RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4773
(160 letters)
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 64.3 bits (156), Expect = 4e-13
Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 47/150 (31%)
Query: 12 WRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCPVDEYTPQLLHIIGPFPNI 71
+Y+L+GPK+G +EV + +P P N+KR++ G+F VS +D + G
Sbjct: 210 VKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKG----- 262
Query: 72 RKFVARFLHLLEKIPSEDVKHVVGHFESILFLQGTRYTLLVISSQGEIVDALHSVDG-SL 130
+ G I++ + +
Sbjct: 263 ---------------------------------------IKFDEFGNILEVIPLPPPFAG 283
Query: 131 KGSSDVEEYNGAYYFGSPISKHLARVPLAK 160
+ ++E++G Y G+ + + K
Sbjct: 284 EHFEQIQEHDGLLYIGTLFHGSVGILVYDK 313
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 1e-05
Identities = 32/177 (18%), Positives = 53/177 (29%), Gaps = 53/177 (29%)
Query: 7 CNFSFWRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCPVDEYTP-QLLHII 65
+ W++ E ++ L P ++ F V P + P LL +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLE--PAEYRK----MFDRLSVFPPSAHIPTILLSL- 394
Query: 66 GPFPNIRKFVARFLHLLEKIPSEDVKHVVGHFE--SILFLQGTRYTL------LVISSQG 117
+ + DV VV S++ Q T+ L + +
Sbjct: 395 ---------------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 118 EIVDALHSVDGSLKGSSDVEEYNG--AY------------YFGSPISKHLARVPLAK 160
E ALH S+ V+ YN + YF S I HL + +
Sbjct: 440 ENEYALHR---SI-----VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 33.9 bits (78), Expect = 0.015
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 12 WRYYLKGPKQ-GKSEVFID---GLPGLPDNVKRDSKGNFLVSLVCP--VDEYTPQLLHII 65
W Y +KGP + +V+ G D + D N LV+ ++ + P
Sbjct: 201 WSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK 260
Query: 66 G 66
Sbjct: 261 M 261
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 32.4 bits (73), Expect = 0.041
Identities = 21/144 (14%), Positives = 36/144 (25%), Gaps = 40/144 (27%)
Query: 12 WRYYLKGPKQGKSEVFIDGLPGLPDNVKRDS-KGNFLVSLVCPVDEYTPQLLHIIGPFPN 70
Y + L DN+ D G+ +G PN
Sbjct: 246 HVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDL-----------------WVGCHPN 287
Query: 71 IRKFVARFLHLLEKIPSEDVKHVVGHFESILFLQGTRYTLLVISSQGEIVDALHSVDGS- 129
+ SE ++ E + ++ +G+
Sbjct: 288 GMRIFFY--DAENPPGSEVLRIQDILSE-----------------EPKVTVVYAE-NGTV 327
Query: 130 LKGSSDVEEYNGAYYFGSPISKHL 153
L+GS+ Y G G+ K L
Sbjct: 328 LQGSTVAAVYKGKLLIGTVFHKAL 351
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.25
Identities = 44/251 (17%), Positives = 69/251 (27%), Gaps = 113/251 (45%)
Query: 21 QGKSEVFIDGLPGL----PDNVKR--DSKGNFLVSLV-CPVD--EYTPQLLHIIG----- 66
QG ++ + + L L V L L+ +D + Q L+I+
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 67 ---P-----------FPNIRKFVARFLH------LLEKIPSEDVKHVVG----------- 95
P P I V + H LL P E ++ G
Sbjct: 223 SNTPDKDYLLSIPISCPLI--GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 96 ----------HFE-------SILFLQGTR-------YTL-------------------LV 112
F ++LF G R +L L
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 113 IS--SQGEIVDALHSVDGSLKGSSDVE--EYNGAYYF---GSPIS-----KHL------- 153
IS +Q ++ D ++ + L VE NGA G P S L
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 154 ----ARVPLAK 160
+R+P ++
Sbjct: 401 GLDQSRIPFSE 411
Score = 25.8 bits (56), Expect = 8.7
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 15/42 (35%)
Query: 67 PFPNIRK--FVARFL--------HLL----EKIPSEDVKHVV 94
PF RK F RFL HLL + I + VK+ V
Sbjct: 408 PFSE-RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 29.3 bits (66), Expect = 0.44
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 12 WRYYLKGPKQ-GKSEVFIDGLPGLPDNVKRDSKGN 45
RY L + V PG D ++ D+ G
Sbjct: 196 HRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL 230
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 27.8 bits (62), Expect = 1.6
Identities = 7/37 (18%), Positives = 9/37 (24%)
Query: 9 FSFWRYYLKGPKQGKSEVFIDGLPGLPDNVKRDSKGN 45
+ + F GLPD D G
Sbjct: 215 VEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW 251
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta
isoform; transferase, phosphoinositide 3-kinase, RTK;
HET: GD9; 3.30A {Mus musculus}
Length = 1092
Score = 27.9 bits (61), Expect = 1.7
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 54 VDEYTPQLLHIIGPFPNIRKFVARFL------------HLLEKIPSE-DVKHVVGHFESI 100
+ +Y QL+ ++ P + ++RFL L + SE V F I
Sbjct: 657 LSQYLLQLVQVLKYEPFLDCALSRFLLERALDNRRIGQFLFWHLRSEVHTPAVSVQFGVI 716
Query: 101 L--FLQGTRYTLLVISSQGEIVDALHSVDGSLKGSSD 135
L + +G+ + V+S Q E ++ L +++ +K ++
Sbjct: 717 LEAYCRGSVGHMKVLSKQVEALNKLKTLNSLIKLNAV 753
>2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene
family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1
c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A
3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A*
2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A*
2gst_A* ...
