++..+| ++++|+.++++
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~ 82 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAW-LMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ-RHAEAAVLLQQ 82 (568)
T ss_dssp ----------------CCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 4589999999999999999999 689999999999999999999999999999999999999999999 59999999999
Q ss_pred HHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc---CCcccccc
Q psy4772 168 KIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL---DDDDRGVL 231 (235)
Q Consensus 168 al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l---~~~~~~~~ 231 (235)
+++++|++..+|+.+|.++..+|++++|++.++++++++|++..++.+++.++..+ |+..++.-
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888 77766554
No 97
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.74 E-value=7.1e-18 Score=132.47 Aligned_cols=109 Identities=11% Similarity=0.139 Sum_probs=86.4
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCC-------ChH-----HHHHHHHHHHHhhHhHHHHHHHHHHHHHh-------
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPA-------NYT-----VWQYRREILKALNKDLHQELKYIGEKIKE------- 171 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~-------~~~-----aw~~r~~~l~~l~~~~eeal~~~~~al~~------- 171 (235)
..+|.++...|++++|+.+|+++|+++|+ +.. +|+++|.++..+|+ +++|+.+++++|++
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr-~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhhhccccC
Confidence 35677777777777777777777777777 333 88888988888884 88888888888888
Q ss_pred CCCChHHh----HHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 172 NSKNYQVW----RHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 172 ~P~n~~aw----~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+|++..+| +++|.++..+|++++|+.+|++|++++|.+.....-+..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99998899 99999999999999999999999999988876655444443
No 98
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.73 E-value=1.6e-17 Score=141.48 Aligned_cols=164 Identities=10% Similarity=0.003 Sum_probs=143.3
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC------CchhhHHHHHHHhccc
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN------ESPWNYLRGAVVNAGE 121 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~------~~aw~~~~g~il~~~~ 121 (235)
++++|+..|+++ |.++..+|+++ +|+..|.+++.+.++. ..+| ..+|.++..+|
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~a~~~-~~lg~~~~~~g 91 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELN-----LAGDSFLKAADYQKKAGNEDEAGNTY-VEAYKCFKSGG 91 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHTT
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHH-----HHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHCC
Confidence 589999999888 66788889885 7999999999986543 4677 47999999999
Q ss_pred ccHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHhCCCC------hHHhHHHHHHHHH
Q psy4772 122 KSERALALTADAITMNPAN------YTVWQYRREILKAL-NKDLHQELKYIGEKIKENSKN------YQVWRHRQIIVEW 188 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~------~~aw~~r~~~l~~l-~~~~eeal~~~~~al~~~P~n------~~aw~~r~~~l~~ 188 (235)
++++|+.++++++.+.|.. ..+++++|.++... | ++++|+.+|+++++++|.+ ..++.++|.++..
T Consensus 92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg-~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH-DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999998865 56899999999995 9 5999999999999999865 5689999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCChH-------HhHHHHHHHhhcCCccccccc
Q psy4772 189 MGEPDEELALTAAILAQDAKNYH-------AWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 189 l~~~~~Al~~~~~ai~ldp~n~~-------aw~~r~~~l~~l~~~~~~~~~ 232 (235)
+|++++|+.++++++.+.|++.. +|.++|.++..+|+..+|.-.
T Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999998865 578889999999988776543
No 99
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.73 E-value=2.4e-16 Score=131.54 Aligned_cols=169 Identities=10% Similarity=0.076 Sum_probs=151.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhh----cCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc--
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINH----TTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA-- 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~----~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~-- 119 (235)
.+++++|+.+|+++++ |+++.+++++|.++.. .++++ +|+..|.+++.++ ++.++ +.+|.++..
T Consensus 19 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~-----~A~~~~~~a~~~~--~~~a~-~~lg~~~~~g~ 88 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLK-----KAASFYAKACDLN--YSNGC-HLLGNLYYSGQ 88 (273)
T ss_dssp TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHH-----HHHHHHHHHHHTT--CHHHH-HHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHH-----HHHHHHHHHHHCC--CHHHH-HHHHHHHhCCC
Confidence 4789999999999999 8899999999999999 88764 7999999999986 78899 689999999
Q ss_pred --ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH----c
Q psy4772 120 --GEKSERALALTADAITMNPANYTVWQYRREILKA----LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW----M 189 (235)
Q Consensus 120 --~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~----l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~----l 189 (235)
.+++++|+..++++++.+ ++.+++++|.++.. .+ ++++|+.+++++++.+ +..+++++|.++.. .
T Consensus 89 ~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 89 GVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTR-DFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCC-CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC
T ss_pred CcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCccc-CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCC
Confidence 999999999999999984 89999999999999 88 5999999999999976 78899999999998 9
Q ss_pred CCchHHHHHHHHHHHhCCCChHHhHHHHHHHhh----cCCcccccc
Q psy4772 190 GEPDEELALTAAILAQDAKNYHAWQHRQWVINL----LDDDDRGVL 231 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~----l~~~~~~~~ 231 (235)
+++++|+.+++++++. .++.+++++|.++.. .++..++.-
T Consensus 164 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~ 207 (273)
T 1ouv_A 164 KDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALA 207 (273)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 9999999999999988 468899999999977 777666543
No 100
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.73 E-value=6.1e-17 Score=129.84 Aligned_cols=141 Identities=9% Similarity=0.019 Sum_probs=118.2
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHH
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQY 146 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~ 146 (235)
...++++|.++...|+++ +|+..|.+++ +| ++.+| +.+|.++...|++++|+..+++++.++|.+..+|++
T Consensus 6 ~~~~~~~g~~~~~~~~~~-----~A~~~~~~a~--~~-~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 76 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWK-----GALDAFSAVQ--DP-HSRIC-FNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHHHTTCHH-----HHHHHHHTSS--SC-CHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHH-----HHHHHHHHHc--CC-ChHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 345778888888888764 6888888885 44 66788 578899999999999999999999999999999999
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhCCCCh----------------HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCCh
Q psy4772 147 RREILKALNKDLHQELKYIGEKIKENSKNY----------------QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 147 r~~~l~~l~~~~eeal~~~~~al~~~P~n~----------------~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~ 210 (235)
+|.++..+| ++++|+.++++++++.|.+. .+|+++|.++..+|++++|+..+++++.++|++.
T Consensus 77 lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 77 RGMLYYQTE-KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHcc-cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 999999988 48999999999999888877 8899999999999999999999999999999877
Q ss_pred HHhHHHH
Q psy4772 211 HAWQHRQ 217 (235)
Q Consensus 211 ~aw~~r~ 217 (235)
......+
T Consensus 156 ~~~~~~a 162 (213)
T 1hh8_A 156 HSKIDKA 162 (213)
T ss_dssp GGHHHHH
T ss_pred cchHHHH
Confidence 6655444
No 101
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.73 E-value=7e-19 Score=159.73 Aligned_cols=149 Identities=10% Similarity=0.025 Sum_probs=134.6
Q ss_pred hhhhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC---------------C
Q psy4772 42 YSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN---------------E 106 (235)
Q Consensus 42 y~~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~---------------~ 106 (235)
|...++.|++|+..+++++..+|.++.+|.++|.+++..|+|. +|+..|.++|+++|.+ .
T Consensus 243 y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~-----~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 317 (457)
T 1kt0_A 243 YEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYM-----QAVIQYGKIVSWLEMEYGLSEKESKASESFLL 317 (457)
T ss_dssp EEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred EEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 3334567789999999999999999999999999999999875 7999999999999999 4
Q ss_pred chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 107 ~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.+| +++|.++..+|++++|+.+|+++|+++|+++.+|+++|.++..++ ++++|+.+|+++++++|++..+|..++.++
T Consensus 318 ~~~-~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g-~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAF-LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN-EFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHH-HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888 689999999999999999999999999999999999999999999 599999999999999999999999999999
Q ss_pred HHcCCchHHHH
Q psy4772 187 EWMGEPDEELA 197 (235)
Q Consensus 187 ~~l~~~~~Al~ 197 (235)
..++++.++..
T Consensus 396 ~~~~~~~~a~~ 406 (457)
T 1kt0_A 396 KKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887663
No 102
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.73 E-value=3.1e-17 Score=128.55 Aligned_cols=125 Identities=11% Similarity=0.109 Sum_probs=81.1
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH-Hhccccc--
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAV-VNAGEKS-- 123 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~i-l~~~~~~-- 123 (235)
+++++|+..++++++.+|.++.+|+.+|.++...|+++ +|+..|.++++++|.++.+| +.+|.+ +...|++
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-----~A~~~~~~al~~~p~~~~~~-~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYS-----NSLLAYRQALQLRGENAELY-AALATVLYYQASQHMT 97 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHCSCHHHH-HHHHHHHHHHTTTCCC
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCCCHHHH-HHHHHHHHHhcCCcch
Confidence 55667777777777777777777777777766666653 56666666666666666666 456666 5556666
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQV 178 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~a 178 (235)
++|+..+++++.++|.+..+|+.+|.++..+| ++++|+..++++++++|.+...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQA-NYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhCCCCccH
Confidence 66666666666666666666666666666666 3666666666666666666443
No 103
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.73 E-value=3.9e-17 Score=143.18 Aligned_cols=173 Identities=13% Similarity=0.046 Sum_probs=151.0
Q ss_pred hhcHHHHHHHHHhHHhc------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc-------hhhHH
Q psy4772 46 CNLFSDELSYIEGLISH------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES-------PWNYL 112 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~-------aw~~~ 112 (235)
.|++++|+.+|++|+++ .|..+.+++++|.++..+|+++ +|+..+.+++.+.++... ++ ..
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~-~~ 189 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTY-----FSMDYARQAYEIYKEHEAYNIRLLQCH-SL 189 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHTCSTTHHHHHHHH-HH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHhCccchHHHHHHH-HH
Confidence 47899999999999998 4446799999999999999875 799999999999777654 67 47
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCCh------HHHHHHHHHHHHhhHhHHHHHHHHHHHHH-----hC-CCChHHhH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANY------TVWQYRREILKALNKDLHQELKYIGEKIK-----EN-SKNYQVWR 180 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~------~aw~~r~~~l~~l~~~~eeal~~~~~al~-----~~-P~n~~aw~ 180 (235)
+|.++..+|++++|+..+++++.+.|+.. .+++++|.++..+| ++++|+.+++++++ .+ |....+++
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS-QYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 99999999999999999999999876655 59999999999999 59999999999999 57 88899999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHh-----CCCChHHhHHHHHHHhhcCC
Q psy4772 181 HRQIIVEWMGEPDEELALTAAILAQ-----DAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 181 ~r~~~l~~l~~~~~Al~~~~~ai~l-----dp~n~~aw~~r~~~l~~l~~ 225 (235)
++|.++..+|++++|+.++++++.+ +|.....+..++.+....|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999998 55555555666666666554
No 104
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.73 E-value=4.4e-18 Score=136.32 Aligned_cols=144 Identities=9% Similarity=0.014 Sum_probs=104.3
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC----------------chh
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE----------------SPW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~----------------~aw 109 (235)
.+.|+++.+.++......++.+..|..+|.++...|+++ +|+..|.+++.+.|.++ .+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEIN-----EAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 466788888888888888888888888888888888764 68888888888888887 666
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l 189 (235)
+.+|.++..+|++++|+.++++++.++|.+..+++.+|.++..+| ++++|+.+++++++++|.+..++..++.++..+
T Consensus 92 -~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 92 -LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFG-FLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 467777777777777777777777777777777777777777777 477777777777777777777777777777666
Q ss_pred CCchHHH
Q psy4772 190 GEPDEEL 196 (235)
Q Consensus 190 ~~~~~Al 196 (235)
++..++.
T Consensus 170 ~~~~~~~ 176 (198)
T 2fbn_A 170 KEARKKD 176 (198)
T ss_dssp HHHHC--
T ss_pred HHHHHHH
Confidence 5544433
No 105
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.73 E-value=2.8e-17 Score=127.72 Aligned_cols=119 Identities=14% Similarity=0.115 Sum_probs=109.6
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
.+|.++.+|+.+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++|+.+++++++++|.+.
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 79 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYS-----KAIDLYTQALSIAPANPIYL-SNRAAAYSASGQHEKAAEDAELATVVDPKYS 79 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHSTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCcCHHHH-HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 45678899999999999999875 79999999999999999999 6899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHH
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVE 187 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~ 187 (235)
.+|+++|.++..+| ++++|+.+++++++++|++..+|+.++....
T Consensus 80 ~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 80 KAWSRLGLARFDMA-DYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999 5999999999999999999999998887653
No 106
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.72 E-value=7.9e-17 Score=118.80 Aligned_cols=120 Identities=16% Similarity=0.108 Sum_probs=70.7
Q ss_pred CCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 103 PKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHR 182 (235)
Q Consensus 103 p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r 182 (235)
|.+..+| +.+|.++...|++++|+..+++++.++|.+..+|+.+|.++..++ ++++|+.+++++++.+|.+..+|+.+
T Consensus 13 ~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMV-KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL-EFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SCHHHHH-HHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTT-CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 3444455 355555555666666666666666666666666666666665555 35666666666666666666666666
Q ss_pred HHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 183 QIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 183 ~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
|.++...|++++|+.++++++.++|.+..+|..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666555554433
No 107
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.72 E-value=9.2e-18 Score=147.18 Aligned_cols=180 Identities=8% Similarity=0.032 Sum_probs=161.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCch----hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh------CCCCCchhhHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNN----SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI------APKNESPWNYLRGA 115 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~----~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l------~p~~~~aw~~~~g~ 115 (235)
.|++++|+.+|+++++++|+++ .+|..+|.++..+|+++ +|+..+.+++.+ .|....+| +.+|.
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~l~~ 134 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYN-----KAMQYHKHDLTLAKSMNDRLGEAKSS-GNLGN 134 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHH
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHccCchHHHHHH-HHHHH
Confidence 4789999999999999999987 68999999999999875 799999999998 68888899 58999
Q ss_pred HHhcccccHHHHHHHHHHHHc------CCCChHHHHHHHHHHHHhhHh-----------------HHHHHHHHHHHHHhC
Q psy4772 116 VVNAGEKSERALALTADAITM------NPANYTVWQYRREILKALNKD-----------------LHQELKYIGEKIKEN 172 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l------~P~~~~aw~~r~~~l~~l~~~-----------------~eeal~~~~~al~~~ 172 (235)
++...|++++|+..+++++.+ .|....++..+|.++..+| + +++|+.++++++++.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG-KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-cccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 7788889999999999999 7 899999999998864
Q ss_pred ------CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH------HhHHHHHHHhhcCCccccccc
Q psy4772 173 ------SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH------AWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 173 ------P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~------aw~~r~~~l~~l~~~~~~~~~ 232 (235)
|....+|..+|.++...|++++|+.++++++.+.|.+.. ++.++|.++..+|+..++.-.
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 444569999999999999999999999999999887666 899999999999988776543
No 108
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1.6e-16 Score=145.56 Aligned_cols=170 Identities=9% Similarity=-0.019 Sum_probs=151.6
Q ss_pred HHHHHHHhHHh-cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC-chhhHHHHHHHhcccccHHHHH
Q psy4772 51 DELSYIEGLIS-HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE-SPWNYLRGAVVNAGEKSERALA 128 (235)
Q Consensus 51 ~Al~~~~~aL~-~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~-~aw~~~~g~il~~~~~~~eAl~ 128 (235)
+|+..|++|++ ++|+++.+|..+|.++...|+++ +|...|.++++++|.++ .+| ...|.++...|++++|+.
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~-----~A~~~~~~al~~~p~~~~~~~-~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYE-----KVHSIYNRLLAIEDIDPTLVY-IQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHSSSSCHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH-----HHHHHHHHHhCccccCchHHH-HHHHHHHHHhcCHHHHHH
Confidence 89999999997 89999999999999999999764 79999999999999986 589 578899999999999999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHH-HHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 129 LTADAITMNPANYTVWQYRREIL-KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 129 ~~~~al~l~P~~~~aw~~r~~~l-~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
.|+++++..|..+..+...+.+. ...| +.++|...|+++++.+|+++.+|.+.+.++...|+.++|..+|++++...|
T Consensus 378 ~~~~Al~~~~~~~~~~~~~a~~~~~~~~-~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 378 IFKKAREDARTRHHVYVTAALMEYYCSK-DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHTCTTCCTHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 99999999999988888777663 3577 589999999999999999999999999999999999999999999999987
Q ss_pred CChH----HhHHHHHHHhhcCCcc
Q psy4772 208 KNYH----AWQHRQWVINLLDDDD 227 (235)
Q Consensus 208 ~n~~----aw~~r~~~l~~l~~~~ 227 (235)
.++. .|..........|+..
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHH
Confidence 7665 8877666666667543
No 109
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.71 E-value=1.6e-16 Score=121.67 Aligned_cols=133 Identities=13% Similarity=0.053 Sum_probs=118.4
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
.+..|..+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++|+..+++++.++|.++.+|+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 85 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYE-----NAIKFYSQAIELNPSNAIYY-GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHSTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHccCHH-----HHHHHHHHHHHhCCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 4577899999999998874 79999999999999999999 58999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH--HHHcCCchHHHHHHHHHHHh
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII--VEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~--l~~l~~~~~Al~~~~~ai~l 205 (235)
.+|.++..+| ++++|+.+++++++++|.+..+|..++.+ +...|++++|+..+.++..+
T Consensus 86 ~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 86 RRAASNMALG-KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999 59999999999999999999999665555 77889999999998887664
No 110
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.71 E-value=4.3e-17 Score=127.76 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHH-HHHhhHhH--HHHHHHH
Q psy4772 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREI-LKALNKDL--HQELKYI 165 (235)
Q Consensus 89 ~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~-l~~l~~~~--eeal~~~ 165 (235)
++|+..+.+++..+|.++.+| +.+|.++...|++++|+.++++++.++|.++.+|..+|.+ +...| .+ ++|+.++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~-~~~~~~A~~~~ 104 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQW-ALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS-QHMTAQTRAMI 104 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT-TCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-CcchHHHHHHH
Confidence 368999999999999999999 6899999999999999999999999999999999999999 77888 48 9999999
Q ss_pred HHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 166 GEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 166 ~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
+++++++|.+..+|+.+|.++...|++++|+..+++++.++|.+...+.-...+
T Consensus 105 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 105 DKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 999999999999999999999999999999999999999999997766544433
No 111
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=144.92 Aligned_cols=180 Identities=7% Similarity=0.056 Sum_probs=150.3
Q ss_pred hhcHHHHHHHHHhHHhcCCCc----hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh------CCCCCchhhHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRN----NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI------APKNESPWNYLRGA 115 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~----~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l------~p~~~~aw~~~~g~ 115 (235)
.|++++|+.+|+++++..|++ +.+|..+|.++...|+++ +|+..+.+++.+ .|....++ ..+|.
T Consensus 22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~la~ 95 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA-----KALEYHHHDLTLARTIGDQLGEAKAS-GNLGN 95 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHH
T ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHhccccHHHHHHH-HHHHH
Confidence 478999999999999999998 468899999999998874 688888888887 45556677 57889
Q ss_pred HHhcccccHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHhhHh--------------------HHHHHHHHHHHH
Q psy4772 116 VVNAGEKSERALALTADAITMNPAN------YTVWQYRREILKALNKD--------------------LHQELKYIGEKI 169 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l~P~~------~~aw~~r~~~l~~l~~~--------------------~eeal~~~~~al 169 (235)
++...|++++|+..+++++.+.|.. ..++..+|.++..+| + +++|+..+++++
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 174 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887765 448889999999988 6 899999999988
Q ss_pred Hh------CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH------HhHHHHHHHhhcCCccccccc
Q psy4772 170 KE------NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH------AWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 170 ~~------~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~------aw~~r~~~l~~l~~~~~~~~~ 232 (235)
++ .|....++..+|.++...|++++|+.++++++.+.|+... ++.++|.++..+|+..++.-.
T Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 175 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 87 4555668899999999999999999999999988777665 888899988888887766543
No 112
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.71 E-value=1.3e-16 Score=116.77 Aligned_cols=120 Identities=16% Similarity=0.107 Sum_probs=74.9
Q ss_pred CCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 104 KNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 104 ~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
.++.+| +.+|.++...|++++|+..+++++.++|.+..+|..+|.++..+| ++++|+.+++++++.+|.++.+|+.+|
T Consensus 10 ~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERL-KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG-NYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHH-HHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh-chHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 334444 355666666666666666666666666666666666666666666 366666666666666666666666666
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 184 IIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 184 ~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
.++...|++++|+.++++++.++|.+..+|..++.++..+|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666655554
No 113
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-16 Score=116.87 Aligned_cols=123 Identities=11% Similarity=0.065 Sum_probs=113.6
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY 141 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~ 141 (235)
..|..+.+|+.+|.++...|+++ +|+..|.+++.++|.+..+| +.+|.++...|++++|+.++++++.++|.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 84 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYP-----QAMKHYTEAIKRNPKDAKLY-SNRAACYTKLLEFQLALKDCEECIQLEPTFI 84 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSH-----HHHHHHHHHHTTCTTCHHHH-HHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cCcccHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCCcHHHH-HHHHHHHHHhccHHHHHHHHHHHHHhCCCch
Confidence 35778899999999999999885 79999999999999999999 6899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCC
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE 191 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~ 191 (235)
.+|+.+|.++..+| ++++|+.+++++++.+|.+..+|..++.++...|+
T Consensus 85 ~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 85 KGYTRKAAALEAMK-DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh-hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999 59999999999999999999999999999887764
No 114
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.70 E-value=1.3e-16 Score=116.76 Aligned_cols=126 Identities=15% Similarity=0.138 Sum_probs=117.3
Q ss_pred HhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCC
Q psy4772 60 ISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPA 139 (235)
Q Consensus 60 L~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~ 139 (235)
...+|.++.+|..+|.++...|+++ +|+..+.+++.++|.++.+| +.+|.++...|++++|+.++++++.++|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 78 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFE-----AAVHFYGKAIELNPANAVYF-CNRAAAYSKLGNYAGAVQDCERAICIDPA 78 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhcchhhhHHHHHHHHHHHHccCHH-----HHHHHHHHHHHcCCCCHHHH-HHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence 3567888999999999999999874 79999999999999999999 68999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCc
Q psy4772 140 NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEP 192 (235)
Q Consensus 140 ~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~ 192 (235)
++.+|+.+|.++..+| ++++|+.+++++++.+|.+..+|..++.++..+|++
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 YSKAYGRMGLALSSLN-KHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999 599999999999999999999999999999998875
No 115
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.70 E-value=8.1e-18 Score=143.82 Aligned_cols=177 Identities=10% Similarity=-0.057 Sum_probs=143.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhH-------HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHH------
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQR-------YFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYL------ 112 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~-------g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~------ 112 (235)
-+++..|+..|.++++++|+.+++|..+ +.++..++++. +++..+.+++.+.|....+| +.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~-----~a~~~~~~~l~l~p~~l~a~-~~~~g~y~ 92 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSR-----RNFGQLSGSVQISMSTLNAR-IAIGGLYG 92 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTG-----GGTTHHHHTTTCCGGGGCCE-EECCTTTC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHH-----HHHHHHHHHhcCChhhhhhh-hccCCccc
Confidence 3678999999999999999999999999 89999988775 57788889999999988888 55
Q ss_pred ---------------HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-CCC-
Q psy4772 113 ---------------RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN-SKN- 175 (235)
Q Consensus 113 ---------------~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-P~n- 175 (235)
.+.++...|++++|.+.++.++...|+.. +++.++.++.+.+ +|++++..++++++.. |..
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~-r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAE-RWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTT-CHHHHHHHHTTGGGCSCHHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcC-CHHHHHHHHHHhhccCCcccH
Confidence 33667788899999999998888888888 8888888888888 4888888888776642 221
Q ss_pred hHHhHHHHHHHHHcCCchHHHHHHHHHHHhC--CC-ChHHhHHHHHHHhhcCCccccc
Q psy4772 176 YQVWRHRQIIVEWMGEPDEELALTAAILAQD--AK-NYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 176 ~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ld--p~-n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
..+++++|.++..+|++++|+.+|++++... |. ...+++++|.++..+|+.++|.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~ 228 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV 228 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence 2478888888888888888888888887544 55 5568888888888888877664
No 116
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.70 E-value=1.7e-17 Score=132.90 Aligned_cols=160 Identities=7% Similarity=-0.035 Sum_probs=121.7
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh--
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY-- 141 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~-- 141 (235)
|..+..+.+-+.+...+|.++ +|.+.+.......+.....| ..+|.++...|++++|+..|++++.+.|.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 74 (198)
T 2fbn_A 1 MGSSHHHHHHSSGRENLYFQG-----AKKSIYDYTDEEKVQSAFDI-KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW 74 (198)
T ss_dssp --------------------------CCCSGGGCCHHHHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC
T ss_pred CCCcccccchhhhhhhhhhcc-----ccCchhhCCHHHHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 344566677777777777765 34444554455555566677 5899999999999999999999999999998
Q ss_pred --------------HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 142 --------------TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 142 --------------~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
.+|+++|.++..+| ++++|+.+++++++++|.+..+|+.+|.++..+|++++|+..+++++.++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 75 DDQILLDKKKNIEISCNLNLATCYNKNK-DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 89999999999999 599999999999999999999999999999999999999999999999999
Q ss_pred CChHHhHHHHHHHhhcCCccccc
Q psy4772 208 KNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 208 ~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
.+..++..++.++..+++..++.
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998777665544
No 117
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.70 E-value=2.6e-17 Score=138.25 Aligned_cols=179 Identities=7% Similarity=0.054 Sum_probs=141.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCc----hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh------CCCCCchhhHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRN----NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI------APKNESPWNYLRGA 115 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~----~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l------~p~~~~aw~~~~g~ 115 (235)
.|++++|+.+|+++++.+|++ ..++..+|.++...|+++ +|+..+.+++.+ .|....+| ..+|.
