Query psy4780
Match_columns 156
No_of_seqs 133 out of 1336
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 17:30:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 99.7 4.1E-16 8.9E-21 140.7 11.8 119 1-131 92-210 (557)
2 KOG1286|consensus 99.5 3.3E-14 7.1E-19 128.9 6.6 115 1-131 95-210 (554)
3 TIGR00908 2A0305 ethanolamine 99.0 1.2E-08 2.6E-13 88.8 13.3 91 1-120 70-160 (442)
4 PRK10655 potE putrescine trans 98.9 2E-08 4.2E-13 87.4 12.5 97 1-122 68-164 (438)
5 TIGR00909 2A0306 amino acid tr 98.9 1.5E-08 3.2E-13 87.6 11.6 109 1-122 66-174 (429)
6 PRK10580 proY putative proline 98.9 3E-08 6.5E-13 87.0 11.6 91 1-120 72-162 (457)
7 PRK10249 phenylalanine transpo 98.8 4.7E-08 1E-12 86.1 11.8 92 1-121 84-175 (458)
8 PRK11021 putative transporter; 98.8 9.5E-08 2.1E-12 82.5 13.5 93 1-120 62-154 (410)
9 PRK10238 aromatic amino acid t 98.8 7.4E-08 1.6E-12 84.8 12.9 90 1-119 75-164 (456)
10 TIGR00930 2a30 K-Cl cotranspor 98.8 4.1E-08 9E-13 94.2 12.0 99 1-118 142-240 (953)
11 PRK10435 cadB lysine/cadaverin 98.8 9.3E-08 2E-12 83.5 12.7 92 1-118 67-158 (435)
12 PRK10197 gamma-aminobutyrate t 98.8 7.9E-08 1.7E-12 84.4 12.3 93 1-122 55-147 (446)
13 PRK11387 S-methylmethionine tr 98.8 9.1E-08 2E-12 84.3 12.7 93 1-122 78-170 (471)
14 PF13520 AA_permease_2: Amino 98.8 1E-07 2.3E-12 81.8 12.3 99 1-122 61-160 (426)
15 PRK10644 arginine:agmatin anti 98.8 1.3E-07 2.8E-12 82.6 12.7 96 1-121 70-165 (445)
16 PRK10746 putative transport pr 98.8 1.3E-07 2.9E-12 83.4 12.6 91 1-120 73-163 (461)
17 TIGR00905 2A0302 transporter, 98.7 1.3E-07 2.8E-12 83.5 12.2 99 1-122 72-170 (473)
18 TIGR00837 araaP aromatic amino 98.7 1.6E-07 3.6E-12 80.1 11.9 97 1-122 58-155 (381)
19 PRK11049 D-alanine/D-serine/gl 98.7 2.2E-07 4.7E-12 82.0 12.9 92 2-122 84-175 (469)
20 TIGR01773 GABAperm gamma-amino 98.7 1.7E-07 3.7E-12 81.9 12.0 89 1-118 75-163 (452)
21 PRK15049 L-asparagine permease 98.7 2.3E-07 5E-12 82.8 12.9 94 1-121 91-184 (499)
22 TIGR03428 ureacarb_perm permea 98.7 1.5E-07 3.4E-12 83.0 11.4 109 1-122 77-185 (475)
23 TIGR03810 arg_ornith_anti argi 98.7 2.8E-07 6E-12 81.2 12.4 98 2-122 67-164 (468)
24 PRK11357 frlA putative fructos 98.6 4.1E-07 8.8E-12 79.4 11.9 95 1-122 73-168 (445)
25 TIGR00913 2A0310 amino acid pe 98.6 5.8E-07 1.2E-11 79.0 12.1 89 2-119 68-156 (478)
26 COG0531 PotE Amino acid transp 98.6 4.5E-07 9.8E-12 78.1 11.0 101 1-122 75-175 (466)
27 PRK10836 lysine transporter; P 98.6 7.8E-07 1.7E-11 78.9 11.6 93 1-122 79-171 (489)
28 TIGR00911 2A0308 L-type amino 98.4 4E-06 8.7E-11 74.4 12.7 98 1-122 107-206 (501)
29 COG1113 AnsP Gamma-aminobutyra 98.4 5.7E-06 1.2E-10 73.8 12.7 96 1-126 76-171 (462)
30 TIGR00907 2A0304 amino acid pe 98.3 5.8E-06 1.3E-10 72.9 11.0 101 1-119 77-181 (482)
31 KOG1287|consensus 98.3 9.1E-06 2E-10 73.0 11.2 103 1-127 77-180 (479)
32 PRK15238 inner membrane transp 98.3 8.2E-06 1.8E-10 72.5 10.8 100 1-116 69-170 (496)
33 PF00324 AA_permease: Amino ac 98.2 1.4E-06 3.1E-11 76.6 3.6 100 1-122 59-158 (478)
34 TIGR03813 put_Glu_GABA_T putat 98.1 3.7E-05 8.1E-10 67.8 11.4 96 1-114 61-156 (474)
35 TIGR00910 2A0307_GadC glutamat 98.0 0.00011 2.4E-09 65.9 11.6 95 1-117 65-159 (507)
36 TIGR00912 2A0309 spore germina 97.8 0.0003 6.4E-09 59.6 11.5 87 3-117 65-151 (359)
37 COG0833 LysP Amino acid transp 97.0 0.0049 1.1E-07 56.3 9.3 94 1-122 108-201 (541)
38 TIGR00814 stp serine transport 96.6 0.039 8.4E-07 48.5 11.7 97 2-122 66-163 (397)
39 PHA02764 hypothetical protein; 96.4 0.002 4.2E-08 56.0 2.1 35 1-35 76-110 (399)
40 KOG1289|consensus 95.2 0.2 4.4E-06 46.1 10.2 100 1-120 113-216 (550)
41 PF03845 Spore_permease: Spore 94.1 0.84 1.8E-05 38.2 10.8 88 5-120 65-152 (320)
42 TIGR00796 livcs branched-chain 93.3 1.4 3E-05 38.8 10.9 105 1-128 53-157 (378)
43 PF03222 Trp_Tyr_perm: Tryptop 93.2 4.3 9.2E-05 35.6 13.9 92 6-122 69-161 (394)
44 TIGR00906 2A0303 cationic amin 92.1 1.8 4E-05 39.5 10.6 70 83-153 106-177 (557)
45 PRK10483 tryptophan permease; 89.9 12 0.00026 33.4 13.3 91 6-122 77-168 (414)
46 PRK15132 tyrosine transporter 88.2 15 0.00032 32.6 12.6 87 6-121 69-160 (403)
47 KOG1286|consensus 84.6 4.3 9.4E-05 37.5 7.5 115 13-153 55-176 (554)
48 PRK13629 threonine/serine tran 84.4 31 0.00068 31.2 13.6 91 7-122 87-179 (443)
49 PRK09664 tryptophan permease T 78.7 47 0.001 29.7 11.7 89 6-120 75-165 (415)
50 KOG2083|consensus 69.9 12 0.00026 35.2 5.9 98 1-124 94-192 (643)
51 COG0814 SdaC Amino acid permea 64.6 1E+02 0.0022 27.2 11.6 97 3-122 73-169 (415)
52 COG2205 KdpD Osmosensitive K+ 41.8 1.9E+02 0.0041 28.6 8.8 61 90-153 428-489 (890)
53 PF05525 Branch_AA_trans: Bran 25.5 5E+02 0.011 23.4 8.8 42 7-58 266-307 (427)
54 KOG1288|consensus 21.7 54 0.0012 31.9 1.6 107 2-122 132-239 (945)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.67 E-value=4.1e-16 Score=140.75 Aligned_cols=119 Identities=39% Similarity=0.679 Sum_probs=95.5
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||+|.|+|+++||.+||++||++++||.+ +.++++++|+.|++++++....++.....+ ...++...+
T Consensus 92 sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~----------~~a~va~~~s~yl~~ll~~~~~~~~~~~~~-~~~~~l~~~ 160 (557)
T TIGR00906 92 AGSAYLYSYVTVGELWAFITGWNLILEYVI----------GTAAVARSWSAYFDELLNKQIGQFRRTYFK-LNYDGLAEY 160 (557)
T ss_pred CCcceeeHHHHhCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhcccccccccc-ccCCccccc
Confidence 699999999999999999999999999999 999999999999999986422211111111 111223456
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccCCC
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGELHED 131 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg~~~~~ 131 (156)
