RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4772
(235 letters)
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 143 bits (361), Expect = 6e-40
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 115 AVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKYI 165
AGE E L LT+ + NP T+W RRE+L+ L + + EL ++
Sbjct: 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFL 96
Query: 166 GEKIKENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQWVINLL 223
++ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++V
Sbjct: 97 ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA 156
Query: 224 DDDDRGVLEY 233
L +
Sbjct: 157 AVAPAEELAF 166
Score = 88.7 bits (219), Expect = 2e-20
Identities = 36/216 (16%), Positives = 79/216 (36%), Gaps = 21/216 (9%)
Query: 39 AIAYSQKCNLFSDE-LSYIEGLISHDVRNNSAWTQRYFVINH-----TTQFTPEVIQREI 92
A+ ++ + L ++ + + W R V+ H + + + +++ E+
Sbjct: 34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAEL 93
Query: 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKS-ERALALTADAITMNPANYTVWQYRREIL 151
+ +++ PK+ W++ + E + R L L A + + N+ W YRR +
Sbjct: 94 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA 153
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEP--------------DEELA 197
+EL + I N NY W +R ++ + +EL
Sbjct: 154 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE 213
Query: 198 LTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233
L D + AW + +W++ + D +
Sbjct: 214 LVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVH 249
Score = 82.5 bits (203), Expect = 2e-18
Identities = 18/180 (10%), Positives = 54/180 (30%), Gaps = 9/180 (5%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINH---------TTQFTPEVIQREIDYCRDK 98
++EL++ + LI+ + N S+W R ++ + V+ +E++ ++
Sbjct: 159 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 218
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
P ++S W Y R + A + ++ + L +
Sbjct: 219 FFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMV 278
Query: 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218
+ + + + + + + + D++ +
Sbjct: 279 DEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRP 338
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 123 bits (309), Expect = 2e-33
Identities = 69/235 (29%), Positives = 110/235 (46%), Gaps = 27/235 (11%)
Query: 1 MTDSSSDEDNEIWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLI 60
M D D+ +V Y++R EW D+ P+PQ+DGP PVV I YS K + +
Sbjct: 51 MDDGFVSLDSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDK---------FRD--- 98
Query: 61 SHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAG 120
+ V+ E +R RD I++ N + W++ R + +
Sbjct: 99 --------VYDYFRAVLQRD-----ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ 145
Query: 121 EKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWR 180
+ + I P NY VW +RR +++ L D QEL++I + + +++KNY W+
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR-DPSQELEFIADILNQDAKNYHAWQ 204
Query: 181 HRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVI-NLLDDDDRGVLEYE 234
HRQ +++ D EL +L +D +N W R +VI N +DR VLE E
Sbjct: 205 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 259
Score = 74.3 bits (182), Expect = 1e-15
Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPE-VIQREIDYCRDKIQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QRYFVI++TT + V++RE+ Y + I++
Sbjct: 211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270
Query: 103 PKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQEL 162
P NES WNYL+G + + G + L + + P++ + + ++ L +
Sbjct: 271 PHNESAWNYLKGILQDRG--LSKYPNLLNQLLDLQPSHSSPY-LIAFLVDIYEDMLENQC 327
Query: 163 KYIGEKIKE 171
+ + +
Sbjct: 328 DNKEDILNK 336
Score = 63.9 bits (155), Expect = 4e-12
Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 10/166 (6%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAP 103
+ S EL +I +++ D +N AW R +VI ++ E+ Y ++
Sbjct: 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-----KLWDNELQYVDQLLKEDV 231
Query: 104 KNESPWNYLRGAVVNAGEKS-----ERALALTADAITMNPANYTVWQYRREILKALNKDL 158
+N S WN + N + ER + T + I + P N + W Y + IL+
Sbjct: 232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK 291
Query: 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILA 204
+ L ++ + + + I E M E + A
Sbjct: 292 YPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 337
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein
prenylation, metal-binding, prenyltransferase, zinc,
phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A*
3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A*
3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A*
Length = 331
Score = 121 bits (304), Expect = 3e-33
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 115 AVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKYI 165
AGE E L LT+ + NP T+W RRE+L+ L + + EL ++
Sbjct: 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFL 97
Query: 166 GEKIKENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQWVINLL 223
++ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++V
Sbjct: 98 ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA 157
Query: 224 DDDDRGVLEY 233
L +
Sbjct: 158 AVAPAEELAF 167
Score = 79.5 bits (195), Expect = 1e-17
Identities = 37/218 (16%), Positives = 79/218 (36%), Gaps = 21/218 (9%)
Query: 39 AIAYSQKCNLFSDE-LSYIEGLISHDVRNNSAWTQRYFVINH-----TTQFTPEVIQREI 92
A+ ++ + L ++ + + W R V+ H + + + +++ E+
Sbjct: 35 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAEL 94
Query: 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKS-ERALALTADAITMNPANYTVWQYRREIL 151
+ +++ PK+ W++ + E + R L L A + + N+ W YRR +
Sbjct: 95 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA 154
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEP--------------DEELA 197
+EL + I N NY W +R ++ + +EL
Sbjct: 155 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE 214
Query: 198 LTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEYET 235
L D + AW + +W++ +E T
Sbjct: 215 LVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKST 252
Score = 72.9 bits (178), Expect = 2e-15
Identities = 19/138 (13%), Positives = 51/138 (36%), Gaps = 9/138 (6%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINH---------TTQFTPEVIQREIDYCRDK 98
++EL++ + LI+ + N S+W R ++ + V+ +E++ ++
Sbjct: 160 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 219
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
P ++S W Y R + + E ++ + + + + + E L +
Sbjct: 220 FFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 279
Query: 159 HQELKYIGEKIKENSKNY 176
++ + Y
Sbjct: 280 LLMRALDPLLYEKETLQY 297
Score = 67.1 bits (163), Expect = 2e-13
Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 16/171 (9%)
Query: 48 LFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNES 107
L EL ++E + + ++ W R +++ ++ RE++ C ++ +N
Sbjct: 89 LVKAELGFLESCLRVNPKSYGTWHHRCWLL---SRLPEPNWARELELCARFLEADERNFH 145
Query: 108 PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------- 157
W+Y R A LA T IT N +NY+ W YR +L L+