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~l~~ 91 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA-----KALEYHHHDLTLARTIGDQLGEAKAS-GNLGN 91 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHH
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHhhcccccHHHHHHH-HHHHH
Confidence 478889999999999988888 467888888888888764 688888888777 55556677 46888
Q ss_pred HHhcccccHHHHHHHHHHHHcCCCChH------HHHHHHHHHHHhhHh--------------------HHHHHHHHHHHH
Q psy4772 116 VVNAGEKSERALALTADAITMNPANYT------VWQYRREILKALNKD--------------------LHQELKYIGEKI 169 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l~P~~~~------aw~~r~~~l~~l~~~--------------------~eeal~~~~~al 169 (235)
++...|++++|+..+++++++.|.... ++..+|.++..+| + +++|+..+++++
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC-cccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 888888888888888888887766543 8888888888888 6 788888888887
Q ss_pred Hh------CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH------HhHHHHHHHhhcCCcccccc
Q psy4772 170 KE------NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH------AWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 170 ~~------~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~------aw~~r~~~l~~l~~~~~~~~ 231 (235)
.. .|....++..+|.++...|++++|+..+++++.+.|.... ++.++|.++..+|+.+++.-
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 76 3444568888888888888888888888888887666544 78888888888887766543
No 118
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.69 E-value=3.4e-17 Score=128.57 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=101.1
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC-------Cc-----hhhHHHHHHHhcccccHHHHHHHHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN-------ES-----PWNYLRGAVVNAGEKSERALALTADA 133 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~-------~~-----aw~~~~g~il~~~~~~~eAl~~~~~a 133 (235)
.+..|.++|.++...|+|+ +|+..|+++|+++|++ .. +| +++|.++..+|++++|+.+|+++
T Consensus 10 ~a~~~~~~G~~l~~~g~~e-----eAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~-~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYD-----EAAANCRRAMEISHTMPPEEAFDHAGFDAFCH-AGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhhCCCCcchhhhhhccchHHHH-HHHHHHHHHCCCHHHHHHHHHHH
Confidence 3567889999999999875 7999999999999994 33 99 58999999999999999999999
Q ss_pred HHc-------CCCChHHH----HHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 134 ITM-------NPANYTVW----QYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 134 l~l-------~P~~~~aw----~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
|++ +|+++.+| ++||.++..+|+ +++|+.+|+++|+++|.+..+...+..+.
T Consensus 84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr-~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 999 99999999 999999999995 99999999999999999877766555444
No 119
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.69 E-value=2.1e-16 Score=122.46 Aligned_cols=114 Identities=15% Similarity=0.090 Sum_probs=99.2
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHc------------------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITM------------------NPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l------------------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
..+|..+...|++++|+..|+++|.+ +|.+..+|+++|.++..+| ++++|+.+++++|+++
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG-DLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhcC
Confidence 45788888888888888888888888 7888899999999999999 5999999999999999
Q ss_pred CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCCh-HHhHHHHHHHhhcCC
Q psy4772 173 SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY-HAWQHRQWVINLLDD 225 (235)
Q Consensus 173 P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~-~aw~~r~~~l~~l~~ 225 (235)
|.++.+|+.+|.++..+|++++|+..+++++.++|++. .....++.+...++.
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 667777777655443
No 120
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.68 E-value=1.2e-16 Score=131.69 Aligned_cols=153 Identities=8% Similarity=0.084 Sum_probs=140.3
Q ss_pred hhcHHHHHHHHHhHHhc--------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh--------CCCCCchh
Q psy4772 46 CNLFSDELSYIEGLISH--------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI--------APKNESPW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l--------~p~~~~aw 109 (235)
.|++++|+.++++++++ +|..+.++.++|.++..+|+++ +|+..|.+++.+ +|....++
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~~ 130 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK-----EAEPLCKRALEIREKVLGKFHPDVAKQL 130 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHH-----HHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHH-----HHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 58899999999999988 5888999999999999999875 799999999998 57778888
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh----------
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITM--------NPANYTVWQYRREILKALNKDLHQELKYIGEKIKE---------- 171 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l--------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~---------- 171 (235)
+.+|.++...|++++|+..+++++.+ .|....++..+|.++..+| ++++|+.++++++++
T Consensus 131 -~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~ 208 (283)
T 3edt_B 131 -NNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG-KYQDAETLYKEILTRAHEKEFGSVN 208 (283)
T ss_dssp -HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 58999999999999999999999999 8888999999999999999 599999999999986
Q ss_pred ---------------------------------------CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 172 ---------------------------------------NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 172 ---------------------------------------~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
.|....++..+|.++...|++++|+.++++++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 209 GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566678999999999999999999999999975
No 121
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.68 E-value=3.8e-17 Score=141.89 Aligned_cols=179 Identities=12% Similarity=0.118 Sum_probs=131.7
Q ss_pred hhcHHHHHHHHHhHHhc------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc------hhhHHH
Q psy4772 46 CNLFSDELSYIEGLISH------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES------PWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~------aw~~~~ 113 (235)
.|++++|+.++++++.+ .|..+.++..+|.++..+|+++ +|+..+.+++.+.|.... ++ ..+
T Consensus 60 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~l 133 (406)
T 3sf4_A 60 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD-----EAIVCCQRHLDISRELNDKVGEARAL-YNL 133 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHTCHHHHHHHH-HHH
T ss_pred hcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHhcccccchHHHH-HHH
Confidence 47788888888888877 5666788888888888888764 677777777777766544 66 467
Q ss_pred HHHHhcccc--------------------cHHHHHHHHHHHHc------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 114 GAVVNAGEK--------------------SERALALTADAITM------NPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 114 g~il~~~~~--------------------~~eAl~~~~~al~l------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
|.++...|+ +++|+..+.+++.+ .|....++.++|.++..+| ++++|+.++++
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~ 212 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-BHHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHH
Confidence 777777777 77777777777776 4455567777777777777 47777777777
Q ss_pred HHHhCCCChH------HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC------hHHhHHHHHHHhhcCCcccccc
Q psy4772 168 KIKENSKNYQ------VWRHRQIIVEWMGEPDEELALTAAILAQDAKN------YHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 168 al~~~P~n~~------aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n------~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
++++.|+... ++.++|.++...|++++|+.++++++.+.|.. ..++..+|.++..+|+..+|.-
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 7777665544 77777777777777777777777777777666 6677777777777777665543
No 122
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.68 E-value=4.8e-16 Score=116.04 Aligned_cols=118 Identities=14% Similarity=0.029 Sum_probs=86.1
Q ss_pred hCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhH
Q psy4772 101 IAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWR 180 (235)
Q Consensus 101 l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~ 180 (235)
.+|.++.+| +.+|.++...|++++|+..+++++.++|.++.+|+.+|.++..+| ++++|+.+++++++++|.++.+|+
T Consensus 4 ~~~~~~~~~-~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~ 81 (137)
T 3q49_B 4 MKSPSAQEL-KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-QPEQALADCRRALELDGQSVKAHF 81 (137)
T ss_dssp --CCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CccccHHHH-HHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCchhHHHHH
Confidence 456666677 567777777777777777777777777777777777777777777 477777777777777777777777
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHhCCC-----ChHHhHHHHHHH
Q psy4772 181 HRQIIVEWMGEPDEELALTAAILAQDAK-----NYHAWQHRQWVI 220 (235)
Q Consensus 181 ~r~~~l~~l~~~~~Al~~~~~ai~ldp~-----n~~aw~~r~~~l 220 (235)
.+|.++..+|++++|+..+++++.++|+ +...+..++.+.
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777 556655555554
No 123
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.68 E-value=1.7e-16 Score=118.38 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=65.2
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
+.+|.++...|++++|+..++++++++|+++.+|+.+|.++..+| ++++|+.+++++++++|.+..+|+.+|.++...|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE-KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 456666666677777777777777777777777777777777776 3677777777777777777777777777777777
Q ss_pred CchHHHHHHHHHHHhCCCCh
Q psy4772 191 EPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 191 ~~~~Al~~~~~ai~ldp~n~ 210 (235)
++++|+..++++++++|++.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 77777777777777776654
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.67 E-value=1.9e-15 Score=109.46 Aligned_cols=120 Identities=18% Similarity=0.271 Sum_probs=91.0
Q ss_pred CCCC-CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhH
Q psy4772 102 APKN-ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWR 180 (235)
Q Consensus 102 ~p~~-~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~ 180 (235)
+|.. ..+| +.+|.++...|++++|+..+++++..+|.+..+|+.++.++...| ++++|+.+++++++.+|.+..+|+
T Consensus 4 ~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~ 81 (125)
T 1na0_A 4 DPGNSAEAW-YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWY 81 (125)
T ss_dssp ---CHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CccccHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCccHHHHH
Confidence 4444 4566 467777777788888888888888888888888888888888777 478888888888888888888888
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhc
Q psy4772 181 HRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLL 223 (235)
Q Consensus 181 ~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l 223 (235)
.++.++...|++++|+..+++++.++|.+..++..++.++...
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 8888888888888888888888888888888887777776543
No 125
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=133.97 Aligned_cols=156 Identities=9% Similarity=0.099 Sum_probs=141.9
Q ss_pred hhcHHHHHHHHHhHHhc--------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhC--------CCCCchh
Q psy4772 46 CNLFSDELSYIEGLISH--------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIA--------PKNESPW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~--------p~~~~aw 109 (235)
.|++++|+.++++++.+ .|....++..+|.++..+|+++ +|+..+.+++.+. |....+|
T Consensus 82 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 82 QNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK-----EAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH-----HHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHH-----HHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 47899999999999988 5788999999999999999875 7999999999884 6666788
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh----------
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITM--------NPANYTVWQYRREILKALNKDLHQELKYIGEKIKE---------- 171 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l--------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~---------- 171 (235)
..+|.++...|++++|+.++++++.+ +|....++..++.++..+| ++++|+.++++++++
T Consensus 157 -~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 157 -NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG-KFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp -HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 57999999999999999999999998 8888999999999999999 599999999999984
Q ss_pred ---------------------------------------CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 172 ---------------------------------------NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 172 ---------------------------------------~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
+|.+..+|..+|.++...|++++|+.++++++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 5777889999999999999999999999999999886
No 126
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.67 E-value=8.1e-16 Score=109.74 Aligned_cols=108 Identities=17% Similarity=0.303 Sum_probs=98.2
Q ss_pred hCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC--ChHH
Q psy4772 101 IAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK--NYQV 178 (235)
Q Consensus 101 l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~--n~~a 178 (235)
++|.++.+| +.+|.++...|++++|+..++++++++|.+..+|..+|.++..+| ++++|+.+++++++.+|. +..+
T Consensus 1 l~p~~~~~~-~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 1 MVDQNPEEY-YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLE-RYEEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp CCCSSTTGG-GGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred CCCCcHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCcccchHHH
Confidence 478888898 578999999999999999999999999999999999999999999 489999999999999999 9999
Q ss_pred hHHHHHHHHHc-CCchHHHHHHHHHHHhCCCCh
Q psy4772 179 WRHRQIIVEWM-GEPDEELALTAAILAQDAKNY 210 (235)
Q Consensus 179 w~~r~~~l~~l-~~~~~Al~~~~~ai~ldp~n~ 210 (235)
|+.+|.++..+ |++++|++++++++..+|.+.
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999999 999999999999999998764
No 127
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.67 E-value=3e-16 Score=116.99 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=89.5
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHH
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQY 146 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~ 146 (235)
...++.+|.++...|+++ +|+..|.++++++|+++.+| +.+|.++...|++++|+.+++++++++|++..+|..
T Consensus 17 ~~~~~~~g~~~~~~g~~~-----~A~~~~~~al~~~P~~~~a~-~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLA-----EAALAFEAVCQKEPEREEAW-RSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp CSCHHHHHHHHHHTTCHH-----HHHHHHHHHHHHSTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhHHHHHHHHHHcCCHH-----HHHHHHHHHHHHCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 356788999999998874 79999999999999999999 689999999999999999999999999999999999
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 147 RREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 147 r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
+|.++..+|+ +++|+..++++++++|.+..
T Consensus 91 la~~~~~~g~-~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 91 LAVSHTNEHN-ANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHC-------
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHhCcCCCC
Confidence 9999999995 99999999999999998754
No 128
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.66 E-value=4.7e-17 Score=142.63 Aligned_cols=179 Identities=11% Similarity=0.083 Sum_probs=148.3
Q ss_pred hhcHHHHHHHHHhHHhc------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh------CCCCCchhhHHH
Q psy4772 46 CNLFSDELSYIEGLISH------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI------APKNESPWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l------~p~~~~aw~~~~ 113 (235)
.|++++|+.++++++++ .|..+.++..+|.++..+|+++ +|+..+.+++.+ .|....++ ..+
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~l 172 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFD-----EAAICCERHLTLARQLGDRLSEGRAL-YNL 172 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHTCHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHhhchHHHHHHH-HHH
Confidence 47899999999999998 7888999999999999999875 688888888888 56666677 578
Q ss_pred HHHHhcccc-----------------cHHHHHHHHHHHHcC------CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 114 GAVVNAGEK-----------------SERALALTADAITMN------PANYTVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 114 g~il~~~~~-----------------~~eAl~~~~~al~l~------P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
|.++...|+ +++|+..+++++++. |....++..+|.++..+| ++++|+.+++++++
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~ 251 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG-DFQAAIEHHQERLR 251 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Confidence 888888888 888888888888764 444568888888888888 48899999999888
Q ss_pred hCCCChH------HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC------hHHhHHHHHHHhhcCCcccccc
Q psy4772 171 ENSKNYQ------VWRHRQIIVEWMGEPDEELALTAAILAQDAKN------YHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 171 ~~P~n~~------aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n------~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
+.|.... ++..+|.++...|++++|+..+++++.+.|.. ..++..+|.++..+|+..++.-
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (411)
T 4a1s_A 252 IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIE 324 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8776554 88888888888999999999999988888765 6788888888888888766654
No 129
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.66 E-value=2.9e-16 Score=134.60 Aligned_cols=161 Identities=6% Similarity=-0.009 Sum_probs=140.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCc------hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC------CchhhHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRN------NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN------ESPWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~------~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~------~~aw~~~~ 113 (235)
.+++++|+.+|.+++.+.+.. +.++.++|.++..+|+++ +|+..|.+++.+.+.. ..++ ..+
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~-----~A~~~~~~Al~l~~~~g~~~~~a~~~-~~l 122 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP-----EAVQYIEKASVMYVENGTPDTAAMAL-DRA 122 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG-----GGHHHHHHHHHHHHTTTCHHHHHHHH-HHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHHHHHHcCCHHHHHHHH-HHH
Confidence 478999999999999998754 678999999999999986 6899999999986543 3466 478
Q ss_pred HHHHhcccccHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh------HHhHH
Q psy4772 114 GAVVNAGEKSERALALTADAITMNPAN------YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY------QVWRH 181 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l~P~~------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~------~aw~~ 181 (235)
|.++.. |++++|+.+|++++.+.|.. ..+++++|.++..+| ++++|+.++++++++.|.+. .++..
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ-KFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 999998 99999999999999998865 678999999999999 59999999999999987663 48888
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
+|.++..+|++++|+.++++++ ++|.+..+...
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~ 233 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHH
Confidence 9999999999999999999999 99988765433
No 130
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.66 E-value=4.9e-16 Score=116.73 Aligned_cols=97 Identities=9% Similarity=0.092 Sum_probs=76.5
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh-------HHhHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY-------QVWRHRQ 183 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~-------~aw~~r~ 183 (235)
..+|.++...|++++|+.+|+++|+++|+++.+|+++|.++..+| ++++|+.+++++|+++|++. .+++.+|
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK-KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh-hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 357777777888888888888888888888888888888888887 47888888888888777664 3677778
Q ss_pred HHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 184 IIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 184 ~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
.++..+|++++|+++|++++..+|+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 8888888888888888888888775
No 131
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.7e-15 Score=112.61 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=92.9
Q ss_pred HhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 100 QIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPAN---YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 100 ~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
..+|.+...| +.+|.++...|++++|+..++++++++|.+ ..+|..++.++..++ ++++|+.+++++++++|.+.
T Consensus 22 ~~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 22 TPGASSVEQL-RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE-DYDKAETEASKAIEKDGGDV 99 (148)
T ss_dssp CTTCCCHHHH-HHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTSCCH
T ss_pred ccchHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHhhCccCH
Confidence 3456666677 467777777788888888888888888876 777888888888887 47888888888888888888
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
.+|+.+|.++..+|++++|+.++++++.++|++..+|..++.+..
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 888888888888888888888888888888888887777666653
No 132
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.66 E-value=5.5e-16 Score=121.50 Aligned_cols=88 Identities=9% Similarity=0.148 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccccc----------HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH
Q psy4772 87 VIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS----------ERALALTADAITMNPANYTVWQYRREILKALNK 156 (235)
Q Consensus 87 ~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~----------~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~ 156 (235)
.+++|+..+.++++++|+++.+| +++|.++...+++ ++|+.+|+++|+++|++..+|+++|.+|..+|.
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~-~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNL-TRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 45666666677777777777766 4566666666543 366666666666666666666666666666541
Q ss_pred ----------hHHHHHHHHHHHHHhCCCC
Q psy4772 157 ----------DLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 157 ----------~~eeal~~~~~al~~~P~n 175 (235)
++++|+.+|++|++++|++
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 2555555555555555554
No 133
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.66 E-value=1.1e-16 Score=134.37 Aligned_cols=179 Identities=12% Similarity=0.122 Sum_probs=142.0
Q ss_pred hhcHHHHHHHHHhHHhc------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc------hhhHHH
Q psy4772 46 CNLFSDELSYIEGLISH------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES------PWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~------aw~~~~ 113 (235)
.|++++|+.++++++.+ .|..+.++..+|.++..+|+++ +|+..+.+++.+.|.... ++ ..+
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~l 129 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD-----EAIVCCQRHLDISRELNDKVGEARAL-YNL 129 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HHH
T ss_pred cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHH-----HHHHHHHHHHHHHHHhcCchHHHHHH-HHH
Confidence 47889999999999888 6677888999999999988874 688888888888777655 67 467
Q ss_pred HHHHhcccc--------------------cHHHHHHHHHHHHc------CCCChHHHHHHHHHHHHhhHhHHHHHHHHHH
Q psy4772 114 GAVVNAGEK--------------------SERALALTADAITM------NPANYTVWQYRREILKALNKDLHQELKYIGE 167 (235)
Q Consensus 114 g~il~~~~~--------------------~~eAl~~~~~al~l------~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~ 167 (235)
|.++...|+ +++|+..+++++.+ .|....++..+|.++..+| ++++|+.++++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~ 208 (338)
T 3ro2_A 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQ 208 (338)
T ss_dssp HHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHH
T ss_pred HHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 888888888 88888888888776 4555667888888888888 48888888888
Q ss_pred HHHhCCCChH------HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC------hHHhHHHHHHHhhcCCcccccc
Q psy4772 168 KIKENSKNYQ------VWRHRQIIVEWMGEPDEELALTAAILAQDAKN------YHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 168 al~~~P~n~~------aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n------~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
++++.|.... ++..+|.++...|++++|+..+++++.+.|.. ..++..+|.++..+|+..++.-
T Consensus 209 a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 209 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8877665443 88888888888888888888888888877766 6777888888877777766543
No 134
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.66 E-value=3.2e-16 Score=122.82 Aligned_cols=102 Identities=18% Similarity=0.184 Sum_probs=91.2
Q ss_pred hhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCH-----HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHh
Q psy4772 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTP-----EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVN 118 (235)
Q Consensus 44 ~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e-----~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~ 118 (235)
.+++.|++|+..++++++++|+++++|+++|.++..++++.. +.+++|+..|+++|+++|++..+| +++|.++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~-~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAV-WCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHH-HHHHHHHH
Confidence 457889999999999999999999999999999999988753 247799999999999999999999 68999999
Q ss_pred ccc-----------ccHHHHHHHHHHHHcCCCChHHHHH
Q psy4772 119 AGE-----------KSERALALTADAITMNPANYTVWQY 146 (235)
Q Consensus 119 ~~~-----------~~~eAl~~~~~al~l~P~~~~aw~~ 146 (235)
.+| ++++|+.+|++||+++|++...+..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 875 8999999999999999998644433
No 135
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.66 E-value=2.9e-15 Score=107.62 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=92.8
Q ss_pred chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 107 ~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
.+| +.+|.++...|++++|+..+++++..+|.++.+|..+|.++..+| ++++|+..++++++.+|.++.+|+.+|.++
T Consensus 5 ~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NEL-KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG-DYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345 467888888888888888888888888888888888888888888 488888888888888888888888888888
Q ss_pred HHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 187 EWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 187 ~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
...|++++|+..+++++.++|.+..+|..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8888888888888888888888888888777654
No 136
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.66 E-value=4.9e-16 Score=116.00 Aligned_cols=122 Identities=7% Similarity=0.007 Sum_probs=109.0
Q ss_pred hcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC
Q psy4772 61 SHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPAN 140 (235)
Q Consensus 61 ~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~ 140 (235)
..+|.++.+|+.+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++|+..++++++++|++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYP-----EAAACYGRAITRNPLVAVYY-TNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCccccHHHHHHHHHHHHHhCcHH-----HHHHHHHHHHhhCcCcHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 467889999999999999999875 79999999999999999999 689999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC-----ChHHhHHHHHHHHHc
Q psy4772 141 YTVWQYRREILKALNKDLHQELKYIGEKIKENSK-----NYQVWRHRQIIVEWM 189 (235)
Q Consensus 141 ~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~-----n~~aw~~r~~~l~~l 189 (235)
+.+|+.+|.++..+| ++++|+.+++++++++|+ +..++..+..+..+.
T Consensus 77 ~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 77 VKAHFFLGQCQLEME-SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 599999999999999998 677777666665443
No 137
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.66 E-value=2e-15 Score=120.88 Aligned_cols=129 Identities=10% Similarity=0.029 Sum_probs=117.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|++++ +| ++.+|+++|.++..+|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++
T Consensus 19 ~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~-~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMT-----EAEKAFTRSINRDKHLAVAY-FQRGMLYYQTEKYDL 89 (213)
T ss_dssp TTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred hCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCccchHHH-HHHHHHHHHcccHHH
Confidence 478999999999996 44 7899999999999999874 79999999999999999999 689999999999999
Q ss_pred HHHHHHHHHHcCCCCh----------------HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHH
Q psy4772 126 ALALTADAITMNPANY----------------TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQI 184 (235)
Q Consensus 126 Al~~~~~al~l~P~~~----------------~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~ 184 (235)
|+..+++++++.|++. .+|+++|.++..+| ++++|+.+++++++++|.+.......+.
T Consensus 90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~ 163 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE-EWKKAEEQLALATSMKSEPRHSKIDKAM 163 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCcccccchHHHHH
Confidence 9999999999998887 99999999999999 5999999999999999998665544443
No 138
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.66 E-value=1.9e-17 Score=151.27 Aligned_cols=145 Identities=12% Similarity=0.058 Sum_probs=114.4
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHH
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTV 143 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~a 143 (235)
|+.+.+|..+|.++...|+++ +|++.|.++++++|.+..+| +.+|.++..+|++++|+..++++++++|+++.+
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~-----~A~~~~~~Al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 76 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYE-----NAIKFYSQAIELNPSNAIYY-GNRSLAYLRTECYGYALGDATRAIELDKKYIKG 76 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHhCCccHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence 345667778888888777764 68888888888888888888 578888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH--HHHcCCchHHHHHHH-----------HHHHhCCCCh
Q psy4772 144 WQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII--VEWMGEPDEELALTA-----------AILAQDAKNY 210 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~--l~~l~~~~~Al~~~~-----------~ai~ldp~n~ 210 (235)
|+++|.++..+| ++++|+..++++++++|++..+|..++.+ +...|++++|++.++ +++.++|++.
T Consensus 77 ~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 77 YYRRAASNMALG-KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 888888888888 48888888888888888888888888888 777788888888888 8888888776
Q ss_pred HHhHH
Q psy4772 211 HAWQH 215 (235)
Q Consensus 211 ~aw~~ 215 (235)
.++..
T Consensus 156 ~~~~~ 160 (477)
T 1wao_1 156 GPKLE 160 (477)
T ss_dssp SCCCG
T ss_pred ccccc
Confidence 65544
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.65 E-value=8.7e-17 Score=136.65 Aligned_cols=163 Identities=9% Similarity=0.090 Sum_probs=127.5
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..|+++|+.+|.++.+|+++|.++..+|+++ +|+..+.++++++|+++.+| +.+|.++..+|++++
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-----~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~ 90 (281)
T 2c2l_A 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE-----QALADCRRALELDGQSVKAH-FFLGQCQLEMESYDE 90 (281)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHTTSCTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHH
Confidence 478899999999999999999999999999999888764 78889999999999999888 578899999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHh
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~l 205 (235)
|+..++++++++|++...+....+.... ..++...........|.+.....+++.++ .|++++|++.+++|+++
T Consensus 91 A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~ 164 (281)
T 2c2l_A 91 AIANLQRAYSLAKEQRLNFGDDIPSALR----IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEG 164 (281)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSHHHHHHH----HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTT
T ss_pred HHHHHHHHHHhCccchhhHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhcc
Confidence 9999999999888775443322222222 23333444445567888888888887776 68899999999999999
Q ss_pred CCCChHHhHHHHHHH
Q psy4772 206 DAKNYHAWQHRQWVI 220 (235)
Q Consensus 206 dp~n~~aw~~r~~~l 220 (235)
+|.+.......+.+.
T Consensus 165 ~p~~~~~~~~l~~~~ 179 (281)
T 2c2l_A 165 HEDDGHIRAQQACIE 179 (281)
T ss_dssp TSCHHHHTHHHHHHH
T ss_pred ccchhhhhhHHHHHH
Confidence 999887766665544
No 140
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.65 E-value=3e-15 Score=109.42 Aligned_cols=123 Identities=14% Similarity=0.366 Sum_probs=116.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
.|++++|+..++++++.+|.++.+|..+|.++...|+++ +|+..+.+++..+|.+..+| +.+|.++...|++++
T Consensus 14 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~ 87 (136)
T 2fo7_A 14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD-----EAIEYYQKALELDPRSAEAW-YNLGNAYYKQGDYDE 87 (136)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHTTTCHHH
T ss_pred cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHCCCchHHH-HHHHHHHHHhcCHHH
Confidence 578999999999999999999999999999999998764 79999999999999999999 589999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
|+..+++++..+|.+..+|..++.++...| ++++|+.+++++++.+|.+
T Consensus 88 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHc-cHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999 5999999999999999974
No 141
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.64 E-value=5.7e-16 Score=116.34 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=93.5
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCCh--
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANY-- 141 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~-- 141 (235)
++.+.++.++|.+++..|+|+ +|+..|.++|+++|+++.+| +++|.++..+|++++|+..++++|+++|++.