+++++++++++++.+|.+|+|+++|+|.+.+.+|..+..+++ ..|..+.+
T Consensus 161 ~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~i-v~g~~~~~ 210 (557)
T TIGR00906 161 PDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVI-IAGFTKAD 210 (557)
T ss_pred chHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhh-hHHHhhCC
Confidence 789999999999999999999999999999999999887766 66654443
No 2
>KOG1286|consensus
Probab=99.49 E-value=3.3e-14 Score=128.89 Aligned_cols=115 Identities=35% Similarity=0.438 Sum_probs=96.5
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||+|+|+|+.+||.+||.+|||.+|||++ +.|+++|+|+.|++.+.+ ....+.. ..+.+..+.+
T Consensus 95 aGs~~~ya~~~i~e~~aF~~gWny~l~y~i----------~~a~e~~a~s~~~~~w~~--~~~~~~~---~~~~~~~~~~ 159 (554)
T KOG1286|consen 95 AGSFYTYAYRFVGESLAFAIGWNYLLEYVI----------GLAAEARAWSSYLDYWTG--ASLIGIL---VDTVNPGGWI 159 (554)
T ss_pred cccceeeeeeeeCcHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHhc--ccccccc---ccCCCCCccH
Confidence 599999999999999999999999999999 999999999999999971 1111100 0122335678
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHhhccCCC
Q psy4780 81 PDFLAFFVCLGYALLLG-AASVARAWSGYVDSLCGGAISNFTIATVGELHED 131 (156)
Q Consensus 81 ~d~~A~livlilt~l~~-~Gik~sa~vn~i~tli~~~I~~fii~~vg~~~~~ 131 (156)
+|++++++++.++.+.. .++|.+..+|+++++++..+..+++ ..|..+.|
T Consensus 160 ~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi-~~G~~~~d 210 (554)
T KOG1286|consen 160 PDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVI-IAGGGPAD 210 (554)
T ss_pred HHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheee-ecCCCcCC
Confidence 99999999998888888 9999999999999999999999999 77865543
No 3
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.97 E-value=1.2e-08 Score=88.84 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=77.9
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+||.+||++||...+.|.. ..++.+.+++.|++.+++. .+
T Consensus 70 ~Gg~y~~~~~~~G~~~gf~~gw~~~~~~~~----------~~~~~a~~~~~~l~~~~p~----~~--------------- 120 (442)
T TIGR00908 70 AGGGYGFARRAFGPWGGFLAGTAILIEFAF----------APPAIACFIGAYCESLFPV----GP--------------- 120 (442)
T ss_pred CCCHHHHHHHHhCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhcc----Cc---------------
Confidence 699999999999999999999999999999 8899999999999888753 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNF 120 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~f 120 (156)
....+.++..+++.+|.+|+|.+++++.+.++++......
T Consensus 121 ~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~~~l~i 160 (442)
T TIGR00908 121 GWLAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIALGV 160 (442)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1355667777889999999999999999999988765433
No 4
>PRK10655 potE putrescine transporter; Provisional
Probab=98.91 E-value=2e-08 Score=87.39 Aligned_cols=97 Identities=13% Similarity=-0.014 Sum_probs=76.1
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+||.+||++||...+++++ +.++.+.+...|+..+++......+
T Consensus 68 ~GG~y~y~~~~~G~~~gf~~gw~~~~~~~~----------~~~~~a~~~~~y~~~~~~~~~~~~~--------------- 122 (438)
T PRK10655 68 SGGMGGYAEYAFGKSGNFMANYTYGVSLLI----------ANVAIAISAVGYGTELFGATLSPVQ--------------- 122 (438)
T ss_pred CCchHHHHHHHcCcchHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcccccchHH---------------
Confidence 699999999999999999999999999999 7777788888999888753111111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
....+.++..+++.+|.+|+|.++++|.+.+..+......+.
T Consensus 123 ~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l~~~~ 164 (438)
T PRK10655 123 ICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVVGLS 164 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134456666788999999999999999998877765554443
No 5
>TIGR00909 2A0306 amino acid transporter.
Probab=98.91 E-value=1.5e-08 Score=87.56 Aligned_cols=109 Identities=22% Similarity=0.323 Sum_probs=84.5
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+|+.|.|+++.+|+..||++||..++.|.+ ..++.+.+++.|++.+++....+.|..... .+.....
T Consensus 66 ~Gg~y~~~~~~~G~~~g~~~gw~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 132 (429)
T TIGR00909 66 AGSPYTYAYEAMGELTAFIIGWSLWLEYGV----------AVAAVAVGWGGYLQEFLPGVGLDLPAVLTA---KPGNGGV 132 (429)
T ss_pred CCcceeeHHHHhCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHccccCchhhhc---CCccccc
Confidence 589999999999999999999999999999 999999999999999886422222321110 0001122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
....+..+.++++.+|++|.|.++|++.+.+.++......++
T Consensus 133 ~~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~ 174 (429)
T TIGR00909 133 FNLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFA 174 (429)
T ss_pred ccHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 335567788899999999999999999999999988765444
No 6
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.85 E-value=3e-08 Score=86.98 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=75.4
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+||.+||++||+.+++|.+ ..++.+.+++.|++.++++ .|.
T Consensus 72 ~Gg~y~y~~~~~G~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~~-------------- 123 (457)
T PRK10580 72 ASSFSRYAQENLGPLAGYITGWTYCFEILI----------VAIADVTAFGIYMGVWFPT----VPH-------------- 123 (457)
T ss_pred CCCHHHHHHHHcCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhCCC----CCh--------------
Confidence 599999999999999999999999999998 7777788888898776532 221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNF 120 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~f 120 (156)
..++..+.++++.+|.+|+|.+++.+.+.+.+|......