Sbjct: 146 CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 205
Query: 158 ---LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205
L +EL+ + + + W + + ++ E + +L
Sbjct: 206 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQS 256
Score = 36.7 bits (84), Expect = 0.004
Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 8/123 (6%)
Query: 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTT------QFTPEVIQREIDYCRDKIQ 100
N+ EL ++ D + SAW +++ + V+Q E++ C++ +
Sbjct: 207 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266
Query: 101 IAPKNESPWNYL--RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
+ P+N+ + ++ + L + ++P R N L
Sbjct: 267 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL 326
Query: 159 HQE 161
E
Sbjct: 327 KME 329
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase,
transferase-transferase inhibitor; HET: SUC 3CX FPP 778;
2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A*
3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Length = 349
Score = 118 bits (297), Expect = 4e-32
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 3/129 (2%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
I + + + +Y R A+ EKSERAL LT + MNPA+YTVWQYR +L +LNK
Sbjct: 46 PIMYSEEYKDAMDYFR-AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKS 104
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE--PDEELALTAAILAQDAKNYHAWQH 215
L EL+ + E +N K+YQVW HR ++++ + P E+ L D KNYH W +
Sbjct: 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAY 164
Query: 216 RQWVINLLD 224
W+ +
Sbjct: 165 LHWLYSHFS 173
Score = 69.9 bits (170), Expect = 3e-14
Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 2/144 (1%)
Query: 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHT--TQFTPEVIQREIDYCRDKIQIAPK 104
+ EL + ++ D RNNSAW R+++ + + +Q E+ Y I + P
Sbjct: 181 AQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH 240
Query: 105 NESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKY 164
N S WNYLRG + + L +
Sbjct: 241 NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300
Query: 165 IGEKIKENSKNYQVWRHRQIIVEW 188
+ ++ + ++ +
Sbjct: 301 VPLALEYLADSFIEQNRVDDAAKV 324
Score = 31.7 bits (71), Expect = 0.19
Identities = 13/59 (22%), Positives = 19/59 (32%)
Query: 42 YSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQ 100
DEL YI I N SAW + H + ++ + Y K+
Sbjct: 217 AETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLN 275
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha; geranylgeranyltrasferase, ggtase,
ggtase-I, PGGT, prenyltransferase, farnesyltransferase;
HET: B3P GRG; 1.80A {Candida albicans}
Length = 306
Score = 112 bits (281), Expect = 5e-30
Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 10/145 (6%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKAL-NK 156
+I + L A++ A E SERAL +T I ++YT+W YR ILK L N+
Sbjct: 25 QILYDEDYKQIMGLLL-ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNR 83
Query: 157 DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGE-------PDEELALTAAILAQDAKN 209
+L+ EL + E +N KNYQ+W +RQ+I+ + E P E + A+L+ D KN
Sbjct: 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN 143
Query: 210 YHAWQHRQWVINLLD-DDDRGVLEY 233
+H W +R+W+++ D +D L +
Sbjct: 144 HHVWSYRKWLVDTFDLHNDAKELSF 168
Score = 108 bits (271), Expect = 1e-28
Identities = 37/229 (16%), Positives = 85/229 (37%), Gaps = 35/229 (15%)
Query: 16 YKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYF 75
++ ++ D+ P+ + + I Y + + + + L+ +
Sbjct: 2 TDSKYDYSDITPVDINTEEPQICQILYDED---YKQIMGLLLALMKAE------------ 46
Query: 76 VINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS-ERALALTADAI 134
E +R + I + + W Y + N ++ L +
Sbjct: 47 ----------EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIA 96
Query: 135 TMNPANYTVWQYRREILKALNK------DLHQELKYIGEKIKENSKNYQVWRHRQIIVEW 188
N NY +W YR+ I+ + + D ++E + + + KN+ VW +R+ +V+
Sbjct: 97 LDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDT 156
Query: 189 MGEPDE--ELALTAAILAQDAKNYHAWQHRQWVI-NLLDDDDRGVLEYE 234
++ EL+ ++ D KN AW HR +++ + ++ E
Sbjct: 157 FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205
Score = 72.8 bits (178), Expect = 2e-15
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 8/140 (5%)
Query: 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQF-TPEVIQREIDYCRDKIQIAPKNES 107
+ ELS+++ +I D++NNSAW+ R+F++ T I E++Y +DKI P+N S
Sbjct: 162 DAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS 221
Query: 108 PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQE-----L 162
WNYL G + + + + T + K +
Sbjct: 222 TWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281
Query: 163 KYIGEKIKENSKNYQVWRHR 182
+ K N+ W ++
Sbjct: 282 DLLKSKYNPIRSNF--WDYQ 299
Score = 65.9 bits (160), Expect = 6e-13
Identities = 27/179 (15%), Positives = 65/179 (36%), Gaps = 16/179 (8%)
Query: 49 FSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESP 108
E +E ++S D +N+ W+ R ++++ F +E+ + I KN S
Sbjct: 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDT---FDLHNDAKELSFVDKVIDTDLKNNSA 182
Query: 109 WNYLRGAVVNAGEKS-----ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELK 163
W++ + + + + L D I P N + W Y I + ++ + Q +
Sbjct: 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEE 242
Query: 164 YIGEKIKENSKNYQVWRHRQIIVE-WMGEPDEELALTA-AILAQDA----KNYHAWQHR 216
+ + + + + + + + + T +L N+ W ++
Sbjct: 243 FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNF--WDYQ 299
Score = 35.0 bits (80), Expect = 0.012
Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 1/108 (0%)
Query: 47 NLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNE 106
N +EL+Y++ I +N S W + + ++ + D + +
Sbjct: 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQL-EEFSLQFVDLEKDQVTSS 258
Query: 107 SPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKAL 154
L + +E NP W Y+ L ++
Sbjct: 259 FALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKLTSV 306
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 44.6 bits (105), Expect = 1e-05
Identities = 16/134 (11%), Positives = 29/134 (21%), Gaps = 2/134 (1%)
Query: 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148
QR + + P G A E +R L + A + P
Sbjct: 277 QRLLPVLCQAHGLTPDQVVAI-ASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHD 335
Query: 149 EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208
+AL + + L + + + + L +
Sbjct: 336 GGKQALET-VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 394
Query: 209 NYHAWQHRQWVINL 222
A L
Sbjct: 395 QVVAIASNGGKQAL 408
Score = 44.3 bits (104), Expect = 2e-05
Identities = 17/147 (11%), Positives = 33/147 (22%), Gaps = 2/147 (1%)
Query: 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYR 147
+QR + + P A E +R L + + PA
Sbjct: 411 VQRLLPVLCQAHGLTPDQVVAIAS-HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASH 469
Query: 148 REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207
+AL + + Q L + + + + L +
Sbjct: 470 DGGKQAL-ETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528
Query: 208 KNYHAWQHRQWVINLLDDDDRGVLEYE 234
A L+ R +
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLC 555