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~-----~A~~~y~~Al~~~p~~~~~~-~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFE-----KAHVHYDKAIELDPSNITFY-NNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH-HhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 455678999999999999875 79999999999999999999 5899999999999999999999999999875
Q ss_pred -----HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 142 -----TVWQYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 142 -----~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
.+++.+|.++..++ ++++|+.+|+++++.+|+
T Consensus 79 ~~~~a~~~~~lg~~~~~~~-~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQN-DLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcC
Confidence 47778888888888 599999999999999885
No 142
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.64 E-value=6.3e-17 Score=141.29 Aligned_cols=152 Identities=7% Similarity=-0.017 Sum_probs=99.1
Q ss_pred HHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC-----------------chhhHHHHH
Q psy4772 53 LSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE-----------------SPWNYLRGA 115 (235)
Q Consensus 53 l~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~-----------------~aw~~~~g~ 115 (235)
...++..+...|..+..|..+|.++...|+|. +|+..|.+++.++|.+. .+| +++|.
T Consensus 165 ~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~-----~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~-~nla~ 238 (338)
T 2if4_A 165 KARSDMTVEERIGAADRRKMDGNSLFKEEKLE-----EAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCH-LNIAA 238 (338)
T ss_dssp BTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCH-----HHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHH-HHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHH-HHHHH
Confidence 34455555666778889999999999999985 79999999999999987 378 57999
Q ss_pred HHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHH-HcCCchH
Q psy4772 116 VVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVE-WMGEPDE 194 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~-~l~~~~~ 194 (235)
++..+|++++|+..++++|+++|++..+|+++|.++..+| ++++|+.+++++++++|.+..++..++.+.. ..+..++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g-~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELG-QMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 4999999999999999999999999998854 4556788
Q ss_pred HHHHHHHHHHhCCCChH
Q psy4772 195 ELALTAAILAQDAKNYH 211 (235)
Q Consensus 195 Al~~~~~ai~ldp~n~~ 211 (235)
+...|.+++.++|.+..
T Consensus 318 a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 318 QKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHhhCCCCCCCC
Confidence 88999999999998764
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.64 E-value=4.3e-15 Score=107.61 Aligned_cols=122 Identities=16% Similarity=0.321 Sum_probs=110.2
Q ss_pred cCCCc-hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC
Q psy4772 62 HDVRN-NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPAN 140 (235)
Q Consensus 62 ~~P~~-~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~ 140 (235)
.+|.. +.+|+.+|.++...|+++ +|+..+.+++..+|.+..+| +.+|.++...|++++|+..+++++.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYD-----EAIEYYQKALELDPNNAEAW-YNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCccccHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHCcCcHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 46666 789999999999999874 79999999999999999999 589999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 141 YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 141 ~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
..+|..++.++..+| ++++|+..++++++.+|.+..++..++.++...|
T Consensus 77 ~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 77 AEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999 5999999999999999999999999999887654
No 144
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.64 E-value=3e-15 Score=131.19 Aligned_cols=155 Identities=8% Similarity=-0.019 Sum_probs=137.1
Q ss_pred hhcHHHHHHHHHhHHhcC------CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC-------chhhHH
Q psy4772 46 CNLFSDELSYIEGLISHD------VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE-------SPWNYL 112 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~------P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~-------~aw~~~ 112 (235)
.|++++|+.+|++|+++. |..+.+++++|.++..+|++. +|+..+.+++.+.++.. .++ +.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~-~~ 187 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTH-----VSMYHILQALDIYQNHPLYSIRTIQSL-FV 187 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHTSTTCHHHHHHHH-HH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHHHhCCCchhhHHHHH-HH
Confidence 478999999999999884 346789999999999999875 79999999999876543 356 47
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCC------CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-----hCCCChHHhHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNP------ANYTVWQYRREILKALNKDLHQELKYIGEKIK-----ENSKNYQVWRH 181 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P------~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~-----~~P~n~~aw~~ 181 (235)
+|.++...|++++|+..+++++.+.+ ....+++++|.++..+| ++++|+.+++++++ .+|....++++
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG-DDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 89999999999999999999999743 23468999999999999 59999999999999 89999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCC
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQDA 207 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ldp 207 (235)
+|.++..+|++++|+.++++++.+.+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999844
No 145
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.63 E-value=4.3e-15 Score=113.64 Aligned_cols=122 Identities=15% Similarity=0.068 Sum_probs=110.3
Q ss_pred chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 107 ~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
..| +.+|.++...|++++|+..+++++.++|.+..+|+.+|.++..+| ++++|+.+++++++.+|.++.+|+.+|.++
T Consensus 14 ~~~-~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EEL-KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-CYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHH-HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345 578999999999999999999999999999999999999999999 599999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHHhCCCChHHhHHHHHH--HhhcCCccccc
Q psy4772 187 EWMGEPDEELALTAAILAQDAKNYHAWQHRQWV--INLLDDDDRGV 230 (235)
Q Consensus 187 ~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~--l~~l~~~~~~~ 230 (235)
..+|++++|+.++++++.++|.+..+|.+.+.+ +...|+..++.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 137 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 137 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999776666 44445554443
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.63 E-value=5.2e-15 Score=106.25 Aligned_cols=115 Identities=13% Similarity=0.138 Sum_probs=106.2
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
.+.+|+.+|.++...|+++ +|+..|.+++.++|.++.+| +.+|.++...|++++|+..+++++.++|.+..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-----~A~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNID-----DALQCYSEAIKLDPHNHVLY-SNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcccHH-----HHHHHHHHHHHHCCCcHHHH-HHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHH
Confidence 4678999999999999874 79999999999999999999 58999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHH
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVE 187 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~ 187 (235)
.+|.++..+| ++++|+.+++++++.+|.+..+|..++.+..
T Consensus 77 ~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 77 RKAAALEFLN-RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999999999 5999999999999999999999998887653
No 147
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.63 E-value=2.6e-15 Score=122.22 Aligned_cols=153 Identities=8% Similarity=-0.013 Sum_probs=105.9
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc----cc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA----GE 121 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~----~~ 121 (235)
.+++++|+.+|+++++. .++.+++++|.++.. +- .+..+++|+..|.+++ ++.++.++ +.+|.++.. .+
T Consensus 31 ~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g-~~~~~~~A~~~~~~A~--~~g~~~a~-~~Lg~~y~~g~g~~~ 103 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NP-QQADYPQARQLAEKAV--EAGSKSGE-IVLARVLVNRQAGAT 103 (212)
T ss_dssp HTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-ST-TSCCHHHHHHHHHHHH--HTTCHHHH-HHHHHHHTCGGGSSC
T ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CC-CCCCHHHHHHHHHHHH--HCCCHHHH-HHHHHHHHcCCCCcc
Confidence 35677777777777654 577777777777776 31 1123457777777774 35677777 567777766 56
Q ss_pred ccHHHHHHHHHHHHcCC--CChHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc-C----
Q psy4772 122 KSERALALTADAITMNP--ANYTVWQYRREILKA----LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM-G---- 190 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P--~~~~aw~~r~~~l~~----l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l-~---- 190 (235)
++++|+.+++++++..| .++.+++++|.++.. .+ ++++|+.+++++++. |.++.+++++|.++..- |
T Consensus 104 d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~ 181 (212)
T 3rjv_A 104 DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE-DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIE 181 (212)
T ss_dssp CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC-CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBC
T ss_pred CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCC
Confidence 77777777777777777 357777777777777 44 477777777777777 66677777777777553 3
Q ss_pred -CchHHHHHHHHHHHhCC
Q psy4772 191 -EPDEELALTAAILAQDA 207 (235)
Q Consensus 191 -~~~~Al~~~~~ai~ldp 207 (235)
++++|+.++++|++..+
T Consensus 182 ~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 182 PNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp CCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 67777777777777643
No 148
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.62 E-value=7.2e-16 Score=119.45 Aligned_cols=118 Identities=14% Similarity=0.058 Sum_probs=98.9
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh------------------CCCCCchhhHHHHHHHhcccccHHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI------------------APKNESPWNYLRGAVVNAGEKSERAL 127 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l------------------~p~~~~aw~~~~g~il~~~~~~~eAl 127 (235)
.+..+..+|.+++..|+|. +|+..|.++|.+ +|.+..+| +++|.++..+|++++|+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~-----~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYK-----EAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLY-ANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHH-HHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHH
Confidence 4567888888888888774 688888888888 77777888 57899999999999999
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCCh-HHhHHHHHHHHHcC
Q psy4772 128 ALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNY-QVWRHRQIIVEWMG 190 (235)
Q Consensus 128 ~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~-~aw~~r~~~l~~l~ 190 (235)
..++++|+++|.++.+|+.+|.++..+| ++++|+.+++++++++|.+. .+...++.+...++
T Consensus 84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 84 ETSSEVLKREETNEKALFRRAKARIAAW-KLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHh-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 48999999999999999988 56666666665544
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.1e-15 Score=112.33 Aligned_cols=122 Identities=11% Similarity=0.028 Sum_probs=109.6
Q ss_pred HhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC---CchhhHHHHHHHhcccccHHHHHHHHHHHHc
Q psy4772 60 ISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN---ESPWNYLRGAVVNAGEKSERALALTADAITM 136 (235)
Q Consensus 60 L~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~---~~aw~~~~g~il~~~~~~~eAl~~~~~al~l 136 (235)
...+|.++..|+.+|.++...|+++ +|+..|.++++++|++ ..+| +.+|.++...|++++|+..+++++.+
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGDYG-----GALAAYTQALGLDATPQDQAVLH-RNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTCHH-----HHHHHHHHHHTSCCCHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHcccchHHHHHH-HHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 3457888999999999999998874 7999999999999988 8888 68999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH
Q psy4772 137 NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW 188 (235)
Q Consensus 137 ~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~ 188 (235)
+|.+..+|+.+|.++..+| ++++|+.+++++++++|.+..+|..++.+...
T Consensus 95 ~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKLG-RLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp TSCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred CccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999 59999999999999999999999888776543
No 150
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.62 E-value=2e-14 Score=105.99 Aligned_cols=113 Identities=10% Similarity=-0.020 Sum_probs=85.3
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCCh---HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC---hHHhHHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANY---TVWQYRREILKALNKDLHQELKYIGEKIKENSKN---YQVWRHRQI 184 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~---~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n---~~aw~~r~~ 184 (235)
+.+|.++...|++++|+..+++++..+|++. .+++.+|.++..+| ++++|+..++++++.+|++ +.+++.+|.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR-NFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 4677777777777888888888877777777 67777788877777 4788888888888888777 777788888
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 185 IVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 185 ~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
++..+|++++|+..+++++..+|++..+...+..+-.+.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 8888888888888888888888877777666665554433
No 151
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.61 E-value=1.1e-15 Score=133.81 Aligned_cols=179 Identities=9% Similarity=-0.027 Sum_probs=153.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCc-------hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC------chhhHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRN-------NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE------SPWNYL 112 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~-------~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~------~aw~~~ 112 (235)
.|++++|+.++++|+++.++. +.++.++|.++..+|+++ +|+..|.+++.+.|+.. .++ ++
T Consensus 156 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~ 229 (383)
T 3ulq_A 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYE-----DAISHFQKAYSMAEAEKQPQLMGRTL-YN 229 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HH
T ss_pred cCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHcCChHHHHHHH-HH
Confidence 588999999999999995554 468999999999999875 79999999999988776 377 57
Q ss_pred HHHHHhcccccHHHHHHHHHHHH-----cC-CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-----CCCChHHhHH
Q psy4772 113 RGAVVNAGEKSERALALTADAIT-----MN-PANYTVWQYRREILKALNKDLHQELKYIGEKIKE-----NSKNYQVWRH 181 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~-----l~-P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~-----~P~n~~aw~~ 181 (235)
+|.++..+|++++|+.++++++. .+ |..+.+++++|.++..+| ++++|+.++++++++ +|.....+..
T Consensus 230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 308 (383)
T 3ulq_A 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG-KIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999 57 899999999999999999 599999999999998 4555556677
Q ss_pred HHHHHHHcCC---chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 182 RQIIVEWMGE---PDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 182 r~~~l~~l~~---~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
++.++...|+ +.+|+..++++ ...|....++..+|.++..+|+..+|.-.
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~ 361 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAY 361 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888998 78888888877 55566677888899999989988776543
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.61 E-value=7.8e-16 Score=130.74 Aligned_cols=151 Identities=7% Similarity=-0.032 Sum_probs=121.2
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccH
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~ 124 (235)
..|++++|+..++++++++|+++.+|+++|.++..+|+++ +|+..|.+++.++|+++..+. ....... +..
T Consensus 50 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~l~p~~~~~~~-~~~~~~~---~~~ 120 (281)
T 2c2l_A 50 KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYD-----EAIANLQRAYSLAKEQRLNFG-DDIPSAL---RIA 120 (281)
T ss_dssp HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCCCC-SHHHHHH---HHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCccchhhHH-HHHHHHH---HHH
Confidence 3589999999999999999999999999999999999874 799999999999998876542 1212211 333
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc-CCchHHHHHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM-GEPDEELALTAAIL 203 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l-~~~~~Al~~~~~ai 203 (235)
++...........|....+..+++.++ .| .+++|+..++++++.+|.+......++.++... +.++++...|.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 121 KKKRWNSIEERRIHQESELHSYLTRLI--AA-ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHHHHHHHHHTCCCCCCHHHHHHHHHH--HH-HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH--HH-HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444555556678899999999988876 56 489999999999999999998888888777665 66888999999887
Q ss_pred HhCC
Q psy4772 204 AQDA 207 (235)
Q Consensus 204 ~ldp 207 (235)
+..+
T Consensus 198 ~~~~ 201 (281)
T 2c2l_A 198 EKRK 201 (281)
T ss_dssp CTTS
T ss_pred cccc
Confidence 7543
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.60 E-value=3.2e-15 Score=106.57 Aligned_cols=108 Identities=17% Similarity=0.228 Sum_probs=101.9
Q ss_pred cCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCC--
Q psy4772 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPA-- 139 (235)
Q Consensus 62 ~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~-- 139 (235)
++|.++.+|+.+|.++...|+++ +|+..+.++++++|.+..+| +.+|.++...|++++|+.+++++++++|.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~ 74 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYT-----ESIDLFEKAIQLDPEESKYW-LMKGKALYNLERYEEAVDCYNYVINVIEDEY 74 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHH-----HHHHHHHHHHHHCCCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHTSCCTT
T ss_pred CCCCcHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHhCcCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHHhCcccc
Confidence 47999999999999999999874 79999999999999999999 68999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHhCCCCh
Q psy4772 140 NYTVWQYRREILKAL-NKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 140 ~~~aw~~r~~~l~~l-~~~~eeal~~~~~al~~~P~n~ 176 (235)
+..+|..++.++..+ | ++++|+.++++++..+|.+.
T Consensus 75 ~~~~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 75 NKDVWAAKADALRYIEG-KEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CHHHHHHHHHHHTTCSS-CSHHHHHHHHHHGGGCCCCC
T ss_pred hHHHHHHHHHHHHHHhC-CHHHHHHHHHHHhhcccCCC
Confidence 999999999999999 9 49999999999999999864
No 154
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.60 E-value=1.2e-14 Score=123.38 Aligned_cols=154 Identities=6% Similarity=-0.033 Sum_probs=130.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhH-----hh-hHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc------hhhHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSA-----WT-QRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES------PWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a-----~~-~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~------aw~~~~ 113 (235)
.+++++|+..+++++...|..+.. |+ .+|.++...|++ ++|+..+.+++.+.+.... ++ ..+
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~Ai~~~~~al~~~~~~~~~~~~~~~~-~~l 161 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDY-----EYCILELKKLLNQQLTGIDVYQNLYIE-NAI 161 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCH-----HHHHHHHHHHHHTCCCCSCTTHHHHHH-HHH
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCH-----HHHHHHHHHHHHHhcccccHHHHHHHH-HHH
Confidence 478999999999999988887662 32 477777777665 4799999999998776665 57 479
Q ss_pred HHHHhcccccHHHHHHHHHHHH-------cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC------hHHhH
Q psy4772 114 GAVVNAGEKSERALALTADAIT-------MNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN------YQVWR 180 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~-------l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n------~~aw~ 180 (235)
|.++...|++++|+.+++++++ ..|....++++.|.++..+| ++++|+.++++++++.++. ..+++
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999995 33445569999999999999 5999999999999987655 78999
Q ss_pred HHHHHHHHcCC-chHHHHHHHHHHHhC
Q psy4772 181 HRQIIVEWMGE-PDEELALTAAILAQD 206 (235)
Q Consensus 181 ~r~~~l~~l~~-~~~Al~~~~~ai~ld 206 (235)
++|.++..+|+ +++|++++++|+.+-
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999995 599999999998753
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.60 E-value=2.7e-14 Score=121.07 Aligned_cols=153 Identities=7% Similarity=-0.071 Sum_probs=115.3
Q ss_pred hcHHHHHHHHHhHHhcCCCch------hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC------CchhhHHHH
Q psy4772 47 NLFSDELSYIEGLISHDVRNN------SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN------ESPWNYLRG 114 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~------~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~------~~aw~~~~g 114 (235)
++|++|+..+.++++..|... ..++.+|.++...|+++ +|+..+.+++.+.+.. ..++ +.+|
T Consensus 89 ~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~lg 162 (293)
T 2qfc_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYE-----YCILELKKLLNQQLTGIDVYQNLYIE-NAIA 162 (293)
T ss_dssp TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHH-----HHHHHHHHHHTTCCCSSCTTHHHHHH-HHHH
T ss_pred hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHHHhcCCchHHHHHHH-HHHH
Confidence 577888888888888877654 33566777777777664 6888888888776655 3356 4678
Q ss_pred HHHhcccccHHHHHHHHHHH---HcCCCCh----HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC------hHHhHH
Q psy4772 115 AVVNAGEKSERALALTADAI---TMNPANY----TVWQYRREILKALNKDLHQELKYIGEKIKENSKN------YQVWRH 181 (235)
Q Consensus 115 ~il~~~~~~~eAl~~~~~al---~l~P~~~----~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n------~~aw~~ 181 (235)
.++...|++++|+.++++++ +..|... .+++++|.++..+| ++++|+.++++++++.++. ..++++
T Consensus 163 ~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~ 241 (293)
T 2qfc_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCSSHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh-hHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 88888888888888888888 4556533 58888888888888 4888888888888776431 668888
Q ss_pred HHHHHHHcCCchHH-HHHHHHHHHhC
Q psy4772 182 RQIIVEWMGEPDEE-LALTAAILAQD 206 (235)
Q Consensus 182 r~~~l~~l~~~~~A-l~~~~~ai~ld 206 (235)
+|.++..+|++++| ..++++|+.+.
T Consensus 242 lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 242 RGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 88888888888888 67788887653
No 156
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.59 E-value=1.9e-15 Score=129.43 Aligned_cols=178 Identities=10% Similarity=0.004 Sum_probs=143.1
Q ss_pred hcHHHHHHHHHhHHhcCCCc-----------hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC------chh
Q psy4772 47 NLFSDELSYIEGLISHDVRN-----------NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE------SPW 109 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~-----------~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~------~aw 109 (235)
|++.+|..+++++.+..|.. ...+...|.++..+|+++ +|+..|.+++.+.++.. .++
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~a~~~ 79 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLE-----QAKDAYLQEAEAHANNRSLFHAAKAF 79 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45677777777777654421 123444567888888774 79999999999987653 466
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcCCC------ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC------hH
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMNPA------NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN------YQ 177 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~P~------~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n------~~ 177 (235)
..+|.++..+|++++|+.++++++++.+. ...++.++|.++.. | ++++|+.+|++++++.|.. ..
T Consensus 80 -~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g-~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 80 -EQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L-DLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp -HHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 46899999999999999999999998543 25688999999998 8 5999999999999998865 57
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCCh------HHhHHHHHHHhhcCCccccccc
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILAQDAKNY------HAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~------~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
+++++|.++..+|++++|+.++++++.+.|++. .++..++.++..+|+..+|.-.
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 899999999999999999999999999987764 3677788888888887766543
No 157
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.59 E-value=3.1e-14 Score=120.75 Aligned_cols=164 Identities=9% Similarity=0.113 Sum_probs=140.5
Q ss_pred hcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc-----hhhHHHHHHHhcccccHHHHHHHHHHHH
Q psy4772 61 SHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES-----PWNYLRGAVVNAGEKSERALALTADAIT 135 (235)
Q Consensus 61 ~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~-----aw~~~~g~il~~~~~~~eAl~~~~~al~ 135 (235)
..+|+....+..++..+...|+|+ +|++.+.+++...|.... .|.+.+|.++...|++++|+..+++++.
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~y~-----~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 143 (293)
T 2qfc_A 69 YSDIERKKQFKDQVIMLCKQKRYK-----EIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 345677778888999999999874 799999999999887543 2335678888889999999999999998
Q ss_pred cCCCC------hHHHHHHHHHHHHhhHhHHHHHHHHHHHH---HhCCCCh----HHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 136 MNPAN------YTVWQYRREILKALNKDLHQELKYIGEKI---KENSKNY----QVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 136 l~P~~------~~aw~~r~~~l~~l~~~~eeal~~~~~al---~~~P~n~----~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
+.++. ..+++++|.++..+| ++++|+.++++++ +..|.+. .+++++|.++..+|++++|+.+++++
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~y~~~~-~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 144 QQLTGIDVYQNLYIENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp TCCCSSCTTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 76655 569999999999999 5999999999999 6677654 69999999999999999999999999
Q ss_pred HHhCCC------ChHHhHHHHHHHhhcCCccccc
Q psy4772 203 LAQDAK------NYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 203 i~ldp~------n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+.+.++ -..+++++|.++..+|+.++|.
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai 256 (293)
T 2qfc_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEI 256 (293)
T ss_dssp HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 998654 2788999999999999998883
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.59 E-value=9e-15 Score=106.94 Aligned_cols=117 Identities=12% Similarity=0.041 Sum_probs=93.6
Q ss_pred CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC-------hHH
Q psy4772 106 ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN-------YQV 178 (235)
Q Consensus 106 ~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n-------~~a 178 (235)
+.+| +.+|.++...|++++|+..+++++.++|.++.+++.+|.++...| ++++|+.+++++++.+|.+ ..+
T Consensus 4 ~~~~-~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKE-KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG-DYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHH-HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3455 467888888888888888888888888888888888888888888 4888888888888888777 788
Q ss_pred hHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCC
Q psy4772 179 WRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225 (235)
Q Consensus 179 w~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~ 225 (235)
|+.+|.++...|++++|+.++++++.++| +...+..++.+...++.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888 67777777777765543
No 159
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.58 E-value=3.2e-15 Score=109.98 Aligned_cols=104 Identities=11% Similarity=0.116 Sum_probs=75.8
Q ss_pred ccccHHHHHHHHHHHHc---CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHH
Q psy4772 120 GEKSERALALTADAITM---NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEEL 196 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l---~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al 196 (235)
.|++++|+.+|++++++ +|.+..+|+.+|.++..+| ++++|+.+++++++++|+++.+++.+|.++..+|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG-EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777777 5777777777777777777 4777788888887778877777777787777778888888
Q ss_pred HHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 197 ALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 197 ~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
..+++++.++|.++....+...+....+
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 8788888777777777766665554333
No 160
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.58 E-value=3.6e-14 Score=104.62 Aligned_cols=117 Identities=8% Similarity=-0.043 Sum_probs=103.4
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC---
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE---SPWNYLRGAVVNAGEKSERALALTADAITMNPAN--- 140 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~--- 140 (235)
+.+++.+|.++...|+++ +|+..|.+++..+|.++ .+| +.+|.++...|++++|+..+++++..+|++
T Consensus 2 ~~~~~~~a~~~~~~~~~~-----~A~~~~~~~~~~~p~~~~~~~~~-~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYD-----DASQLFLSFLELYPNGVYTPNAL-YWLGESYYATRNFQLAEAQFRDLVSRYPTHDKA 75 (129)
T ss_dssp -CCHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCSSSTTHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH
T ss_pred cHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHCCCCcccHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHCCCCccc
Confidence 457889999999999874 79999999999999999 688 689999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 141 YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 141 ~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
+.+++.+|.++..+| ++++|+..++++++.+|++..+...+..+-...+
T Consensus 76 ~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 76 AGGLLKLGLSQYGEG-KNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 888999999999999 5999999999999999999988877766554443
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.57 E-value=4e-15 Score=135.86 Aligned_cols=126 Identities=14% Similarity=0.054 Sum_probs=113.7
Q ss_pred CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 106 ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 106 ~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
..+| +.+|.++...|++++|+..++++++++|++..+|+++|.++..+| ++++|+.+++++++++|++..+|+++|.+
T Consensus 6 a~~~-~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 6 AEEL-KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-CYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HTTS-SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4566 578999999999999999999999999999999999999999999 59999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHH--HhhcCCcccccccc
Q psy4772 186 VEWMGEPDEELALTAAILAQDAKNYHAWQHRQWV--INLLDDDDRGVLEY 233 (235)
Q Consensus 186 l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~--l~~l~~~~~~~~~~ 233 (235)
+..+|++++|+..++++++++|++..+|.+++.+ +...|+..+|.-.|
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~ 133 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 133 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999998 55556666665443
No 162
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.57 E-value=9.2e-14 Score=112.93 Aligned_cols=157 Identities=7% Similarity=-0.027 Sum_probs=140.6
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc----ccHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE----KSER 125 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~----~~~e 125 (235)
.+|+..|+++.+. .++.+++.+|.++...+++ ++|+..|.+++.. .++.++ +.+|.++.. + ++++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~-----~~A~~~~~~a~~~--g~~~a~-~~lg~~y~~-~g~~~~~~~ 71 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDY-----QKAEYWAQKAAAQ--GDGDAL-ALLAQLKIR-NPQQADYPQ 71 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCH-----HHHHHHHHHHHHT--TCHHHH-HHHHHHTTS-STTSCCHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHc--CCHHHH-HHHHHHHHc-CCCCCCHHH
Confidence 3677888888875 8999999999999998876 4899999999875 588999 689999998 6 8999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHhCC--CChHHhHHHHHHHHH----cCCchHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKA----LNKDLHQELKYIGEKIKENS--KNYQVWRHRQIIVEW----MGEPDEE 195 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~----l~~~~eeal~~~~~al~~~P--~n~~aw~~r~~~l~~----l~~~~~A 195 (235)
|+..|+++++ +.++.+++++|.++.. .+ ++++|+.+++++++..| .++.+++++|.++.. .+++++|
T Consensus 72 A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 72 ARQLAEKAVE--AGSKSGEIVLARVLVNRQAGAT-DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSC-CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcc-CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999965 6899999999999987 55 69999999999999998 469999999999998 8899999
Q ss_pred HHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 196 LALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 196 l~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
+.+|++|+++ |.++.+++++|.++.