T Consensus 124 -~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~~l~~ 162 (457)
T PRK10580 124 -WIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIII 162 (457)
T ss_pred -HHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHH
Confidence 244556677889999999999999999999988775543
No 7
>PRK10249 phenylalanine transporter; Provisional
Probab=98.82 E-value=4.7e-08 Score=86.06 Aligned_cols=92 Identities=13% Similarity=0.018 Sum_probs=75.1
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+||.+||++||+..+.|.. ..++.+.+.+.|++.++++ .|
T Consensus 84 ~Gg~~~y~~~~~g~~~gf~~gw~~~~~~~~----------~~~~~~~a~~~~~~~~~~~----~~--------------- 134 (458)
T PRK10249 84 SGSFAHFAYKYWGPFAGFLSGWNYWVMFVL----------VGMAELTAAGIYMQYWFPD----VP--------------- 134 (458)
T ss_pred CCCHHHHHHHHhChHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHcCCc----Cc---------------
Confidence 699999999999999999999999999988 7777777788888766532 22
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFT 121 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fi 121 (156)
...++.++..+++.+|++|+|.+++++.+.+++|......+
T Consensus 135 ~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~ 175 (458)
T PRK10249 135 TWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGM 175 (458)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence 13456677788899999999999999999998887544443
No 8
>PRK11021 putative transporter; Provisional
Probab=98.82 E-value=9.5e-08 Score=82.54 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=70.1
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+||.+||++||...+.+.. +.+++....+.|++.+++.. +.+
T Consensus 62 aGG~y~y~~~~~G~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~--------------- 114 (410)
T PRK11021 62 AGGPAHFVGMAFGPRLGRVTGWLFLSVIPV----------GLPAALQIAAGFGQALFGWS--SWQ--------------- 114 (410)
T ss_pred CCCHHHhHHHHhCchhHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHcCCC--Cch---------------
Confidence 699999999999999999999999988777 54444444456777666421 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNF 120 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~f 120 (156)
....+.++.++++.+|.+|+|.++|++.+.+++...+...
T Consensus 115 ~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~ 154 (410)
T PRK11021 115 LLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVA 154 (410)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1345566777889999999999999999998876655443
No 9
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.82 E-value=7.4e-08 Score=84.77 Aligned_cols=90 Identities=13% Similarity=0.047 Sum_probs=76.1
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+||.+||++||+..+.|.. ..++.+.+.+.|++.++++ .|.
T Consensus 75 aGg~y~~~~~~~g~~~gf~~Gw~~~~~~~~----------~~~~~~~~~~~~~~~~~p~----~~~-------------- 126 (456)
T PRK10238 75 AGSFSHFAYKYWGSFAGFASGWNYWVLYVL----------VAMAELTAVGKYIQFWYPE----IPT-------------- 126 (456)
T ss_pred CCCHHHHHHHHcCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCc----CcH--------------
Confidence 699999999999999999999999999999 8888888899998766532 221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISN 119 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~ 119 (156)
+.++.++..+++.+|.+|+|..+++|.+.+.+|.....
T Consensus 127 -~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki~~i~ 164 (456)
T PRK10238 127 -WVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVV 164 (456)
T ss_pred -HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34556666788999999999999999999999986554
No 10
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.81 E-value=4.1e-08 Score=94.17 Aligned_cols=99 Identities=11% Similarity=-0.069 Sum_probs=80.0
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||+|.|.++++|+.+||.+||...+.+.+ ++|..+.+|+.|+..+++....... . .+. ..
T Consensus 142 aGG~Y~yisralGp~~Gf~iG~~~~la~~v----------a~A~~~~Gf~eyl~~lf~~~~~~~~---~----~~~--~~ 202 (953)
T TIGR00930 142 GGGAYYLISRSLGPEFGGSIGLIFAFANAV----------AVAMYVVGFAETVLDLLRENGSKIM---V----DPI--ND 202 (953)
T ss_pred ccHHHHHHHHHhCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhcccccc---c----Ccc--cc
Confidence 699999999999999999999999999999 9999999999999998853111000 0 010 01
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAIS 118 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~ 118 (156)
..+.+.+++++++.+|++|+|.++|++.+.++++....
T Consensus 203 ~~iia~i~l~ll~~In~~Gvk~~ak~q~vl~vi~ll~l 240 (953)
T TIGR00930 203 IRIYGTVTVVVLLGISFAGMEWENKAQVLFLVIVLLSI 240 (953)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 24678888999999999999999999999998865544
No 11
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.80 E-value=9.3e-08 Score=83.51 Aligned_cols=92 Identities=8% Similarity=0.035 Sum_probs=71.7
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++ +||.+||++||.......+ +.++++.++..|+..+++......+
T Consensus 67 ~GG~y~y~~~-~g~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~y~~~~~p~~~~~~~--------------- 120 (435)
T PRK10435 67 QGGPIAYAGE-ISPAFGFQTGVLYYHANWI----------GNLAIGITAVSYLSTFFPVLNDPIP--------------- 120 (435)
T ss_pred CCChhHHHHH-HCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHccccCChHH---------------
Confidence 5999999999 9999999999987776667 7778888899999888753211111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAIS 118 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~ 118 (156)
..+++.+++.+++.+|.+|+|..+++|.+.++++....
T Consensus 121 ~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~li~~ 158 (435)
T PRK10435 121 AGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPV 158 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 12455666778899999999999999998887766443
No 12
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.80 E-value=7.9e-08 Score=84.39 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=74.8
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+||.+||++||+..+.+++ ..++.+.+.+.+++.+.+ +.|
T Consensus 55 ~Gg~y~y~~~~~G~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~--------------- 105 (446)
T PRK10197 55 TGSFSTYADKAIGRWAGYTIGWLYWWFWVL----------VIPLEANIAAMILHSWVP----GIP--------------- 105 (446)
T ss_pred CCCHHHHHHHHcChHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhccc----cCc---------------
Confidence 699999999999999999999999999999 666566555566655432 122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
...++.++..+++.+|.+|+|..+++|.+.+++|.....-++
T Consensus 106 ~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~i 147 (446)
T PRK10197 106 IWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFI 147 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 246778888889999999999999999999999877665544
No 13
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.79 E-value=9.1e-08 Score=84.34 Aligned_cols=93 Identities=15% Similarity=-0.002 Sum_probs=71.6
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+||.+||++||...++|.. ..++.+.+.+.|++.+++ +.|
T Consensus 78 aGG~y~y~~~~~g~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~~~~~~~p----~~~--------------- 128 (471)
T PRK11387 78 TGAFHVYAARYLGPATGYTVAWLYWLTWTV----------ALGSSLTAAGFCMQYWFP----QVP--------------- 128 (471)
T ss_pred CCCHHHHHHHhcChHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhccC----cCc---------------
Confidence 699999999999999999999999999999 655555555556554432 112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
....+.++.++++.+|++|+|..++++.+.+++|......++
T Consensus 129 ~~~~~~~~~~~~~~in~~gvk~~~~~~~~~~~~ki~~l~~~i 170 (471)
T PRK11387 129 VWPWCLLFCALIFGLNVVSTRFFAEGEFWFSLIKVVTILAFI 170 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123445556778899999999999999999998888765444
No 14
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.78 E-value=1e-07 Score=81.83 Aligned_cols=99 Identities=21% Similarity=0.281 Sum_probs=78.2
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+|+.+||++||...++|.. ..++.+....+|+...++......+. .