Score = 43.1 bits (101), Expect = 4e-05
Identities = 15/136 (11%), Positives = 31/136 (22%), Gaps = 2/136 (1%)
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
+ + P A E +R L + A + PA +AL + +
Sbjct: 185 LNLTPAQVVAI-ASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQAL-ETM 242
Query: 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218
+ L + + + + L + A
Sbjct: 243 QRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGG 302
Query: 219 VINLLDDDDRGVLEYE 234
L+ R +
Sbjct: 303 GKQALETVQRLLPVLC 318
Score = 41.6 bits (97), Expect = 2e-04
Identities = 17/146 (11%), Positives = 33/146 (22%), Gaps = 2/146 (1%)
Query: 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148
QR + + P G A E +R L + A + P
Sbjct: 514 QRLLPVLCQAHGLTPDQVVAIAS-NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 572
Query: 149 EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208
+AL + + + L + + + + L +
Sbjct: 573 GGKQAL-ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631
Query: 209 NYHAWQHRQWVINLLDDDDRGVLEYE 234
A L+ R +
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPVLC 657
Score = 39.2 bits (91), Expect = 7e-04
Identities = 16/146 (10%), Positives = 33/146 (22%), Gaps = 2/146 (1%)
Query: 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148
QR + + P A E +R L + A + P
Sbjct: 616 QRLLPVLCQAHGLTPAQVVAI-ASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 674
Query: 149 EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208
+AL + + + L + + + + + L +
Sbjct: 675 GGKQAL-ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPD 733
Query: 209 NYHAWQHRQWVINLLDDDDRGVLEYE 234
A L+ R +
Sbjct: 734 QVVAIASNGGGKQALETVQRLLPVLC 759
Score = 38.5 bits (89), Expect = 0.002
Identities = 15/146 (10%), Positives = 26/146 (17%), Gaps = 3/146 (2%)
Query: 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148
QR + + P A E +R L + A + P
Sbjct: 311 QRLLPVLCQAHGLTPDQVVAI-ASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 369
Query: 149 EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208
+AL + + L +
Sbjct: 370 GGKQALETVQRLLPVL-CQAHGLTPDQVVAIASNGGKQA-LETVQRLLPVLCQAHGLTPD 427
Query: 209 NYHAWQHRQWVINLLDDDDRGVLEYE 234
A L+ R +
Sbjct: 428 QVVAIASHDGGKQALETVQRLLPVLC 453
Score = 35.0 bits (80), Expect = 0.019
Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 2/136 (1%)
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
+Q+ RG V ALT + + PA +AL + +
Sbjct: 151 LQLDTGQLVKI-AKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQAL-ETV 208
Query: 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218
+ L + + + + L + A
Sbjct: 209 QRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIG 268
Query: 219 VINLLDDDDRGVLEYE 234
L+ R +
Sbjct: 269 GKQALETVQRLLPVLC 284
Score = 30.8 bits (69), Expect = 0.50
Identities = 15/148 (10%), Positives = 28/148 (18%), Gaps = 2/148 (1%)
Query: 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQ 145
E +QR + + P A E +R L + + A
Sbjct: 749 ETVQRLLPVLCQAHGLTPAQVVAI-ASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIA 807
Query: 146 YRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205
+AL + + + L +
Sbjct: 808 SNIGGKQALETVQRLLPVL-CQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGL 866
Query: 206 DAKNYHAWQHRQWVINLLDDDDRGVLEY 233
A L+ R +
Sbjct: 867 TPDQVVAIASNIGGKQALETVQRLLPVL 894
Score = 30.0 bits (67), Expect = 0.69
Identities = 11/112 (9%), Positives = 23/112 (20%), Gaps = 1/112 (0%)
Query: 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK 170
A E +R L + A + +AL + + + L + +
Sbjct: 807 ASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQAL-ETVQRLLPVLCQDHG 865
Query: 171 ENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINL 222
+ + L + A L
Sbjct: 866 LTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQAL 917
Score = 29.6 bits (66), Expect = 1.1
Identities = 18/146 (12%), Positives = 34/146 (23%), Gaps = 2/146 (1%)
Query: 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148
QR + + P G A E +R L + A + PA
Sbjct: 718 QRLLPVLCQAHGLTPDQVVAI-ASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNI 776
Query: 149 EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208
+AL + + + L + + + + L +
Sbjct: 777 GGKQAL-ETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQD 835
Query: 209 NYHAWQHRQWVINLLDDDDRGVLEYE 234
A L+ R +
Sbjct: 836 QVVAIASNIGGKQALETVQRLLPVLC 861
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 43.2 bits (102), Expect = 3e-05
Identities = 15/142 (10%), Positives = 34/142 (23%), Gaps = 3/142 (2%)
Query: 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILK 152
C+ + P+ A E +R L + A + P +
Sbjct: 264 VLCQA-HGLTPQQVVAIAS-NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 321
Query: 153 ALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHA 212
AL + + + L + + + + + L + + A
Sbjct: 322 AL-ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 380
Query: 213 WQHRQWVINLLDDDDRGVLEYE 234
L+ R +
Sbjct: 381 IASNGGGKQALETVQRLLPVLC 402
Score = 40.1 bits (94), Expect = 4e-04
Identities = 12/118 (10%), Positives = 29/118 (24%), Gaps = 2/118 (1%)
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
+ + P+ A E +R L + A + P +AL + +
Sbjct: 65 LNLTPEQVVAIAS-HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQAL-ETV 122
Query: 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216
+ L + + + + + L + + A
Sbjct: 123 QRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASN 180
Score = 38.2 bits (89), Expect = 0.002
Identities = 16/142 (11%), Positives = 35/142 (24%), Gaps = 3/142 (2%)
Query: 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILK 152
C+ + P+ G A E +R L + A + P +
Sbjct: 230 VLCQA-HGLTPQQVVAIAS-NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQ 287
Query: 153 ALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHA 212
AL + + + L + + + + + L + + A
Sbjct: 288 AL-ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346
Query: 213 WQHRQWVINLLDDDDRGVLEYE 234
L+ R +
Sbjct: 347 IASHDGGKQALETVQRLLPVLC 368
Score = 37.4 bits (87), Expect = 0.002
Identities = 13/128 (10%), Positives = 30/128 (23%), Gaps = 2/128 (1%)
Query: 89 QREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148
QR + + P+ A E + L + A + P
Sbjct: 123 QRLLPVLCQAHGLTPEQVVAIAS-HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNG 181
Query: 149 EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208
+AL + + + L + + + + + L + +
Sbjct: 182 GGKQAL-ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240
Query: 209 NYHAWQHR 216
A
Sbjct: 241 QVVAIASN 248
Score = 35.1 bits (81), Expect = 0.016
Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 4/111 (3%)
Query: 93 DYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILK 152
C+ + P+ G A E +R L + A + P +
Sbjct: 366 VLCQA-HGLTPEQVVAIAS-NGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQ 423
Query: 153 ALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELA-LTAAI 202
AL + + + L + + + + +L+ A+
Sbjct: 424 AL-ETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPAL 473