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 9999999999 888999999999984
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.54 E-value=2.4e-14 Score=104.57 Aligned_cols=119 Identities=10% Similarity=0.058 Sum_probs=105.9
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC---
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPAN--- 140 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~--- 140 (235)
|+.+.+|+.+|.++...|+++ +|+..+.+++.++|.++.+| +.+|.++...|++++|+.++++++.++|.+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~-----~A~~~~~~a~~~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFD-----TALKHYDKAKELDPTNMTYI-TNQAAVYFEKGDYNKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred ChHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHhcCCccHHHH-HHHHHHHHHhccHHHHHHHHHHHHhhccccchh
Confidence 456788999999999998874 79999999999999999999 589999999999999999999999999888
Q ss_pred ----hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC
Q psy4772 141 ----YTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG 190 (235)
Q Consensus 141 ----~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~ 190 (235)
..+|+.+|.++..+| ++++|+.+++++++.+| +...+..++.+...++
T Consensus 75 ~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEE-KYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 899999999999999 59999999999999999 6888888887776544
No 164
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.54 E-value=2.5e-14 Score=126.58 Aligned_cols=121 Identities=11% Similarity=0.003 Sum_probs=111.1
Q ss_pred chhhHHHHHHHhcccccHHHHHHHHHHHH----------------cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 107 SPWNYLRGAVVNAGEKSERALALTADAIT----------------MNPANYTVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 107 ~aw~~~~g~il~~~~~~~eAl~~~~~al~----------------l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
..| ..+|.++...|++++|+..|+++++ ++|.+..+|+++|.++..++ ++++|+.+++++++
T Consensus 224 ~~~-~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 224 EDL-KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS-DWQGAVDSCLEALE 301 (370)
T ss_dssp HHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred HHH-HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence 346 5789999999999999999999998 88999999999999999999 59999999999999
Q ss_pred hCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcccc
Q psy4772 171 ENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRG 229 (235)
Q Consensus 171 ~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~ 229 (235)
++|.++.+|+.+|.++..+|++++|+..+++|++++|++..++..++.++..+++..++
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877766544
No 165
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.52 E-value=8.6e-15 Score=127.72 Aligned_cols=125 Identities=10% Similarity=0.062 Sum_probs=79.4
Q ss_pred hcHHHHHHHHHhHHhcCCCch-----------------hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchh
Q psy4772 47 NLFSDELSYIEGLISHDVRNN-----------------SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPW 109 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~-----------------~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw 109 (235)
++|++|+..|+++|++.|.+. .+|+++|.++..+|+++ +|+..|.++|+++|++..+|
T Consensus 193 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~-----~A~~~~~~al~~~p~~~~a~ 267 (338)
T 2if4_A 193 EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD-----EAIGHCNIVLTEEEKNPKAL 267 (338)
T ss_dssp SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH-----HHHHHHHHHHHHCTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhCCCCHHHH
Confidence 678999999999999999988 49999999999999985 79999999999999999999
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
+++|.++..+|++++|+.+++++++++|++..++..++.+........+++...|.+++..+|.+..
T Consensus 268 -~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 268 -FRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -HHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 7999999999999999999999999999999999999998766654578899999999999998754
No 166
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.51 E-value=4.3e-14 Score=125.04 Aligned_cols=124 Identities=10% Similarity=0.066 Sum_probs=113.4
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH----------------hCCCCCchhhHHHHHHHhcccccHHHHHHH
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ----------------IAPKNESPWNYLRGAVVNAGEKSERALALT 130 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~----------------l~p~~~~aw~~~~g~il~~~~~~~eAl~~~ 130 (235)
+..|..+|.++...|+++ +|+..|.++|+ ++|.+..+| +++|.++..+|++++|+.++
T Consensus 223 a~~~~~~g~~~~~~g~~~-----~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~-~nla~~~~~~g~~~~A~~~~ 296 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWE-----MAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCV-LNIGACKLKMSDWQGAVDSC 296 (370)
T ss_dssp HHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHH-HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHH-HHHHHHHHhccCHHHHHHHH
Confidence 466889999999999874 79999999998 888889999 58999999999999999999
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHH
Q psy4772 131 ADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELA 197 (235)
Q Consensus 131 ~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~ 197 (235)
+++|+++|+++.+|+.+|.++..++ ++++|+..++++++++|.+..++..++.++..++++.++..
T Consensus 297 ~~al~~~p~~~~a~~~lg~~~~~~g-~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 297 LEALEIDPSNTKALYRRAQGWQGLK-EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 59999999999999999999999999999988888776653
No 167
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.51 E-value=2.1e-14 Score=105.52 Aligned_cols=95 Identities=16% Similarity=0.195 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHh---CCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHH
Q psy4772 90 REIDYCRDKIQI---APKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIG 166 (235)
Q Consensus 90 ~Al~~~~kal~l---~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~ 166 (235)
+|+..|.+++++ +|.++.+| +.+|.++...|++++|+..++++++++|+++.+++++|.++..+| ++++|+..++
T Consensus 8 ~A~~~~~~al~~~~~~p~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~ 85 (117)
T 3k9i_A 8 QAVPYYEKAIASGLQGKDLAECY-LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG-RYEQGVELLL 85 (117)
T ss_dssp CCHHHHHHHHSSCCCHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 466666666666 46666666 466666666677777777777777777777777777777777776 3677777777
Q ss_pred HHHHhCCCChHHhHHHHHHH
Q psy4772 167 EKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 167 ~al~~~P~n~~aw~~r~~~l 186 (235)
++++.+|.++....+...+.
T Consensus 86 ~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 86 KIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHH
Confidence 77777777666555444333
No 168
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.51 E-value=9.3e-15 Score=124.87 Aligned_cols=161 Identities=7% Similarity=-0.030 Sum_probs=141.5
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhh---------------------HHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQ---------------------RYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE 106 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~---------------------~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~ 106 (235)
...+++..+.+++.+.|....+++. .+.++...|+|+ +|.+.|..++...|.+.
T Consensus 62 r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~-----eA~~~l~~~~~~~p~~~ 136 (282)
T 4f3v_A 62 YSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYA-----DAMEALEAAPVAGSEHL 136 (282)
T ss_dssp HTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHH-----HHHHHHTSSCCTTCHHH
T ss_pred HHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhcCCchH
Confidence 4588999999999999999999999 567888899875 79999999999999998
Q ss_pred chhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC--CC-ChHHhHH
Q psy4772 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPAN--YTVWQYRREILKALNKDLHQELKYIGEKIKEN--SK-NYQVWRH 181 (235)
Q Consensus 107 ~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~--~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~--P~-n~~aw~~ 181 (235)
++ +.+|.++...+++++|+..+++++...+.. ..+++++|.++..+| ++++|+.+|++++... |. ...++++
T Consensus 137 -~~-~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG-~~~eAl~~l~~a~~g~~~P~~~~da~~~ 213 (282)
T 4f3v_A 137 -VA-WMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA-LFTEAERRLTEANDSPAGEACARAIAWY 213 (282)
T ss_dssp -HH-HHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSTTTTTTHHHHHHH
T ss_pred -HH-HHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 77 689999999999999999999888764332 458999999999999 5999999999999655 66 6679999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
+|.++.++|+.++|...+++++..+|. ..++..+.
T Consensus 214 ~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 214 LAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 999999999999999999999999999 77665543
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.50 E-value=9.9e-14 Score=109.59 Aligned_cols=160 Identities=10% Similarity=-0.041 Sum_probs=130.7
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH------hCCCCCchhhHHHHHHHhc
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ------IAPKNESPWNYLRGAVVNA 119 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~------l~p~~~~aw~~~~g~il~~ 119 (235)
.|++++|...++.+....+..+.++..+|.++...|+++ +|+..+.+++. ..|....++ ..+|.++..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~l~~~~~~ 78 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFD-----EARASFQALQQQAQKSGDHTAEHRAL-HQVGMVERM 78 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHH-----HHHHHHHHHHHHHHHcCCcHHHHHHH-HHHHHHHHH
Confidence 367889998665555533378899999999999999875 79999999999 555566778 579999999
Q ss_pred ccccHHHHHHHHHHHHc---CC----CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC--Ch----HHhHHHHHHH
Q psy4772 120 GEKSERALALTADAITM---NP----ANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK--NY----QVWRHRQIIV 186 (235)
Q Consensus 120 ~~~~~eAl~~~~~al~l---~P----~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~--n~----~aw~~r~~~l 186 (235)
.|++++|+..+++++.+ .| ....+++++|.++..+| ++++|+.++++++++.+. +. .++..+|.++
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 99999999999999998 34 34668999999999999 599999999999976432 22 3468999999
Q ss_pred HHcCCchHHHHHHHHHHHhCCCChHH
Q psy4772 187 EWMGEPDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 187 ~~l~~~~~Al~~~~~ai~ldp~n~~a 212 (235)
...|++++|+.++++++.+-......
T Consensus 158 ~~~g~~~~A~~~~~~al~~~~~~~~~ 183 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRARDIFAELEDS 183 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999976555444
No 170
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.48 E-value=2.2e-13 Score=115.41 Aligned_cols=157 Identities=8% Similarity=0.081 Sum_probs=128.8
Q ss_pred HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc----h-hhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH-
Q psy4772 69 AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES----P-WNYLRGAVVNAGEKSERALALTADAITMNPANYT- 142 (235)
Q Consensus 69 a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~----a-w~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~- 142 (235)
.+...+..+...|++ ++|+..+.+++...|..+. + |.+.+|.++...+++++|+..+++++.+.++...
T Consensus 77 ~l~~~i~~~~~~~~y-----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~ 151 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRY-----KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHTTCH-----HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred HHHHHHHHHHHHhhH-----HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH
Confidence 344456667777776 4799999999998887765 2 4234788888889999999999999997655433
Q ss_pred -----HHHHHHHHHHHhhHhHHHHHHHHHHHHHh-------CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC-
Q psy4772 143 -----VWQYRREILKALNKDLHQELKYIGEKIKE-------NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN- 209 (235)
Q Consensus 143 -----aw~~r~~~l~~l~~~~eeal~~~~~al~~-------~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n- 209 (235)
+++++|.++..+| ++++|+.+++++++. .|....+++++|.++..+|++++|+.++++++.+.+..
T Consensus 152 ~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~ 230 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp THHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence 7999999999999 599999999999952 23344589999999999999999999999999988666
Q ss_pred -----hHHhHHHHHHHhhcCCc-ccccc
Q psy4772 210 -----YHAWQHRQWVINLLDDD-DRGVL 231 (235)
Q Consensus 210 -----~~aw~~r~~~l~~l~~~-~~~~~ 231 (235)
+.+++++|.++..+|+. .+|.-
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 78999999999999965 66543
No 171
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=1.3e-13 Score=120.63 Aligned_cols=179 Identities=7% Similarity=-0.087 Sum_probs=144.8
Q ss_pred hhcHHHHHHHHHhHHhcCCC-------chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCC------chhhHH
Q psy4772 46 CNLFSDELSYIEGLISHDVR-------NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE------SPWNYL 112 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~-------~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~------~aw~~~ 112 (235)
.|++++|+.++++|+.+.++ .+.++.++|.++..+|+++ +|+..|.+++.+.+... .++ ++
T Consensus 154 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~ 227 (378)
T 3q15_A 154 MKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYD-----KALPHLEAALELAMDIQNDRFIAISL-LN 227 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HH
T ss_pred cCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHHHcCCHHHHHHHH-HH
Confidence 57899999999999998654 3568899999999999875 79999999999755332 466 57
Q ss_pred HHHHHhcccccHHHHHHHHHHHH-----cCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-----CCChHHhHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAIT-----MNPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN-----SKNYQVWRHR 182 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~-----l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-----P~n~~aw~~r 182 (235)
+|.++...|++++|+.++++++. .+|..+.+++++|.++..+| ++++|+.++++++++. |........+
T Consensus 228 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 306 (378)
T 3q15_A 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG-QTQKAFQFIEEGLDHITARSHKFYKELFLFL 306 (378)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCTTCCSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 89999999999999999999999 89999999999999999999 5999999999999984 4444455666
Q ss_pred HHHHHHcCC---chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCccccccc
Q psy4772 183 QIIVEWMGE---PDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 183 ~~~l~~l~~---~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~~~~~~ 232 (235)
+.++...++ +.+|+..+++ ....|....++..+|.++...|+..+|.-.
T Consensus 307 ~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~ 358 (378)
T 3q15_A 307 QAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAF 358 (378)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 666666777 7777777776 334455566777788888888887766543
No 172
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.46 E-value=2.6e-12 Score=116.40 Aligned_cols=172 Identities=8% Similarity=0.028 Sum_probs=134.2
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc-----c
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG-----E 121 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~-----~ 121 (235)
+++++|+.+|++++.. .++.+++++|.++... .......++|+..|.+++.. .++.++ +.+|.++... +
T Consensus 237 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g-~~~~~d~~~A~~~~~~a~~~--~~~~a~-~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQG-LAGAKEPLKALEWYRKSAEQ--GNSDGQ-YYLAHLYDKGAEGVAK 310 (490)
T ss_dssp CCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHT-TTSSCCHHHHHHHHHHHHTT--TCHHHH-HHHHHHHHHCBTTBCC
T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHc--CCHHHH-HHHHHHHHcCCCCCcC
Confidence 4677888888887765 5677888888887761 11112345889999998765 567788 5788888877 7
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh--HhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH----cCCchHH
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALN--KDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW----MGEPDEE 195 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~--~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~----l~~~~~A 195 (235)
++++|+..++++++. .++.+++++|.++...| +++++|+.+++++++. .++.+|+++|.++.. .+++++|
T Consensus 311 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 311 NREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 899999999999886 46788999999988753 2488999999999887 688999999999988 8899999
Q ss_pred HHHHHHHHHhCCCChHHhHHHHHHHhh----cCCccccc
Q psy4772 196 LALTAAILAQDAKNYHAWQHRQWVINL----LDDDDRGV 230 (235)
Q Consensus 196 l~~~~~ai~ldp~n~~aw~~r~~~l~~----l~~~~~~~ 230 (235)
+.++++|++.. ++.+++++|.++.. .++..++.
T Consensus 387 ~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 387 AIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99999998864 68899999999865 55555443
No 173
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.45 E-value=1.5e-12 Score=117.89 Aligned_cols=164 Identities=8% Similarity=-0.035 Sum_probs=140.4
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc---cc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE---KS 123 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~---~~ 123 (235)
+++++|+.+|+++++. .++.+++.+|.++.....-.+...++|+..|.++++.. ++.++ +.+|.++...| ++
T Consensus 273 ~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~-~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 273 KEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQ-ANLGAIYFRLGSEEEH 347 (490)
T ss_dssp CCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--CHHHH-HHHHHHHHHSCCHHHH
T ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--CHHHH-HHHHHHHHhCCCcccH
Confidence 6789999999999875 68899999999998861111123468999999999874 56788 68999998866 78
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH----cCCchHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILKA----LNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW----MGEPDEE 195 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~~----l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~----l~~~~~A 195 (235)
++|+.+|+++++. .++.+++++|.++.. .+ ++++|+.+++++++. .++.+++++|.++.. .+++++|
T Consensus 348 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 348 KKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKK-DEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999999998 689999999999998 56 699999999999986 479999999999998 8999999
Q ss_pred HHHHHHHHHhCC---CChHHhHHHHHHH
Q psy4772 196 LALTAAILAQDA---KNYHAWQHRQWVI 220 (235)
Q Consensus 196 l~~~~~ai~ldp---~n~~aw~~r~~~l 220 (235)
+.+|++|++.+| .++.++.+++.+.
T Consensus 423 ~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 423 WAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 999999999994 4888888776654
No 174
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.44 E-value=2.3e-12 Score=111.81 Aligned_cols=178 Identities=13% Similarity=0.008 Sum_probs=144.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchh-----HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchh-----hHHHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNS-----AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPW-----NYLRGA 115 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~-----a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw-----~~~~g~ 115 (235)
.|++++|+..++++|...|.... ++..+|.++...|+++ +|+..+.+++.+.|.....+ ...+|.
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT-----RSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 47899999999999999887643 6889999999999875 79999999999988776552 135889
Q ss_pred HHhcccccHHHHHHHHHHHHcC--------CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC-----hHHhHHH
Q psy4772 116 VVNAGEKSERALALTADAITMN--------PANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN-----YQVWRHR 182 (235)
Q Consensus 116 il~~~~~~~eAl~~~~~al~l~--------P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n-----~~aw~~r 182 (235)
++...|++++|+..+++++.+. |....++.++|.++...| ++++|..++++++++.|.. ..++..+
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 9999999999999999999875 445678889999999999 5999999999999988863 4678899
Q ss_pred HHHHHHcCCchHHHHHHHHHHHhCC--CChHHhHH-----HHHHHhhcCCcccc
Q psy4772 183 QIIVEWMGEPDEELALTAAILAQDA--KNYHAWQH-----RQWVINLLDDDDRG 229 (235)
Q Consensus 183 ~~~l~~l~~~~~Al~~~~~ai~ldp--~n~~aw~~-----r~~~l~~l~~~~~~ 229 (235)
+.++...|++++|+..+++++.+.+ .+...|.. ++.++...|+..++
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 234 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999998743 33223332 22334456665544
No 175
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.43 E-value=3.7e-12 Score=115.07 Aligned_cols=162 Identities=8% Similarity=-0.044 Sum_probs=133.5
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH-H--hcccccH
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAV-V--NAGEKSE 124 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~i-l--~~~~~~~ 124 (235)
++++|+..|++++...|..+.+++++|.++.... ..+.++++|+..|.++. |.++.++ +.+|.+ + ...++++
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~-~~~~d~~~A~~~~~~aa---~g~~~a~-~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDAT-LGTPDEKTAQALLEKIA---PGYPASW-VSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGG-GSSCCHHHHHHHHHHHG---GGSTHHH-HHHHHHHHHSGGGCCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHc---CCCHHHH-HHHHHHHHhCCCCCCHH
Confidence 8899999999999999999999999999986541 22234568999999988 8999999 689888 4 4578899
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHh---hHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH----cCCchHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKAL---NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW----MGEPDEELA 197 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l---~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~----l~~~~~Al~ 197 (235)
+|+..|+++++. .++.+++++|.++..- .+++++|+.+|++++ |.++.+++++|.++.. ..++++|+.
T Consensus 269 ~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 269 QMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 999999999865 4899999999998843 125899999999998 9999999999988876 347899999
Q ss_pred HHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 198 LTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 198 ~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
+|++|.+ +.++.+.+++|.++.
T Consensus 344 ~~~~Aa~--~g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 344 HLLTAAR--NGQNSADFAIAQLFS 365 (452)
T ss_dssp HHHHHHT--TTCTTHHHHHHHHHH
T ss_pred HHHHHHh--hChHHHHHHHHHHHH
Confidence 9999887 567888899998874
No 176
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.43 E-value=6.2e-13 Score=96.87 Aligned_cols=82 Identities=7% Similarity=0.018 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 125 RALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 125 eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
+|+..++++++.+|.++.+|+.+|.++...| ++++|+.+++++++++|.+..+|+.+|.++...|++++|+..+++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHE-QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555 355555555555555555555555555555555555555555555555
Q ss_pred hCC
Q psy4772 205 QDA 207 (235)
Q Consensus 205 ldp 207 (235)
++|
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 555
No 177
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.40 E-value=4e-12 Score=114.88 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=137.0
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc----ccc
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG----EKS 123 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~----~~~ 123 (235)
..+++..++..+...+|. +++++|.++...|. +.+.++|+..|.++...+|.....+ +.+|.++... +++
T Consensus 160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~--~~~~~~A~~~~~~aa~~g~~~a~~~-~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQ--PEQQAELLKQMEAGVSRGTVTAQRV-DSVARVLGDATLGTPDE 233 (452)
T ss_dssp GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHTCGGGSSCCH
T ss_pred CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCC--cccHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCCCCCH
Confidence 456677778888777766 99999999999762 3356789999999999999999988 5799999776 689
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHH---HhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC-----CchHH
Q psy4772 124 ERALALTADAITMNPANYTVWQYRREILK---ALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG-----EPDEE 195 (235)
Q Consensus 124 ~eAl~~~~~al~l~P~~~~aw~~r~~~l~---~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~-----~~~~A 195 (235)
++|+..|++++ |.++.+++++|.++. ..+ ++++|+.+|+++++. .++.+++++|.++. .| ++++|
T Consensus 234 ~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~-d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 234 KTAQALLEKIA---PGYPASWVSLAQLLYDFPELG-DVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 99999999998 999999999999944 445 699999999999864 59999999999998 55 89999
Q ss_pred HHHHHHHHHhCCCChHHhHHHHHHHhh
Q psy4772 196 LALTAAILAQDAKNYHAWQHRQWVINL 222 (235)
Q Consensus 196 l~~~~~ai~ldp~n~~aw~~r~~~l~~ 222 (235)
+.+|++|+ |.++.+++++|.++..
T Consensus 307 ~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 307 EAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp HHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 99999999 9999999999988854
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.40 E-value=1.2e-12 Score=98.33 Aligned_cols=135 Identities=10% Similarity=0.015 Sum_probs=114.8
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc------hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES------PWNYLRGAVVNAGEKSERALALTADAITMNPAN 140 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~------aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~ 140 (235)
+.++..+|.++...|+++ +|+..+.+++.+.|.... ++ ..+|.++...|++++|+..+++++.+.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFR-----DAVIAHEQRLLIAKEFGDKAAERIAY-SNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHhCCchHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 567889999999998864 789999999998877653 66 478999999999999999999999987664
Q ss_pred ------hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC------ChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 141 ------YTVWQYRREILKALNKDLHQELKYIGEKIKENSK------NYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 141 ------~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~------n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
..+++++|.++..+| ++++|+.+++++++..+. ...++..+|.++...|++++|++++++++.+-.+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 678899999999999 599999999999987432 2568889999999999999999999999987543
No 179
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.9e-13 Score=97.85 Aligned_cols=86 Identities=13% Similarity=0.101 Sum_probs=49.3
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC------hHHhHHHHHH
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN------YQVWRHRQII 185 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n------~~aw~~r~~~ 185 (235)
.+|.++...|++++|+..|+++++++|.++.+|+++|.++..+| ++++|+.+++++++++|++ ..+++.+|.+
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 87 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLG-EYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELA 87 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence 45555555555555666666665555555555555555555555 3555555555555555555 5555555555
Q ss_pred HHHcCCchHHHHH
Q psy4772 186 VEWMGEPDEELAL 198 (235)
Q Consensus 186 l~~l~~~~~Al~~ 198 (235)
+..+|++++|+..
T Consensus 88 ~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 88 QGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHCCCCCSSS
T ss_pred HHHHHhHhhhHhH
Confidence 5555555444433
No 180
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.37 E-value=4e-12 Score=92.53 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 91 EIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 91 Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
|+..|.++++++|.++.+| +.+|.++...|++++|+..+++++.++|.+..+|+.+|.++..+| ++++|+.+++++++
T Consensus 4 a~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLR-FTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG-DRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHH-HHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 4555555555555555555 355555555555555555555555555555555555555555555 35555555555555
Q ss_pred hCC
Q psy4772 171 ENS 173 (235)
Q Consensus 171 ~~P 173 (235)
++|
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 555
No 181
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.36 E-value=4.9e-12 Score=90.40 Aligned_cols=92 Identities=9% Similarity=0.056 Sum_probs=85.3
Q ss_pred ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC------hHHh
Q psy4772 140 NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN------YHAW 213 (235)
Q Consensus 140 ~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n------~~aw 213 (235)
++.+|+.+|.++...| ++++|+.+++++++++|.++.+|+++|.++..+|++++|+..+++++.++|++ ..++
T Consensus 3 ~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQG-LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4678999999999999 59999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhhcCCccccccc
Q psy4772 214 QHRQWVINLLDDDDRGVLE 232 (235)
Q Consensus 214 ~~r~~~l~~l~~~~~~~~~ 232 (235)
+.+|.++..+|....+.-.
T Consensus 82 ~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHhHhhhHhH
Confidence 9999999888877665543
No 182
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=8.9e-12 Score=108.08 Aligned_cols=178 Identities=11% Similarity=0.049 Sum_probs=140.6
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhH------hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCC--------CCchhhH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSA------WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPK--------NESPWNY 111 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a------~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~--------~~~aw~~ 111 (235)
.|++++|+..+++++.+.|..... +.++|.++..+|+++ +|+..+.+++.+.+. ...++ .
T Consensus 66 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~~-~ 139 (373)
T 1hz4_A 66 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQ-----TAWETQEKAFQLINEQHLEQLPMHEFLV-R 139 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCTTSTHHHHHH-H
T ss_pred cCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHhccccCcHHHHHH-H
Confidence 488999999999999988776433 688999999999875 789999999987643 33455 4
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCC-----hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC--ChHHhH----
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPAN-----YTVWQYRREILKALNKDLHQELKYIGEKIKENSK--NYQVWR---- 180 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~-----~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~--n~~aw~---- 180 (235)
.+|.++...|++++|+..+++++.+.|.. ..++..++.++...| ++++|+..+++++.+.+. ....|.
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 218 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG-DLDNARSQLNRLENLLGNGKYHSDWISNAN 218 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhccCcchhHHHHHH
Confidence 68999999999999999999999998763 467889999999999 599999999999987433 322333
Q ss_pred -HHHHHHHHcCCchHHHHHHHHHHHhCCCC----hHHhHHHHHHHhhcCCccccc
Q psy4772 181 -HRQIIVEWMGEPDEELALTAAILAQDAKN----YHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 181 -~r~~~l~~l~~~~~Al~~~~~ai~ldp~n----~~aw~~r~~~l~~l~~~~~~~ 230 (235)
.++.++...|++++|...+++++...|.+ ..++..++.++...|+.+++.
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 273 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 273 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 23455778999999999999999888764 225667777777778766553
No 183
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.34 E-value=1e-11 Score=85.59 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 140 NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWV 219 (235)
Q Consensus 140 ~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~ 219 (235)
+..+|+.+|.++...+ ++++|+.+++++++.+|.+..+|+.+|.++...|++++|+..+++++.++|.+..++.++|.+
T Consensus 8 ~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4556666666666666 366666666666666666666666666666666666666666666666666666666666666
Q ss_pred Hhh
Q psy4772 220 INL 222 (235)
Q Consensus 220 l~~ 222 (235)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 184
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.32 E-value=2.1e-12 Score=91.30 Aligned_cols=92 Identities=12% Similarity=0.078 Sum_probs=71.1
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHc
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMNPANYT-VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~-aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l 189 (235)
+.+|.++...|++++|+..++++++++|.++. +|+.+|.++..+| ++++|+.+++++++++|++..+|.+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG-DWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 35677777788888888888888888888888 8888888888888 4788888888888888888877754
Q ss_pred CCchHHHHHHHHHHHhCCCChH
Q psy4772 190 GEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
+.+.+++.+|++++..+|++..
