BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4773
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 28/37 (75%), Gaps = 2/37 (5%)
Query: 13 RYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 49
+Y+L+GPK+G +EV + +P P N+KR++ G+F VS
Sbjct: 211 KYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVS 245
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 28/37 (75%), Gaps = 2/37 (5%)
Query: 13 RYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 49
+Y+L+GPK+G +EV + +P P N+KR++ G+F VS
Sbjct: 202 KYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVS 236
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 28/37 (75%), Gaps = 2/37 (5%)
Query: 13 RYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVS 49
+Y+L+GPK+G +EV + +P P N+KR++ G+F VS
Sbjct: 211 KYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVS 245
>pdb|3IT8|D Chain D, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|E Chain E, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|F Chain F, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|J Chain J, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|K Chain K, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
pdb|3IT8|L Chain L, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
Mhc-Related Tnf Binding Protein
Length = 324
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 13 RYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNF--LVSLVCPVDEYTPQLLHII 65
RYY P+ G+ + G PG P N+K+D N L LV + + Q + ++
Sbjct: 232 RYY---PEWGRKSNYEPGEPGFPWNIKKDKDANTYSLTDLVRTTSKMSSQPVCVV 283
>pdb|1HY3|A Chain A, Crystal Structure Of Human Estrogen Sulfotransferase V269e
Mutant In The Presence Of Paps
pdb|1HY3|B Chain B, Crystal Structure Of Human Estrogen Sulfotransferase V269e
Mutant In The Presence Of Paps
Length = 294
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 70 NIRKFVARFLHLLEKIPSED-VKHVVGH--FESILFLQGTRYTLL 111
+IRK V + +H LE+ PSE+ V ++ H F+ + T YT L
Sbjct: 198 DIRKEVIKLIHFLERKPSEELVDRIIHHTSFQEMKNNPSTNYTTL 242
>pdb|1G3M|A Chain A, Crystal Structure Of Human Estrogen Sulfotransferase In
Complex With In-Active Cofactor Pap And 3,5,3',5'-
Tetrachloro-Biphenyl-4,4'-Diol
pdb|1G3M|B Chain B, Crystal Structure Of Human Estrogen Sulfotransferase In
Complex With In-Active Cofactor Pap And 3,5,3',5'-
Tetrachloro-Biphenyl-4,4'-Diol
Length = 294
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 70 NIRKFVARFLHLLEKIPSED-VKHVVGH--FESILFLQGTRYTLL 111
+IRK V + +H LE+ PSE+ V ++ H F+ + T YT L
Sbjct: 198 DIRKEVIKLIHFLERKPSEELVDRIIHHTSFQEMKNNPSTNYTTL 242
>pdb|1II2|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
pdb|1II2|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
Length = 524
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 6/39 (15%)
Query: 119 IVDALHSVDGSLKGSSDVEEYNGAYYFGSPISKHLARVP 157
I+DA+H DG+L ++ EEY G +G I K++A+VP
Sbjct: 436 IIDAIH--DGTLD-RTEYEEYPG---WGLHIPKYVAKVP 468
>pdb|2F98|A Chain A, Crystal Structure Of The Polyketide Cyclase Aknh With
Bound Substrate And Product Analogue: Implications For
Catalytic Mechanism And Product Stereoselectivity.
pdb|2F98|B Chain B, Crystal Structure Of The Polyketide Cyclase Aknh With
Bound Substrate And Product Analogue: Implications For
Catalytic Mechanism And Product Stereoselectivity.
pdb|2F98|C Chain C, Crystal Structure Of The Polyketide Cyclase Aknh With
Bound Substrate And Product Analogue: Implications For
Catalytic Mechanism And Product Stereoselectivity.
pdb|2F98|D Chain D, Crystal Structure Of The Polyketide Cyclase Aknh With
Bound Substrate And Product Analogue: Implications For
Catalytic Mechanism And Product Stereoselectivity.
pdb|2F99|A Chain A, Crystal Structure Of The Polyketide Cyclase Aknh With
Bound Substrate And Product Analogue: Implications For
Catalytic Mechanism And Product Stereoselectivity.
pdb|2F99|B Chain B, Crystal Structure Of The Polyketide Cyclase Aknh With
Bound Substrate And Product Analogue: Implications For
Catalytic Mechanism And Product Stereoselectivity.
pdb|2F99|C Chain C, Crystal Structure Of The Polyketide Cyclase Aknh With
Bound Substrate And Product Analogue: Implications For
Catalytic Mechanism And Product Stereoselectivity.
pdb|2F99|D Chain D, Crystal Structure Of The Polyketide Cyclase Aknh With
Bound Substrate And Product Analogue: Implications For
Catalytic Mechanism And Product Stereoselectivity
Length = 153
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 117 GEIVDALHSVDGSLKGSSDVEEYNGAY-YFGSPISKHLARVP 157
GE + LH VDG + D +Y G Y G P + R P
Sbjct: 112 GEQIHLLHFVDGKIHHHRDWPDYQGTYRQLGEPWPETEHRRP 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.142 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,345,985
Number of Sequences: 62578
Number of extensions: 225269
Number of successful extensions: 523
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 515
Number of HSP's gapped (non-prelim): 9
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)