RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4774
(120 letters)
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 85.5 bits (211), Expect = 2e-21
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 5 FKYEQQCGRPLGMKFD-KNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPN 63
+ CGR + ++ +N L++ D Y+ L V G QL T +DG +
Sbjct: 73 AEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLA---TSVDGVPFKWLY 129
Query: 64 SVTVD-SDGMVYWSDSSTKYKLYDGLFDGLT-SGSGSFIKIGPNTQEV 109
+VTVD G+VY++D ST Y T +G IK P+T+E
Sbjct: 130 AVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 47.8 bits (114), Expect = 9e-08
Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 5/107 (4%)
Query: 2 FDGFKYEQQCGRPLGMKFDKNGA-LHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQ 60
+ G P G + D++ L VAD GL V E + +G + Q
Sbjct: 61 ICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIA---KKDSEGRRMQ 117
Query: 61 IPNSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFIKIGPNTQ 107
N D +G ++ + + + + GS + Q
Sbjct: 118 GCNDCAFDYEGNLWITAPAGEVA-PADYTRSMQEKFGSIYCFTTDGQ 163
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 40.8 bits (96), Expect = 3e-05
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 10 QCGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD 68
Q P G+ G + + + +N+ TE + T +T+
Sbjct: 13 QDTGPYGITVSDKGKVWITQHKANMISCINLDGKITE--YPLPTPDAK-----VMCLTIS 65
Query: 69 SDGMVYWSDSS 79
SDG V++++++
Sbjct: 66 SDGEVWFTENA 76
Score = 40.4 bits (95), Expect = 4e-05
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 70
P + + AL + + ++ + TE + T G P +T +D
Sbjct: 141 SYPSFITLGSDNALWFTENQNNAIGRITESGDITE--FKIPTPASG-----PVGITKGND 193
Query: 71 GMVYWSDSST 80
+++ +
Sbjct: 194 DALWFVEIIG 203
Score = 38.8 bits (91), Expect = 1e-04
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 10 QCGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD 68
P G+ NG + + + ++ E + K P+ +T+
Sbjct: 97 PDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELP-------NKGSYPSFITLG 149
Query: 69 SDGMVYWSDSST 80
SD ++++++
Sbjct: 150 SDNALWFTENQN 161
Score = 38.5 bits (90), Expect = 2e-04
Identities = 9/70 (12%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 70
P+G+ + AL + + ++ + TE + T P+++T +
Sbjct: 183 SGPVGITKGNDDALWFVEIIGNKIGRITTSGEITE--FKIPTPNAR-----PHAITAGAG 235
Query: 71 GMVYWSDSST 80
+++++
Sbjct: 236 IDLWFTEWGA 245
Score = 27.7 bits (62), Expect = 0.88
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 62 PNSVTVDSDGMVYWSDSST 80
P +TV G V+ +
Sbjct: 17 PYGITVSDKGKVWITQHKA 35
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 40.8 bits (96), Expect = 3e-05
Identities = 7/71 (9%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 10 QCGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD 68
P G+ ++G + + ++ + E + + V
Sbjct: 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEV-------PTPDAKVMCLIVS 70
Query: 69 SDGMVYWSDSS 79
S G ++++++
Sbjct: 71 SLGDIWFTENG 81
Score = 38.4 bits (90), Expect = 2e-04
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 70
P + + AL + + ++ TG+ E + T P +T +D
Sbjct: 146 SYPAFITLGSDNALWFTENQNNSIGRIT-NTGKLE-EYPLPTNAAA-----PVGITSGND 198
Query: 71 GMVYWSDSST 80
G +++ +
Sbjct: 199 GALWFVEIMG 208
Score = 38.4 bits (90), Expect = 2e-04
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 70
P G+ NG + + K+ E + + P +T+ SD
Sbjct: 104 SGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYE--YDLPNKGSY-----PAFITLGSD 156
Query: 71 GMVYWSDSST 80
++++++
Sbjct: 157 NALWFTENQN 166
Score = 38.1 bits (89), Expect = 2e-04
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 70
RP + KN + + + ++ E + TE P+ +T D
Sbjct: 230 ARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQE--YQLQTENAE-----PHGITFGKD 282
Query: 71 GMVYWSDSSTKYKL 84
G V+++ KL
Sbjct: 283 GSVWFALKCKIGKL 296