T Consensus 61 ~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 117 (426)
T PF13520_consen 61 AGGIYVWVSRAFGPFWGFIVGWLYWVAYIL----------SLASVASSFASYLLSLFGPDLNPSPW-------------P 117 (426)
T ss_dssp STTHHHHHHHHH-HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHTTTTTGGGTCSHH-------------H
T ss_pred cCeeeehhhhcccccchhcccceeEEEeec----------cccccccchhhhhhhccccccccccc-------------h
Confidence 699999999999999999999999999999 88888888888987776421111010 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGA-ISNFTI 122 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~-I~~fii 122 (156)
....++++..+++.+|.+|.|.++|++.+.+.++.. ....++
T Consensus 118 ~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i 160 (426)
T PF13520_consen 118 QFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLI 160 (426)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhhe
Confidence 145667778899999999999999999999999993 443333
No 15
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.77 E-value=1.3e-07 Score=82.62 Aligned_cols=96 Identities=14% Similarity=0.023 Sum_probs=73.5
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+||.+||++||...+.+.+ +.++.+.....|...+++.... | ..
T Consensus 70 aGG~y~~~~~~~g~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~--~-------------~~ 124 (445)
T PRK10644 70 PGGSYAYARRCFGPFLGYQTNVLYWLACWI----------GNIAMVVIGVGYLSYFFPILKD--P-------------LV 124 (445)
T ss_pred CCChhHHHHHHcCchHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhcccCC--c-------------HH
Confidence 699999999999999999999999999988 6666666666777666542110 1 01
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFT 121 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fi 121 (156)
....+++++.+++.+|.+|+|..+++|++.+.++......+
T Consensus 125 ~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i~l~~~ 165 (445)
T PRK10644 125 LTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGI 165 (445)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 13455667778999999999999999999998886544433
No 16
>PRK10746 putative transport protein YifK; Provisional
Probab=98.76 E-value=1.3e-07 Score=83.43 Aligned_cols=91 Identities=16% Similarity=0.065 Sum_probs=74.4
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+||.+||++||+..+.|+. ..++...+.+.|++.++++ .|.
T Consensus 73 sGg~~~y~~~~~g~~~Gf~~gw~~~~~~~~----------~~~~~~~a~~~~l~~~~p~----~~~-------------- 124 (461)
T PRK10746 73 TGSFAVYAHRYMSPFFGYLTAWSYWFMWMA----------VGISEITAIGVYVQFWFPE----MAQ-------------- 124 (461)
T ss_pred CCCHHHHHHHHhCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHccCC----Cch--------------
Confidence 699999999999999999999999999988 6666667788888776642 221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNF 120 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~f 120 (156)
..++.++..+++.+|++|+|..++++.+.+.+|......
T Consensus 125 -~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki~~i~~ 163 (461)
T PRK10746 125 -WIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIV 163 (461)
T ss_pred -HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677888999999999999999999988665533
No 17
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.75 E-value=1.3e-07 Score=83.47 Aligned_cols=99 Identities=15% Similarity=0.087 Sum_probs=76.5
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+|+.+||++||...+.+.+ +.++.+.....|+..+++....+.+ ..
T Consensus 72 sGG~y~y~~~~~G~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~~l~~~~p~~~~~~~-------------~~ 128 (473)
T TIGR00905 72 DGGIYAYAREGFGPYIGFMSGWGYWLSAWI----------GNVAYAVLLFSALGYFFPLFGSGNP-------------VP 128 (473)
T ss_pred CCChhhhHHhHcccccHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhhcCCCc-------------HH
Confidence 599999999999999999999999999888 7677777777888877752111101 01
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
....+.++.++++.+|.+|+|.++|++.+.+.++......++
T Consensus 129 ~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l~~l~~~i 170 (473)
T TIGR00905 129 SILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFI 170 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134566677788999999999999999999998876554433
No 18
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.73 E-value=1.6e-07 Score=80.10 Aligned_cols=97 Identities=7% Similarity=-0.016 Sum_probs=79.6
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcc-cchhHhhhhccccccCCc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI-SNFTIATVGELHEDLLGK 79 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~-~~~p~~~~~~~~~~~~~~ 79 (156)
+||.|+|+++.+||..||++||.+.+++.. ..++.+.+++++++++++... .+.|
T Consensus 58 ~~~~~~~~~~~~G~~~g~~~~~~~~~~~~~----------~~~ay~~~~~~~l~~~~~~~~~~~~~-------------- 113 (381)
T TIGR00837 58 GASFNTIAKDLLGKTGNIIAGLSLLFVLYI----------LTYAYISGGGSILSRLIGEYFGFPWS-------------- 113 (381)
T ss_pred CCCHHHHHHHHhCHHHHHHHHHHHHHHHHH----------HHHHHHHccHHHHHHHHHHhcCCCcc--------------
Confidence 478999999999999999999999999888 888888899999988885321 1111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 80 YPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 80 ~~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
....+.+++++++.++.+|.|+.+|+|.+.+..+......++
T Consensus 114 -~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 114 -ARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred -HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 134566777888999999999999999999999888766655
No 19
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.73 E-value=2.2e-07 Score=82.00 Aligned_cols=92 Identities=11% Similarity=0.006 Sum_probs=75.0
Q ss_pred CcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcch
Q psy4780 2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYP 81 (156)
Q Consensus 2 GsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~~ 81 (156)
||.|.|+++.+||.+||++||...+.|.+ ..++.+.+.+.|++.+++. .+ .
T Consensus 84 ~~~~~ya~~~~g~~~gf~~gW~~~~~~~~----------~~~a~~~a~~~~~~~~~p~----~~---------------~ 134 (469)
T PRK11049 84 KSFSDFASDLLGPWAGYFTGWTYWFCWVV----------TGIADVVAITAYAQFWFPD----LS---------------D 134 (469)
T ss_pred CcHHHHHHHHhCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCC----Cc---------------H
Confidence 67889999999999999999999999988 7677777888888766542 11 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 82 DFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 82 d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
...+.+++.+++.+|++|+|..+++|.+.+.+|......++
T Consensus 135 ~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~kl~~l~~~i 175 (469)
T PRK11049 135 WVASLAVVLLLLSLNLATVKMFGEMEFWFAMIKIVAIVALI 175 (469)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24456667788999999999999999999999877666555
No 20
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.72 E-value=1.7e-07 Score=81.90 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=76.3
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+||.+||++||...+.|+. ..++.+.+.+.|++.++++ .|.
T Consensus 75 ~Gg~~~~~~~~~g~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~~l~~~~~~----~~~-------------- 126 (452)
T TIGR01773 75 TGSFSTYADDAIGRWAGFTIGWLYWWFWVL----------VIPLEAIAAAGILQYWFPD----IPL-------------- 126 (452)
T ss_pred CCCHHHHHHHHhCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCc----CcH--------------
Confidence 599999999999999999999999999999 8888888888898877642 221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAIS 118 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~ 118 (156)
+..+.++.++++.+|.+|+|..+++|.+.+++|....