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHHhccCccccc
Confidence 4456777778877777777653
No 185
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.31 E-value=1.1e-11 Score=85.46 Aligned_cols=83 Identities=14% Similarity=0.274 Sum_probs=58.0
Q ss_pred CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHH
Q psy4772 106 ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQII 185 (235)
Q Consensus 106 ~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~ 185 (235)
..+| +.+|.++...|++++|+..+++++.++|.+..+|+.+|.++..+| ++++|+.+++++++++|.+..++..+|.+
T Consensus 9 ~~~~-~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAW-YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4455 456777777777777777777777777777777777777777777 37777777777777777777777777776
Q ss_pred HHHcC
Q psy4772 186 VEWMG 190 (235)
Q Consensus 186 l~~l~ 190 (235)
+..+|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 65543
No 186
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.26 E-value=3.4e-11 Score=86.08 Aligned_cols=71 Identities=10% Similarity=0.100 Sum_probs=40.6
Q ss_pred CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 137 NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 137 ~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
+|+++.+|+.+|.++..+| ++++|+.+++++++++|.++.+|+.+|.++..+|++++|+..+++++.+.|+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHD-NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4555555555665555555 3555666666666666665556666666665566666666666666555543
No 187
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.24 E-value=2.1e-11 Score=95.99 Aligned_cols=140 Identities=7% Similarity=-0.059 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHhCC-CCCchhhHHHHHHHhcccccHHHHHHHHHHHH------cCCCChHHHHHHHHHHHHhhHhHHH
Q psy4772 88 IQREIDYCRDKIQIAP-KNESPWNYLRGAVVNAGEKSERALALTADAIT------MNPANYTVWQYRREILKALNKDLHQ 160 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p-~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~------l~P~~~~aw~~r~~~l~~l~~~~ee 160 (235)
+++|...+..+.. +| ....++ ..+|.++...|++++|+..+++++. ..|....+++++|.++..+| ++++
T Consensus 8 ~~~A~~~~~~~~~-~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~ 84 (203)
T 3gw4_A 8 YALAERQAQALLA-HPATASGAR-FMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG-NWDA 84 (203)
T ss_dssp HHHHHHHHHHHHT-STTTHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHHHHHHHhcC-ChHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC-CHHH
Confidence 3467775444444 55 566788 5799999999999999999999999 67778889999999999999 5999
Q ss_pred HHHHHHHHHHh---CCC----ChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCC--h----HHhHHHHHHHhhcCCcc
Q psy4772 161 ELKYIGEKIKE---NSK----NYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKN--Y----HAWQHRQWVINLLDDDD 227 (235)
Q Consensus 161 al~~~~~al~~---~P~----n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n--~----~aw~~r~~~l~~l~~~~ 227 (235)
|+.++++++++ .|. ...+++++|.++..+|++++|+..+++++.+.+.. . .++.++|.++..+|+..
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 99999999998 443 35679999999999999999999999999764332 2 23578888888888877
Q ss_pred ccc
Q psy4772 228 RGV 230 (235)
Q Consensus 228 ~~~ 230 (235)
++.
T Consensus 165 ~A~ 167 (203)
T 3gw4_A 165 EAQ 167 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.23 E-value=3.6e-11 Score=85.99 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=37.3
Q ss_pred CCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC
Q psy4772 102 APKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENS 173 (235)
Q Consensus 102 ~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P 173 (235)
+|+++.+| +.+|.++...|++++|+..++++++++|+++.+|+.+|.++..+| ++++|+..+++++++.|
T Consensus 3 ~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTR-YALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLD-RTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred CccCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhhh
Confidence 45555555 345555555555555555555555555555555555555555555 25555555555555544
No 189
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.20 E-value=1.5e-11 Score=86.76 Aligned_cols=92 Identities=13% Similarity=0.174 Sum_probs=77.8
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc-hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHH
Q psy4772 70 WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES-PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148 (235)
Q Consensus 70 ~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~-aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~ 148 (235)
.+.+|.++...|+++ +|+..|.++++++|.++. +| +.+|.++...|++++|+..|+++++++|++..+|.+
T Consensus 3 ~~~~a~~~~~~~~~~-----~A~~~~~~al~~~p~~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIE-----NALQALEEFLQTEPVGKDEAY-YLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-- 74 (99)
T ss_dssp THHHHHHHHHHTCHH-----HHHHHHHHHHHHCSSTHHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--
T ss_pred HHHHHHHHHHcCCHH-----HHHHHHHHHHHHCCCcHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--
Confidence 356788888888764 789999999999999988 88 688999999999999999999999999999988865
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHhCCCCh
Q psy4772 149 EILKALNKDLHQELKYIGEKIKENSKNY 176 (235)
Q Consensus 149 ~~l~~l~~~~eeal~~~~~al~~~P~n~ 176 (235)
+ .+.+++.++++++..+|.+.
T Consensus 75 ------~-~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 ------K-MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp ------H-HHHHHHHHHCCTTHHHHCCS
T ss_pred ------H-HHHHHHHHHHHHhccCcccc
Confidence 3 37888889998888888765
No 190
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=8.1e-11 Score=101.69 Aligned_cols=168 Identities=9% Similarity=-0.012 Sum_probs=139.2
Q ss_pred HHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCC--CCCchhhHHHHHHHhcccccHHHHH
Q psy4772 51 DELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAP--KNESPWNYLRGAVVNAGEKSERALA 128 (235)
Q Consensus 51 ~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p--~~~~aw~~~~g~il~~~~~~~eAl~ 128 (235)
.|+..+++.++..+....++...|.++...|+++ +|+..+.+.|..+| .+..+. .....++..+|+.+.|.+
T Consensus 84 ~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~e-----eAL~~l~~~i~~~~~~~~lea~-~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 84 KNIEELENLLKDKQNSPYELYLLATAQAILGDLD-----KSLETCVEGIDNDEAEGTTELL-LLAIEVALLNNNVSTAST 157 (310)
T ss_dssp TCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHTSSCSTTHHHHH-HHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH-----HHHHHHHHHhccCCCcCcHHHH-HHHHHHHHHCCCHHHHHH
Confidence 3889999999987777888899999999999874 79999999999997 777888 578899999999999999
Q ss_pred HHHHHHHcCCC------ChHHHHHHHHHHHHhh-HhHHHHHHHHHHHHHhCCC--ChHHhHHHHHHHHHcCCchHHHHHH
Q psy4772 129 LTADAITMNPA------NYTVWQYRREILKALN-KDLHQELKYIGEKIKENSK--NYQVWRHRQIIVEWMGEPDEELALT 199 (235)
Q Consensus 129 ~~~~al~l~P~------~~~aw~~r~~~l~~l~-~~~eeal~~~~~al~~~P~--n~~aw~~r~~~l~~l~~~~~Al~~~ 199 (235)
.++++...+|+ ......--+|+....| ..+.+|+..|+++.+..|. +....++ ++.++|++++|...+
T Consensus 158 ~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 158 IFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHH
T ss_pred HHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHH
Confidence 99999999993 3333333355565555 1389999999999999997 3444444 889999999999999
Q ss_pred HHHHHh----------CCCChHHhHHHHHHHhhcCCcc
Q psy4772 200 AAILAQ----------DAKNYHAWQHRQWVINLLDDDD 227 (235)
Q Consensus 200 ~~ai~l----------dp~n~~aw~~r~~~l~~l~~~~ 227 (235)
+.++++ +|+|+.+..++..+-..+|+.+
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a 272 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDT 272 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhChHH
Confidence 988887 5999999999998888888743
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.20 E-value=4.9e-11 Score=105.00 Aligned_cols=160 Identities=8% Similarity=0.014 Sum_probs=133.8
Q ss_pred hhcHHHHHHHHHhHHhcCCCchh-----------------HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCch
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNS-----------------AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESP 108 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~-----------------a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~a 108 (235)
-|+|++|+..|.++++.+|...+ ++.++|.++...|+++ +|++.+.+++.+.+....+
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~-----~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKD-----KLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHH-----HHHHHHHHTHHHHHTSCHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHccch
Confidence 47899999999999999998764 5788999999999874 7999999999988877654
Q ss_pred hh-----HHHHHHHhcccccHHHHHHHHHHHHcCC------CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh------
Q psy4772 109 WN-----YLRGAVVNAGEKSERALALTADAITMNP------ANYTVWQYRREILKALNKDLHQELKYIGEKIKE------ 171 (235)
Q Consensus 109 w~-----~~~g~il~~~~~~~eAl~~~~~al~l~P------~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~------ 171 (235)
.. ..+|.+....|.+++|+..+++++...+ .-..++..+|.++...| .+++|+.++++++..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK-QYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHhccc
Confidence 21 2357777788999999999999997643 33668899999999999 599999999999875
Q ss_pred CCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 172 NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 172 ~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
.|....++...|.++..+|++.+|..++++++.+.+....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 210 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC 210 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC
Confidence 3445679999999999999999999999999987655443
No 192
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=2.6e-10 Score=98.49 Aligned_cols=160 Identities=9% Similarity=-0.001 Sum_probs=133.5
Q ss_pred hhcHHHHHHHHHhHHhcCC--CchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCC-----CCchhhHHHHHHHh
Q psy4772 46 CNLFSDELSYIEGLISHDV--RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPK-----NESPWNYLRGAVVN 118 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P--~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~-----~~~aw~~~~g~il~ 118 (235)
.|++++|+..+.+.|..+| .+.++....+.++..+|+.+ .|...++++.+.+|+ +....+..-+++..
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d-----~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l 187 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVS-----TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKF 187 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhcCccccccchHHHHHHHHHHHHH
Confidence 4899999999999999997 99999999999999999875 799999999999993 44333233354444
Q ss_pred c--ccccHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh----------CCCChHHhHHHHH
Q psy4772 119 A--GEKSERALALTADAITMNPA--NYTVWQYRREILKALNKDLHQELKYIGEKIKE----------NSKNYQVWRHRQI 184 (235)
Q Consensus 119 ~--~~~~~eAl~~~~~al~l~P~--~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~----------~P~n~~aw~~r~~ 184 (235)
. .+++++|+..|++++...|+ .+..+.+ ++..+| ++++|...++.+++. +|+|+.+..+++.
T Consensus 188 ~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g-~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~ 263 (310)
T 3mv2_B 188 ATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQR-NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT 263 (310)
T ss_dssp HHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHT-CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcC-CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence 3 34899999999999999887 3445444 899999 599999999988887 5999999999999
Q ss_pred HHHHcCCchHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 185 IVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216 (235)
Q Consensus 185 ~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r 216 (235)
+...+|+ ++.+++.++...+|+++-.--+.
T Consensus 264 l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 264 LALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp HHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 9999997 88999999999999998765443
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.17 E-value=4.6e-11 Score=89.51 Aligned_cols=122 Identities=11% Similarity=0.116 Sum_probs=105.0
Q ss_pred hhcHHHHHHHHHhHHhcCCCch------hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC------CchhhHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNN------SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN------ESPWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~------~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~------~~aw~~~~ 113 (235)
.+++++|+.++++++.+.|... .++..+|.++..+|+++ +|+..+.+++.+.+.. ..++ +.+
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~a~~~~~~~~~~~~~~~~~-~~l 95 (164)
T 3ro3_A 22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFE-----TASEYYKKTLLLARQLKDRAVEAQSC-YSL 95 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHhCCcHHHHHHH-HHH
Confidence 4789999999999999987755 48999999999999875 7999999999987765 4466 578
Q ss_pred HHHHhcccccHHHHHHHHHHHHcCCC------ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 114 GAVVNAGEKSERALALTADAITMNPA------NYTVWQYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l~P~------~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
|.++...|++++|+..+++++.+.+. ...++..++.++..+| ++++|+.++++++++..+
T Consensus 96 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG-NHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987433 3567889999999999 599999999999987654
No 194
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.14 E-value=1.1e-09 Score=96.36 Aligned_cols=150 Identities=9% Similarity=-0.037 Sum_probs=117.5
Q ss_pred HhHHhcCCCchhHh--hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc---c-c---cHHHH
Q psy4772 57 EGLISHDVRNNSAW--TQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG---E-K---SERAL 127 (235)
Q Consensus 57 ~~aL~~~P~~~~a~--~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~---~-~---~~eAl 127 (235)
+++...-|.+.+|| +.+|.-+...+ +.+...+|+.+|++|++++|+++.+| -.++.++... + . .-+++
T Consensus 184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~--~~~~~~~A~~l~e~Al~lDP~~a~A~-A~la~a~~~~~~~~~~~~~~~~~l 260 (372)
T 3ly7_A 184 ETLQKILPHRGALLTNFYQAHDYLLHG--DDKSLNRASELLGEIVQSSPEFTYAR-AEKALVDIVRHSQHPLDEKQLAAL 260 (372)
T ss_dssp HHHHHHSCSSGGGHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHhccCCCchhhHHHH
Confidence 34556689998888 56777666653 45678899999999999999999999 4666666421 1 1 11111
Q ss_pred H-HHH--HHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 128 A-LTA--DAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 128 ~-~~~--~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
. .+. .++..+|..+.++.-.+.++...| ++++|+..+++++.++| +..+|..+|+++...|++++|++.|++|+.
T Consensus 261 ~~a~~a~~a~~~~~~~a~~~~alal~~l~~g-d~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 261 NTEIDNIVTLPELNNLSIIYQIKAVSALVKG-KTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1 122 234678999998888888887778 59999999999999997 578999999999999999999999999999
Q ss_pred hCCCChH
Q psy4772 205 QDAKNYH 211 (235)
Q Consensus 205 ldp~n~~ 211 (235)
++|....
T Consensus 339 L~P~~~t 345 (372)
T 3ly7_A 339 LRPGANT 345 (372)
T ss_dssp HSCSHHH
T ss_pred cCCCcCh
Confidence 9998864
No 195
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.12 E-value=1.2e-09 Score=109.39 Aligned_cols=132 Identities=10% Similarity=0.031 Sum_probs=102.1
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCC----
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPA---- 139 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~---- 139 (235)
...+.+|+.+|.++...|++. +|+..|.++ +++.+| ...|.++.+.|++++|++++..+.+..|.
T Consensus 1102 vn~p~vWsqLAKAql~~G~~k-----EAIdsYiKA-----dD~say-~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Id 1170 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVK-----EAIDSYIKA-----DDPSSY-MEVVQAANTSGNWEELVKYLQMARKKARESYVE 1170 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHH-----HHHHHHHhc-----CChHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhccccccc
Confidence 467899999999999988874 788888775 788888 68889999999999999999887765533
Q ss_pred -----------------------ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHH
Q psy4772 140 -----------------------NYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEEL 196 (235)
Q Consensus 140 -----------------------~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al 196 (235)
+...|...|..+...| .+++|+.+|+++ ..|..++.++.++|++++|+
T Consensus 1171 t~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg-~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1171 TELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK-MYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHH
Confidence 2345666777777777 478888888885 47888888888888888888
Q ss_pred HHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 197 ALTAAILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 197 ~~~~~ai~ldp~n~~aw~~r~~~l 220 (235)
+++++| ++..+|...+.++
T Consensus 1242 EaarKA-----~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1242 DGARKA-----NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHh-----CCHHHHHHHHHHH
Confidence 888888 5557776555544
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.11 E-value=3.8e-09 Score=80.04 Aligned_cols=121 Identities=7% Similarity=0.020 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHH----hhHhHHH
Q psy4772 85 PEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKA----LNKDLHQ 160 (235)
Q Consensus 85 e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~----l~~~~ee 160 (235)
+.++++|+..|.++.+.. ++.+. +|.++...+..++|+..|+++++. .++.+++++|.++.. .+ ++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a~---lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~-d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFGC---LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKK-DLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHH---HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC-CHHH
T ss_pred ccCHHHHHHHHHHHHcCC--CHhhh---HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCc-cHHH
Confidence 456778889999998877 44444 788888888888899999999987 788999999999988 44 6899
Q ss_pred HHHHHHHHHHhCCCChHHhHHHHHHHHH----cCCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 161 ELKYIGEKIKENSKNYQVWRHRQIIVEW----MGEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 161 al~~~~~al~~~P~n~~aw~~r~~~l~~----l~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
|+.+++++.+. .++.+++++|.++.. .+++++|+.++++|++. .+..+..+++
T Consensus 80 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 80 AAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 99999999887 789999999999988 88999999999999987 4455554443
No 197
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.09 E-value=2.8e-10 Score=102.67 Aligned_cols=130 Identities=8% Similarity=-0.065 Sum_probs=88.6
Q ss_pred hHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHH
Q psy4772 68 SAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYR 147 (235)
Q Consensus 68 ~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r 147 (235)
.+|.+.|..+...|+++ +|...|.++ ..| .++|.++..+|++++|++++.++ .++..|...
T Consensus 123 ~a~~~IGd~~~~~g~ye-----eA~~~Y~~a--------~n~-~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v 183 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYD-----AAKLLYNNV--------SNF-GRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEV 183 (449)
T ss_dssp --------------CTT-----THHHHHHHT--------TCH-HHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHH-----HHHHHHHHh--------hhH-HHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHH
Confidence 46666666666666665 577777765 456 46777777777777787777777 467777777
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 148 REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 148 ~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
..++..+| +|+.|..+... |..+|++.. .+..++.+.|++++++.++++++.+++.+...|..++.++.
T Consensus 184 ~~aCv~~~-ef~lA~~~~l~-L~~~ad~l~---~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ 252 (449)
T 1b89_A 184 CFACVDGK-EFRLAQMCGLH-IVVHADELE---ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHTT-CHHHHHHTTTT-TTTCHHHHH---HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcC-cHHHHHHHHHH-HHhCHhhHH---HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 77777777 47777666664 335555533 36677899999999999999999999999999999998874
No 198
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.07 E-value=1.8e-09 Score=108.21 Aligned_cols=152 Identities=10% Similarity=0.094 Sum_probs=124.4
Q ss_pred hhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCC--------------------
Q psy4772 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPK-------------------- 104 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~-------------------- 104 (235)
..|++++|+.+|.+| +++++|...|.++...|+++ +|++++..+.+..+.
T Consensus 1117 ~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyE-----EAIeyL~mArk~~~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWE-----ELVKYLQMARKKARESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred hCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHH
Confidence 357889999998776 88889999999999888874 567777666655433
Q ss_pred -------CCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 105 -------NESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 105 -------~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
+...| ...|..+...|++++|+.+|.++ ..|..++.++.++|+ +++|+++++++ ++..
T Consensus 1187 e~fI~~~n~ad~-~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge-~q~AIEaarKA-----~n~~ 1251 (1630)
T 1xi4_A 1187 EEFINGPNNAHI-QQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE-YQAAVDGARKA-----NSTR 1251 (1630)
T ss_pred HHHHhCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCC-HHHHHHHHHHh-----CCHH
Confidence 23456 46899999999999999999996 589999999999995 99999999998 4445
Q ss_pred HhH------------------------------HHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 178 VWR------------------------------HRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 178 aw~------------------------------~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
+|. .++..+...|.+++|+.++++++.++|.+...|..++.++.
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 554 44556778899999999999999999999999999998874
No 199
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.07 E-value=5.8e-09 Score=99.06 Aligned_cols=170 Identities=10% Similarity=0.015 Sum_probs=143.0
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHH-HHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREI-DYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALA 128 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al-~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~ 128 (235)
+.....|+++|...|.+++.|...+..+...|..+ +|. ..|.+++...|.+...| ...+.+....|..++|..
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~-----~a~r~il~rAi~~~P~s~~Lw-l~~a~~ee~~~~~e~aR~ 399 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDS-----TVITKYLKLGQQCIPNSAVLA-FSLSEQYELNTKIPEIET 399 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCT-----THHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhCCHHHHHH
Confidence 44567899999999999999999999999888765 576 99999999999999888 567788888899999999
Q ss_pred HHHHHHHc-----------CCC-----------ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-CCCChHHhHHHHHH
Q psy4772 129 LTADAITM-----------NPA-----------NYTVWQYRREILKALNKDLHQELKYIGEKIKE-NSKNYQVWRHRQII 185 (235)
Q Consensus 129 ~~~~al~l-----------~P~-----------~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~-~P~n~~aw~~r~~~ 185 (235)
.|++++.. .|. ...+|.....+..+.+ ..+.|...+.+|++. .+.....|...+.+
T Consensus 400 iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~-~l~~AR~vf~~A~~~~~~~~~~lyi~~A~l 478 (679)
T 4e6h_A 400 TILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ-GLAASRKIFGKCRRLKKLVTPDIYLENAYI 478 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHTGGGSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 99999975 253 4568998888888888 489999999999998 55678888888877
Q ss_pred HHHcCC-chHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCc
Q psy4772 186 VEWMGE-PDEELALTAAILAQDAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 186 l~~l~~-~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~ 226 (235)
-.+.++ ++.|...|+++++..|++...|...+..+...|+.
T Consensus 479 E~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 479 EYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH
Confidence 777765 89999999999999999999996655555555554
No 200
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.96 E-value=1.6e-10 Score=104.25 Aligned_cols=191 Identities=8% Similarity=0.120 Sum_probs=142.8
Q ss_pred ccchhhhhccCCCCCCCCCCchhHhhhh-hhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHH
Q psy4772 16 YKNREEWKDLRPIPQDDGPTPVVAIAYS-QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDY 94 (235)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~ 94 (235)
|..-+++.++.-+-..|+...+..++-. -..|.|++|..+|.++ +.|..+|.++.++|+|. +|++.
T Consensus 104 Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq-----~AVea 170 (449)
T 1b89_A 104 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQ-----AAVDG 170 (449)
T ss_dssp -----CHHHHTTTTTCC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHH-----HHHHH
T ss_pred HHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHH-----HHHHH
Confidence 4434466666666666554444444433 2347899999999977 69999999999999985 79999
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC
Q psy4772 95 CRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK 174 (235)
Q Consensus 95 ~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~ 174 (235)
+.++ .++..| ...+.+....|+++.|..+... |..+|++.. ....+|.+.| .+++++.++++++.+++.
T Consensus 171 ~~KA-----~~~~~W-k~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~---~lv~~Yek~G-~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 171 ARKA-----NSTRTW-KEVCFACVDGKEFRLAQMCGLH-IVVHADELE---ELINYYQDRG-YFEELITMLEAALGLERA 239 (449)
T ss_dssp HHHH-----TCHHHH-HHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHH---HHHHHHHHTT-CHHHHHHHHHHHTTSTTC
T ss_pred HHHc-----CCchhH-HHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHH---HHHHHHHHCC-CHHHHHHHHHHHhCCcHH
Confidence 9999 478899 4677888889999999887776 447777644 4667788899 499999999999999999
Q ss_pred ChHHhHHHHHHHHH--cCCchHHHHHHHHHHHhCC-----CChHHhHHHHHHHhhcCCccccc
Q psy4772 175 NYQVWRHRQIIVEW--MGEPDEELALTAAILAQDA-----KNYHAWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 175 n~~aw~~r~~~l~~--l~~~~~Al~~~~~ai~ldp-----~n~~aw~~r~~~l~~l~~~~~~~ 230 (235)
+...|..++.++.+ .++..+.++.|.+.+.+.| .+++.|....+++..-|..+.|.
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 99999999999855 5578899999999999999 99999999999887777765543
No 201
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.94 E-value=8.8e-09 Score=90.72 Aligned_cols=127 Identities=6% Similarity=0.019 Sum_probs=101.8
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcC---CCCHHHH---HHHHHHHHHHHHhCCCCCchhhHHHHHHHhcc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTT---QFTPEVI---QREIDYCRDKIQIAPKNESPWNYLRGAVVNAG 120 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~---~~~e~~~---~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~ 120 (235)
..+.+|+.+|++||+++|+++.+|..+++++.... ....... ..|+. -..++..+|..+.++ ...+.++...
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~-a~~a~~~~~~~a~~~-~alal~~l~~ 290 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID-NIVTLPELNNLSIIY-QIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHHTCGGGTTCHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-HHHhcccCCcCHHHH-HHHHHHHHhC
Confidence 35699999999999999999999999999886321 1222222 22222 113447789999888 4677777778
Q ss_pred cccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 121 EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 121 ~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
|++++|+..+++++.++|. ..+|..+|+++.-.| ++++|++.+++|++++|....
T Consensus 291 gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G-~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKG-MNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSCSHHH
T ss_pred CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCcCh
Confidence 9999999999999999985 788899999999999 599999999999999998764
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.91 E-value=2.2e-08 Score=75.85 Aligned_cols=120 Identities=9% Similarity=0.015 Sum_probs=99.9
Q ss_pred hcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc----ccc
Q psy4772 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNA----GEK 122 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~----~~~ 122 (235)
.++++|+.+|+++.+..+ +.+. +|.++...+.. ++|+..|.++... .++.++ +.+|.++.. .++
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~-----~~A~~~~~~Aa~~--g~~~a~-~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINK-----QKLFQYLSKACEL--NSGNGC-RFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCH-----HHHHHHHHHHHHT--TCHHHH-HHHHHHHHHCSSSCCC
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCH-----HHHHHHHHHHHcC--CCHHHH-HHHHHHHHcCCCCCcc
Confidence 467999999999999874 4444 99888776544 3699999999987 688898 689999988 688
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHH----hhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKA----LNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~----l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
+++|+..|+++++. .++.+++++|.++.. .+ ++++|+.+++++.+. .+..+..+++
T Consensus 77 ~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~-d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 77 LRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVK-NEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCc-CHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 99999999999997 789999999999998 55 699999999999997 4555555443
No 203
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.83 E-value=2.6e-08 Score=94.64 Aligned_cols=174 Identities=8% Similarity=-0.058 Sum_probs=138.3
Q ss_pred hcHHHHH-HHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh-----------CCC----------
Q psy4772 47 NLFSDEL-SYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI-----------APK---------- 104 (235)
Q Consensus 47 ~~~~~Al-~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l-----------~p~---------- 104 (235)
++.++|. ..|++|+..+|++...|...+.+....|+++ +|...|.+++.. .|.