Score = 34.7 bits (80), Expect = 0.018
Identities = 15/143 (10%), Positives = 34/143 (23%), Gaps = 2/143 (1%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
+ + P+ G A E +R L + A + P
Sbjct: 194 LPVLCQAHGLTPQQVVAI-ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 252
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211
+AL + + + L + + + + + L + +
Sbjct: 253 QAL-ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVV 311
Query: 212 AWQHRQWVINLLDDDDRGVLEYE 234
A L+ R +
Sbjct: 312 AIASNGGGKQALETVQRLLPVLC 334
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 2e-04
Identities = 28/156 (17%), Positives = 47/156 (30%), Gaps = 52/156 (33%)
Query: 105 NESP-----WNYLRGAVVNAGEKSERALALT-ADAITMNPANYTVW------QYRREILK 152
S WN A + + D + NP N T+ + RE
Sbjct: 1637 KTSKAAQDVWN-------RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 153 AL----NKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTA----AILA 204
A+ D + + I ++I E+S +Y +R L+ T A+
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSY-TFRS----------EKGLLSATQFTQPALT- 1737
Query: 205 QDAKNYHAWQH-RQWVINLLDDDDR------GVLEY 233
A++ + L+ D G EY
Sbjct: 1738 --LMEKAAFEDLKSK--GLIPADATFAGHSLG--EY 1767
Score = 39.6 bits (92), Expect = 6e-04
Identities = 43/244 (17%), Positives = 82/244 (33%), Gaps = 80/244 (32%)
Query: 19 REEWKDLRPIP-----QDDGPTPVVAIAYSQKCNLFSDEL--SYIEGLISHDVRNNSAWT 71
+E++ + P P DD PT EL ++ G +S V +
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPA-------------ELVGKFL-GYVSSLVEPSKVGQ 79
Query: 72 QRYFVINHTTQFTPEVIQREIDYCRDK-I-----QIAPKNESPW--------NYLRGAVV 117
+ T+F E Y I ++ +N++ NY+ A +
Sbjct: 80 FDQVLNLCLTEF-------ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT-ARI 131
Query: 118 NAGEKSER----AL---ALTADAITM-------NPANY-----TVWQ-YRREILKALNKD 157
A ++ AL +A + N +Y ++Q Y ++ L K
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH-VLVGDLIKF 190
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQI-IVEWMGE----PDEELALTAAI------LAQD 206
+ L + + K + + + I+EW+ PD++ L+ I + Q
Sbjct: 191 SAETLSELIRTTLDAEKVFT----QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 207 AKNY 210
A +Y
Sbjct: 247 A-HY 249
Score = 35.4 bits (81), Expect = 0.015
Identities = 41/247 (16%), Positives = 70/247 (28%), Gaps = 103/247 (41%)
Query: 16 YKN----REEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNN---- 67
YK ++ W A + + FS I V NN
Sbjct: 1636 YKTSKAAQDVWNR--------------ADNHFKDTYGFS---------ILDIVINNPVNL 1672
Query: 68 ---------SAWTQRY----FVINHTTQFTPEVIQREIDYCRDKIQI-APKNE------- 106
+ Y F + E I +EI+ + K
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 107 ---------SPWNYLR--GAVVN----AG----EKSERALALTADAITMNPANYTVWQYR 147
+ + L+ G + AG E + ALA AD +++ V YR
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA--ALASLADVMSIESLVEVV-FYR 1789
Query: 148 REILK----------------ALN-----KDLHQE-LKYIGEKIKENSK------NYQVW 179
++ A+N QE L+Y+ E++ + + NY V
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV- 1848
Query: 180 RHRQIIV 186
++Q +
Sbjct: 1849 ENQQYVA 1855
Score = 32.7 bits (74), Expect = 0.12
Identities = 28/175 (16%), Positives = 52/175 (29%), Gaps = 51/175 (29%)
Query: 68 SAWTQRYFVINHTT--------------------QFTPEVIQREIDYCRDKIQIAPKNES 107
A++ R ++H + QF + + + D P E
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA-EL 60
Query: 108 PWNYLR--GAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLH------ 159
+L ++V + + L + ++ L+ D+H
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNL----------CLTEFENCYLE--GNDIHALAAKL 108
Query: 160 -QELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEEL---ALTAAILAQDAKNY 210
QE K KE KNY R + P ++ AL A+ +A+
Sbjct: 109 LQENDTTLVKTKELIKNY--ITARIM----AKRPFDKKSNSALFRAVGEGNAQLV 157
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 7e-04
Identities = 41/240 (17%), Positives = 75/240 (31%), Gaps = 74/240 (30%)
Query: 9 DNEI-WVYYKNREEWKDL--------RPIPQDDGPTPVVAIAYSQKCNLFSDELS----- 54
D +I W+ KN + + I + + + + EL
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 55 --YIEGL-ISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNY 111
Y L + +V+N AW F ++ C KI + + + ++
Sbjct: 241 KPYENCLLVLLNVQNAKAW--NAFNLS----------------C--KILLTTRFKQVTDF 280
Query: 112 LRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL-KALN---KDLHQE------ 161
L A ++ LT D + +L K L+ +DL +E
Sbjct: 281 LSAATTTHISLDHHSMTLTPD-------------EVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 162 --LKYIGEKIK------ENSKNYQVWRHRQII---VEWMGEPDEELAL--TAAILAQDAK 208
L I E I+ +N K+ + II + + EP E + ++ A
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAH 386
Score = 27.1 bits (59), Expect = 6.7
Identities = 30/209 (14%), Positives = 56/209 (26%), Gaps = 55/209 (26%)
Query: 45 KCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPK 104
CN L ++ L+ N WT R + + I R ++ P
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPN---WTSR----SDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 105 NES------PWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR--EILKALNK 156
N NA S + L T + + + L
Sbjct: 244 ENCLLVLLNVQN---AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 157 DLHQEL--KYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEE-------LALTAAILAQDA 207
D + L KY+ + ++ P E L++ A +
Sbjct: 301 DEVKSLLLKYLDCRPQD-------------------LPREVLTTNPRRLSIIAESIRDGL 341
Query: 208 KNYHAWQH---------RQWVINLLDDDD 227
+ W+H + +N+L+ +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Score = 26.7 bits (58), Expect = 8.8
Identities = 34/247 (13%), Positives = 65/247 (26%), Gaps = 65/247 (26%)
Query: 19 REEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVIN 78
+EE + T + K ++ + +R N +
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQE------EMVQKFVEEVLRINYKFLMSPI--- 98
Query: 79 HTTQFTPEVIQREIDYCRDKIQ-----IAPKN---ESPWNYLRGAVVN------------ 118
T Q P ++ R RD++ A N P+ LR A++
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 119 --AGEKSERAL-ALTADAITMNPANYTVW----QYRR--EILKALNKDLHQELKYIGEKI 169
+G K+ AL + + W +L+ L K L+Q I
Sbjct: 159 LGSG-KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ----IDPNW 213
Query: 170 KENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLD-DD-- 226
S + + R + + L + + + LL +
Sbjct: 214 TSRSDHSSNIKLR---IHSIQAELRRL----------------LKSKPYENCLLVLLNVQ 254
Query: 227 DRGVLEY 233
+
Sbjct: 255 NAKAWNA 261
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 39.1 bits (91), Expect = 8e-04
Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 13/180 (7%)
Query: 39 AIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDK 98
Y K ++ S + S ++ WT+ N +R
Sbjct: 113 VQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQ--------NERAKVCFEKA 164
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTA--DAITMNPANYTVWQYRREILKALNK 156
++ PKN + L A A+ AI +NP N + L + +
Sbjct: 165 LEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE 224
Query: 157 DLHQE---LKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAW 213
+ +E K + E +++ V R EPD+ + L L N +
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 38.2 bits (89), Expect = 0.001