Score = 28.0 bits (63), Expect = 0.69
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 62 PNSVTVDSDGMVYWSDSST 80
P +T DG V+++
Sbjct: 22 PYGITSSEDGKVWFTQHKA 40
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 39.6 bits (92), Expect = 8e-05
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 70
G+ G+ F NG L + V++ + + A N +T SD
Sbjct: 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT--VETLLTLPDAIF--LNGITPLSD 127
Query: 71 GMVYWSDSST 80
+DS
Sbjct: 128 TQYLTADSYR 137
Score = 24.9 bits (54), Expect = 8.7
Identities = 2/16 (12%), Positives = 8/16 (50%)
Query: 62 PNSVTVDSDGMVYWSD 77
++ DG ++ ++
Sbjct: 34 LENLASAPDGTIFVTN 49
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 36.8 bits (86), Expect = 7e-04
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 10 QCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 69
+P G+ D G ++V D + + + T + P + VD+
Sbjct: 65 GLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-------TVLPFDGLNYPEGLAVDT 117
Query: 70 DGMVYWSDSS 79
G VY +D
Sbjct: 118 QGAVYVADRG 127
Score = 33.8 bits (78), Expect = 0.008
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 2 FDGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQI 61
FDG Y P G+ D GA++VAD G +V ++ T +
Sbjct: 104 FDGLNY------PEGLAVDTQGAVYVAD--RGNNRVVKLAAGSKTQ----TVLPFTGLND 151
Query: 62 PNSVTVDSDGMVYWSDSS 79
P+ V VD+ G VY +D+
Sbjct: 152 PDGVAVDNSGNVYVTDTD 169
Score = 31.1 bits (71), Expect = 0.056
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 13 RPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG 71
P G+ D +G ++V D + K+ + + P + VD G
Sbjct: 151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-------VVLPFTDITAPWGIAVDEAG 203
Query: 72 MVYWSDSS 79
VY ++ +
Sbjct: 204 TVYVTEHN 211
Score = 31.1 bits (71), Expect = 0.061
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 12 GRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD 70
P G+ D+ G ++V + + K+ + + T + P +V VDSD
Sbjct: 192 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-------TVLPFTGLNTPLAVAVDSD 244
Query: 71 GMVYWSDS 78
VY +D
Sbjct: 245 RTVYVADR 252
Score = 30.3 bits (69), Expect = 0.11
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 13 RPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM 72
P G+ D G ++V V + TG T + + P + VD G
Sbjct: 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQ-----PQGLAVDGAGT 79
Query: 73 VYWSDSS 79
VY +D +
Sbjct: 80 VYVTDFN 86
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 36.5 bits (84), Expect = 0.001
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 3 DGFKYEQQCGRPLGMKFDKNGALHVADAYFG--LYKVN-----VTT--GQTEQLISMDTE 53
DG + E +P GM D++G ++ D + G L K++ V+T GQ + +D
Sbjct: 314 DGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGT 373
Query: 54 IDGAKPQIPNSVTVDSDGMVYWSDS 78
A P + D +G + +++
Sbjct: 374 PLEATFNYPYDICYDGEGGYWIAEA 398
Score = 34.9 bits (80), Expect = 0.003
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 14 PLGMKFDKNGALHVADAYFG-LYKVN----VTT--GQTEQLISMDTEIDGAKPQIPNSVT 66
P + + + +++D +YK+ G Q D + A PN +T
Sbjct: 270 PYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMT 329
Query: 67 VDSDGMVYWSDS 78
VD DG Y D
Sbjct: 330 VDEDGNFYIVDG 341
Score = 31.5 bits (71), Expect = 0.052
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Query: 2 FDGFKYEQQCGRPLGMKFD-KNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQ 60
G G+ + D L+ D+ + NV T + + ++
Sbjct: 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNP 268
Query: 61 IPNSVTVDSDGMVYWSDSS 79
P + D Y SD +
Sbjct: 269 GPYLIYYFVDSNFYMSDQN 287
Score = 26.1 bits (57), Expect = 3.5
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 10 QCGRPLGMKFDKNGALHVADAYFGLYKV-NVTT--GQTEQLISMDTEIDGAKPQIPNSVT 66
Q +K +G D F + NV+T G + + D ++ AK + +
Sbjct: 78 QLPGGNRIKVIVDGKEVTTDGTFKYEQAQNVSTISGSASKDGNDDGDLASAKFKYMWGIA 137