Length = 218
Score = 26.7 bits (59), Expect = 3.0
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 11/95 (11%)
Query: 1 MGQTDYCNFSFWRYYLKGPKQGKSEVFIDGLPG-LPDNVKRDSKGNFLV---------SL 50
Q + + ++ LP L + K + +
Sbjct: 101 ENQFMDSRMQLAKLCYDPDFEKLKPEYLQALPEMLKLYSQFLGKQPWFLGDKITFVDFIA 160
Query: 51 VCPVDEYTPQLLHIIGPFPNIRKFVARFLHLLEKI 85
++ + FPN++ F++RF LEKI
Sbjct: 161 YDVLERNQVFEPSCLDAFPNLKDFISRFEG-LEKI 194
>2o18_A Thiamine biosynthesis lipoprotein APBE; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.20A {Escherichia coli} PDB:
3pnd_A*
Length = 340
Score = 26.8 bits (60), Expect = 3.1
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 16/69 (23%)
Query: 102 FLQGTRYTLLVISSQG--------EIVDALHSVDGSL---KGSSDVEEYN---GAYYFGS 147
GT + + +I L + D L K S + +N +
Sbjct: 21 KTMGTFWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPW-- 78
Query: 148 PISKHLARV 156
P+S+ +A +
Sbjct: 79 PVSEAMADI 87
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6,
mechanism, cytoplasm, glycosyltransferase, nucleus;
1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A*
3c2v_A* 3c2r_A*
Length = 294
Score = 26.7 bits (60), Expect = 3.4
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 59 PQLLHIIGPFPNIRKFVARFLHLLEKIPSEDV 90
P H++ R+ V + L E +PS D
Sbjct: 1 PVYEHLLPVNGAWRQDVTNW--LSEDVPSFDF 30
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl
transferase domain, ATP-binding, nucleotide-BIND
nucleotidyltransferase; 2.40A {Escherichia coli}
Length = 498
Score = 26.8 bits (59), Expect = 3.4
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 55 DEYTPQLLHIIGPFPNIRKFVARFLHLLEKIPS 87
D P LL + + ++R LL I +
Sbjct: 57 DHLMPHLLSDVCAREDAAVTLSRITALLVGIVT 89
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 26.5 bits (59), Expect = 5.1
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 12/75 (16%)
Query: 6 YCNFSFWRYYLKGPKQ-------GKSEVFIDGLPGLPDNVKRDSKGNFLVSLVCPVDEYT 58
+F + P + G E +D +PGL + +D +V + +
Sbjct: 156 VMHFRSFVERGIIPFKDESYLTNGCLETKVDWIPGLKNFRLKD-----IVDFIRTTNPND 210
Query: 59 PQLLHIIGPFPNIRK 73
L I + K
Sbjct: 211 IMLEFFIEVADRVNK 225
>1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme,
prostaglandin D2 synthase, vaccine candidate; HET: GSH;
1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5
PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A*
2cai_A* 1u3i_A*
Length = 211
Score = 25.9 bits (57), Expect = 6.8
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 64 IIGPFPNIRKFVARFLHLLEKI 85
+ G +P I K L ++
Sbjct: 178 LTGKYPEIHKHRENLLASSPRL 199
>3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic,
heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1
c.47.1.5
Length = 224
Score = 25.6 bits (56), Expect = 8.4
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 11/95 (11%)
Query: 1 MGQTDYCNFSFWRYYLKGPKQGKSEVFIDGLPG-LPDNVKRDSKGNFLV---------SL 50
Q R + +++ LPG L K ++
Sbjct: 104 ENQVMDFRTQLIRLCYSSDHEKLKPQYLEELPGQLKQFSMFLGKFSWFAGEKLTFVDFLT 163
Query: 51 VCPVDEYTPQLLHIIGPFPNIRKFVARFLHLLEKI 85
+D+ + FPN++ F+ RF LEKI
Sbjct: 164 YDILDQNRIFDPKCLDEFPNLKAFMCRFEA-LEKI 197
>3jx8_A Putative lipoprotein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 2.16A {Parabacteroides distasonis atcc
8503}
Length = 250
Score = 25.5 bits (55), Expect = 8.5
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 111 LVISSQGEI-VDALHSVDGSLKGSSDVEEYNGAYYFGSP 148
I+S GEI V A +D ++ GS ++ +Y G P
Sbjct: 202 CNIASSGEISVYATQILDANIVGSGEI------HYKGDP 234
>2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH;
1.59A {Fasciola hepatica} PDB: 2wdu_A*
Length = 211
Score = 25.4 bits (56), Expect = 8.9
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 64 IIGPFPNIRKFVARFLHLLEKI 85
+ FP + +F ++
Sbjct: 178 LEQKFPKLHEFHKSLPTSCSRL 199
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn
dependent nucleotide phosphatase, metalloprotease,
hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus
abyssi} PDB: 2ivo_A 2ivp_A*
Length = 330
Score = 25.6 bits (57), Expect = 9.4
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 75 VARFLHLLEKIPSEDVKHVVGHFESILFLQGTRYTLLVIS 114
AR L + + P V H + H E L +S
Sbjct: 90 AARALAVKYRKPIVGVNHCIAHVEITKMFGVKDPVGLYVS 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.142 0.431
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,533,978
Number of extensions: 145913
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 26
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)