Identities = 10/103 (9%), Positives = 32/103 (31%), Gaps = 1/103 (0%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
+ ++ +Q AP N + + + AL + + + N +
Sbjct: 74 YLFYKELLQKAPNNVDCLEAC-AEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY 132
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDE 194
+ ++L+ +K+ +K + + ++
Sbjct: 133 YLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEK 175
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 37.9 bits (89), Expect = 0.002
Identities = 14/125 (11%), Positives = 39/125 (31%), Gaps = 2/125 (1%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
+C + P N L ++ + +R+ + AI NP + +
Sbjct: 19 ERHCMQLWRQEPDNTGVLLLL-SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 77
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211
K + L + +++ ++ + + + G+ + + + L + Y
Sbjct: 78 KERGQ-LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136
Query: 212 AWQHR 216
Sbjct: 137 VRSDL 141
Score = 32.1 bits (74), Expect = 0.13
Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 2/125 (1%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
I++ R +++ P + L A + A E A+ A+ NP Y V +L
Sbjct: 87 IEHYRHALRLKPDFIDGYINL-AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 145
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211
KAL + L + + I+ W + + GE + + D
Sbjct: 146 KALGR-LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204
Query: 212 AWQHR 216
A+ +
Sbjct: 205 AYINL 209
Score = 31.7 bits (73), Expect = 0.18
Identities = 18/144 (12%), Positives = 39/144 (27%), Gaps = 4/144 (2%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
+ + ++P + L V + A+ AI + P + L
Sbjct: 223 VAAYLRALSLSPNHAVVHGNL-ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281
Query: 152 KALNKDLHQE-LKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY 210
K E ++ + + I G +E + L L +
Sbjct: 282 KEKGS--VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 339
Query: 211 HAWQHRQWVINLLDDDDRGVLEYE 234
A + V+ ++ Y+
Sbjct: 340 AAHSNLASVLQQQGKLQEALMHYK 363
Score = 30.6 bits (70), Expect = 0.39
Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 4/126 (3%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
I+ P W+ L G V NA + A+ A+T++P + +L
Sbjct: 155 KACYLKAIETQPNFAVAWSNL-GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213
Query: 152 KALNKDLHQE-LKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY 210
K + + + + V + + G D + +
Sbjct: 214 KEARI--FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271
Query: 211 HAWQHR 216
A+ +
Sbjct: 272 DAYCNL 277
Score = 27.5 bits (62), Expect = 3.6
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 1/90 (1%)
Query: 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183
E A P N V I + L + + IK+N + + +
Sbjct: 16 EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR-LDRSAHFSTLAIKQNPLLAEAYSNLG 74
Query: 184 IIVEWMGEPDEELALTAAILAQDAKNYHAW 213
+ + G+ E + L +
Sbjct: 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGY 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 36.4 bits (84), Expect = 0.006
Identities = 12/140 (8%), Positives = 34/140 (24%), Gaps = 2/140 (1%)
Query: 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYR 147
RE+ R ++ P++ W L + + ++P +
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLML-ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 148 REILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207
+ + + + ++ + +E G+ + A
Sbjct: 64 GRVRWTQQ-RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122
Query: 208 KNYHAWQHRQWVINLLDDDD 227
+ + L D
Sbjct: 123 EEPYITAQLLNWRRRLCDWR 142
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 34.6 bits (80), Expect = 0.017
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 65 RNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSE 124
+ W F + + ++ +++R D +A YL ++ G+
Sbjct: 176 KEQWGWNIVEFYLGNISE--QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233
Query: 125 RALALTADAITMNPANYTVWQYRREILKALNKD 157
A AL A+ N N+ +Y L L +D
Sbjct: 234 -ATALFKLAVANNVHNFVEHRYALLELSLLGQD 265
Score = 26.1 bits (58), Expect = 9.3
Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 4/133 (3%)
Query: 96 RDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALN 155
+ + RG + ++ A + A+ + P V+ Y L
Sbjct: 33 ASRALTDDERAQLLYE-RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91
Query: 156 KDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDE-ELALTAAILAQDAKNYHAWQ 214
+ ++ + +R I + + G + L A D +
Sbjct: 92 N-FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY-QDDPNDPFRSL 149
Query: 215 HRQWVINLLDDDD 227
LD+
Sbjct: 150 WLYLAEQKLDEKQ 162
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 33.4 bits (77), Expect = 0.056
Identities = 16/136 (11%), Positives = 41/136 (30%), Gaps = 3/136 (2%)
Query: 100 QIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLH 159
Q+ +E + G A+ + + + + + R E +
Sbjct: 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE--P 170
Query: 160 QE-LKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQW 218
++ + + K S N + + + +G+ + L+ L D + + H +
Sbjct: 171 RKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 230
Query: 219 VINLLDDDDRGVLEYE 234
V L +
Sbjct: 231 VKKLNKLIESAEELIR 246
Score = 32.6 bits (75), Expect = 0.087
Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 15/157 (9%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
+ I + + RG ++ K + A + NP+ + +++
Sbjct: 57 LPDLTKVIALKMDFTAARLQ-RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115
Query: 152 KALNKDLHQE--------------LKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELA 197
KA + + ++ + ++ + ++ R GEP + ++
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175
Query: 198 LTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEYE 234
A + N A+ + L D + + E
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR 212
Score = 30.3 bits (69), Expect = 0.45
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
I C + +Q+ P N + R E + A+ A N + + + +
Sbjct: 292 IRICSEVLQMEPDNVNALKD-RAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350
Query: 152 KALNK 156
+ L +
Sbjct: 351 RLLKQ 355
Score = 29.2 bits (66), Expect = 1.3
Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 1/112 (0%)
Query: 111 YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIK 170
G + A + AL+ A+ +P NY + R + A+ K L + + I
Sbjct: 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK-SKAALPDLTKVIA 65
Query: 171 ENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINL 222
R ++ G+ DE +L + + ++
Sbjct: 66 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117
Score = 28.4 bits (64), Expect = 2.2
Identities = 12/98 (12%), Positives = 28/98 (28%), Gaps = 6/98 (6%)
Query: 92 IDYCRDKIQIAPKNESPWNYL---RGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148
++ P + EK A+ + ++ + M P N + R
Sbjct: 254 TSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313
Query: 149 EILKALNKDLHQE-LKYIGEKIKENSKNYQVWRHRQII 185
E + E ++ + N + Q+ +
Sbjct: 314 EAYLIEEM--YDEAIQDYEAAQEHNENDQQIREGLEKA 349