Query: 67 VDSDGMVYWSDSS 79
+ V
Sbjct: 138 AVGNNTVLAYQRD 150
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 31.3 bits (71), Expect = 0.054
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 10 QCGRPLGMKFDKNGALHVADAYFGL-YKVNVTTGQTEQLISMDTEIDGAKP-QIPNSVTV 67
G F NG + D + +N ++G+ +D K +P+ +
Sbjct: 245 AISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI-----IDVFKPVRKHFDMPHDIVA 299
Query: 68 DSDGMVY 74
DG VY
Sbjct: 300 SEDGTVY 306
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 31.3 bits (70), Expect = 0.066
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 9 QQCGRPLGMKFD-KNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVT 66
+ +D + L+ D+ + K Q ++ + Q P ++
Sbjct: 337 HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQ-PYDLS 395
Query: 67 VDSD-GMVYWSDSSTK 81
+D +YW+ +T
Sbjct: 396 IDIYSRYIYWTCEATN 411
Score = 28.6 bits (63), Expect = 0.50
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 12 GRPLGMKFD-KNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 69
+ FD + ++ D + + + E ++ + P + VD
Sbjct: 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDY-------PEGMAVDW 89
Query: 70 -DGMVYWSDSSTK 81
+YW+D+ T
Sbjct: 90 LGKNLYWADTGTN 102
Score = 25.9 bits (56), Expect = 3.7
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 39 VTTGQTEQLISMDTE-----IDGAKPQIPNSVTVD-SDGMVYWSDSSTK 81
+ + IS++T I + +++ D +D +YW+D S K
Sbjct: 11 FSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLK 59
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 30.9 bits (69), Expect = 0.086
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 49 SMD----TEIDGAKPQIPNSVTVD-SDGMVYWSDSSTKY 82
++ + Q PN +T+D G +YW DS
Sbjct: 525 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 563
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 30.2 bits (69), Expect = 0.12
Identities = 12/66 (18%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 13 RPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGM 72
P+G+ + NG + +AD + + + + T + + ++++++ A+ V + DG
Sbjct: 208 YPIGVGINSNGEILIADNHNN-FNLTIFTQDGQLISALESKVKHAQCF---DVALMDDGS 263
Query: 73 VYWSDS 78
V +
Sbjct: 264 VVLASK 269
Score = 26.4 bits (59), Expect = 2.3
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 9 QQCGRPLGMKFDKNGALHVADAYFGLYKVNV--TTGQTEQLISMDTEIDGAKPQIPNSVT 66
P G+ D G + V + + +V + G ++ PN V
Sbjct: 118 TILQHPRGVTVDNKGRIIVVE--CKVMRVIIFDQNGNVLHKFGCSKHLEF-----PNGVV 170
Query: 67 VDSDGMVYWSDSS 79
V+ ++ SD+
Sbjct: 171 VNDKQEIFISDNR 183
Score = 26.0 bits (58), Expect = 3.7
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 5 FKYEQQCGRPLGMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPN 63
F + P G+ + + ++D + N GQ + I + + P
Sbjct: 157 FGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFN-YEGQYLRQIGGEGITNY-----PI 210
Query: 64 SVTVDSDGMVYWSDS 78
V ++S+G + +D+
Sbjct: 211 GVGINSNGEILIADN 225
Score = 25.6 bits (57), Expect = 5.2
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 10 QCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 69
Q P + +N + +++ + + + + Q P VTVD+
Sbjct: 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFV----RKFGATILQHPRGVTVDN 130
Query: 70 DGMVYWSDS 78
G + +
Sbjct: 131 KGRIIVVEC 139
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 29.8 bits (66), Expect = 0.21
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 10/83 (12%)
Query: 12 GRPLGMKFD-KNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD- 68
P G+ D L+ D + + + LIS D E P ++ +D
Sbjct: 392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEE-------PRAIVLDP 444
Query: 69 SDGMVYWSDSSTKYKLYDGLFDG 91
G +YW+D K+ DG
Sbjct: 445 MVGYMYWTDWGEIPKIERAALDG 467
Score = 25.9 bits (56), Expect = 3.9
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 3 DGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMD-TEIDGAKPQI 61