T Consensus 127 -~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~l 163 (452)
T TIGR01773 127 -WLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAI 163 (452)
T ss_pred -HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 4567777888899999999999999999998887654
No 21
>PRK15049 L-asparagine permease; Provisional
Probab=98.72 E-value=2.3e-07 Score=82.84 Aligned_cols=94 Identities=16% Similarity=0.031 Sum_probs=70.0
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+||.+||++||...+.|.. ..++...+.+.|...+ +.. +..|
T Consensus 91 aGg~y~y~~~~~G~~~gf~~GW~~~l~~~~----------~~~~~~~a~~~~~~~~-~~~-~~~~--------------- 143 (499)
T PRK15049 91 SGSFVSYAREFLGEKAAYVAGWMYFINWAM----------TGIVDITAVALYMHYW-GAF-GGVP--------------- 143 (499)
T ss_pred CCCHHHHHHHHhCcHhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh-ccC-CCCc---------------
Confidence 699999999999999999999999999987 5444444445555422 110 1111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFT 121 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fi 121 (156)
.+.++.++.++++.+|++|+|.++++|.+.+++|......+
T Consensus 144 ~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~~l~~~ 184 (499)
T PRK15049 144 QWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTF 184 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13456777788999999999999999999999886554443
No 22
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.71 E-value=1.5e-07 Score=82.97 Aligned_cols=109 Identities=14% Similarity=0.075 Sum_probs=77.9
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+||.+||++||..++++.. ..++.+.+++.++..++++... ... ..++..+.....
T Consensus 77 aGG~Y~~~~~~~g~~~gf~~gW~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~ 143 (475)
T TIGR03428 77 SGAIYQWSRRMGGEVIGWFAGWFMIIAQIV----------TAAAAAIALQVVLPNIWSGFQI-IGE--DPTLTSPSGAAN 143 (475)
T ss_pred CCCHHHHHHHHcCccccHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhhhh-ccc--CccccCCCchHH
Confidence 699999999999999999999999999998 8888888888887666532110 000 000000000012
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
....+.++..+++.+|++|+|.++++|.+.+.++......++
T Consensus 144 ~~~~~~~~~~~~~~in~~g~k~~~~i~~~~~~~~i~~l~~ii 185 (475)
T TIGR03428 144 AVLLGSVLLVLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVI 185 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777889999999999999999999988876555444
No 23
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.69 E-value=2.8e-07 Score=81.25 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=71.3
Q ss_pred CcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcch
Q psy4780 2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYP 81 (156)
Q Consensus 2 GsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~~ 81 (156)
||.|.|+++.+||.+||++||...+.+.+ +..+.+....+|++.+++......+ ...
T Consensus 67 GG~y~y~~~~fG~~~gf~~gw~~w~~~~~----------~~~~~~~~~~~~~~~~~p~~~~~~~-------------~~~ 123 (468)
T TIGR03810 67 GGVYSYAKAGFGPFMGFISAWGYWLSAWL----------GNVAYATLLFSTLGYFFPIFGGGNN-------------PPS 123 (468)
T ss_pred CChhhhHHhHcCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcccccCCCc-------------HHH
Confidence 59999999999999999999999999988 5555555556666666542110000 001
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 82 DFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 82 d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
...+.++..+++.+|.+|+|.++++|.+.+++|......++
T Consensus 124 ~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~l~~~i 164 (468)
T TIGR03810 124 IIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVPLFVFI 164 (468)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455556678999999999999999999999976544443
No 24
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.64 E-value=4.1e-07 Score=79.41 Aligned_cols=95 Identities=17% Similarity=0.107 Sum_probs=73.1
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHH-HHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIIL-EHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGK 79 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liL-ey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~ 79 (156)
+||.|.|+++.+||.+||++||...+ .+.. +.+..+.+.+.|++.+.+.. +.
T Consensus 73 ~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~----------~~a~~a~~~~~y~~~~~~~~----~~------------- 125 (445)
T PRK11357 73 NGADYVYLKNAGSRPLAFLSGWASFWANDAP----------SLSIMALAIVSNLGFLTPID----PL------------- 125 (445)
T ss_pred CCCceeeHHHhcCChhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCCc----hH-------------
Confidence 69999999999999999999998554 4455 66778888888987654310 10
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 80 YPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 80 ~~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
.....+.++..+++.+|.+|+|.++|++.+.+++|......++
T Consensus 126 ~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~~~~~l~~~i 168 (445)
T PRK11357 126 LGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVI 168 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1145667777888999999999999999999999876544333
No 25
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.61 E-value=5.8e-07 Score=79.03 Aligned_cols=89 Identities=12% Similarity=0.013 Sum_probs=70.0
Q ss_pred CcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcch
Q psy4780 2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYP 81 (156)
Q Consensus 2 GsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~~ 81 (156)
|+.|.|+++.+||.+||++||...++|+. ..++.+.+.+.|++.+.+ +.+.
T Consensus 68 G~~~~~~~~~~g~~~gf~~gw~~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~~--------------- 118 (478)
T TIGR00913 68 GSFATYASRFVDPAFGFAVGWNYWLQWLI----------VLPLELVTASMTIQYWTD----KVNP--------------- 118 (478)
T ss_pred CCHHHHHHHHcCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHcCC----CCCH---------------
Confidence 45668999999999999999999999999 888888888888875542 1111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy4780 82 DFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISN 119 (156)
Q Consensus 82 d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~ 119 (156)
..+..++..+++.+|++|+|.+++++.+.+.+|.....
T Consensus 119 ~~~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l~ 156 (478)
T TIGR00913 119 AVWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAII 156 (478)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 23334455678899999999999999999988765443
No 26
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.60 E-value=4.5e-07 Score=78.12 Aligned_cols=101 Identities=21% Similarity=0.183 Sum_probs=84.7
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++++|+.+||.+||...++|.+ ..++.+.....++..+++... .... + ...
T Consensus 75 ~GG~y~~~~~~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~--------~--~~~ 133 (466)
T COG0531 75 AGGAYAYAKRALGPRLGFLAGWLYLLAYVI----------ALAAIAIGAASYLSYLFPGPG-LLSI--------G--PLL 133 (466)
T ss_pred CCCeeeehhhhcCcchHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCcch-hhcC--------C--chH
Confidence 699999999999999999999999999999 999999999999999887522 0000 0 012
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
....+.++..+++.+|.+|+|.+++.+.+.++++..+...+.
T Consensus 134 ~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~ 175 (466)
T COG0531 134 IILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFI 175 (466)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888999999999999999999999999999887766
No 27
>PRK10836 lysine transporter; Provisional
Probab=98.56 E-value=7.8e-07 Score=78.89 Aligned_cols=93 Identities=17% Similarity=0.000 Sum_probs=67.3
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+||.+||++||+..++|.. ..+..+.+...++..+++ +.|
T Consensus 79 sGg~y~y~~~~~g~~~gf~~Gw~~~~~~~~----------~~a~~~~a~~~~~~~~~~----~~~--------------- 129 (489)
T PRK10836 79 SGSFATYGQNYVEEGFGFALGWNYWYNWAV----------TIAVDLVAAQLVMSWWFP----DTP--------------- 129 (489)
T ss_pred CCCHHHHHHHHcChHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhcCC----CCc---------------
Confidence 699999999999999999999999998887 544333233333333222 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
...++.+...+++.+|++|+|..+++|.+.+++|......++
T Consensus 130 ~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki~~~~~~i 171 (489)
T PRK10836 130 GWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFI 171 (489)
T ss_pred hHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHH
Confidence 123455666778899999999999999999999886654433
No 28
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.43 E-value=4e-06 Score=74.42 Aligned_cols=98 Identities=15% Similarity=0.077 Sum_probs=72.1
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHH-HHhhhhhhHhhhhHHHHHHHHHHHHHHHH-HhcCcccchhHhhhhccccccCC
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIIL-EHMIGKHMVCKHMIGAASVARAWSGYVDS-LCGGAISNFTIATVGELHEDLLG 78 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liL-ey~i~~~~~~~~~~~~A~va~~~s~yl~~-l~~~~~~~~p~~~~~~~~~~~~~ 78 (156)
+||.|.|+++.+|+.+||+.||...+ -+.. ..+..+..++.|+.+ ++++. ..|.