T Consensus 357 ~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e-----~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIP-----EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 3446787 9999999999999999999999999988753 677888888865 253
Q ss_pred -CCchhhHHHHHHHhcccccHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHH
Q psy4772 105 -NESPWNYLRGAVVNAGEKSERALALTADAITM-NPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHR 182 (235)
Q Consensus 105 -~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l-~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r 182 (235)
...+| .....+..+.|..+.|...|.+|+.. .+....+|...+.+-.+++++.+.|...|+++++..|+++..|...
T Consensus 432 ~~~~vW-i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y 510 (679)
T 4e6h_A 432 KLTYVY-CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKY 510 (679)
T ss_dssp HHHHHH-HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 34478 45556666778899999999999998 5555777777676666665447999999999999999999999988
Q ss_pred HHHHHHcCCchHHHHHHHHHHHhCC---CChHHhHHHHHHHhhcCCc
Q psy4772 183 QIIVEWMGEPDEELALTAAILAQDA---KNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 183 ~~~l~~l~~~~~Al~~~~~ai~ldp---~n~~aw~~r~~~l~~l~~~ 226 (235)
+..+...|+.+.|...|++|+...| +....|......-...|..
T Consensus 511 ~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~ 557 (679)
T 4e6h_A 511 LDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL 557 (679)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 8888899999999999999999988 3555666554444455544
No 204
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.82 E-value=5.9e-08 Score=82.69 Aligned_cols=159 Identities=12% Similarity=0.050 Sum_probs=107.7
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCC-CCH---------------HHHHHHHHH-------HHHHHH-----
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQ-FTP---------------EVIQREIDY-------CRDKIQ----- 100 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~-~~e---------------~~~~~Al~~-------~~kal~----- 100 (235)
+--.+.+++-.|..+|++......-|..+..-+. |.+ ....+|... ..++|.
T Consensus 48 ~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~ 127 (301)
T 3u64_A 48 LPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPG 127 (301)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4667889999999999998888777766554321 111 012223333 333333
Q ss_pred -------------------hCCCCCchhhHHHHHHHhc-----------ccccHHHHHHHHHHHHcCCC--ChHHHHHHH
Q psy4772 101 -------------------IAPKNESPWNYLRGAVVNA-----------GEKSERALALTADAITMNPA--NYTVWQYRR 148 (235)
Q Consensus 101 -------------------l~p~~~~aw~~~~g~il~~-----------~~~~~eAl~~~~~al~l~P~--~~~aw~~r~ 148 (235)
.+|+++.++ +=.|.+... ++...+|....+++++++|+ +..+|..+|
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~~~dve~L-~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG 206 (301)
T 3u64_A 128 FTREVFSGDEQRLHKVLSRCTRVDVGTL-YWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLT 206 (301)
T ss_dssp HHHHHTSSCHHHHHHHHTTCCGGGHHHH-HHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHhcchhhHHHHHHHcCccccHHH-HHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHH
Confidence 233334433 223333321 12357888888888888888 556888888
Q ss_pred HHHHHh-----hHhHHHHHHHHHHHHHhCCC-ChHHhHHHHHHHHH-cCCchHHHHHHHHHHHhCCCC
Q psy4772 149 EILKAL-----NKDLHQELKYIGEKIKENSK-NYQVWRHRQIIVEW-MGEPDEELALTAAILAQDAKN 209 (235)
Q Consensus 149 ~~l~~l-----~~~~eeal~~~~~al~~~P~-n~~aw~~r~~~l~~-l~~~~~Al~~~~~ai~ldp~n 209 (235)
.+|..+ | +.++|..+|+++|+++|+ +..+++..|..+.. .|+++++...+++|+..+|+.
T Consensus 207 ~lY~~vPp~~gG-d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 207 KFYAAAPESFGG-GMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHSCTTTTC-CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHhCCCccCC-CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 888885 6 578888888888888886 48888888888866 488888888888888888774
No 205
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.77 E-value=2.2e-08 Score=87.87 Aligned_cols=158 Identities=7% Similarity=-0.020 Sum_probs=126.9
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCch-----------------hhHHHHHHHhcccccHHHHHH
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESP-----------------WNYLRGAVVNAGEKSERALAL 129 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~a-----------------w~~~~g~il~~~~~~~eAl~~ 129 (235)
|.+....|.-+...|+|. +|++.|.+++...|....+ . ..+|.++...|++++|++.
T Consensus 4 p~~~l~~a~~l~~~~~y~-----eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al-~~l~~~y~~~~~~~~a~~~ 77 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYN-----EAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSI-LELGQLYVTMGAKDKLREF 77 (434)
T ss_dssp TTHHHHHHHHHHHHTCHH-----HHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHH-HHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHH-----HHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHH-HHHHHHHHHCCCHHHHHHH
Confidence 455666777788888774 7999999999999998753 5 4689999999999999999
Q ss_pred HHHHHHcCCCChHHH------HHHHHHHHHhhHhHHHHHHHHHHHHHhCCC------ChHHhHHHHHHHHHcCCchHHHH
Q psy4772 130 TADAITMNPANYTVW------QYRREILKALNKDLHQELKYIGEKIKENSK------NYQVWRHRQIIVEWMGEPDEELA 197 (235)
Q Consensus 130 ~~~al~l~P~~~~aw------~~r~~~l~~l~~~~eeal~~~~~al~~~P~------n~~aw~~r~~~l~~l~~~~~Al~ 197 (235)
+.+++.+.+....+. ...+.++...| .+++++.++++++...+. -..++..+|.++...|++.+|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (434)
T 4b4t_Q 78 IPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPD-SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA 156 (434)
T ss_dssp HHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCS-CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence 999999887766543 33455555556 489999999999875443 35688999999999999999999
Q ss_pred HHHHHHHh------CCCChHHhHHHHHHHhhcCCcccccc
Q psy4772 198 LTAAILAQ------DAKNYHAWQHRQWVINLLDDDDRGVL 231 (235)
Q Consensus 198 ~~~~ai~l------dp~n~~aw~~r~~~l~~l~~~~~~~~ 231 (235)
.++.++.. .|....++...+.++..+|+..++.-
T Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 196 (434)
T 4b4t_Q 157 LINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKA 196 (434)
T ss_dssp HHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHH
Confidence 99999875 45556788889999988888766643
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.76 E-value=3.6e-08 Score=70.06 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=62.7
Q ss_pred CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChH
Q psy4772 63 DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYT 142 (235)
Q Consensus 63 ~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~ 142 (235)
+|+++++|..+|.+++..+.-. ...+|...+.++|+++|+++.++ +.+|.+....|++++|+..++++++.+|..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~--~~~~A~~~l~~AL~~dp~~~rA~-~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQA--MTDEVSLLLEQALQLEPYNEAAL-SLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTC--CCHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHCcCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 6889999999999887554310 12478889999999999999999 57899999999999999999999999988433
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.76 E-value=5.3e-08 Score=75.40 Aligned_cols=95 Identities=8% Similarity=-0.017 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhC-C-CChHHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNK--DLHQELKYIGEKIKEN-S-KNYQVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~--~~eeal~~~~~al~~~-P-~n~~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
+.+.|.+.+..+|.+.++.++.++++.+... +..+++..++.+++.+ | ++..++|+++..+.++|+|++|+.++++
T Consensus 17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3344444444555555555555555555330 2445555555555555 4 4455555555555555555555555555
Q ss_pred HHHhCCCChHHhHHHHHHH
Q psy4772 202 ILAQDAKNYHAWQHRQWVI 220 (235)
Q Consensus 202 ai~ldp~n~~aw~~r~~~l 220 (235)
+++++|+|..|..-+..+-
T Consensus 97 lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 97 LLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHCTTCHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHH
Confidence 5555555555554444443
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.75 E-value=9.1e-08 Score=74.06 Aligned_cols=99 Identities=11% Similarity=0.094 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc---ccHHHHHHHHHHHHcC-C-CChHHHHHHHHHHHHhhHhHHH
Q psy4772 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE---KSERALALTADAITMN-P-ANYTVWQYRREILKALNKDLHQ 160 (235)
Q Consensus 86 ~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~---~~~eAl~~~~~al~l~-P-~~~~aw~~r~~~l~~l~~~~ee 160 (235)
+.++.+.+.|.+.+..+|.+..+. ++.|+++...+ ..++++..++.+++.+ | ....++++++..+.+++ ++++
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~-F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~-~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQ-FEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK-EYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHH-HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc-CHHH
Confidence 344455555666666666555665 55666665544 4456666666666666 5 45666666666666666 3666
Q ss_pred HHHHHHHHHHhCCCChHHhHHHHHHH
Q psy4772 161 ELKYIGEKIKENSKNYQVWRHRQIIV 186 (235)
Q Consensus 161 al~~~~~al~~~P~n~~aw~~r~~~l 186 (235)
|+.+++++|+++|.|.+|..-+..+-
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 66666666666666666665554443
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.67 E-value=1.2e-07 Score=67.36 Aligned_cols=72 Identities=11% Similarity=-0.062 Sum_probs=35.3
Q ss_pred CCCChHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 137 NPANYTVWQYRREILKALNK--DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 137 ~P~~~~aw~~r~~~l~~l~~--~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
+|+++.+|..+|.++...+. ..++|...++++++++|+++.+++.+|.++...|+|.+|+..++++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34455555555555433321 1244555555555555555555555555555555555555555555555554
No 210
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.61 E-value=2.2e-07 Score=66.83 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-------CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhH
Q psy4772 142 TVWQYRREILKALNKDLHQELKYIGEKIKEN-------SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQ 214 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-------P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~ 214 (235)
...+..|..+.+.+ +|..|+.++++|+++. +....++.++|.++.++|++++|+..+++|+.++|++..+..
T Consensus 6 ~dc~~lG~~~~~~~-~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 6 EDCFELGKVAYTEA-DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHcc-chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 34555666666666 4666666666666643 344566777777777777777777777777777777777777
Q ss_pred HHHHHHhhc
Q psy4772 215 HRQWVINLL 223 (235)
Q Consensus 215 ~r~~~l~~l 223 (235)
+++++-..+
T Consensus 85 n~~~~~~~~ 93 (104)
T 2v5f_A 85 NLKYFEYIM 93 (104)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 776554443
No 211
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.47 E-value=2.4e-07 Score=84.81 Aligned_cols=127 Identities=10% Similarity=0.056 Sum_probs=93.9
Q ss_pred hhcHHHHHHHHHhHHhc--------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh-----CCCCC---chh
Q psy4772 46 CNLFSDELSYIEGLISH--------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI-----APKNE---SPW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l-----~p~~~---~aw 109 (235)
.|+|++|+.+++++|++ +|.-+..+.++|.++..+|+|+ +|+..+.++|.+ -|+|+ ..+
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~-----eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYE-----EASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 47899999999999987 5556788899999999999875 577777777754 45555 355
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHc-----CCCCh---HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHh
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITM-----NPANY---TVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVW 179 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l-----~P~~~---~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw 179 (235)
+++|.++..+|++++|+..+++|+++ -|+++ .....++.++..+++ +.+|...|.++.+..-+|-..|
T Consensus 397 -~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~-~~~ae~~~~~~~~~~~~~~~~~ 472 (490)
T 3n71_A 397 -MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM-FRQNEFMYHKMREAALNNQPMQ 472 (490)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTC----
T ss_pred -HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCc
Confidence 46889999999999999999999863 45554 455677778888884 8888888888766554444344
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.44 E-value=6.8e-07 Score=76.17 Aligned_cols=113 Identities=9% Similarity=-0.019 Sum_probs=94.8
Q ss_pred hcCCCchhHhhhHHHHHhh---c--CCC-CHHHHHHHHHHHHHHHHhCCC--CCchhhHHHHHHHhcc-----cccHHHH
Q psy4772 61 SHDVRNNSAWTQRYFVINH---T--TQF-TPEVIQREIDYCRDKIQIAPK--NESPWNYLRGAVVNAG-----EKSERAL 127 (235)
Q Consensus 61 ~~~P~~~~a~~~~g~~l~~---~--~~~-~e~~~~~Al~~~~kal~l~p~--~~~aw~~~~g~il~~~-----~~~~eAl 127 (235)
+++|+++++++-.|.+... . |.+ .-+...+|....+++++++|+ +..+|. .+|.++... |..++|.
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~-~LG~lY~~vPp~~gGd~ekA~ 224 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWN-VLTKFYAAAPESFGGGMEKAH 224 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHH-HHHHHHHHSCTTTTCCHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHH-HHHHHHHhCCCccCCCHHHHH
Confidence 3477788888888877754 2 222 235677899999999999999 778995 699999884 8999999
Q ss_pred HHHHHHHHcCCCC-hHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHhCCCC
Q psy4772 128 ALTADAITMNPAN-YTVWQYRREILKAL-NKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 128 ~~~~~al~l~P~~-~~aw~~r~~~l~~l-~~~~eeal~~~~~al~~~P~n 175 (235)
.+|+++|+++|+. ..+++..+..+... + +.+++...+++++..+|..
T Consensus 225 ~~ferAL~LnP~~~id~~v~YA~~l~~~~g-d~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 225 TAFEHLTRYCSAHDPDHHITYADALCIPLN-NRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHCCTTCSHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCCCC
Confidence 9999999999975 99999999999885 6 5899999999999988874
No 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.38 E-value=2.3e-06 Score=61.41 Aligned_cols=74 Identities=11% Similarity=0.075 Sum_probs=53.9
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHcC-------CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 111 YLRGAVVNAGEKSERALALTADAITMN-------PANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183 (235)
Q Consensus 111 ~~~g~il~~~~~~~eAl~~~~~al~l~-------P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~ 183 (235)
+.+|..+...++++.|+..+++|+... +....++.+.|.++.++| ++++|+..++++++++|.+..+..+++
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-DLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 456777777777777777777777753 345667777788888887 478888888888888888877777766
Q ss_pred HH
Q psy4772 184 II 185 (235)
Q Consensus 184 ~~ 185 (235)
.+
T Consensus 88 ~~ 89 (104)
T 2v5f_A 88 YF 89 (104)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 214
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.37 E-value=2.1e-05 Score=71.76 Aligned_cols=164 Identities=8% Similarity=-0.071 Sum_probs=104.6
Q ss_pred HHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHH
Q psy4772 50 SDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALAL 129 (235)
Q Consensus 50 ~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~ 129 (235)
+.....|+++|...|..+..|...+..+...|+. ++|...|.+++.. |.+...| ...+... +.+. ....
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~-----~~ar~i~erAi~~-P~~~~l~-~~y~~~~-e~~~---~~~~ 264 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQK-----EKAKKVVERGIEM-SDGMFLS-LYYGLVM-DEEA---VYGD 264 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHH-CCSSHHH-HHHHHHT-TCTH---HHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHhC-CCcHHHH-HHHHhhc-chhH---HHHH
Confidence 4467899999999999999999999988887764 4789999999999 9998888 4443331 1111 1111
Q ss_pred HHHHH----------HcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcC-CchHHHHH
Q psy4772 130 TADAI----------TMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMG-EPDEELAL 198 (235)
Q Consensus 130 ~~~al----------~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~-~~~~Al~~ 198 (235)
...+. ...+....+|..-.....+.+ ..+.|...++++ +..+..++.|...+.+-..++ +.+.|...
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~-~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR-GLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC-CHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 11110 011222355666666555555 367777777777 433345666766666555555 47777777
Q ss_pred HHHHHHhCCCChHHhHHHHHHHhhcCCc
Q psy4772 199 TAAILAQDAKNYHAWQHRQWVINLLDDD 226 (235)
Q Consensus 199 ~~~ai~ldp~n~~aw~~r~~~l~~l~~~ 226 (235)
++.++..-|+++..|.-.......+|+.
T Consensus 343 fe~al~~~~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 343 FSSGLLKHPDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence 7777777777776655444433444443
No 215
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.30 E-value=7.6e-07 Score=81.49 Aligned_cols=123 Identities=8% Similarity=-0.056 Sum_probs=83.5
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHh-----CCCCC---chhhHHHHHHHhcccccHHHHHHHHHHHHc--------CCCC
Q psy4772 77 INHTTQFTPEVIQREIDYCRDKIQI-----APKNE---SPWNYLRGAVVNAGEKSERALALTADAITM--------NPAN 140 (235)
Q Consensus 77 l~~~~~~~e~~~~~Al~~~~kal~l-----~p~~~---~aw~~~~g~il~~~~~~~eAl~~~~~al~l--------~P~~ 140 (235)
+..+|+| ++|+..+.++|.+ .|+|+ ..+ .++|.++..+|++++|+..++++|.+ .|.-
T Consensus 319 ~~~qg~~-----~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~-~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 319 ARSEGLY-----HEVVKLCRECLEKQEPVFADTNLYVLRLL-SIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHTTTCH-----HHHHHHHHHHHHHHTTTBCTTSHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHhCCCH-----HHHHHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 4455655 3677777777764 34444 345 35777888888888888888888864 3444
Q ss_pred hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-----CCCChH---HhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 141 YTVWQYRREILKALNKDLHQELKYIGEKIKE-----NSKNYQ---VWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 141 ~~aw~~r~~~l~~l~~~~eeal~~~~~al~~-----~P~n~~---aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
...++++|.+|..+|+ +++|+..+++|+++ -|+++. ....++.+...++.+.+|...|.++.+.-
T Consensus 393 a~~l~nLa~~~~~~G~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGH-IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888884 88888888888763 344443 44566677777777888888777775533
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.29 E-value=1.8e-06 Score=77.87 Aligned_cols=94 Identities=11% Similarity=0.030 Sum_probs=78.7
Q ss_pred hcccccHHHHHHHHHHHHc-----CCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh--------CCCChHHhHH
Q psy4772 118 NAGEKSERALALTADAITM-----NPAN---YTVWQYRREILKALNKDLHQELKYIGEKIKE--------NSKNYQVWRH 181 (235)
Q Consensus 118 ~~~~~~~eAl~~~~~al~l-----~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~--------~P~n~~aw~~ 181 (235)
...|++++|+..++++|++ -|++ ...+++++.+|..+| +|++|+.++++++++ +|.-..++++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ-DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 3467899999999999984 4555 457889999999999 499999999999974 4445568999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHh-----CCCChHH
Q psy4772 182 RQIIVEWMGEPDEELALTAAILAQ-----DAKNYHA 212 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~l-----dp~n~~a 212 (235)
+|.++..+|++++|+..+++|+++ -|+++..
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999999875 4666654
No 217
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.24 E-value=0.00012 Score=66.67 Aligned_cols=165 Identities=7% Similarity=-0.042 Sum_probs=105.8
Q ss_pred HHHHHHHHHhHHhcCCC-chhHhhhHHHHHhhcC-CCCH-HHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 49 FSDELSYIEGLISHDVR-NNSAWTQRYFVINHTT-QFTP-EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~-~~~a~~~~g~~l~~~~-~~~e-~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
+..|...++.+....|. +...|......-...+ ...+ ...++....|+++|...|..+..| +..+..+...|+.++
T Consensus 153 y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW-~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 153 FQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVY-FFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHH-HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHHcCCHHH
Confidence 34455566666665444 4456644222211111 1221 123456689999999999999999 677788888899999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-------------CCCChHHhHHHHHHHHHcCCc
Q psy4772 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKE-------------NSKNYQVWRHRQIIVEWMGEP 192 (235)
Q Consensus 126 Al~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~-------------~P~n~~aw~~r~~~l~~l~~~ 192 (235)
|...+++++.. |.+...|...+... .+++. ++++.+. .+.....|...+....+.+..
T Consensus 232 ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~ 302 (493)
T 2uy1_A 232 AKKVVERGIEM-SDGMFLSLYYGLVM-DEEAV-------YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493)
T ss_dssp HHHHHHHHHHH-CCSSHHHHHHHHHT-TCTHH-------HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHhhc-chhHH-------HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence 99999999999 99998888654431 12211 2222211 122346788888888888889
Q ss_pred hHHHHHHHHHHHhCCCChHHhHHHHHHHhhcC
Q psy4772 193 DEELALTAAILAQDAKNYHAWQHRQWVINLLD 224 (235)
Q Consensus 193 ~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~ 224 (235)
+.|...|++| ...+...+.|...+.+-..++
T Consensus 303 ~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 303 ELFRKLFIEL-GNEGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp HHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-hCCCCChHHHHHHHHHHHHHC
Confidence 9999999999 433345566655444433344
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.06 E-value=8.2e-06 Score=73.33 Aligned_cols=97 Identities=13% Similarity=0.011 Sum_probs=79.1
Q ss_pred HhcccccHHHHHHHHHHHHc-----CCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-----CCCh---HHhH
Q psy4772 117 VNAGEKSERALALTADAITM-----NPAN---YTVWQYRREILKALNKDLHQELKYIGEKIKEN-----SKNY---QVWR 180 (235)
Q Consensus 117 l~~~~~~~eAl~~~~~al~l-----~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-----P~n~---~aw~ 180 (235)
+...|++++|+..++++|.+ -|++ ...+++++.++..+| +|++|+.+++++|++. |.++ ..++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g-~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG-LLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34568999999999999975 3444 457889999999999 4999999999999742 4444 5899
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHh-----CCCChHHhH
Q psy4772 181 HRQIIVEWMGEPDEELALTAAILAQ-----DAKNYHAWQ 214 (235)
Q Consensus 181 ~r~~~l~~l~~~~~Al~~~~~ai~l-----dp~n~~aw~ 214 (235)
++|.++..+|++++|+..+++|+++ -|+++..-.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 9999999999999999999999874 466665543
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.03 E-value=3.5e-06 Score=75.90 Aligned_cols=84 Identities=17% Similarity=0.037 Sum_probs=54.4
Q ss_pred hhcHHHHHHHHHhHHhc--------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh-----CCCCC---chh
Q psy4772 46 CNLFSDELSYIEGLISH--------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI-----APKNE---SPW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l-----~p~~~---~aw 109 (235)
+|+|++|+.+++++|++ +|.-+..+.++|.++..+|+|+ +|+..+.++|.+ -|+|+ ..+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~-----eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWE-----GALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHH-----HHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 46789999999999885 3344566677777777777664 566666666643 33333 344
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHH
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAIT 135 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~ 135 (235)
+++|.++..+|++++|+..+++|++
T Consensus 386 -~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 386 -LKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3566666666666666666666665
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.02 E-value=6.8e-05 Score=55.97 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhH
Q psy4772 143 VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWR 180 (235)
Q Consensus 143 aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~ 180 (235)
..++++..+.++| +|++|+.+++.+|+.+|.|.+|..
T Consensus 76 ~lY~LAvg~yklg-~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 76 YVFYLAVGNYRLK-EYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhh-hHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3333444444444 244444444444444444444333
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.01 E-value=5.4e-05 Score=56.54 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=87.2
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhC-C-CCCchhhHHHHHHHhcccccHHH
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIA-P-KNESPWNYLRGAVVNAGEKSERA 126 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~-p-~~~~aw~~~~g~il~~~~~~~eA 126 (235)
...+...|...+..++.+..+-++.+|++..... ...++++|..+..++..+ | ..-.+. |.+|..+.++|+|.+|
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~--~~d~~~GI~lLe~l~~~~~p~~~Rd~l-Y~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY--NDDIRKGIVLLEELLPKGSKEEQRDYV-FYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS--HHHHHHHHHHHHHHTTTSCHHHHHHHH-HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHhhhHHHH
Confidence 4566777788888899999999999999999654 356778999999999987 5 344555 7889999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhh
Q psy4772 127 LALTADAITMNPANYTVWQYRREILKALN 155 (235)
Q Consensus 127 l~~~~~al~l~P~~~~aw~~r~~~l~~l~ 155 (235)
+.+++.+|++.|.+.+|..-+..|-.++.
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~ 122 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERLIDKAMK 122 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999888777766553
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.79 E-value=2.2e-05 Score=70.58 Aligned_cols=85 Identities=8% Similarity=-0.015 Sum_probs=64.4
Q ss_pred hhcHHHHHHHHHhHHhc--------CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHh-----CCCCCc---hh
Q psy4772 46 CNLFSDELSYIEGLISH--------DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQI-----APKNES---PW 109 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~--------~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l-----~p~~~~---aw 109 (235)
.|+|++|+..++++|+. +|.-...+.++|.++..+|+++ +|+..+.++|.+ -|+++. .+
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~-----eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLE-----EALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHH-----HHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 36889999999999976 4444677888888888888774 677777777753 355553 45
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHc
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITM 136 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l 136 (235)
+++|.++..+|++++|+..+++|+++
T Consensus 375 -~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 375 -MKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 46888888888888888888888863
No 223
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.57 E-value=0.0029 Score=48.02 Aligned_cols=89 Identities=8% Similarity=-0.064 Sum_probs=69.8
Q ss_pred CCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHH
Q psy4772 64 VRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTV 143 (235)
Q Consensus 64 P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~a 143 (235)
+-.+.+-++.+|+|..... ....+++|..+..++.-+|..-.-..|.++..+.++|+|.+|+.+.+.+|++.|.|.+|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~--~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTD--VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 6678888999999988764 34567899999999998886554333778888888889999999999999999998888
Q ss_pred HHHHHHHHHHh
Q psy4772 144 WQYRREILKAL 154 (235)
Q Consensus 144 w~~r~~~l~~l 154 (235)
..-+..|-.++
T Consensus 114 ~~Lk~~Ie~~i 124 (144)
T 1y8m_A 114 GALKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666665544
No 224
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.55 E-value=0.0014 Score=49.72 Aligned_cols=83 Identities=13% Similarity=0.008 Sum_probs=58.6
Q ss_pred CCChHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCC-CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhH
Q psy4772 138 PANYTVWQYRREILKALNK--DLHQELKYIGEKIKENS-KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQ 214 (235)
Q Consensus 138 P~~~~aw~~r~~~l~~l~~--~~eeal~~~~~al~~~P-~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~ 214 (235)
+-..++-++.+|++.+-.. +..+++..++.+++..| ..-...++++..+.++|+|.+|+.+++..++++|.|..|-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 5566677777777766531 34567777777777777 45567777777788888888888888888888888877765
Q ss_pred HHHHHH
Q psy4772 215 HRQWVI 220 (235)
Q Consensus 215 ~r~~~l 220 (235)
-+..+-
T Consensus 116 Lk~~Ie 121 (144)
T 1y8m_A 116 LKSMVE 121 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.49 E-value=0.0011 Score=50.95 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=80.7
Q ss_pred HhCCCCCchhhHHHHHHHhccccc------HHHHHHHHHHHHcCCCC--------hHHHHHHHHHHHHhhHhHHHHHHHH
Q psy4772 100 QIAPKNESPWNYLRGAVVNAGEKS------ERALALTADAITMNPAN--------YTVWQYRREILKALNKDLHQELKYI 165 (235)
Q Consensus 100 ~l~p~~~~aw~~~~g~il~~~~~~------~eAl~~~~~al~l~P~~--------~~aw~~r~~~l~~l~~~~eeal~~~ 165 (235)
.+.|++|..|. .-...+.+.|.. ++-++.|++|+..-|-. ...|..-+ .+..++ +.++|...|
T Consensus 7 ~~~p~~yd~W~-~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~-D~d~aR~vy 83 (161)
T 4h7y_A 7 MMMANNPEDWL-SLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQ-EPDDARDYF 83 (161)
T ss_dssp ---CCSHHHHH-HHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHH-CGGGCHHHH
T ss_pred eeCCCCHHHHH-HHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhc-CHHHHHHHH
Confidence 45777777774 333555555665 67777888888766653 22333333 224454 578889999
Q ss_pred HHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHH
Q psy4772 166 GEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQH 215 (235)
Q Consensus 166 ~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~ 215 (235)
+.++..+.+....|...+..-.+.|+...|...+.+||.+-|+.......