Y+ C P G+K +NG A L T + L + D T+I I
Sbjct: 291 VKPFYQCAC--PTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDI 348
Query: 62 PNSVTVD---SDGMVYWSDSSTK 81
+++ +D +G +YW+D +
Sbjct: 349 RHAIAIDYDPVEGYIYWTDDEVR 371
Score = 25.6 bits (55), Expect = 5.1
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 34 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD---GMVYWSDSSTKY 82
L V+ T G+ I + + ++ VD G++YWSD S +
Sbjct: 20 LRLVDATNGKENATIVV--------GGLEDAAAVDFVFSHGLIYWSDVSEEA 63
Score = 25.6 bits (55), Expect = 5.6
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 62 PNSVTVDS-DGMVYWSDSSTK 81
P+ + D +YW+DS T
Sbjct: 86 PDGLACDWLGEKLYWTDSETN 106
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 29.3 bits (65), Expect = 0.24
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 12 GRPLGMKFDKNGA-LHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 69
P G+ D L+ ADA ++K N+ + ++ P ++T+
Sbjct: 166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSL-------PHPFALTLFE 218
Query: 70 DGMVYWSDSSTK 81
D ++YW+D ST
Sbjct: 219 D-ILYWTDWSTH 229
Score = 26.6 bits (58), Expect = 2.0
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 11/51 (21%)
Query: 34 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD---GMVYWSDSSTK 81
L V+ T G+ I + + ++ VD G++YWSD S +
Sbjct: 15 LRLVDATNGKENATIVV--------GGLEDAAAVDFVFSHGLIYWSDVSEE 57
Score = 25.8 bits (56), Expect = 4.7
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 62 PNSVTVDSD-GMVYWSDSSTK 81
P+ + D +YW+DS T
Sbjct: 81 PDGLACDWLGEKLYWTDSETN 101
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 29.0 bits (65), Expect = 0.29
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 12 GRPLGMKFD-KNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 69
G P G+ FD + L DA +N +++ Q P +VT
Sbjct: 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE--------GLQYPFAVTSYG 218
Query: 70 DGMVYWSDSSTK 81
+Y++D T
Sbjct: 219 K-NLYYTDWKTN 229
Score = 27.1 bits (60), Expect = 1.5
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 12 GRPLGMKFD-KNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 69
+G+ FD + ++ D + + ++ G+ +I D P + +D
Sbjct: 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS-------PEGIALDH 88
Query: 70 D-GMVYWSDSSTK 81
++W+DS
Sbjct: 89 LGRTIFWTDSQLD 101
Score = 26.7 bits (59), Expect = 1.7
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 34 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS-DGMVYWSDSSTK 81
+ ++ + ++ + AK + + D D +VYW+D S
Sbjct: 12 IERLPLERNTMKKTEAKAFLHIPAK--VIIGLAFDCVDKVVYWTDISEP 58
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 29.0 bits (64), Expect = 0.31
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 62 PNSVTVD-SDGMVYWSDSSTKY 82
PN +T+D + +YW D+
Sbjct: 248 PNGLTIDYAGRRMYWVDAKHHV 269
Score = 27.0 bits (59), Expect = 1.7
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 62 PNSVTVD-SDGMVYWSDSSTKYKLYDGLFDG 91
P ++ + +G +YW+D ++ DG
Sbjct: 204 PRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid
(ONE-component...; beta-propeller, beta-sandwich; 3.30A
{Bacteroides thetaiotaomicron}
Length = 781
Score = 29.2 bits (66), Expect = 0.31
Identities = 6/58 (10%), Positives = 21/58 (36%)
Query: 17 MKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVY 74
++G L++ GL +++ + + + + D++G ++
Sbjct: 168 ATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIW 225
Score = 26.5 bits (59), Expect = 2.9
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 33 GLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVY 74
GL N T + I GA S+ D ++
Sbjct: 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW 272
Score = 25.0 bits (55), Expect = 7.7
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 19 FDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDS 78