T Consensus 107 sGG~y~~~~~~~g~~~gf~~gw~~~~~~~~~----------~~a~~a~~~~~y~~~~~~~~~--~~~~------------ 162 (501)
T TIGR00911 107 SGGEYNYILEVFGPLLAFLRLWIELLVIRPG----------SQAVNALNFAIYILTPVFPDC--EVPE------------ 162 (501)
T ss_pred CCchhhhHHhHhCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhcCCC--CCch------------
Confidence 59999999999999999999997654 3334 566777778888643 34321 1111
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 79 KYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 79 ~~~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
......+.+++.+++.+|.+|+|.++|++.+.+.++......++
T Consensus 163 ~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~i 206 (501)
T TIGR00911 163 WAIRLVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLII 206 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 01235667778889999999999999999999999987655443
No 29
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.40 E-value=5.7e-06 Score=73.82 Aligned_cols=96 Identities=15% Similarity=0.046 Sum_probs=86.3
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||=-.|+++.+||.+||++||+-.+++++ .+.+-..+.+.|++.++++ .|.
T Consensus 76 ~gSF~~~a~~~lG~~Agf~tgW~YW~~wv~----------v~~ae~tAi~~y~~~WfP~----vP~-------------- 127 (462)
T COG1113 76 SGSFSDYARKYLGPWAGFLTGWTYWFFWVL----------VGIAELTAIGIYLQFWFPD----VPQ-------------- 127 (462)
T ss_pred CCcHHHHHHHHhcchHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCC----CcH--------------
Confidence 477889999999999999999999999999 8888899999999999964 353
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVG 126 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg 126 (156)
+.++....++++.+|..++|.-...+..++++|...+.-++ .+|
T Consensus 128 -Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi~~I-v~G 171 (462)
T COG1113 128 -WVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFI-VVG 171 (462)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 67888899999999999999999999999999999888777 555
No 30
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.32 E-value=5.8e-06 Score=72.88 Aligned_cols=101 Identities=11% Similarity=-0.027 Sum_probs=74.0
Q ss_pred CCcchhHHHHHhh----HHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhcccccc
Q psy4780 1 MGENVVYTYVSVG----EFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDL 76 (156)
Q Consensus 1 aGsaY~Y~y~~~G----e~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~ 76 (156)
+||.|.|+++.+| +.+||++||...+.+.. ..++.+.+.+.|+.++.....+. + ++.++
T Consensus 77 ~Gg~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~-~-----~~~~~- 139 (482)
T TIGR00907 77 SGGQYFWSAKLAPPRQMPFASWMTGWFNLAGQVA----------GTASTDLSVAQLILGIVSLTTPG-R-----EYIPT- 139 (482)
T ss_pred CccHHHHHHHhcccccccceeHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhcCCC-C-----Ccccc-
Confidence 6999999999987 57799999999999999 88888999999988765321111 0 00000
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy4780 77 LGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISN 119 (156)
Q Consensus 77 ~~~~~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~ 119 (156)
.......+.++..+++.+|.+|+|..++++.+.++++.....
T Consensus 140 -~~~~~~i~~~~~~~~~~in~~g~k~~~~~~~~~~~~~i~~~~ 181 (482)
T TIGR00907 140 -RWHIFGIMIGIHLIHALINSLPTKWLPRITSSAAYWSLLGFL 181 (482)
T ss_pred -CchhhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 011123445567788999999999999999998887765554
No 31
>KOG1287|consensus
Probab=98.28 E-value=9.1e-06 Score=73.01 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=84.6
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHH-HHHHhcCcccchhHhhhhccccccCCc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGY-VDSLCGGAISNFTIATVGELHEDLLGK 79 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~y-l~~l~~~~~~~~p~~~~~~~~~~~~~~ 79 (156)
+|+-|.|..++||+++||+-+|.-.+--.. .+.|..+..++.| ++.+++. ...|..
T Consensus 77 sGgd~ayi~~afg~~~aF~~~wvs~l~~~p---------~~~Ai~altF~~Y~l~p~fp~--c~~p~~------------ 133 (479)
T KOG1287|consen 77 SGGDYAYISEAFGPFPAFLFLWVSLLIIVP---------TSAAIIALTFATYLLKPFFPL--CDVPRV------------ 133 (479)
T ss_pred CCcchhhHHHHhccchhHHHHHHHHHHHhh---------hHHHHHHHHHHHHhhcccCCC--CCCchH------------
Confidence 599999999999999999999987664444 1459999999999 7777762 222321
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q psy4780 80 YPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGE 127 (156)
Q Consensus 80 ~~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg~ 127 (156)
.-.+.+...+.+++.+|+.++|-.+|++.+.+..|..+...++ ..|.
T Consensus 134 ~~~lla~~~l~~lt~~n~~~V~~a~~vq~~ft~~Kl~al~lIi-i~G~ 180 (479)
T KOG1287|consen 134 ASKLLAAALLVLLTLINSFSVKWATRVQIVFTIAKLLALLLII-ITGL 180 (479)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-Hhch
Confidence 1257888889999999999999999999999999999999988 7674
No 32
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.27 E-value=8.2e-06 Score=72.53 Aligned_cols=100 Identities=14% Similarity=0.146 Sum_probs=63.6
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHH-HHHHHHHHHHHHhcCccc-chhHhhhhccccccCC
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAAS-VARAWSGYVDSLCGGAIS-NFTIATVGELHEDLLG 78 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~-va~~~s~yl~~l~~~~~~-~~p~~~~~~~~~~~~~ 78 (156)
+||.|.|+++.+||.+||++||....+++. ..++ .+..+......+++.... .++. . +.+ ..
T Consensus 69 aGG~Y~w~~~~~G~~~gf~~~w~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~---~~ 132 (496)
T PRK15238 69 KGGIYSWMNKSVGPKFAFIGTFMWFASYII----------WMVSTASKIWIPFSTFIFGKDTTQTWHF--L-GLN---ST 132 (496)
T ss_pred CCcHHHHHHHHcCchHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHcCcchhhhhhh--h-ccc---ch
Confidence 599999999999999999999998888887 3222 222233332223332110 0000 0 000 01
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy4780 79 KYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGA 116 (156)
Q Consensus 79 ~~~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~ 116 (156)
......+++...+++.+|.+|+|.++|++++.+.++..