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 33.2 bits (76), Expect = 0.059
Identities = 14/137 (10%), Positives = 38/137 (27%), Gaps = 7/137 (5%)
Query: 92 IDYCRDKIQIAPKNESPWN---YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148
++P + RG + A+ AI ++P +
Sbjct: 7 EPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNIS 66
Query: 149 EILKALNKDLHQE-LKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDE-ELALTAAILAQD 206
+ ++ +++ + ++ + + R E +G + L+ L D
Sbjct: 67 ACYISTGD--LEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGD 124
Query: 207 AKNYHAWQHRQWVINLL 223
+ +N
Sbjct: 125 FDGASIEPMLERNLNKQ 141
Score = 29.3 bits (66), Expect = 1.1
Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 4/108 (3%)
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
+ P+N P+ L ++ K + A + P V + EIL
Sbjct: 337 QSLNPENVYPYIQL-ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD-- 393
Query: 159 HQE-LKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQ 205
+K + ++ ++ + + L +
Sbjct: 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 33.4 bits (76), Expect = 0.061
Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 11/131 (8%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
+ + + A A+ + S A L + A+ + P W E+
Sbjct: 88 LQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVY 147
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELA---LTAAI------ 202
+ KN ++ +++ + + + ++
Sbjct: 148 WKKGD--VTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205
Query: 203 LAQDAKNYHAW 213
+ D + +W
Sbjct: 206 VQMDVLDGRSW 216
Score = 31.5 bits (71), Expect = 0.22
Identities = 15/159 (9%), Positives = 43/159 (27%), Gaps = 12/159 (7%)
Query: 62 HDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYL--------- 112
N + R + + + + + +Q+ + W L
Sbjct: 170 KVSLQNLSMVLRQ-LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYF 228
Query: 113 -RGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKE 171
G +++ A A +N + R + K + L+ +
Sbjct: 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES-YGEALEGFSQAAAL 287
Query: 172 NSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNY 210
+ + + Q ++E++ L + ++
Sbjct: 288 DPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSM 326
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 32.1 bits (73), Expect = 0.091
Identities = 17/141 (12%), Positives = 42/141 (29%), Gaps = 3/141 (2%)
Query: 79 HTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNP 138
+ + + ++ +DKI+ P+N W L G +L A+ +
Sbjct: 17 LHQFASQQNPEAQLQALQDKIRANPQNSEQWALL-GEYYLWQNDYSNSLLAYRQALQLRG 75
Query: 139 ANYTVWQYRREILKALNK--DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEEL 196
N ++ +L Q I + + +S + +
Sbjct: 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI 135
Query: 197 ALTAAILAQDAKNYHAWQHRQ 217
L ++ ++ + Q +
Sbjct: 136 ELWQKVMDLNSPRINRTQLVE 156
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 32.2 bits (74), Expect = 0.099
Identities = 15/137 (10%), Positives = 44/137 (32%), Gaps = 2/137 (1%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
I+ K+ + + Y G ++ + A+ A+ + ++
Sbjct: 60 IETYFSKVNATKAKSADFEY-YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211
+ ++Y+ ++I+ + + +V+ + E + + +L Y
Sbjct: 119 YNK-GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177
Query: 212 AWQHRQWVINLLDDDDR 228
+ R D D +
Sbjct: 178 GYLWRARANAAQDPDTK 194
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 32.4 bits (74), Expect = 0.11
Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 11/127 (8%)
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
++ P+N P+ + K + L ++A P V + EIL D
Sbjct: 331 KELDPENIFPYIQ-LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK-NDF 388
Query: 159 HQELKYIGEKIKENSKNYQVWRHR---------QIIVEWMGEPDEELALTAAILAQDAKN 209
+ LK I+ +K ++ + E L D ++
Sbjct: 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448
Query: 210 YHAWQHR 216
A
Sbjct: 449 EQAKIGL 455
Score = 30.9 bits (70), Expect = 0.38
Identities = 15/125 (12%), Positives = 43/125 (34%), Gaps = 3/125 (2%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
+ + I++ P+ S + Y ++ S A+ ++ N +V+ Y R +
Sbjct: 257 HEDIKKAIELFPRVNS-YIY-MALIMADRNDSTEYYNYFDKALKLDSNNSSVY-YHRGQM 313
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211
+ ++ Q K + + + +N + + + D+ L + + +
Sbjct: 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE 373
Query: 212 AWQHR 216
Sbjct: 374 VPNFF 378
Score = 30.9 bits (70), Expect = 0.41
Identities = 10/115 (8%), Positives = 33/115 (28%), Gaps = 9/115 (7%)
Query: 88 IQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYR 147
+ + P+ N+ ++ ++AL AI + ++
Sbjct: 354 FDDCETLFSEAKRKFPEAPEVPNF-FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412
Query: 148 REILKALN--------KDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDE 194
++ ++ + + + K + ++ Q + + DE
Sbjct: 413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467
Score = 27.0 bits (60), Expect = 5.5
Identities = 16/146 (10%), Positives = 40/146 (27%), Gaps = 8/146 (5%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
I Y +++ N A + ++ + ++ A+ + P V R
Sbjct: 26 IKYYNWALELKEDPVFYSN--LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83
Query: 152 KALNKDLHQE----LKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDA 207
+ L K + L + N + + R + + M + E+ A
Sbjct: 84 EGLGK--FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPT 141
Query: 208 KNYHAWQHRQWVINLLDDDDRGVLEY 233
+ + + +
Sbjct: 142 ELSTQPAKERKDKQENLPSVTSMASF 167
Score = 26.2 bits (58), Expect = 9.9
Identities = 8/113 (7%), Positives = 33/113 (29%), Gaps = 7/113 (6%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERAL-ALTADAITMNPANYTVWQYRREI 150
++ +++ P R + K A+ L+ ++ + + ++
Sbjct: 59 VEMSTKALELKPDYSKVLLR-RASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN 117
Query: 151 LKALNKDLHQE-----LKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELAL 198
L +E + +++ + + +Q + + +
Sbjct: 118 LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 32.0 bits (73), Expect = 0.16
Identities = 14/151 (9%), Positives = 40/151 (26%), Gaps = 17/151 (11%)
Query: 99 IQIAPKNESPWN--------------YLRGAVVNAGEKSERALALTADAITMNPANYTVW 144
++ P + A+A + + + +
Sbjct: 121 LKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180
Query: 145 QYRREILKALNKDLHQE-LKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203
+ R E + ++ + + K + N + + + +G+ + L+ L
Sbjct: 181 ELRAECFIKEGE--PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238
Query: 204 AQDAKNYHAWQHRQWVINLLDDDDRGVLEYE 234
D + + H + V L +
Sbjct: 239 KLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269
Score = 30.8 bits (70), Expect = 0.40
Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
I + +++ + LR + +A++ A + N + +
Sbjct: 163 IAFLDKILEVCVWDAELR-ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLY 221
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQII 185
L D L + E +K + + + + H + +
Sbjct: 222 YQLG-DHELSLSEVRECLKLDQDHKRCFAHYKQV 254
Score = 29.7 bits (67), Expect = 0.77
