RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4774
(120 letters)
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 279
Score = 32.7 bits (73), Expect = 0.007
Identities = 14/85 (16%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 1 MFDGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQ 60
E P+G+ + NG + +AD + + + + T + + ++++++ A+
Sbjct: 189 YLRQIGGEGITNYPIGVGINSNGEILIADNH-NNFNLTIFTQDGQLISALESKVKHAQCF 247
Query: 61 IPNSVTVDSDGMVYWSDSSTKYKLY 85
V + DG V + + +Y
Sbjct: 248 ---DVALMDDGSVVLASKDYRLYIY 269
Score = 27.3 bits (59), Expect = 0.42
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 62 PNSVTVDSDGMVYWSDSSTK 81
P+ V V++ + +D++
Sbjct: 25 PSGVAVNAQNDIIVADTNNH 44
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 32.4 bits (72), Expect = 0.008
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 16 GMKFDKNGALHVADAYFG-LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVY 74
G+ FD+ G L + D + G ++K+N T + ++ P ++ + DG ++
Sbjct: 44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF---VSHKAN----PAAIKIHKDGRLF 96
Query: 75 WSD 77
Sbjct: 97 VCY 99
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 260
Score = 31.4 bits (69), Expect = 0.019
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 2 FDGFKYEQQCGRPLGMKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQI 61
F G + P G+ D G ++V V + TG T + +
Sbjct: 7 FTGIDFRLS---PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQ----- 58
Query: 62 PNSVTVDSDGMVYW 75
P + VD G VY
Sbjct: 59 PQGLAVDGAGTVYV 72
Score = 30.6 bits (67), Expect = 0.039
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 62 PNSVTVDSDGMVYWSDS 78
P +V VDSD VY +D
Sbjct: 226 PLAVAVDSDRTVYVADR 242
Score = 27.9 bits (60), Expect = 0.32
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 62 PNSVTVDSDGMVYWSDSST 80
P+ V VDS G VY +
Sbjct: 16 PSGVAVDSAGNVYVTSEGM 34
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 363
Score = 30.6 bits (69), Expect = 0.032
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 17 MKFDKNGALHVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYW 75
MKFD G L + G + V T ++ T K I +V SDG VYW
Sbjct: 56 MKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKT---IQKNTIFTNVAETSDGGVYW 111
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 26.8 bits (58), Expect = 0.67
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 39 VTTGQTEQLISMDT-EIDGAKPQIPNSVTVDSD---GMVYWSDSSTKYKLYDGLFDGLTS 94
T + +++D E P + N V +D++ +YWSD S + + D
Sbjct: 6 FTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR-MICSTQLDRAHG 64
Query: 95 GSGSFIKIGPNTQEV 109
S I + Q
Sbjct: 65 VSSYDTVISRDIQAP 79
Score = 24.1 bits (51), Expect = 4.9
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 34 LYKVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSDGMVYWSDSSTK 81
+ ++V G + ++ + + P S+ V + V+W+D +
Sbjct: 188 ISSIDVNGGNRKTILEDEKRL-----AHPFSLAVF-EDKVFWTDIINE 229
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
{Clostridium sticklandii [TaxId: 1511]}
Length = 516
Score = 26.3 bits (58), Expect = 1.2
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 26 HVADAYFGLYKVNVTTGQTEQLISMDTE 53
H+ DA F + V + T Q L+ M TE
Sbjct: 386 HIQDALFNM--VTIMTNQRIHLLGMLTE 411
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 340
Score = 25.1 bits (54), Expect = 2.6
Identities = 10/97 (10%), Positives = 27/97 (27%), Gaps = 13/97 (13%)
Query: 13 RPLGMKF--DKNGAL-------HVADAYFGLYKVNVTTGQTEQLISMDTEIDGAKPQIPN 63
P G+ D + + + + ++K L ++ + N
Sbjct: 98 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK----LLPSVN 153
Query: 64 SVTVDSDGMVYWSDSSTKYKLYDGLFDGLTSGSGSFI 100
+ Y ++ Y ++ + SF+
Sbjct: 154 DIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 190
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Length = 263
Score = 24.8 bits (53), Expect = 3.0
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 62 PNSVTVDSDGMVYWSDSSTK 81
P +VT +Y++D T
Sbjct: 211 PFAVTSY-GKNLYYTDWKTN 229
Score = 23.7 bits (50), Expect = 8.1
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 36 KVNVTTGQTEQLISMDTEIDGAKPQIPNSVTVDSD---GMVYWSDSSTK 81
++ + ++ + AK + + D +VYW+D S
Sbjct: 14 RLPLERNTMKKTEAKAFLHIPAK----VIIGLAFDCVDKVVYWTDISEP 58
>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf
complex {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 127
Score = 24.2 bits (52), Expect = 3.3
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 10 QCGRPLGMKFDKNGALHVADAYFGL--YKVNVTTGQTEQLISMDTEID---GAKP 59
C G +++ G + A L +V G+ + TE D G P
Sbjct: 72 ICPC-HGSQYNNQGRVVRGPAPLSLALAHCDVDDGKV--VFVPWTETDFRTGEAP 123
>d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima
[TaxId: 2336]}
Length = 172
Score = 24.3 bits (53), Expect = 3.8
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 78 SSTKYKLYDG---LFDGLTSGSGSFIKIGPNTQE 108
+STK +++ + S S + +
Sbjct: 12 TSTKLSIFEDERMVKMQNFSHSPDELGRFQKILD 45
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 24.6 bits (52), Expect = 3.9
Identities = 2/22 (9%), Positives = 8/22 (36%)
Query: 59 PQIPNSVTVDSDGMVYWSDSST 80
++ DG ++ ++
Sbjct: 27 NTFLENLASAPDGTIFVTNHEV 48
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium
sporotrichioides [TaxId: 5514]}
Length = 354
Score = 24.5 bits (53), Expect = 4.3
Identities = 5/21 (23%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 71 GMVYWSDSSTKYKLYDGLFDG 91
G V W +Y+L + +++
Sbjct: 294 GYVTWHLCDRRYRLSE-IYEK 313
>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella
typhimurium [TaxId: 90371]}
Length = 189
Score = 24.1 bits (52), Expect = 4.7
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 10/35 (28%)
Query: 78 SSTKYKLYD---------GLFDGLTSGSGSFIKIG 103
SS K+ + D G+ DG+ + +F+ I
Sbjct: 12 SSIKFSVLDVATCDVLMAGIADGMNT-ENAFLSIN 45
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 233
Score = 23.6 bits (51), Expect = 7.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 48 ISMDTEIDGAKPQIPNSVTV 67
+++ TE++G PQIP +V
Sbjct: 118 LTISTELEGRVPQIPYGASV 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.135 0.394
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 431,598
Number of extensions: 17764
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 23
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)