RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4773
         (160 letters)



>gnl|CDD|240369 PTZ00340, PTZ00340, O-sialoglycoprotein endopeptidase-like protein;
           Provisional.
          Length = 345

 Score = 31.2 bits (71), Expect = 0.22
 Identities = 12/24 (50%), Positives = 12/24 (50%)

Query: 75  VARFLHLLEKIPSEDVKHVVGHFE 98
           VAR L LL   P   V H V H E
Sbjct: 92  VARTLSLLWGKPLVGVNHCVAHIE 115


>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and
           metabolism].
          Length = 307

 Score = 30.8 bits (70), Expect = 0.23
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 9   FSFWRYYLKGPKQGK-SEVFIDGLPGLPDNVKRDSKGNFLVSLV---CPVDEYTPQ---L 61
             +      GP  G+   V  D  PGLPD +  D+ GN  V+ V     V  + P    L
Sbjct: 188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLL 247

Query: 62  LHIIGPFPNI 71
             I  P    
Sbjct: 248 GEIKLPVKRP 257


>gnl|CDD|236836 PRK11072, PRK11072, bifunctional glutamine-synthetase
           adenylyltransferase/deadenyltransferase; Reviewed.
          Length = 943

 Score = 28.6 bits (65), Expect = 1.8
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 59  PQLLHIIGPFPNIRKFVARFLHLLEKI 85
           P+LL       +    + R L LLE I
Sbjct: 509 PRLLEAACAREDADVTLERLLDLLEAI 535


>gnl|CDD|165939 PLN02298, PLN02298, hydrolase, alpha/beta fold family protein.
          Length = 330

 Score = 27.4 bits (61), Expect = 3.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 67  PFPNIRKFVARFLHLLEKIPSEDVKH 92
           P P I  FVARFL  L  +P+ D+  
Sbjct: 180 PIPQILTFVARFLPTLAIVPTADLLE 205


>gnl|CDD|237395 PRK13482, PRK13482, DNA integrity scanning protein DisA;
           Provisional.
          Length = 352

 Score = 27.0 bits (61), Expect = 4.0
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 12/52 (23%)

Query: 77  RFLHLLEKIPSEDVKHVVGHFESILFLQGTRYTLLVISSQGEIVDALHSVDG 128
           R L  + ++PS  ++++V HF S   LQG    LL  S     ++ L  V+G
Sbjct: 287 RLLSKIPRLPSAVIENLVEHFGS---LQG----LLAAS-----IEDLDEVEG 326


>gnl|CDD|222604 pfam14222, MOR2-PAG1_N, Cell morphogenesis N-terminal.  This family
           is the conserved N-terminal region of proteins that are
           involved in cell morphogenesis.
          Length = 538

 Score = 27.2 bits (61), Expect = 4.6
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 73  KFVA---RFLHLLEKIPSEDVKHVVGHFESILFLQGTRY 108
           +F +   RF+  LEK+  ED        E +  ++G RY
Sbjct: 76  RFTSVSDRFIAELEKLRKEDSPDAESKIELL--IRGMRY 112


>gnl|CDD|236615 PRK09709, PRK09709, exonuclease VIII; Reviewed.
          Length = 877

 Score = 27.2 bits (60), Expect = 5.3
 Identities = 10/38 (26%), Positives = 14/38 (36%)

Query: 8   NFSFWRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 45
           + +F   Y  G + G +   I G    PDN       N
Sbjct: 79  DTTFCERYELGSEDGMTWELIPGAASAPDNAHYQGNTN 116


>gnl|CDD|179922 PRK05066, PRK05066, arginine repressor; Provisional.
          Length = 156

 Score = 26.1 bits (58), Expect = 6.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 113 ISSQGEIVDAL 123
             SQGEIV AL
Sbjct: 23  FGSQGEIVTAL 33