T Consensus 133 ~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~~~~~~~~~ 170 (496)
T PRK15238 133 QVVGILAVIWMILVTFVASKGINKIAKVTSIGGIAVML 170 (496)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 12235566666789999999999999999987766653
No 33
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.16 E-value=1.4e-06 Score=76.63 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=77.7
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+|+.+||.+||...++|+. ..+..+.+.+.+++.+-. .++.|..+ ..
T Consensus 59 ~Gg~y~y~~~~lg~~~Gf~~gw~y~~~~~~----------~~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~ 116 (478)
T PF00324_consen 59 AGGFYAYASRGLGPALGFAAGWAYWLSYIA----------AIAAEATAAGSFLQFWGY--FPGLPSTW----------VW 116 (478)
T ss_pred ccchhhhhhhccCCcCCceeeHHHHHHHHH----------HHHhhhhhhhhhhccccc--cccccccc----------cc
Confidence 699999999999999999999999999999 888888777777665511 12222100 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
.+.++.++.++++.+|.+|+|.+++++.+.+.++......++
T Consensus 117 ~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 117 GILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred cchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhh
Confidence 125577888889999999999999999999999887766555
No 34
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.11 E-value=3.7e-05 Score=67.81 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=58.8
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++++||.+||+.||...+++++..|..+.. ++++.+ |...... ..+..+ .+ ...
T Consensus 61 ~GG~y~~~~~a~G~~~gf~~gw~~w~~~~~~~p~~~~~----~~~~~~---~~~~~~~-~~~~~~--------~~--~~~ 122 (474)
T TIGR03813 61 KGGVFRWVGEAFGARWGFLAIFMLWAQVTIWFPTVLTF----GAVSLA---FIGPEAT-VDESLA--------GN--KLY 122 (474)
T ss_pred CCCceeeHhhhcChhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HhcCccc-cCcccc--------cc--cHH
Confidence 59999999999999999999999999998744443321 111111 2111100 000010 00 001
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCG 114 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~ 114 (156)
.-..+.++..+++.+|.+|+|.+++++++.+.++
T Consensus 123 ~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~ 156 (474)
T TIGR03813 123 VLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVG 156 (474)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 1123444456778999999999999998765543
No 35
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.96 E-value=0.00011 Score=65.89 Aligned_cols=95 Identities=14% Similarity=0.027 Sum_probs=58.9
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++++||.+||+++|...++..++.|.+.. ...+...|. ++. +.++. + ..+
T Consensus 65 ~GG~y~wv~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~-------~~~~~~~y~---~~~--~~~~~--------~--~~~ 122 (507)
T TIGR00910 65 EGGIFAWVSNTLGERFGFAAIFFGWFQIAIGFIPMIY-------FILGALSYI---LKF--PALNE--------D--PII 122 (507)
T ss_pred CCCeeeehhhccCccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH---hcC--chhcc--------C--cHH
Confidence 5999999999999999999999988888762222111 111222333 211 11110 0 001
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAI 117 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I 117 (156)
......++..+++.+|.+|+|.+++++++..+++..+
T Consensus 123 ~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~~~i 159 (507)
T TIGR00910 123 KFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGILI 159 (507)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 1223344556788999999999999998866555444
No 36
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=97.83 E-value=0.0003 Score=59.65 Aligned_cols=87 Identities=8% Similarity=0.025 Sum_probs=69.8
Q ss_pred cchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcchh
Q psy4780 3 ENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPD 82 (156)
Q Consensus 3 saY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~~d 82 (156)
+-|.|.++.+|+..|++.+|..++-... .++...|..+.+++.... ++.|. .
T Consensus 65 ~~~~~~~~~~Gk~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l---~~tp~---------------~ 116 (359)
T TIGR00912 65 NFSEILSKYLGKILGRLLSILFILYFFL----------IAAYLIRIFADFIKTYLL---PRTPI---------------I 116 (359)
T ss_pred CHHHHHHHHhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhc---CCCCH---------------H
Confidence 4689999999999999999988876666 777888988888876542 22232 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy4780 83 FLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAI 117 (156)
Q Consensus 83 ~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I 117 (156)
..+..+.+++.+++..|+|..+|++.+...+....
T Consensus 117 ~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~ 151 (359)
T TIGR00912 117 VIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLIL 151 (359)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 55677778888999999999999999998876655
No 37
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0049 Score=56.32 Aligned_cols=94 Identities=16% Similarity=0.006 Sum_probs=75.4
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||=.+|+.+-.+|-+||-+||+-.+.|.+ ..++--.+-+..++..++.. .|
T Consensus 108 sGsF~~ya~rfvdpa~GFa~gWnYw~~w~v----------~~~~El~aa~~vi~yW~p~~---v~--------------- 159 (541)
T COG0833 108 SGSFSTYATRFVDPAFGFALGWNYWLNWAV----------TLPLELTAASLVIQYWFPDT---VP--------------- 159 (541)
T ss_pred CCchhhhhhhhcCchHHHHHHHHHHHHHHH----------HhhHHHHHHHHhhhhhcCCC---CC---------------
Confidence 477889999999999999999999999999 76665555566666665432 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
++.|..++..++..+|..|+|.-+..++.++.+|+....-++
T Consensus 160 ~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fi 201 (541)
T COG0833 160 PWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFI 201 (541)
T ss_pred hHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHH
Confidence 367788888889999999999999999999999986554444
No 38
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=96.59 E-value=0.039 Score=48.53 Aligned_cols=97 Identities=8% Similarity=-0.095 Sum_probs=71.9
Q ss_pred CcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcc-cchhHhhhhccccccCCcc
Q psy4780 2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI-SNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 2 GsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~-~~~p~~~~~~~~~~~~~~~ 80 (156)
.+-++|+++.+|+.+|.+.++...+-... ...+.+++.++.+++++.+.. .+.|.
T Consensus 66 ~~i~~~~~~~fGk~~G~ii~~lY~~~~~~----------i~~aY~~~~~~~~~~fl~~~~~~~~p~-------------- 121 (397)
T TIGR00814 66 EDITEVVEEHFGKNWGILITLLYFFAIYP----------ILLIYSVAITNDSASFLVNQLGTAPPL-------------- 121 (397)
T ss_pred CCHHHHHHHHcCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhcCCCCcH--------------
Confidence 34578999999999999999999998888 767777777777777664311 11111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
..+.++++++++.+++..|.|...|+|.+...........+.
T Consensus 122 ~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~ 163 (397)
T TIGR00814 122 RGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLS 163 (397)
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124566777777899999999999999999977766555444
No 39
>PHA02764 hypothetical protein; Provisional
Probab=96.37 E-value=0.002 Score=56.00 Aligned_cols=35 Identities=11% Similarity=0.286 Sum_probs=32.0
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhH
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMV 35 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~ 35 (156)
+||.|.|.++++|+.+||+.||.+.+++..|.|.+
T Consensus 76 AGGdYVYISRAFGP~~GFLvG~a~WLtl~~G~Pal 110 (399)
T PHA02764 76 NGGDYAYIRTAFSSKFYTIFGISLWLTYVLSQPIL 110 (399)
T ss_pred CCceEEEhHHhhCccHHHHHHHHHHHHHHhhcchh
Confidence 69999999999999999999999999999955544
No 40
>KOG1289|consensus
Probab=95.24 E-value=0.2 Score=46.05 Aligned_cols=100 Identities=16% Similarity=0.069 Sum_probs=73.9
Q ss_pred CCcchhHHHHH----hhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhcccccc
Q psy4780 1 MGENVVYTYVS----VGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDL 76 (156)
Q Consensus 1 aGsaY~Y~y~~----~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~ 76 (156)
+||-|-.+.+. +|++.+|++||...+.+.. ..|++..+.++-+.....-..+++..