T Consensus 84 ~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 84 QMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 99988888888888888888899999999999999999999988776543
No 226
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.49 E-value=0.00099 Score=49.99 Aligned_cols=87 Identities=8% Similarity=-0.056 Sum_probs=68.1
Q ss_pred chhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCC-CchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHH
Q psy4772 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN-ESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVW 144 (235)
Q Consensus 66 ~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~-~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw 144 (235)
.+.+-++.+|++.+... .....++|..+..++..+|.. -..+ |.++..+.++|+|.+|+.+.+.+|++.|+|.+|.
T Consensus 39 s~qt~F~yAw~Lv~S~~--~~d~~~GI~LLe~l~~~~~~~~Rd~L-YyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTD--VNDERLGVKILTDIYKEAESRRRECL-YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp CHHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred ChhhHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCcchhHHHH-HHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 56778888888888754 345678888888888888744 4455 6788888888888888888888888888888888
Q ss_pred HHHHHHHHHhh
Q psy4772 145 QYRREILKALN 155 (235)
Q Consensus 145 ~~r~~~l~~l~ 155 (235)
.-+..|-.++.
T Consensus 116 ~Lk~~Ie~ki~ 126 (134)
T 3o48_A 116 ALKSMVEDKIQ 126 (134)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766665
No 227
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.39 E-value=0.021 Score=51.93 Aligned_cols=163 Identities=9% Similarity=0.013 Sum_probs=122.3
Q ss_pred hhhcHHHHHHHHHhHHhcC-CCchhHhhhHHHHHhhcCCCC----HHHHHHHHHHHHHHHHhCCC-CCchhhHHHHHHHh
Q psy4772 45 KCNLFSDELSYIEGLISHD-VRNNSAWTQRYFVINHTTQFT----PEVIQREIDYCRDKIQIAPK-NESPWNYLRGAVVN 118 (235)
Q Consensus 45 ~~~~~~~Al~~~~~aL~~~-P~~~~a~~~~g~~l~~~~~~~----e~~~~~Al~~~~kal~l~p~-~~~aw~~~~g~il~ 118 (235)
..|++++|+++|++..+.. +-+...|..+-.++...++.. ...+++|++.|.......-. +...|+ .+-..+.
T Consensus 38 k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn-~lI~~~~ 116 (501)
T 4g26_A 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT-NGARLAV 116 (501)
T ss_dssp TSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH-HHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH-HHHHHHH
Confidence 3589999999999988763 235556666655555555432 24577899999987765322 334554 3446778
Q ss_pred cccccHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC-CChHHhHHHHHHHHHcCCchHHH
Q psy4772 119 AGEKSERALALTADAITMN-PANYTVWQYRREILKALNKDLHQELKYIGEKIKENS-KNYQVWRHRQIIVEWMGEPDEEL 196 (235)
Q Consensus 119 ~~~~~~eAl~~~~~al~l~-P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P-~n~~aw~~r~~~l~~l~~~~~Al 196 (235)
+.|+.++|+..++...+.. +-+...|+..-..+-+.| ++++|...+++..+..- -+...|+.+..++.+.|+.++|.
T Consensus 117 ~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~ 195 (501)
T 4g26_A 117 AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG-DADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVY 195 (501)
T ss_dssp HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHH
Confidence 8899999999999988763 336677888888888888 59999999999887532 36778999999999999999999
Q ss_pred HHHHHHHH--hCCCC
Q psy4772 197 ALTAAILA--QDAKN 209 (235)
Q Consensus 197 ~~~~~ai~--ldp~n 209 (235)
+.+++.-+ ..|+.
T Consensus 196 ~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 196 KTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHHHHHHHHTSSBCH
T ss_pred HHHHHHHHhCCCcCH
Confidence 99999866 44543
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.31 E-value=0.00089 Score=50.25 Aligned_cols=76 Identities=12% Similarity=-0.000 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCC-CChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHH
Q psy4772 142 TVWQYRREILKALNK--DLHQELKYIGEKIKENS-KNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217 (235)
Q Consensus 142 ~aw~~r~~~l~~l~~--~~eeal~~~~~al~~~P-~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~ 217 (235)
.+-++.+|++.+-.. +..+++..++.+++.+| ..-..+++++..+.++|+|++|+.+++.+++++|.|..|-.-+.
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 344444444444321 22344445555554444 22344555555555555555555555555555555554443333
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.025 Score=54.14 Aligned_cols=116 Identities=12% Similarity=0.201 Sum_probs=78.3
Q ss_pred cHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH--------hCCCCCc----------hh
Q psy4772 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ--------IAPKNES----------PW 109 (235)
Q Consensus 48 ~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~--------l~p~~~~----------aw 109 (235)
.++.|+.++++..+.+|.....+..............| -+|+.....+++ +.+.+.. ..
T Consensus 264 ~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~E---v~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL 340 (754)
T 4gns_B 264 LVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKE---LDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLL 340 (754)
T ss_dssp GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGH---HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHH
Confidence 36889999999999999886544333222222222222 246666666553 2333321 22
Q ss_pred hHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q psy4772 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEK 168 (235)
Q Consensus 110 ~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~a 168 (235)
...+..+...|+++-||.+-++|+..-|.....|..++.||..+| +|+.||-.+...
T Consensus 341 -~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~-d~e~ALLtLNSc 397 (754)
T 4gns_B 341 -NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKE-EYEKALFAINSM 397 (754)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT-CHHHHHHHHHHS
T ss_pred -HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhc-cHHHHHHHHhcC
Confidence 123344556789999999999999999999999999999999999 599998766543
No 230
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.20 E-value=0.34 Score=43.94 Aligned_cols=153 Identities=9% Similarity=0.056 Sum_probs=108.3
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCC-CCchhhHHHHHHHhc---------ccccHHHHHHHHHHHHcC-C
Q psy4772 70 WTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPK-NESPWNYLRGAVVNA---------GEKSERALALTADAITMN-P 138 (235)
Q Consensus 70 ~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~-~~~aw~~~~g~il~~---------~~~~~eAl~~~~~al~l~-P 138 (235)
+...-....+.|+. ++|++.|+...+..-. +...||..+ .++.. .+..++|++.|++..... +
T Consensus 29 l~~~id~c~k~G~~-----~~A~~lf~~M~~~Gv~pd~~tyn~Li-~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~ 102 (501)
T 4g26_A 29 LKQKLDMCSKKGDV-----LEALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV 102 (501)
T ss_dssp HHHHHHHTTTSCCH-----HHHHHHHHHHHHHTCCCCHHHHHHHH-HHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCH-----HHHHHHHHHHHHcCCCCCHhHHHHHH-HHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC
Confidence 33333445566654 5899999988875321 223343222 22222 234689999999888764 3
Q ss_pred CChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-CCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC-ChHHhHHH
Q psy4772 139 ANYTVWQYRREILKALNKDLHQELKYIGEKIKEN-SKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK-NYHAWQHR 216 (235)
Q Consensus 139 ~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~-n~~aw~~r 216 (235)
-+...|+..-..+-+.| .+++|+..+++..+.. +-+..+|+.+...+.+.|+.++|.+.++...+..-. |..+|..+
T Consensus 103 Pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 103 PNEATFTNGARLAVAKD-DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp CCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 36678888888899999 5999999999988753 347889999999999999999999999999885432 55667777
Q ss_pred HHHHhhcCCcccc
Q psy4772 217 QWVINLLDDDDRG 229 (235)
Q Consensus 217 ~~~l~~l~~~~~~ 229 (235)
-.++...|+.+++
T Consensus 182 i~~~~~~g~~d~A 194 (501)
T 4g26_A 182 LKVSMDTKNADKV 194 (501)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHhhCCCHHHH
Confidence 6666666665554
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.13 E-value=0.076 Score=40.69 Aligned_cols=120 Identities=10% Similarity=0.057 Sum_probs=89.7
Q ss_pred HhcCCCchhHhhhHHHHHhhcCCC-CHHHHHHHHHHHHHHHHhCCCCCc-hhhHH------HHHHHhcccccHHHHHHHH
Q psy4772 60 ISHDVRNNSAWTQRYFVINHTTQF-TPEVIQREIDYCRDKIQIAPKNES-PWNYL------RGAVVNAGEKSERALALTA 131 (235)
Q Consensus 60 L~~~P~~~~a~~~~g~~l~~~~~~-~e~~~~~Al~~~~kal~l~p~~~~-aw~~~------~g~il~~~~~~~eAl~~~~ 131 (235)
|-+.|.+++.|..-...+...|.- .+..+++-++.|.+|+..-|-... .| -+ +-..+...++.++|-+.|+
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~w-rrYI~LWIrYA~~~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQN-ESFARIQVRFAELKAIQEPDDARDYFQ 84 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTC-HHHHHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccH-HHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 346899999999999888877753 234556777889998887765432 22 11 1123455688999999999
Q ss_pred HHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHH
Q psy4772 132 DAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRH 181 (235)
Q Consensus 132 ~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~ 181 (235)
.++.+..+++.+|...+..-.+.| .+..|.+.+.++|..-|+.-+....
T Consensus 85 ~a~~~hKkFAKiwi~~AqFEiRqg-nl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 85 MARANCKKFAFVHISFAQFELSQG-NVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHHHHCTTBHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHhccCCCcHHHHHH
Confidence 999999999888888888888888 5999999999999999998665443
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.06 Score=51.48 Aligned_cols=112 Identities=11% Similarity=0.173 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHH--Hhcc-cccHHHHHHHHHHHH--------cCCCCh----------HHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAV--VNAG-EKSERALALTADAIT--------MNPANY----------TVWQY 146 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~i--l~~~-~~~~eAl~~~~~al~--------l~P~~~----------~aw~~ 146 (235)
++.|++.+.+....+|...... .+..+ +... .+--+|+....+++. +.+.+. ..++.
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~--~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~ 342 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYY--KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI 342 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHH--HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence 4579999999999999775433 22122 2222 334566666666653 233332 23444
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 147 RREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 147 r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
-+..+..-| +++-|+.+-++++..-|..+..|+.++.+|..+|+++.|+-.+...
T Consensus 343 Qa~FLl~K~-~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRG-DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccC-cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 455555556 5999999999999999999999999999999999999999765554
No 233
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.13 E-value=0.11 Score=47.43 Aligned_cols=74 Identities=15% Similarity=0.041 Sum_probs=63.1
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHh
Q psy4772 147 RREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVIN 221 (235)
Q Consensus 147 r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~ 221 (235)
+|.+..... .+..|..+|.+|+.++|.+...++++|.+....|+.-+|+=+|-|++....-++.|+.++..++.
T Consensus 158 LGDL~RY~~-~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 158 LGDIARYRN-QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred cccHHHHHH-HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 333333333 36889999999999999999999999999999999999999999999988889999999998884
No 234
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.30 E-value=0.21 Score=45.49 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=46.8
Q ss_pred HHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHH
Q psy4772 113 RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW 188 (235)
Q Consensus 113 ~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~ 188 (235)
+|.+..-.+.+..|..+|.+|+.++|++..+++++|.+...-+ +.-+++-+|-+++....-.+.|+.++..++.+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~-~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG-DHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT-CHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccc-ccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4555555555666677777777777777777777776666655 35556666666666555566666666665543
No 235
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.60 E-value=0.16 Score=39.33 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=66.1
Q ss_pred hhcHHHHHHHHHhHHhcCCCchh---------HhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCC---CCCchhhHHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNS---------AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAP---KNESPWNYLR 113 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~---------a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p---~~~~aw~~~~ 113 (235)
.+.|+.|+...+.++.+...+++ ++...|.+++..++|. +|+..|.++|+..- ++..+.. ..
T Consensus 33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyr-----rA~~~y~qALq~~k~l~k~~s~~~-~~ 106 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYR-----NAVSKYTMALQQKKALSKTSKVRP-ST 106 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHCC-----------
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHH-----HHHHHHHHHHHHHHHHhcCCCccc-cc
Confidence 36789999999998888655554 7899999999999885 78888888876321 1111100 00
Q ss_pred HHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q psy4772 114 GAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEK 168 (235)
Q Consensus 114 g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~a 168 (235)
| ....+.. ... .+...+.-+..+.|+.++++ +.+|+..++.+
T Consensus 107 ~----~~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~-~~~Ai~~Le~I 148 (167)
T 3ffl_A 107 G----NSASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQ-DKDAIAILDGI 148 (167)
T ss_dssp ---------------------C-CCCHHHHHHHHHHHHHHTTC-HHHHHHHHHTS
T ss_pred c----ccCCCcc-------ccc-ccchHHHHHHHHHHHHHHCC-HHHHHHHHhcC
Confidence 0 0000000 011 24456777888999999995 89999988763
No 236
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.44 E-value=0.56 Score=36.30 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=21.1
Q ss_pred HHhHHHHHHHHHcCCchHHHHHHHH
Q psy4772 177 QVWRHRQIIVEWMGEPDEELALTAA 201 (235)
Q Consensus 177 ~aw~~r~~~l~~l~~~~~Al~~~~~ 201 (235)
..-+..+.++..++++.+|+...+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 5668889999999999999988664
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.72 E-value=0.51 Score=41.28 Aligned_cols=56 Identities=9% Similarity=0.026 Sum_probs=48.6
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHH
Q psy4772 146 YRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202 (235)
Q Consensus 146 ~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~a 202 (235)
.+...+..+| .+.+++..+.+++..+|-+-.+|..+..++.+.|+..+|+..|++.
T Consensus 176 ~~~~~~l~~g-~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACG-RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455566677 4899999999999999999999999999999999999999888776
No 238
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.26 E-value=3.7 Score=32.20 Aligned_cols=94 Identities=13% Similarity=0.040 Sum_probs=65.3
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH--h---------------CCC
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK--E---------------NSK 174 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~--~---------------~P~ 174 (235)
..+.++.-.|.|..+|-.. .+-+-.++.++...|+..++ ++..|+.+++.+|+ . ||.
T Consensus 38 L~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klK-dYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKK-DYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 3566777777776666432 33445667778888888887 58888888888883 2 233
Q ss_pred ChH-HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 175 NYQ-VWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 175 n~~-aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
+-. -++.+|.++...|..+||+..+......+|-...
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 333 3445677788888899999998888888876544
No 239
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.81 E-value=4.4 Score=31.81 Aligned_cols=117 Identities=6% Similarity=0.029 Sum_probs=78.4
Q ss_pred hhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHH
Q psy4772 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125 (235)
Q Consensus 46 ~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~e 125 (235)
+.+|+.++-.-.-.+..+| +--...+++++..|+|. +++-.+ .+-+..++- +....|+..+.+|..
T Consensus 15 Y~dYdt~~fLsa~L~~~~~---eY~lL~~I~LyyngEY~-----R~Lf~L-----~~lNT~Ts~-YYk~LCy~klKdYkk 80 (242)
T 3kae_A 15 YRDYETAIFLAACLLPCKP---EYRMLMSIVLYLNGEYT-----RALFHL-----HKLNTCTSK-YYESLCYKKKKDYKK 80 (242)
T ss_dssp TTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCHH-----HHHHHH-----HTCCBHHHH-HHHHHHHHHTTCHHH
T ss_pred cccccHHHHHHHHHccCCh---HHHhhhhhhhhhcchHh-----HHHHHH-----HhcchHHHH-HHHHHHHHHHHHHHH
Confidence 3566777654444444444 44456788999999874 343321 122333444 457899999999999
Q ss_pred HHHHHHHHHH-----------------cCCCChHHHH-HHHHHHHHhhHhHHHHHHHHHHHHHhCCCChH
Q psy4772 126 ALALTADAIT-----------------MNPANYTVWQ-YRREILKALNKDLHQELKYIGEKIKENSKNYQ 177 (235)
Q Consensus 126 Al~~~~~al~-----------------l~P~~~~aw~-~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~ 177 (235)
|+.+.+++|+ .||.+-.-.. -.|.++..+| .-+||+.++.+....+|-.+.
T Consensus 81 A~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g-~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 81 AIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSG-YREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhc-CHHHhhhHhhhhcCCccccch
Confidence 9999999993 3455655444 4588888888 589999999999888875443
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.09 E-value=3.1 Score=34.66 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCChHHH-HHHHHHHHHhhHhHHHHHHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVW-QYRREILKALNKDLHQELKYIG 166 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw-~~r~~~l~~l~~~~eeal~~~~ 166 (235)
+++|++.+...++.+|.+...=. .+-.++.-.|+++.|++..+.+.+++|+....- .+|..|.-..-+ .+ -+-.
T Consensus 13 L~~al~~~~~~VR~~P~da~~R~-~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R--~~--vfaG 87 (273)
T 1zbp_A 13 LQQALELLIEAIKASPKDASLRS-SFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR--KD--FAQG 87 (273)
T ss_dssp HHHHHHHHHHHHHTCTTCHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH--HH--HTTS
T ss_pred HHHHHHHHHHHHHhCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH--HH--HHcC
Confidence 45677777888888888876542 344666777888888888888888888876654 334433322211 00 0000
Q ss_pred HHHHhCCCChHHhHH---HHHHHHHcCCchHHHHHHHHHHHhCCCChH
Q psy4772 167 EKIKENSKNYQVWRH---RQIIVEWMGEPDEELALTAAILAQDAKNYH 211 (235)
Q Consensus 167 ~al~~~P~n~~aw~~---r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~ 211 (235)
+..=.-+..+..|.. .+......|+.++|...-..|++.-|...-
T Consensus 88 ~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 88 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 000112233334443 345556678888888888888887765543
No 241
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.98 E-value=2.4 Score=35.32 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=29.1
Q ss_pred cccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 119 AGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 119 ~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
+.|..++++......++.+|.+...-.....+|--.| +|+.|+.=++.+.+++|..
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G-~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDG-DFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCGGG
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCchh
Confidence 3445555555555555555555555444444444445 3555555555555555544
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.16 E-value=5.6 Score=39.60 Aligned_cols=102 Identities=8% Similarity=-0.032 Sum_probs=64.8
Q ss_pred HHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHc-----------------------CCCChHHHHHHHHHHHH
Q psy4772 97 DKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITM-----------------------NPANYTVWQYRREILKA 153 (235)
Q Consensus 97 kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l-----------------------~P~~~~aw~~r~~~l~~ 153 (235)
..+..-|.++..- |.+|.++...|++++|..+|.++..- ....+.-+.+...++++
T Consensus 833 ~l~~~~~~~~~~~-yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~ 911 (1139)
T 4fhn_B 833 QLIGWLNSDPIAV-YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFE 911 (1139)
T ss_dssp HHHHHSCCCHHHH-HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHH
T ss_pred HHhhhccCCcHHH-HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHH
Confidence 3455667776654 78899999999999999999876321 11112334455556666
Q ss_pred hhHhHHHHHHHHHHHHHhCCCChH-----HhHHHHHHHHHcCCchHHHHHHH
Q psy4772 154 LNKDLHQELKYIGEKIKENSKNYQ-----VWRHRQIIVEWMGEPDEELALTA 200 (235)
Q Consensus 154 l~~~~eeal~~~~~al~~~P~n~~-----aw~~r~~~l~~l~~~~~Al~~~~ 200 (235)
-+ .++-++++...||+.-+.+.. .|...=.....+|+|++|...+-
T Consensus 912 ~~-~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 912 ES-AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp TS-CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred cC-CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 55 467777777777775543322 45555555666777777766554
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.51 E-value=2.9 Score=36.33 Aligned_cols=58 Identities=9% Similarity=0.018 Sum_probs=49.8
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
.+.......|++.+++....+++..+|-+-.+|..+-.++...|+ ..+|+..|+++-+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr-~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR-QSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 345667778999999999999999999999999999999999995 7999998887533
No 244
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.59 E-value=0.83 Score=41.70 Aligned_cols=138 Identities=9% Similarity=0.037 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHH-----------HhCCCCCchhhHHHHHHHhcccccHHHHH--------------HHHHHH-HcCCCC
Q psy4772 87 VIQREIDYCRDKI-----------QIAPKNESPWNYLRGAVVNAGEKSERALA--------------LTADAI-TMNPAN 140 (235)
Q Consensus 87 ~~~~Al~~~~kal-----------~l~p~~~~aw~~~~g~il~~~~~~~eAl~--------------~~~~al-~l~P~~ 140 (235)
.+++|.++..+++ .+|+=....| |..+.++...|+..+.+. .+..+. +.|+.-
T Consensus 151 ~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~-fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~ 229 (523)
T 4b4t_S 151 ELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLW-FYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNET 229 (523)
T ss_dssp -----------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH-HHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcch
Confidence 3445665554443 2355556677 445566666666544322 222221 233332
Q ss_pred -hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC-------hHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHH
Q psy4772 141 -YTVWQYRREILKALNKDLHQELKYIGEKIKENSKN-------YQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHA 212 (235)
Q Consensus 141 -~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n-------~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~a 212 (235)
...++-.-..|..-+ .++.|..++.++. +|.+ ..-.++.|.+..-.++|.+|.+++..|+..-|.+..+
T Consensus 230 qa~l~nllLRnYL~~~-~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a 306 (523)
T 4b4t_S 230 KAMLINLILRDFLNNG-EVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS 306 (523)
T ss_dssp HHHHHHHHHHHHHHSS-CSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC
T ss_pred hHHHHHHHHHHHHccC-cHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh
Confidence 334444455555555 5899999999985 6644 2345677899999999999999999999988877654
Q ss_pred hHHHHHH-------HhhcCCccc
Q psy4772 213 WQHRQWV-------INLLDDDDR 228 (235)
Q Consensus 213 w~~r~~~-------l~~l~~~~~ 228 (235)
-.++..+ -.++|..|+
T Consensus 307 ~gfr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 307 LGFLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hhHHHHHHHHHHhHHhhcCCCCC
Confidence 4333222 256788764
No 245
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=82.22 E-value=15 Score=33.86 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=23.0
Q ss_pred CCCCCchhhHHHHHHHhcccccHHHHHHHHHH
Q psy4772 102 APKNESPWNYLRGAVVNAGEKSERALALTADA 133 (235)
Q Consensus 102 ~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~a 133 (235)
..++...| ..+|......++++.|..+|.++
T Consensus 677 ~~~~~~~W-~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 677 DESAEMKW-RALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp TCCCHHHH-HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhCcHhHH-HHHHHHHHHcCCHHHHHHHHHHc
Confidence 34566778 46788888888888888888775
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.91 E-value=38 Score=31.37 Aligned_cols=115 Identities=13% Similarity=0.049 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHhc---ccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHH
Q psy4772 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNA---GEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKY 164 (235)
Q Consensus 88 ~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~---~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~ 164 (235)
.+.|...+.+.-...+-+...+....+.+-.. .+...++...+.++....++....-...++.+ +.+ ++..+..+
T Consensus 230 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r~~-d~~~a~~~ 307 (618)
T 1qsa_A 230 AENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTG-DRRGLNTW 307 (618)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHT-CHHHHHHH
T ss_pred HHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH-HCC-CHHHHHHH
Confidence 34677777666544333333332233333322 23367888888887665544433333334555 457 59999998
Q ss_pred HHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHH
Q psy4772 165 IGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 165 ~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
++++-...+......|=+|.++..+|+.++|...|.++..
T Consensus 308 ~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 308 LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8776553334455566678888999999999999999975
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.40 E-value=14 Score=36.64 Aligned_cols=97 Identities=6% Similarity=-0.122 Sum_probs=72.0
Q ss_pred HHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH--------------------h---CCCChHHhHHHHHHHHHc
Q psy4772 133 AITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK--------------------E---NSKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 133 al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~--------------------~---~P~n~~aw~~r~~~l~~l 189 (235)
.+...|.++..-+-+|.++...| ++++|..+|+++-. . ...-+.-+.|...++.+.
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~~g-e~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~ 912 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLKSK-EAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEE 912 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHT
T ss_pred HhhhccCCcHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHc
Confidence 45667888888899999999999 49999999988631 1 111234567778888999
Q ss_pred CCchHHHHHHHHHHHhCCCChH-----HhHHHHHHHhhcCCccccc
Q psy4772 190 GEPDEELALTAAILAQDAKNYH-----AWQHRQWVINLLDDDDRGV 230 (235)
Q Consensus 190 ~~~~~Al~~~~~ai~ldp~n~~-----aw~~r~~~l~~l~~~~~~~ 230 (235)
+-++-++++.+.||+.-+.+.. .|...-.....+|...+|+
T Consensus 913 ~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 913 SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp SCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred CCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 9999999999999996544332 4666655566777776663
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=76.07 E-value=8.8 Score=29.76 Aligned_cols=75 Identities=7% Similarity=0.019 Sum_probs=52.4
Q ss_pred HHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCChHHhHHHHHHHHHcCCchH
Q psy4772 115 AVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDE 194 (235)
Q Consensus 115 ~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~ 194 (235)
.+-...|+++.|++..+.+ ++...|..+|..-...| +++-|..||.++ +++ ..+.+++...|+.+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~g-n~~lAe~cy~~~-----~D~---~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQG-NASLAEMIYQTQ-----HSF---DKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTT-CHHHHHHHHHHT-----TCH---HHHHHHHHHHTCHHH
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcC-ChHHHHHHHHHh-----CCH---HHHHHHHHHhCCHHH
Confidence 4556678899998887665 67889999999988888 488899998885 333 334455566676655
Q ss_pred HHHHHHHHH
Q psy4772 195 ELALTAAIL 203 (235)
Q Consensus 195 Al~~~~~ai 203 (235)
-...-+.|.