>gnl|CDD|150245 pfam09506, Salt_tol_Pase, Glucosylglycerol-phosphate phosphatase
           (Salt_tol_Pase).  Proteins in this family are
           glucosylglycerol-phosphate phosphatases, with the gene
           symbol stpA (Salt Tolerance Protein A). A motif
           characteristic of acid phosphatases is found, but
           otherwise this family shows little sequence similarity
           to other phosphatases. This enzyme acts on the
           glucosylglycerol phosphate, product of glucosylglycerol
           phosphate synthase and immediate precursor of the
           osmoprotectant glucosylglycerol.
          Length = 381

 Score = 26.5 bits (59), Expect = 6.7
 Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 111 LVISSQGEIVDALHSVDGSLKGSSDVEE 138
           LV SS GE VD     DGSL G SD E+
Sbjct: 331 LVDSSHGE-VDRPSLKDGSLNGISDPED 357


>gnl|CDD|185549 PTZ00311, PTZ00311, phosphoenolpyruvate carboxykinase; Provisional.
          Length = 561

 Score = 26.5 bits (59), Expect = 8.1
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 6/39 (15%)

Query: 119 IVDALHSVDGSLKGSSDVEEYNGAYYFGSPISKHLARVP 157
           I+DA+H  DG LK +    EY     FG  I K  A VP
Sbjct: 478 IIDAIH--DGELKKA----EYEKFPIFGLQIPKSCAGVP 510


>gnl|CDD|224309 COG1391, GlnE, Glutamine synthetase adenylyltransferase
           [Posttranslational modification, protein turnover,
           chaperones / Signal transduction mechanisms].
          Length = 963

 Score = 26.5 bits (59), Expect = 8.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 55  DEYTPQLLHIIGPFPNIRKFVARFLHLLEKIPSE 88
           DE  P+LL      P+    + RFL  LE I + 
Sbjct: 519 DELMPRLLDAASETPDPDVTLLRFLDFLEAISTR 552


>gnl|CDD|226248 COG3725, AmpE, Membrane protein required for beta-lactamase
           induction [Defense mechanisms].
          Length = 282

 Score = 26.3 bits (58), Expect = 8.5
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 67  PFPNIRKFVARFLHLLEKIPSEDVKHV---VGHFESIL 101
           P P ++  + R LH+L+ +P          VGH E +L
Sbjct: 179 PHPRLQSGIDRVLHVLDWVPVRLAGLSYALVGHGERVL 216


>gnl|CDD|129347 TIGR00244, TIGR00244, transcriptional regulator NrdR.  Members of
           this almost entirely bacterial family contain an ATP
           cone domain (pfam03477). There is never more than one
           member per genome. Common gene symbols given include
           nrdR, ybaD, ribX and ytcG. The member from Streptomyces
           coelicolor is found upstream in the operon of the class
           II oxygen-independent ribonucleotide reductase gene nrdJ
           and was shown to repress nrdJ expression. Many members
           of this family are found near genes for riboflavin
           biosynthesis in Gram-negative bacteria, suggesting a
           role in that pathway. However, a phylogenetic profiling
           study associates members of this family with the
           presence of a palindromic signal with consensus
           acaCwAtATaTwGtgt, termed the NrdR-box, an upstream
           element for most operons for ribonucleotide reductase of
           all three classes in bacterial genomes [Regulatory
           functions, DNA interactions].
          Length = 147

 Score = 25.6 bits (56), Expect = 10.0
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 67  PFPNIRKFVARFLHLLEKIP--SEDVKHVVGHFESILFLQGTR 107
           PF N  K +   +   EK P   +D++H + H E+ L  QG R
Sbjct: 60  PF-NREKLLRGMVRACEKRPVSFDDLEHAINHIEAQLRAQGER 101


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.142    0.431 

Gapped
Lambda     K      H
   0.267   0.0756    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,423,064
Number of extensions: 774487
Number of successful extensions: 595
Number of sequences better than 10.0: 1
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 17
Length of query: 160
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 71
Effective length of database: 6,990,096
Effective search space: 496296816
Effective search space used: 496296816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)