L V Y G+ +++ TG+ + + + + T DG +Y
Sbjct: 124 VQAGKGLWVCTYYRGIEYLDIATGKFTHYNK--STVPALPSEQTWTATEAEDGKLYIGHV 181
Query: 79 STKYKLYD 86
+
Sbjct: 182 EGGLSILS 189
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21,
WBP4, metal- binding, mRNA processing, mRNA splicing,
nucleus, polymorphism; NMR {Homo sapiens}
Length = 75
Score = 27.7 bits (61), Expect = 0.41
Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 35 YKVNVTTGQT--EQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTK 81
Y ++ +G + E+ ++ + + DG Y+ ++ T
Sbjct: 18 YYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETG 66
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis,
lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB:
3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A
2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A*
3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Length = 624
Score = 28.2 bits (62), Expect = 0.64
Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 3/90 (3%)
Query: 2 FDGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQI 61
G+K E MKFD G L + G + V T ++ T I
Sbjct: 302 LPGWKVECVGDDIAWMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNT---I 358
Query: 62 PNSVTVDSDGMVYWSDSSTKYKLYDGLFDG 91
+V SDG VYW +
Sbjct: 359 FTNVAETSDGGVYWEGIDEPLAPGVTITSW 388
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 28.2 bits (62), Expect = 0.70
Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 2 FDGFKYEQQCGRPLGMKF----DKNGALHVADAYFGLYKVNVTTGQTEQL-ISMDTEIDG 56
G + P G+ D L V + V V Q E+ + I
Sbjct: 102 IIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 161
Query: 57 AKPQIPNSVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFI 100
N + Y ++ Y ++ + SF+
Sbjct: 162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 205
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer,
lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB:
2fah_A* 2qzy_A*
Length = 608
Score = 27.8 bits (61), Expect = 0.84
Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 7/100 (7%)
Query: 2 FDGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQI 61
G++ MKFD G L + G + V T +M T A+ I
Sbjct: 286 LPGWRIHCVGDDIAWMKFDDEGRLRAINPERGFFGVAPGTSSRTNPNAMAT---IARNTI 342
Query: 62 PNSVTVDSDGMVYW----SDSSTKYKLYDGLFDGLTSGSG 97
+V + SDG VYW + L G
Sbjct: 343 FTNVGLRSDGGVYWDGLDEPTEPGVTYTSWLGKPWKHGDP 382
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 27.5 bits (60), Expect = 1.1
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 10 QCGRPLGMKFD-KNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTV 67
P G+ D + ++ D+ G + + + + L + P ++ V
Sbjct: 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG-------SKPRAIVV 209
Query: 68 D-SDGMVYWSDSSTKYKLYDGLFDG 91
D G +YW+D T K+ G +G
Sbjct: 210 DPVHGFMYWTDWGTPAKIKKGGLNG 234
Score = 27.5 bits (60), Expect = 1.3
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 12 GRPLGMKFD-KNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 69
P G+ D +G L+ D+ + ++V G + ++ + + P S+ V
Sbjct: 246 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL-----AHPFSLAVFE 300
Query: 70 DGMVYWSDSSTK 81
D V+W+D +
Sbjct: 301 D-KVFWTDIINE 311
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 27.5 bits (60), Expect = 1.1
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 12 GRPLGMKFD-KNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDS 69
P G+ D + L+ D+ + N+ + L+ E P ++ +
Sbjct: 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEK-------PRAIALHP 168
Query: 70 -DGMVYWSDSSTKYKLYDGLFDG 91
+G +YW+D ++ DG
Sbjct: 169 MEGTIYWTDWGNTPRIEASSMDG 191
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 27.3 bits (60), Expect = 1.3
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 12 GRPLGMKFD-KNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVD- 68