T Consensus 79 L~kla~iA~ 87 (177)
T 3mkq_B 79 LSKMQNIAQ 87 (177)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 249
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=74.18 E-value=13 Score=34.41 Aligned_cols=48 Identities=6% Similarity=-0.005 Sum_probs=38.6
Q ss_pred HHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q psy4772 115 AVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEK 168 (235)
Q Consensus 115 ~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~a 168 (235)
.+....|++++|++.. ...++...|...|....+.+ +++.|..+|.++
T Consensus 660 ~~~l~~~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~-~~~~A~~~y~~~ 707 (814)
T 3mkq_A 660 ELALKVGQLTLARDLL-----TDESAEMKWRALGDASLQRF-NFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcC-CHHHHHHHHHHc
Confidence 4556678888888864 34467899999999999999 599999998875
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=71.61 E-value=43 Score=29.19 Aligned_cols=155 Identities=13% Similarity=-0.008 Sum_probs=90.9
Q ss_pred hcHHHHHHHHHhHHhc---CCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchh-----hHHHHHHHh
Q psy4772 47 NLFSDELSYIEGLISH---DVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPW-----NYLRGAVVN 118 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~---~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw-----~~~~g~il~ 118 (235)
++.++..+++...... -|+.-.+-.-|..+-....--. -.+.-++.|..+++-.-+.-..| +.++|.++.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~ 110 (394)
T 3txn_A 33 GKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDA--GTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYF 110 (394)
T ss_dssp TCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554444333 3444444434444333221111 11234566666665444444444 235788899
Q ss_pred cccccHHHHHHHHHHHHcCCC------ChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC---CCCh----HHhHHHHHH
Q psy4772 119 AGEKSERALALTADAITMNPA------NYTVWQYRREILKALNKDLHQELKYIGEKIKEN---SKNY----QVWRHRQII 185 (235)
Q Consensus 119 ~~~~~~eAl~~~~~al~l~P~------~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~---P~n~----~aw~~r~~~ 185 (235)
..|+|.+|+..+.+++.--.+ -..++.....++..++ ++..+...+.++.+.. +.++ .....-|.+
T Consensus 111 ~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~-n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~ 189 (394)
T 3txn_A 111 DTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALS-NLPKARAALTSARTTANAIYCPPKVQGALDLQSGIL 189 (394)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHH
Confidence 999999999999998873211 1223445566677777 5888888888876643 1222 234445666
Q ss_pred HH-HcCCchHHHHHHHHHHH
Q psy4772 186 VE-WMGEPDEELALTAAILA 204 (235)
Q Consensus 186 l~-~l~~~~~Al~~~~~ai~ 204 (235)
+. ..++|..|...|-.++.
T Consensus 190 ~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 190 HAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHh
Confidence 67 78999999988877764
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.64 E-value=25 Score=30.75 Aligned_cols=100 Identities=11% Similarity=-0.040 Sum_probs=68.8
Q ss_pred CCchhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCC--CChH--
Q psy4772 105 NESPWNYLRGAVVNAGEKSERALALTADAITMNPAN---YTVWQYRREILKALNKDLHQELKYIGEKIKENS--KNYQ-- 177 (235)
Q Consensus 105 ~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~---~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~P--~n~~-- 177 (235)
-..++ ..+|..+...|++++|++++.++....... ...+...-.+....+ ++..+...+.++-..-. .+..
T Consensus 130 ~~~~~-~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~-d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 130 QAQAW-INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYN-DQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CSSCC-HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 33466 579999999999999999999988764333 345555555555566 68999999998865432 2222
Q ss_pred --HhHHHHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 178 --VWRHRQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 178 --aw~~r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
.....|.++...++|.+|-..|-.++...
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 22334555566788999888887776543
No 252
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=70.35 E-value=15 Score=24.66 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=12.7
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILK 152 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~ 152 (235)
|.+|++.+..++...|+...-=..|..+-.
T Consensus 42 Y~~aie~l~~alk~e~d~~~k~~ir~K~~e 71 (83)
T 2w2u_A 42 YKKAIEVLAQLVSLYRDGSTAAIYEQMINE 71 (83)
T ss_dssp HHHHHHHHHHHHHHSTTSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444444444444433333333333
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=67.57 E-value=55 Score=32.58 Aligned_cols=91 Identities=2% Similarity=-0.147 Sum_probs=70.9
Q ss_pred HHHhcccccHHHHHHHHHHHHc----CCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-CCChHHhHHHHHHHHHc
Q psy4772 115 AVVNAGEKSERALALTADAITM----NPANYTVWQYRREILKALNKDLHQELKYIGEKIKEN-SKNYQVWRHRQIIVEWM 189 (235)
Q Consensus 115 ~il~~~~~~~eAl~~~~~al~l----~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~~~-P~n~~aw~~r~~~l~~l 189 (235)
..+.+.|+.++|...+...-++ -.-+...|+.+-..+-+.| .+++|+..+++..+.- .-|..+|+.+...+.+.
T Consensus 135 dglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G-~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~ 213 (1134)
T 3spa_A 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG-AFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213 (1134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC
Confidence 5577789999999999775533 3446678888888888889 4999999999877632 34677888888888888
Q ss_pred CCc-hHHHHHHHHHHHhC
Q psy4772 190 GEP-DEELALTAAILAQD 206 (235)
Q Consensus 190 ~~~-~~Al~~~~~ai~ld 206 (235)
|+. ++|.++++......
T Consensus 214 G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 214 DQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp TCCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcC
Confidence 885 67889999888754
No 254
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=64.24 E-value=19 Score=24.00 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=9.3
Q ss_pred cHHHHHHHHHHHHcCCCChH
Q psy4772 123 SERALALTADAITMNPANYT 142 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~ 142 (235)
|.+|++.+..++...|+...
T Consensus 34 Y~~aie~l~~~lk~e~d~~~ 53 (83)
T 2v6y_A 34 YKKAIEVLSQIIVLYPESVA 53 (83)
T ss_dssp HHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHHHCCCHHH
Confidence 34444444455544544443
No 255
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=62.83 E-value=14 Score=24.77 Aligned_cols=12 Identities=8% Similarity=0.152 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q psy4772 158 LHQELKYIGEKI 169 (235)
Q Consensus 158 ~eeal~~~~~al 169 (235)
+++|+.+|..+|
T Consensus 35 y~eAl~lY~~ai 46 (83)
T 2w2u_A 35 AEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 256
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=61.24 E-value=15 Score=24.47 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=9.8
Q ss_pred HHHhhHhHHHHHHHHHHHHH
Q psy4772 151 LKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 151 l~~l~~~~eeal~~~~~al~ 170 (235)
..+-| .+++|+.+|..+|+
T Consensus 21 ~D~~g-~y~eAl~lY~~aie 39 (83)
T 2v6y_A 21 ADKEG-KVEDAITYYKKAIE 39 (83)
T ss_dssp HHHTT-CHHHHHHHHHHHHH
T ss_pred HHHhc-cHHHHHHHHHHHHH
Confidence 34445 35555555555544
No 257
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=58.56 E-value=60 Score=24.95 Aligned_cols=102 Identities=6% Similarity=-0.079 Sum_probs=58.7
Q ss_pred hhhhhhcHHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHhccc
Q psy4772 42 YSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGE 121 (235)
Q Consensus 42 y~~~~~~~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~~~g~il~~~~ 121 (235)
.+-.+|+++.|.+..+.+ ++..-|..+|..-...|++. =|..+|.++= +.. .+-.++...|
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~-----lAe~cy~~~~-----D~~----~L~~Ly~~tg 74 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNAS-----LAEMIYQTQH-----SFD----KLSFLYLVTG 74 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHH-----HHHHHHHHTT-----CHH----HHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChH-----HHHHHHHHhC-----CHH----HHHHHHHHhC
Confidence 334568889998887655 77889999999999988763 3444444421 111 1212333344
Q ss_pred ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q psy4772 122 KSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEK 168 (235)
Q Consensus 122 ~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~a 168 (235)
.. +-+....+..+..-++..+ ..++..+| +++++++.+.+.
T Consensus 75 ~~-e~L~kla~iA~~~g~~n~a----f~~~l~lG-dv~~~i~lL~~~ 115 (177)
T 3mkq_B 75 DV-NKLSKMQNIAQTREDFGSM----LLNTFYNN-STKERSSIFAEG 115 (177)
T ss_dssp CH-HHHHHHHHHHHHTTCHHHH----HHHHHHHT-CHHHHHHHHHHT
T ss_pred CH-HHHHHHHHHHHHCccHHHH----HHHHHHcC-CHHHHHHHHHHC
Confidence 43 3333444444444444333 33466677 477777776553
No 258
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=57.29 E-value=43 Score=32.64 Aligned_cols=80 Identities=6% Similarity=-0.080 Sum_probs=57.6
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-h--------------------CCC--ChHHhHHHHHHHH
Q psy4772 131 ADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK-E--------------------NSK--NYQVWRHRQIIVE 187 (235)
Q Consensus 131 ~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~-~--------------------~P~--n~~aw~~r~~~l~ 187 (235)
...+..-|.++..=+-+|.++..+|+ +++|..+|++|-. + .++ ...-|.|...++.
T Consensus 830 ~eL~~~~~~t~~~~yv~gr~~L~~ge-~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE 908 (950)
T 4gq2_M 830 MQLIGWLNSDPIAVYLKALIYLKSKE-AVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLF 908 (950)
T ss_dssp HHHGGGCCSSHHHHHHHHHHHHHTTC-HHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHH
Confidence 34556777777777778888888884 7888888776431 1 111 2236677888889
Q ss_pred HcCCchHHHHHHHHHHH-hCCCChH
Q psy4772 188 WMGEPDEELALTAAILA-QDAKNYH 211 (235)
Q Consensus 188 ~l~~~~~Al~~~~~ai~-ldp~n~~ 211 (235)
..+-++-++++.+.||. +.+++..
T Consensus 909 ~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 909 EESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred hcCCHHHHHHHHHHHHhhcccCCcc
Confidence 99999999999999997 5566665
No 259
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=51.62 E-value=53 Score=22.24 Aligned_cols=33 Identities=6% Similarity=0.080 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhh
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALN 155 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~ 155 (235)
|.+|++.|..++...|+...--..+..+-..+.
T Consensus 38 Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~ 70 (93)
T 1wfd_A 38 YQEGIDMLLQVLKGTKESSKRCVLRTKISGYMD 70 (93)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 445555555666666554443333444444343
No 260
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=50.43 E-value=30 Score=23.57 Aligned_cols=19 Identities=32% Similarity=0.277 Sum_probs=11.7
Q ss_pred HHHhhHhHHHHHHHHHHHHH
Q psy4772 151 LKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 151 l~~l~~~~eeal~~~~~al~ 170 (235)
...-+ .+++|+.+|..+|+
T Consensus 25 ~D~~g-~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 25 LDAES-RYQQALVCYQEGID 43 (93)
T ss_dssp HHHTT-CHHHHHHHHHHHHH
T ss_pred HHHhC-CHHHHHHHHHHHHH
Confidence 55555 46777776666554
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=50.15 E-value=61 Score=28.20 Aligned_cols=23 Identities=26% Similarity=0.046 Sum_probs=11.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHHH
Q psy4772 182 RQIIVEWMGEPDEELALTAAILA 204 (235)
Q Consensus 182 r~~~l~~l~~~~~Al~~~~~ai~ 204 (235)
++.++...|+|.+|+..+.+...
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444555555555554444443
No 262
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.68 E-value=1.1e+02 Score=29.76 Aligned_cols=81 Identities=9% Similarity=0.032 Sum_probs=55.8
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHc-C--------------------CC--ChHHHHHHHHHH
Q psy4772 95 CRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITM-N--------------------PA--NYTVWQYRREIL 151 (235)
Q Consensus 95 ~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l-~--------------------P~--~~~aw~~r~~~l 151 (235)
....+..-|.++..- |.+|.++...|++++|..+|++|-.- . +. ...-|.|...++
T Consensus 829 a~eL~~~~~~t~~~~-yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LF 907 (950)
T 4gq2_M 829 CMQLIGWLNSDPIAV-YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKL 907 (950)
T ss_dssp HHHHGGGCCSSHHHH-HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHH
Confidence 345666777776654 77889999999999999988876521 1 11 122455667777
Q ss_pred HHhhHhHHHHHHHHHHHHH-hCCCChH
Q psy4772 152 KALNKDLHQELKYIGEKIK-ENSKNYQ 177 (235)
Q Consensus 152 ~~l~~~~eeal~~~~~al~-~~P~n~~ 177 (235)
+.-+ .++-++.+.+.||. ..+++..
T Consensus 908 E~~~-a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 908 FEES-AYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HHTT-CHHHHHHHHHHHHHTCCSCCHH
T ss_pred HhcC-CHHHHHHHHHHHHhhcccCCcc
Confidence 7777 58899999999997 4445544
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.54 E-value=92 Score=27.05 Aligned_cols=118 Identities=7% Similarity=-0.008 Sum_probs=73.1
Q ss_pred HHHHHHHHHhHHhcCCCchhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCchhhH--HHHHHHhcccccHHH
Q psy4772 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNY--LRGAVVNAGEKSERA 126 (235)
Q Consensus 49 ~~~Al~~~~~aL~~~P~~~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~aw~~--~~g~il~~~~~~~eA 126 (235)
+++.+..+++-...+..-..++..+|..+...|+++ +|+..|.++........+-... ..-.+....+++..+
T Consensus 113 l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~-----~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~ 187 (429)
T 4b4t_R 113 LNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKD-----NAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYV 187 (429)
T ss_dssp HHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCT-----THHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 444444444433344556678999999999999997 6888888888766555543222 222334446888999
Q ss_pred HHHHHHHHHcC--CCChHHHH----HHHHHHHHhhHhHHHHHHHHHHHHHhC
Q psy4772 127 LALTADAITMN--PANYTVWQ----YRREILKALNKDLHQELKYIGEKIKEN 172 (235)
Q Consensus 127 l~~~~~al~l~--P~~~~aw~----~r~~~l~~l~~~~eeal~~~~~al~~~ 172 (235)
.....++-.+- ..+..... +.|.++...+ +|.+|-..|-.++.-.
T Consensus 188 ~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r-~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 188 KEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVR-NFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTS-CHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHhccC
Confidence 99999886653 22322221 2233333344 5888888777766543
No 264
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=43.40 E-value=36 Score=24.26 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=12.1
Q ss_pred HHHhhHhHHHHHHHHHHHHH
Q psy4772 151 LKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 151 l~~l~~~~eeal~~~~~al~ 170 (235)
...-+ .+++|+.+|..+++
T Consensus 28 ~D~ag-~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 28 EDKAG-NYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHT-CHHHHHHHHHHHHH
T ss_pred HHHcc-CHHHHHHHHHHHHH
Confidence 44455 47777777776665
No 265
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=43.29 E-value=54 Score=21.60 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q psy4772 89 QREIDYCRDKI 99 (235)
Q Consensus 89 ~~Al~~~~kal 99 (235)
++|+....+|+
T Consensus 11 ~~A~~l~~~Av 21 (85)
T 2v6x_A 11 TKGIELVQKAI 21 (85)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555544444
No 266
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.11 E-value=47 Score=30.17 Aligned_cols=77 Identities=9% Similarity=0.031 Sum_probs=49.5
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc------hhhHHHHHHHhcccccHHHHHHHHHHHHcCCCC
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES------PWNYLRGAVVNAGEKSERALALTADAITMNPAN 140 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~------aw~~~~g~il~~~~~~~eAl~~~~~al~l~P~~ 140 (235)
+..|+..-+.+...+.|+ .|..+.+|+. .|.+.. -+.|..|.+....++|.+|.+++..|++..|.+
T Consensus 231 a~l~nllLRnYL~~~~y~-----qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVD-----SASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCST-----THHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHH-----HHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 344444445555556665 4677777764 554421 122346888888899999999999999998877
Q ss_pred hHHHHHHHHH
Q psy4772 141 YTVWQYRREI 150 (235)
Q Consensus 141 ~~aw~~r~~~ 150 (235)
..+-..+..+
T Consensus 304 ~~a~gfr~~a 313 (523)
T 4b4t_S 304 SKSLGFLQQS 313 (523)
T ss_dssp SSCSHHHHHH
T ss_pred hhhhhHHHHH
Confidence 6554444333
No 267
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=43.11 E-value=19 Score=24.82 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=15.2
Q ss_pred HHHHHHhcccccHHHHHHHHHHH
Q psy4772 112 LRGAVVNAGEKSERALALTADAI 134 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al 134 (235)
+++..+...|+|++|++|..++.
T Consensus 20 RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHH
Confidence 45566666677777777666655
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=42.54 E-value=46 Score=21.71 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=28.4
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
.+|..+...|.+++++.++-+||...|.-.....
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~ 55 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQ 55 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5788888888899999999999999988766544
No 269
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=42.22 E-value=45 Score=26.05 Aligned_cols=36 Identities=6% Similarity=-0.070 Sum_probs=26.8
Q ss_pred hhHhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCCCc
Q psy4772 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES 107 (235)
Q Consensus 67 ~~a~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~l~p~~~~ 107 (235)
..-.|.+|.+.+..++|. +|.+.+..|+..-|....
T Consensus 14 v~Y~YYlGr~~~~~~~y~-----~A~~~L~~A~~~~~~~~~ 49 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFK-----QAEEYLSFAFEHCHRSSQ 49 (203)
T ss_dssp HHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHhCHH-----HHHHHHHHHHHHCCHhHH
Confidence 345678888888877764 688888888888776643
No 270
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=41.32 E-value=2.2e+02 Score=26.27 Aligned_cols=116 Identities=8% Similarity=-0.019 Sum_probs=72.1
Q ss_pred hcHHHHHHHHHhHHhcCC-CchhHhhhHHHHHhhc-CCC-CHHHHHHHHHHHHHHHHhCCCCCc-hhhHHHHHHHhcccc
Q psy4772 47 NLFSDELSYIEGLISHDV-RNNSAWTQRYFVINHT-TQF-TPEVIQREIDYCRDKIQIAPKNES-PWNYLRGAVVNAGEK 122 (235)
Q Consensus 47 ~~~~~Al~~~~~aL~~~P-~~~~a~~~~g~~l~~~-~~~-~e~~~~~Al~~~~kal~l~p~~~~-aw~~~~g~il~~~~~ 122 (235)
.+.+.|...+...-+..+ +....+..++.+.... ... . .++...+.+.....++... -| ..+..+. .|+
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~--~~r~Alr-~~d 300 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVT----DEQAKWRDDAIMRSQSTSLIER--RVRMALG-TGD 300 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCC----HHHHHHHHHHHHTCCCHHHHHH--HHHHHHH-HTC
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCC----hHHHHHHHhccccCCChHHHHH--HHHHHHH-CCC
Confidence 456778877776654322 2233333444333222 211 2 2466666666544333222 34 3446654 599
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy4772 123 SERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK 170 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~~~eeal~~~~~al~ 170 (235)
++.|...+.++-.-.+....+.+.+|.++..+|+ -++|...|.++.+
T Consensus 301 ~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~-~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR-EAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccccccccHhHHHHHHHHHHHcCC-HHHHHHHHHHHhc
Confidence 9999999987666444567778889999999994 7899999998875
No 271
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=38.02 E-value=1.8e+02 Score=28.96 Aligned_cols=95 Identities=5% Similarity=-0.128 Sum_probs=56.3
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH-----hCCCCCchhhHHHHHHHhcccccHHHHHHHHHHHHcC-CCChHH
Q psy4772 70 WTQRYFVINHTTQFTPEVIQREIDYCRDKIQ-----IAPKNESPWNYLRGAVVNAGEKSERALALTADAITMN-PANYTV 143 (235)
Q Consensus 70 ~~~~g~~l~~~~~~~e~~~~~Al~~~~kal~-----l~p~~~~aw~~~~g~il~~~~~~~eAl~~~~~al~l~-P~~~~a 143 (235)
+..+-..+.+.|+. ++|...|...-+ ..|+ ...|| .+-..+.+.|+.++|++.|++..+.- .-+...
T Consensus 130 ynaLIdglcK~G~l-----eeA~~Lf~eM~~m~~kG~~Pd-vvTYN-tLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 130 LLAFFKCCLLTDQL-----PLAHHLLVVHHGQRQKRKLLT-LDMYN-AVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp HHHHHHHHHHHTCH-----HHHHHHHHHHHHSHHHHTTCC-HHHHH-HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHhCCCH-----HHHHHHHHHHHHHhhcCCCCC-HhHHH-HHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 44444455556654 467777755432 2333 33454 23356677788888888888887642 224455
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHh
Q psy4772 144 WQYRREILKALNKDLHQELKYIGEKIKE 171 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~al~~ 171 (235)
|+..-.++.+.|+..++|..++++....
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 5665556666664346777777776654
No 272
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=37.84 E-value=48 Score=22.80 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=10.4
Q ss_pred HHHHHHHhhHhHHHHHHHHHHH
Q psy4772 147 RREILKALNKDLHQELKYIGEK 168 (235)
Q Consensus 147 r~~~l~~l~~~~eeal~~~~~a 168 (235)
|+..+.+-|+ |++|++|.+++
T Consensus 21 rAe~ll~~gk-ydeAIech~kA 41 (97)
T 2crb_A 21 RADRLLAAGK-YEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHhcCC-HHHHHHHHHHH
Confidence 4444444452 55555555553
No 273
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=34.84 E-value=1.2e+02 Score=21.45 Aligned_cols=20 Identities=5% Similarity=0.056 Sum_probs=10.3
Q ss_pred cHHHHHHHHHHHHcCCCChH
Q psy4772 123 SERALALTADAITMNPANYT 142 (235)
Q Consensus 123 ~~eAl~~~~~al~l~P~~~~ 142 (235)
|.+|++.|..++...|.+..
T Consensus 41 Y~~Aie~l~~alk~e~~~~~ 60 (117)
T 2cpt_A 41 YQHAVQYFLHVVKYEAQGDK 60 (117)
T ss_dssp HHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHHHhccCCHH
Confidence 44555555555555544443
No 274
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=34.79 E-value=53 Score=30.58 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=35.5
Q ss_pred HHHhcccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhH
Q psy4772 115 AVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK 156 (235)
Q Consensus 115 ~il~~~~~~~eAl~~~~~al~l~P~~~~aw~~r~~~l~~l~~ 156 (235)
......|+|+.|.+..+.++..+|++..|-.-++.+|.+||.
T Consensus 457 ~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 457 RASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 334456889999999999999999999999999999999983
No 275
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=34.01 E-value=39 Score=21.03 Aligned_cols=34 Identities=15% Similarity=0.002 Sum_probs=14.9
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHhcccccHHHH
Q psy4772 94 YCRDKIQIAPKNESPWNYLRGAVVNAGEKSERAL 127 (235)
Q Consensus 94 ~~~kal~l~p~~~~aw~~~~g~il~~~~~~~eAl 127 (235)
..-.-|...+...++-...+...+.++|+|++||
T Consensus 27 tIA~~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 27 SIADWLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 3444555555555544444556667777787776
No 276
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=27.96 E-value=1.9e+02 Score=21.69 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=34.7
Q ss_pred HHHHHHHhCCCChHHhHHHHHHHHHcCCchHHHHHHHHHHHhCCC
Q psy4772 164 YIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208 (235)
Q Consensus 164 ~~~~al~~~P~n~~aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~ 208 (235)
.+..++.-+|-++.....++.+|.++|+..+|-+...+|.+.--+
T Consensus 113 i~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 113 IGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 344445667778999999999999999999999999998875543
No 277
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=26.71 E-value=83 Score=29.21 Aligned_cols=50 Identities=10% Similarity=-0.027 Sum_probs=37.8
Q ss_pred HhHHHHHHHHHcCCchHHHHHHHHHHHhCCCChHHhHHHHHHHhhcCCcc
Q psy4772 178 VWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDD 227 (235)
Q Consensus 178 aw~~r~~~l~~l~~~~~Al~~~~~ai~ldp~n~~aw~~r~~~l~~l~~~~ 227 (235)
+-..++......|+|.-|.+.++.++..+|+|..|-.-++.++..||.+.
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 44556666667788888888888888888888888877777777776653
No 278
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=23.53 E-value=1.2e+02 Score=23.44 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCC
Q psy4772 144 WQYRREILKALNKDLHQELKYIGEKIKENSKN 175 (235)
Q Consensus 144 w~~r~~~l~~l~~~~eeal~~~~~al~~~P~n 175 (235)
.++.|.++..-+ +|.+|..++..|++.-|..
T Consensus 17 ~YYlGr~~~~~~-~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 17 KYYVGRKAMFDS-DFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHh-CHHHHHHHHHHHHHHCCHh
Confidence 456676666555 4777777777777777655
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.65 E-value=2.5e+02 Score=20.82 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=12.2
Q ss_pred HHHHcCCchHHHHHHHHHHHhC
Q psy4772 185 IVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 185 ~l~~l~~~~~Al~~~~~ai~ld 206 (235)
.+...|++.+|-+.|+..|...
T Consensus 110 ~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 110 HLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHcC
Confidence 3455555666666666555543
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.80 E-value=2.7e+02 Score=20.89 Aligned_cols=48 Identities=8% Similarity=-0.184 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCCChHHhHH--HHHHHHHcCCchHHHHHHHHHHHhC
Q psy4772 159 HQELKYIGEKIKENSKNYQVWRH--RQIIVEWMGEPDEELALTAAILAQD 206 (235)
Q Consensus 159 eeal~~~~~al~~~P~n~~aw~~--r~~~l~~l~~~~~Al~~~~~ai~ld 206 (235)
.+....|.-+....-..-.|.++ -+..+...|++.+|-+.|+..|...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 33444455444433333333333 3334455666666666666666654
No 281
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=20.41 E-value=1.9e+02 Score=19.05 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=7.0
Q ss_pred ccccHHHHHHHHHHH
Q psy4772 120 GEKSERALALTADAI 134 (235)
Q Consensus 120 ~~~~~eAl~~~~~al 134 (235)
.|++++|+.+|..++
T Consensus 29 ~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 29 ESRYPQALVCYQEGI 43 (86)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 344444544444444
No 282
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=20.25 E-value=76 Score=21.80 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=26.3
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHcCCCChHHHH
Q psy4772 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145 (235)
Q Consensus 112 ~~g~il~~~~~~~eAl~~~~~al~l~P~~~~aw~ 145 (235)
.+|..+...|.++.++.+|-+||...|.-.....
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~ 58 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQ 58 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4678887888899999988888888877655433
Done!