RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4772
(235 letters)
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase
alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 315
Score = 70.4 bits (171), Expect = 7e-15
Identities = 71/136 (52%), Positives = 91/136 (66%), Gaps = 1/136 (0%)
Query: 98 KIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD 157
+I + K ++Y R AV+ E+SERA LT DAI +N ANYTVW +RR +LK+L KD
Sbjct: 35 QIIYSDKFRDVYDYFR-AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 93
Query: 158 LHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQ 217
LH+E+ YI I+E KNYQVW HR+++VEW+ +P +EL A IL QDAKNYHAWQHRQ
Sbjct: 94 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 153
Query: 218 WVINLLDDDDRGVLEY 233
WVI D +
Sbjct: 154 WVIQEFKLWDNELQYV 169
Score = 68.4 bits (166), Expect = 3e-14
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 26/217 (11%)
Query: 9 DNEIWVYYKNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNS 68
D+ +V Y++R EW D+ P+PQ+DGP PVV I YS K F D Y ++ D
Sbjct: 5 DSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDK---FRDVYDYFRAVLQRD----- 56
Query: 69 AWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALA 128
E +R RD I++ N + W++ R + + + +
Sbjct: 57 -----------------ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMN 99
Query: 129 LTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEW 188
I P NY VW +RR +++ L + ++ KNY W+HRQ +++
Sbjct: 100 YITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQE 158
Query: 189 MGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDD 225
D EL +L +D +N W R +VI+
Sbjct: 159 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 195
Score = 34.5 bits (78), Expect = 0.008
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 12/153 (7%)
Query: 44 QKCNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDK-IQIA 102
Q+ L+ +EL Y++ L+ DVRNNS W QRYFVI++TT + + + I++
Sbjct: 157 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 216
Query: 103 PKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQEL 162
P NES WNYL+G + + G L + + ++ + + +I + + ++
Sbjct: 217 PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276
Query: 163 KYIGEKIKENS-----------KNYQVWRHRQI 184
+ I K E K Y + R +
Sbjct: 277 EDILNKALELCEILAKEKDTIRKEYWRYIGRSL 309
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase
alpha-subunit, N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 334
Score = 69.3 bits (168), Expect = 2e-14
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 114 GAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKD---------LHQELKY 164
AGE E L LT+ + NP T+W RRE+L+ L + + EL +
Sbjct: 36 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGF 95
Query: 165 IGEKIKENSKNYQVWRHRQIIVEWMGEPD--EELALTAAILAQDAKNYHAWQHRQWVINL 222
+ ++ N K+Y W HR ++ + EP+ EL L A L D +N+H W +R++V
Sbjct: 96 LESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ 155
Query: 223 LDDDDRGVLEY 233
L +
Sbjct: 156 AAVAPAEELAF 166
Score = 45.4 bits (106), Expect = 2e-06
Identities = 29/159 (18%), Positives = 66/159 (41%), Gaps = 11/159 (6%)
Query: 86 EVIQREIDYCRDKIQIAPKNESPWNYLRGAVVNAGEKS---------ERALALTADAITM 136
E+ + ++ + P + WN R + + + + L + +
Sbjct: 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 102
Query: 137 NPANYTVWQYRREILKALNK-DLHQELKYIGEKIKENSKNYQVWRHRQIIVEWM-GEPDE 194
NP +Y W +R +L L + + +EL+ ++ + +N+ W +R+ + P E
Sbjct: 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162
Query: 195 ELALTAAILAQDAKNYHAWQHRQWVINLLDDDDRGVLEY 233
ELA T +++ ++ NY +W +R ++ L +
Sbjct: 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201
Score = 29.2 bits (64), Expect = 0.44
Identities = 19/156 (12%), Positives = 36/156 (23%), Gaps = 12/156 (7%)
Query: 17 KNREEWKDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISHDVRNNSAWTQRYFV 76
N W + P P N+ EL ++ D + SAW ++
Sbjct: 176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235
Query: 77 INHTTQFTPEVIQRE-----------IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSER 125
+ + E ++ L ++ +
Sbjct: 236 LGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL-MRALDPLLYEKE 294
Query: 126 ALALTADAITMNPANYTVWQYRREILKALNKDLHQE 161
L + ++P R N L E
Sbjct: 295 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME 330
Score = 28.8 bits (63), Expect = 0.59
Identities = 25/208 (12%), Positives = 52/208 (25%), Gaps = 28/208 (13%)
Query: 46 CNLFSDELSYIEGLISHDVRNNSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKN 105
L + L + + + + E+ + I N
Sbjct: 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 177