P G+ D + ++ D+ G + + + + L + P ++ VD
Sbjct: 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK-------PRAIVVDP 129
Query: 69 SDGMVYWSDSSTKYKLY 85
G +YW+D T K+
Sbjct: 130 VHGFMYWTDWGTPAKIK 146
Score = 26.2 bits (57), Expect = 3.3
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 39 VTTGQTEQLISMDT-EIDGAKPQIPNSVTVDSD---GMVYWSDSSTK 81
T + +++D E P + N V +D++ +YWSD S +
Sbjct: 6 FTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR 52
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 26.9 bits (60), Expect = 1.6
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 20/103 (19%)
Query: 17 MKFDKNGALHVADAYFGL-YKVNVTTGQTEQ-------------LISMDTEIDGAKPQIP 62
+ +G+L +D +G+ G+ E L + + P
Sbjct: 120 VCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRV-----KP 174
Query: 63 NSVTVDSDGMVYWSDSSTKY-KLYDGLFDGLTSGSGSFIKIGP 104
N + G + SD+ Y G T G + P
Sbjct: 175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEP 217
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP;
transcription, beta-propeller; HET: PGE PG4 MES 2PE;
2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Length = 795
Score = 26.1 bits (58), Expect = 3.6
Identities = 9/58 (15%), Positives = 21/58 (36%)
Query: 17 MKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVY 74
+ + VA GL+ +N T + + + + S+ +DS ++
Sbjct: 220 ILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW 277
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus
pyogenes} PDB: 3eif_A*
Length = 926
Score = 25.8 bits (56), Expect = 4.9
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 20 DKNGALHVADAYFGLYK-----VNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDG 71
DK+G + VA+ G Y +++G EQ D +D P++ S T ++
Sbjct: 787 DKDGKV-VAN---GTYTYRVRYTPISSGAKEQHTDFDVIVDNTTPEVATSATFSTED 839
>3ega_A Pellino-2, protein pellino homolog 2; FHA domain, E3 ubiquitin
ligase, substrate binding phosphoprotein, protein
binding; 1.80A {Homo sapiens} PDB: 3egb_A
Length = 263
Score = 25.4 bits (55), Expect = 5.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 68 DSDGMVYWSDSSTKYKLYDGLFDGLT 93
DS ++ + + K+K DG DGLT
Sbjct: 149 DSSKNIFLGEKAAKWKNPDGHMDGLT 174
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 25.5 bits (55), Expect = 5.9
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 17/82 (20%)
Query: 26 HVADAYFGLYKVNVTTGQT------EQLISMDTEIDGAKPQIPNSVTVD----------S 69
A+ F + + Q +++ TE++G PQIP +V S
Sbjct: 136 RQAEVTFLGHPGKLVLKQQFSGIDEHGHLTISTELEGRVPQIPYGASVHIEPYTELYHYS 195
Query: 70 DGMVYWSDSSTKYKLYDGLFDG 91
++ S S+ +Y + + DG
Sbjct: 196 SSVIT-SSSTREYTVMEPDQDG 216
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 25.2 bits (56), Expect = 5.9
Identities = 5/52 (9%), Positives = 11/52 (21%), Gaps = 9/52 (17%)
Query: 65 VTVDSDGMVYWSDSSTKYKLYDG---LFDG----LTSGSGSFIKIGPNTQEV 109
+ +D + D + + + G P V
Sbjct: 72 IPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLTFYKGYVKI--KDPTHVIV 121
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann
domain, PLP, cobalamin, 5'-deoxyad radical,
adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium
sticklandii} SCOP: c.1.19.4
Length = 516
Score = 25.6 bits (56), Expect = 5.9
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 26 HVADAYFGLYKVNVTTGQTEQLISMDTE 53
H+ DA F + V + T Q L+ M TE
Sbjct: 386 HIQDALFNM--VTIMTNQRIHLLGMLTE 411
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 24.4 bits (53), Expect = 9.8
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 48 ISMDTEIDGAKPQIPNSVTVDSDGMVYW 75
++ I + P V+S G V +
Sbjct: 88 LAAYNAISKPEVLTPQLALVNSSGHVQY 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.135 0.394
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,772,115
Number of extensions: 93980
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 90
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)