Identities = 13/140 (9%), Positives = 43/140 (30%), Gaps = 16/140 (11%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
I + ++ N + Y + E +L+ + + ++ + + + +++
Sbjct: 197 ISDLKAASKLKNDNTEAF-YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK 255
Query: 152 K----------ALNKDLHQE-LKYIGEKIKENSKN----YQVWRHRQIIVEWMGEPDEEL 196
K + + + +K + +P E +
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315
Query: 197 ALTAAILAQDAKNYHAWQHR 216
+ + +L + N +A + R
Sbjct: 316 RVCSEVLQMEPDNVNALKDR 335
Score = 29.7 bits (67), Expect = 0.79
Identities = 13/121 (10%), Positives = 36/121 (29%), Gaps = 4/121 (3%)
Query: 92 IDYCRDKIQIAPKNESPWN---YLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR 148
++ P + EK A+ + ++ + M P N + R
Sbjct: 277 TSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336
Query: 149 EILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208
E + + ++ + N + Q+ + + + + + ++AK
Sbjct: 337 EAYLIE-EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395
Query: 209 N 209
Sbjct: 396 K 396
Score = 26.6 bits (59), Expect = 8.9
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 1/99 (1%)
Query: 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183
AL+ A+ +P NY + R + A+ K L + + I+ R
Sbjct: 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK-SKAALPDLTKVIQLKMDFTAARLQRG 101
Query: 184 IIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINL 222
++ G+ DE +L + + + +I
Sbjct: 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 30.0 bits (68), Expect = 0.22
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRR--E 149
+ + +Q P + YL G ++AL AI +NP + + + +
Sbjct: 20 LQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMD 79
Query: 150 ILKALNKDLHQELKY 164
IL NKD++ +L++
Sbjct: 80 ILNFYNKDMYNQLEH 94
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 30.7 bits (70), Expect = 0.32
Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 7/125 (5%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
++ P + S G +V + +E L+ + + P+N W
Sbjct: 42 YKLTSVVMEKDPFHASCLPVHIGTLVELNKANE-LFYLSHKLVDLYPSNPVSWFAVGCYY 100
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTA---AILAQDAK 208
+ +Y+ + W E D+ A+ A A
Sbjct: 101 LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ--AMAAYFTAA-QLMKG 157
Query: 209 NYHAW 213
+
Sbjct: 158 CHLPM 162
Score = 28.0 bits (63), Expect = 2.9
Identities = 20/118 (16%), Positives = 31/118 (26%), Gaps = 8/118 (6%)
Query: 91 EIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREI 150
E K E N L G V +K AL A+ + P N + + I
Sbjct: 221 EKIKAIGNEVTVDKWEPLLNNL-GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYI 279
Query: 151 LKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAK 208
+ + Y + + +E E A + D K
Sbjct: 280 HSLMGN-FENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE------AYIGADIK 330
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 30.5 bits (68), Expect = 0.46
Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 2/125 (1%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
+ R +++ P+ + + L +V+ K + AL +AI ++P + L
Sbjct: 29 VRLYRKALEVFPEFAAAHSNL-ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211
K + + L+ I+ N + I + G E +A L
Sbjct: 88 KEMQD-VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 146
Query: 212 AWQHR 216
A+ +
Sbjct: 147 AYCNL 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 29.3 bits (66), Expect = 0.52
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
+ + + + L GA + E+AL + M+ + E
Sbjct: 38 QKIFQALCMLDHYDARYFLGL-GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96
Query: 152 KALNK 156
L
Sbjct: 97 LQLGD 101
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 28.9 bits (65), Expect = 0.64
Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREI 150
+ ++ P +++ + + N G + + L I + T+ Y++ I
Sbjct: 47 EAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ-GVELLLKIIAETSDDETIQSYKQAI 104
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 29.8 bits (67), Expect = 0.73
Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 6/180 (3%)
Query: 39 AIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDK 98
A K +L++ + L + + W ++ T F + +D
Sbjct: 136 AKCLLTKEDLYNRSSACR-YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDG 194
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQY--RREILKALNK 156
K E+ YLRG V +RA +A+ ++ Y + +L A +
Sbjct: 195 ---GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEE 251
Query: 157 DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHR 216
KE++ + ++ + + + K+ +
Sbjct: 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311
Score = 29.8 bits (67), Expect = 0.89
Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 5/115 (4%)
Query: 66 NNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125
++A+ + +++ + ++R DY I K+ + + +
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLS-SINGLEKSSDLLLC-KADTLFVRSRFID 323
Query: 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEK-IKENSKNYQVW 179
LA+T + ++P N V+ L + +L I + + + W
Sbjct: 324 VLAITTKILEIDPYNLDVYPLHLASLHESGE--KNKLYLISNDLVDRHPEKAVTW 376
Score = 28.7 bits (64), Expect = 2.2
Identities = 7/102 (6%), Positives = 21/102 (20%), Gaps = 7/102 (6%)
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNK-- 156
++ P+ +L G A + + + + + +
Sbjct: 434 ARLFQGTHLPYLFL-GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQ 492
Query: 157 ----DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDE 194
L + + W + + D
Sbjct: 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534
Score = 26.7 bits (59), Expect = 8.1
Identities = 12/150 (8%), Positives = 35/150 (23%), Gaps = 9/150 (6%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
Y + P+ W + ++A++ A + + + +
Sbjct: 393 RRYFSKSSTMDPQFGPAW-IGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQH 451
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEE-------LALTAAILA 204
L + +Y+ + + ++ + L L +
Sbjct: 452 MQLGN-ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510
Query: 205 QDAKNYHAWQHRQWVINLLDDDDRGVLEYE 234
+ W + L D +
Sbjct: 511 NEKPWAATWANLGHAYRKLKMYDAAIDALN 540
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 29.6 bits (67), Expect = 0.94
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
Q AP+ E W L G EK A+ A ++P + V +
Sbjct: 48 CQAAPEREEAWRSL-GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 105
Score = 28.4 bits (64), Expect = 2.0
Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 26/124 (20%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVW------- 144
R +++ P + WN L GA + G + + AL A+ +NP V
Sbjct: 192 AANLRRAVELRPDDAQLWNKL-GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250
Query: 145 -----------QYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPD 193
Q R I + + + +W ++++ M PD
Sbjct: 251 SNMSQYDLAAKQLVRAI--YMQVGGTTPTGEASREATRS-----MWDFFRMLLNVMNRPD 303
Query: 194 EELA 197
Sbjct: 304 LVEL 307
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer,
hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A*
1r4k_A 1si2_A 1si3_A
Length = 861
