BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4774
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 2 FDGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQI 61
FDG Y P G+ D GA++VAD V + G Q + T ++
Sbjct: 104 FDGLNY------PEGLAVDTQGAVYVADRGNNRV-VKLAAGSKTQTVLPFTGLND----- 151
Query: 62 PNSVTVDSDGMVYWSDS 78
P+ V VD+ G VY +D+
Sbjct: 152 PDGVAVDNSGNVYVTDT 168
>pdb|1I9E|A Chain A, Tcr Domain
Length = 115
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 73 VYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQ 107
V+WSDS+ + G LT GSG+ + + P Q
Sbjct: 80 VHWSDSAVYFCAVSGFASALTFGSGTKVIVLPYIQ 114
>pdb|1TCR|A Chain A, Murine T-Cell Antigen Receptor 2c Clone
pdb|2CKB|A Chain A, Structure Of The 2cKBDEV8 COMPLEX
pdb|2CKB|C Chain C, Structure Of The 2cKBDEV8 COMPLEX
pdb|1G6R|A Chain A, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1G6R|C Chain C, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1MWA|A Chain A, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
pdb|1MWA|C Chain C, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
Length = 202
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 73 VYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQ 107
V+WSDS+ + G LT GSG+ + + P Q
Sbjct: 80 VHWSDSAVYFCAVSGFASALTFGSGTKVIVLPYIQ 114
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 41 TGQTEQLISMDTEI--DGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDG 87
T QT++L++ D + G +P PNS TV + W + + DG
Sbjct: 6 TKQTDELLAKDEQYVWHGXRPFSPNSTTVGAKAEGCWVEDIQGKRYLDG 54
>pdb|2CBQ|A Chain A, Crystal Structure Of The Neocarzinostatin 1tes15 Mutant
Bound To Testosterone Hemisuccinate.
pdb|2CBQ|B Chain B, Crystal Structure Of The Neocarzinostatin 1tes15 Mutant
Bound To Testosterone Hemisuccinate.
pdb|2CBQ|C Chain C, Crystal Structure Of The Neocarzinostatin 1tes15 Mutant
Bound To Testosterone Hemisuccinate.
pdb|2CBQ|D Chain D, Crystal Structure Of The Neocarzinostatin 1tes15 Mutant
Bound To Testosterone Hemisuccinate.
pdb|2CBQ|E Chain E, Crystal Structure Of The Neocarzinostatin 1tes15 Mutant
Bound To Testosterone Hemisuccinate.
pdb|2CBQ|F Chain F, Crystal Structure Of The Neocarzinostatin 1tes15 Mutant
Bound To Testosterone Hemisuccinate
Length = 114
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 46 QLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDG-LFDG 91
Q ++DT + + P +SVT D++G S S T + ++G LFDG
Sbjct: 36 QRAAVDTGVHASNPADLSSVTADANGSA--STSLTVRRSFEGFLFDG 80
>pdb|3EUW|A Chain A, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|B Chain B, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|C Chain C, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|D Chain D, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
Length = 344
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 53 EIDGAKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKI 102
++D A+ +PN V V + G +S ++ YD + L G I I
Sbjct: 178 DLDXARFFVPNIVEVTATGANVFSQEIAEFNDYDQVIVTLRGSKGELINI 227
>pdb|1QJQ|A Chain A, Ferric Hydroxamate Receptor From Escherichia Coli (fhua)
pdb|1QKC|A Chain A, Escherichia Coli Ferric Hydroxamate Uptake Receptor (Fhua)
In Complex Delta Two-Albomycin
pdb|1QFG|A Chain A, E. Coli Ferric Hydroxamate Receptor (Fhua)
pdb|2GRX|A Chain A, Crystal Structure Of Tonb In Complex With Fhua, E. Coli
Outer Membrane Receptor For Ferrichrome
pdb|2GRX|B Chain B, Crystal Structure Of Tonb In Complex With Fhua, E. Coli
Outer Membrane Receptor For Ferrichrome
Length = 725
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 17/86 (19%)
Query: 13 RPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKP-QIPNSVTVDSDG 71
R G++ + AL + G Y T+ + DT G P Q+P +
Sbjct: 577 RARGVEIEAKAALSASVNVVGSYTY------TDAEYTTDTTYKGNTPAQVPKHMAS---- 626
Query: 72 MVYWSDSSTKYKLYDGLFDGLTSGSG 97
W+D Y +DG GLT G+G
Sbjct: 627 --LWAD----YTFFDGPLSGLTLGTG 646
>pdb|2FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (fhua) From E.coli
Length = 723
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 17/86 (19%)
Query: 13 RPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKP-QIPNSVTVDSDG 71
R G++ + AL + G Y T+ + DT G P Q+P +
Sbjct: 575 RARGVEIEAKAALSASVNVVGSYTY------TDAEYTTDTTYKGNTPAQVPKHMAS---- 624
Query: 72 MVYWSDSSTKYKLYDGLFDGLTSGSG 97
W+D Y +DG GLT G+G
Sbjct: 625 --LWAD----YTFFDGPLSGLTLGTG 644
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,868,157
Number of Sequences: 62578
Number of extensions: 154726
Number of successful extensions: 295
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 12
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)