Query: 106 ESPWNYLRGAVVNAGEKSE-------------RALALTADAITMNPANYTVWQYRREILK 152
S W+Y + + + + L L +A +P + + W Y R +L
Sbjct: 178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237
Query: 153 ALN---------------KDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELA 197
+ + K + E EN ++ + E L
Sbjct: 238 RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 297
Query: 198 LTAAILAQDAKNYHAWQHRQWVINLLDD 225
+ + A D + L +
Sbjct: 298 YFSTLKAVDPMRAAYLDDLRSKFLLENS 325
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 40.8 bits (95), Expect = 5e-05
Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 4/143 (2%)
Query: 92 IDYCRDKIQIAPKNESPWNYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREIL 151
++ + I+ +PK+ S + ++ ERA +I + P R ++
Sbjct: 16 LELLIEAIKASPKDASLRSSF-IELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 74
Query: 152 KALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAILAQDAKNYH 211
KA K+ ++ + + ++ L I +
Sbjct: 75 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134
Query: 212 AWQHRQWVINLLDDDDR--GVLE 232
+ ++ D DDR G +E
Sbjct: 135 LANDTSFS-DVRDIDDRLGGYIE 156
Score = 28.5 bits (63), Expect = 0.60
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 3/105 (2%)
Query: 124 ERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQ 183
++AL L +AI +P + ++ E+L D + + + + IK + +
Sbjct: 13 QQALELLIEAIKASPKDASLRSSFIELLCIDG-DFERADEQLMQSIKLFPEYLPGASQLR 71
Query: 184 IIVEWMGEPDEELALTAAILAQDAKNYHAWQHRQWVINLLDDDDR 228
+V+ + A A+ NL
Sbjct: 72 HLVKAAQARKDFAQ--GAATAKVLGENEELTKSLVSFNLSMVSQD 114
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 29.7 bits (66), Expect = 0.12
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Query: 67 NSAWTQRYFVINHTTQFTPEVIQREIDYCRDKIQIAPKNESPWN-YLRGAVVNAGEKSER 125
S TQ + + I++ I + + K E + ++ E+
Sbjct: 31 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 90
Query: 126 ALALTADAITMNPANYTVWQYRREILKALNKD 157
AL + P N + R I KA+ KD
Sbjct: 91 ALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 122
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 140
Score = 29.2 bits (65), Expect = 0.25
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 143 VWQYRREILKALNKDLHQELKYIGEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAI 202
W R E+ K + L++E Y+ ++ + R I+++W+ E E L
Sbjct: 7 SWANREEVWKIM---LNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRET 63
Query: 203 L 203
Sbjct: 64 F 64
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein
TDRKH {Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 27.2 bits (60), Expect = 0.65
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 7 DEDNEIWVY---YKNREE--WKDLRPIPQDDGPTPVVAIAYSQKCNL 48
E+ + +Y + + + KDLR + D P AI +C+L
Sbjct: 51 LENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAI----ECSL 93
>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 25.7 bits (56), Expect = 3.6
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 23 KDLRPIPQDDGPTPVVAIAYSQKCNLFSDELSYIEGLISH--DVRNNSAWTQRYFVINHT 80
+ L P Q P+ V Y C+ L YI G IS S+ +++F IN
Sbjct: 6 QSLIPFVQLP-PSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRR 64
Query: 81 TQFTPEVIQREIDYCRDKIQIAPKNESPWNYL 112
+V + + + +++ P+ L
Sbjct: 65 PCDPAKVCR----LVNEVYHMYNRHQYPFVVL 92
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's
sarcoma-associated herpesvirus [TaxId: 37296]}
Length = 132
Score = 25.3 bits (55), Expect = 5.0
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 149 EILKALNKDLHQELKYI-GEKIKENSKNYQVWRHRQIIVEWMGEPDEELALTAAIL 203
I + L E +++ + + + R+++ WM +E L ++
Sbjct: 5 RIFYNI---LEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVV 57
>d1qs1a2 d.166.1.1 (A:265-461) Vegetative insecticidal protein 2
(VIP2) {Bacillus cereus [TaxId: 1396]}
Length = 197
Score = 25.5 bits (55), Expect = 5.5
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 110 NYLRGAVVNAGEKSERALALTADAITMNPANYTVWQYRREILKALNKDLHQELKYIGE 167
NYLR + EK + + +DA+ P + YR + + L + +
Sbjct: 48 NYLRNQGGSGNEKLDAQIKNISDALGKKPIPENITVYRWCGMPEFGYQISDPLPSLKD 105
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 24.7 bits (54), Expect = 6.4
Identities = 4/34 (11%), Positives = 8/34 (23%)
Query: 124 ERALALTADAITMNPANYTVWQYRREILKALNKD 157
A N V + + + K+
Sbjct: 90 SMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKE 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.408
Gapped
Lambda K H
0.267 0.0396 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 960,008
Number of extensions: 45144
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 35
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)