Score = 29.7 bits (66), Expect = 1.0
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 59 LISHDVRNNSAWTQRYFVINHTTQFTPEVIQR 90
L SH ++ Y V+ +F+ + +Q
Sbjct: 752 LCSHAGIQGTSRPSHYHVLWDDNRFSSDELQI 783
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 28.7 bits (65), Expect = 1.4
Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 5/119 (4%)
Query: 99 IQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDL 158
I+ K+ + ++ +E+ L +NP + + D
Sbjct: 99 IEYYQKSLTEHR--TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK-SDW 155
Query: 159 HQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELA-LTAAILAQDAKNYHAWQHR 216
+K E IK ++ + + +R + + E +A AI +D A+ +
Sbjct: 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI-EKDPNFVRAYIRK 213
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 28.5 bits (64), Expect = 2.1
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
+ +Q PK+ W YL G E+ A++ + + P N T
Sbjct: 84 VLLFEAAVQQDPKHMEAWQYL-GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 142
Query: 152 KALNKD 157
+
Sbjct: 143 TNESLQ 148
Score = 26.9 bits (60), Expect = 5.4
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
+D + + P + WN L GA + G +SE A+A A+ + P
Sbjct: 237 VDCFTAALSVRPNDYLLWNKL-GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295
Query: 152 KALNK 156
L
Sbjct: 296 INLGA 300
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 27.0 bits (60), Expect = 2.7
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVW 144
Q P+ E W L G EK A+ A ++P + V
Sbjct: 37 ALAFEAVCQKEPEREEAWRSL-GLTQAENEKDGLAIIALNHARMLDPKDIAVH 88
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil,
family 84 glycoside hydrolase, carbohydrate binding
module; 2.10A {Clostridium perfringens} PDB: 2cbj_A*
2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A*
2ydr_A* 2ydq_A*
Length = 594
Score = 27.9 bits (61), Expect = 3.2
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 93 DYCRDKIQIAPKN---ESPWNYLRGAVVNA---GEKSERALALTADAITMNPANYTVWQY 146
DY + K+ + P + + Y+ VN E S+ ++ AD + N NY +
Sbjct: 371 DYFKGKLALGPMHGLDKGLNQYVDFFTVNPMEHAELSKISIHTAAD-YSWNMDNYDYDKA 429
Query: 147 RREILKALNKDLHQELKYIGE 167
+ L DL +++K
Sbjct: 430 WNRAIDMLYGDLAEDMKVFAN 450
>1h21_A Split-soret cytochrome C; dimeric DI-heme cytochrome, stacked heme
arrangement, novel fold, novel iron-sulfur centre; HET:
HEC; 2.5A {Desulfovibrio desulfuricans} SCOP: a.138.1.3
Length = 247
Score = 27.8 bits (61), Expect = 3.2
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 20/73 (27%)
Query: 95 CRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKAL 154
C + S W Y + ++SER LTADA A EI +
Sbjct: 147 CHISV-------SKWCYENKIEATSKQRSERCGRLTADA-----AFKAA-----EI---I 186
Query: 155 NKDLHQELKYIGE 167
N + Q +
Sbjct: 187 NTKIDQGKDFKST 199
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 27.1 bits (60), Expect = 3.3
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
+ R N L A+ E+ ++A L A A + +YT + +
Sbjct: 56 EVFFRFLCIYDFYNVDYIMGL-AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114
Query: 152 KALNK 156
L
Sbjct: 115 LRLKA 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 27.2 bits (60), Expect = 3.3
Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
+ + + + L GA A + + A+ + M+ + E L
Sbjct: 41 HXVFQALCVLDHYDSRFFLGL-GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99
Query: 152 KALNK 156
+
Sbjct: 100 LQXGE 104
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic
binding protein, thermophilic proteins, trap- transport;
HET: MSE; 1.90A {Thermotoga maritima}
Length = 327
Score = 27.7 bits (62), Expect = 3.8
Identities = 11/87 (12%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 129 LTAD--AITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSK-NYQVWRHR-QI 184
L + I + + +I+K L ++ Q+ G + S+ + + + + +
Sbjct: 241 LPKEYQKIIEEEMDKAGIEVSLKIMKELEEEYKQKCIEKGMAVIPASEIDKEAFMEKAKQ 300
Query: 185 IVEWMGEPDEELALTAAILAQDAKNYH 211
+ +G + L + + ++H
Sbjct: 301 AYKNLGLENALNQLIKEVKGEHHHHHH 327
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation,
transcription; 1.80A {Drosophila melanogaster} PDB:
3nth_A* 3nti_A*
Length = 169
Score = 26.8 bits (59), Expect = 4.8
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 7 DEDNEIWVY---YKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNL 48
+D + V+ + N + R +P++ + C L
Sbjct: 73 LDDGKCEVHFIDFGNNAVTQQFRQLPEELAKPARYSR----HCEL 113
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex;
3.19A {Vanderwaltozyma polyspora}
Length = 1046
Score = 27.3 bits (59), Expect = 4.8
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 59 LISHDVRNNSAWTQRYFVINHTTQFTPEVIQR 90
+ SH + Y+ + Q T + +Q
Sbjct: 936 IQSHQALKGTGVPCHYWCLYDENQSTSDYLQE 967
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 25.9 bits (58), Expect = 6.7
Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 10/102 (9%)
Query: 101 IAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQ 160
+ +N + G + ++ L AI ++P W + + L L + ++
Sbjct: 1 MVDQNPEEYYL-EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER--YE 57
Query: 161 EL-----KYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELA 197
E I + E+ N VW + + ++ + E
Sbjct: 58 EAVDCYNYVI--NVIEDEYNKDVWAAKADALRYIEGKEVEAE 97
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses; 2.50A
{Geobacillus kaustophilus}
Length = 157
Score = 26.2 bits (58), Expect = 7.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 147 RREILKALNKDLHQELKYIGEKIKENSK 174
RRE+LK LNK LH+ KE +
Sbjct: 130 RREVLKQLNKQLHRPNGGRKLGRKEAEQ 157
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 26.3 bits (59), Expect = 7.9
Identities = 12/103 (11%), Positives = 33/103 (32%), Gaps = 2/103 (1%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
D ++ +N + G V+ E+ + AL A+ +N + L
Sbjct: 111 KDMFEKALRAGMENGDLFYM-LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDE 194
L + L +++ + + + + + ++
Sbjct: 170 ANEGM-LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREK 211
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function,
center for structural genomics of infectious diseases;
1.80A {Bacillus anthracis}
Length = 150
Score = 25.8 bits (57), Expect = 8.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 147 RREILKALNKDLHQELK 163
RR ILK LNK + Q +
Sbjct: 134 RRAILKLLNKKVRQHNR 150
>2r9y_A Alpha-2-antiplasmin; inhibitory serpin, plasmin inhibitor, AC
phase, glycoprotein, protease inhibitor, secreted,
serine P inhibitor, sulfation; 2.65A {Mus musculus}
Length = 430
Score = 26.5 bits (59), Expect = 9.2
Identities = 3/32 (9%), Positives = 11/32 (34%)
Query: 147 RREILKALNKDLHQELKYIGEKIKENSKNYQV 178
+ + L+ + L ++ +N +
Sbjct: 68 LHSLHRVLHMNTGSCLPHLLSHFYQNLGPGTI 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.408
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,850,531
Number of extensions: 225795
Number of successful extensions: 892
Number of sequences better than 10.0: 1
Number of HSP's gapped: 752
Number of HSP's successfully gapped: 148
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.7 bits)