T Consensus 113 sGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~----------~~aSi~~S~A~~i~~~v~l~np~y~~---------- 172 (550)
T KOG1289|consen 113 SGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQAT----------GVASITYSLAQLILGAVSLTNPNYEP---------- 172 (550)
T ss_pred CCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHh----------hchhhhHHHHHHHHHHHhhcCCCCcc----------
Confidence 46777766655 5778899999999999999 88888888888777776543343321
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy4780 77 LGKYPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNF 120 (156)
Q Consensus 77 ~~~~~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~f 120 (156)
...+.......+..+...+|+...|--+|+|.+-+..+......
T Consensus 173 ~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i 216 (550)
T KOG1289|consen 173 TNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVI 216 (550)
T ss_pred cceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 11223455667778889999999999999999988777655443
No 41
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=94.13 E-value=0.84 Score=38.20 Aligned_cols=88 Identities=15% Similarity=0.021 Sum_probs=69.0
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcchhHH
Q psy4780 5 VVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFL 84 (156)
Q Consensus 5 Y~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~~d~~ 84 (156)
+.|..+.+|+..|.+.+-...+-++. ..+.+.|.++..++...- |+.|. ...
T Consensus 65 ~~~~~~~~Gk~lg~ii~~~~~l~~l~----------~~~~~lr~~~~~i~~~~l---p~TP~---------------~~i 116 (320)
T PF03845_consen 65 VEISEKLFGKWLGKIINLLYILYFLL----------ISALVLREFSEFIKTYLL---PETPI---------------WVI 116 (320)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhc---CcCCH---------------HHH
Confidence 57889999999999999999999999 999999999998887652 34443 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy4780 85 AFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNF 120 (156)
Q Consensus 85 A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~f 120 (156)
...+.+++.+....|.+.-+|.+.+.-.+-....-+
T Consensus 117 ~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~ 152 (320)
T PF03845_consen 117 ILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLL 152 (320)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888999999999999777655554444333
No 42
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=93.25 E-value=1.4 Score=38.76 Aligned_cols=105 Identities=12% Similarity=-0.046 Sum_probs=69.0
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+|+.|.|-.+..|+.+|++.+|.+.+-.-- . --+--+|+++-..+ +..+++....+ ..
T Consensus 53 ~gG~~~~l~~~~g~~f~~lf~~~~~l~iGP---~--~aiPRtaa~s~e~~--i~p~~~~~~~~---------------~~ 110 (378)
T TIGR00796 53 VGGGYDSLSARIGKVFGILFTVILYLTIGP---L--FAIPRTATVSFEMG--IAPLLHSPTSL---------------LA 110 (378)
T ss_pred cCCCHHHHHHHhChHHHHHHHHHHHHHHHh---c--hhhhHHHHHHHHHH--HHhccCcccch---------------HH
Confidence 478899999999999999999998876654 0 00001344554444 33344321000 01
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGEL 128 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg~~ 128 (156)
.-...+++..+.-.++.++.|...++.+++|-.+......++ ..|..
T Consensus 111 l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~li-i~g~~ 157 (378)
T TIGR00796 111 LFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALI-IKALL 157 (378)
T ss_pred HHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHH-HHHHH
Confidence 123445555555668999999999999999999988887777 55543
No 43
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=93.16 E-value=4.3 Score=35.60 Aligned_cols=92 Identities=11% Similarity=0.030 Sum_probs=62.9
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcc-cchhHhhhhccccccCCcchhHH
Q psy4780 6 VYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI-SNFTIATVGELHEDLLGKYPDFL 84 (156)
Q Consensus 6 ~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~-~~~p~~~~~~~~~~~~~~~~d~~ 84 (156)
+-+++.+|+.++++++....+-.-. ...+-..+-++.++++++... .+.+ +...
T Consensus 69 ~~a~~~lG~~g~~~~~~~~~~~~y~----------ll~AYisg~g~~~~~~l~~~~~~~~~---------------~~~~ 123 (394)
T PF03222_consen 69 SMAEKYLGKKGGIVIGISYLFLLYA----------LLVAYISGGGSILSSLLGNQLGTDLS---------------PWLS 123 (394)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHH----------HHHHHHHccHHHHHHHHHHhcCCCCc---------------HHHH
Confidence 3467889999999998876553333 334455555666666665321 1111 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 85 AFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 85 A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
++++.+++..+...|.|...|.|.+++..+......+.
T Consensus 124 ~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~~l~ 161 (394)
T PF03222_consen 124 SLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISFIILV 161 (394)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888899999999999999998877776555
No 44
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=92.15 E-value=1.8 Score=39.51 Aligned_cols=70 Identities=37% Similarity=0.573 Sum_probs=46.2
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccCCCCCCCCcCHHHHHHHHHHHHHhh
Q psy4780 83 FLAFFV--CLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFLAFFVCLGYALLLG 153 (156)
Q Consensus 83 ~~A~li--vlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg~~~~~~l~~ypDF~a~g~i~~~~~~~~ 153 (156)
.++++. ..+++++.......+++..++.++++.....+.....+. +.+.++++||+++.+++++++.+..
T Consensus 106 ~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~-~~~~l~~~~~~~a~~ii~l~~~ln~ 177 (557)
T TIGR00906 106 LWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKL-NYDGLAEYPDFFAVCLILLLAVLLS 177 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc-cCCcccccchHHHHHHHHHHHHHHH
Confidence 444433 456677777788888899999888875544443322222 2233568899999988888877654
No 45
>PRK10483 tryptophan permease; Provisional
Probab=89.90 E-value=12 Score=33.39 Aligned_cols=91 Identities=15% Similarity=0.034 Sum_probs=58.3
Q ss_pred hHHHHHhhHHHHHHHHHHH-HHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcchhHH
Q psy4780 6 VYTYVSVGEFWAFVIGWNI-ILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPDFL 84 (156)
Q Consensus 6 ~Y~y~~~Ge~~afivGW~l-iLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~~d~~ 84 (156)
+-+++.+|+.+..+.+.+. .+-|.+ ..|-+ .+-++-+++.++....+.|. ..-
T Consensus 77 tma~~~LG~~g~~i~~~s~lfl~Y~L----------l~AYi-sg~g~il~~~l~~~~~~i~~---------------~~~ 130 (414)
T PRK10483 77 TITKDLLGKGWNVVNGISIAFVLYIL----------TYAYI-SASGSILHHTFAEMSLNVPA---------------RAA 130 (414)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHHHH----------HHHHH-hCcHHHHHHHHHhcCCCCcH---------------HHH
Confidence 5678899998887665544 345666 43332 23344455555321112221 244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 85 AFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 85 A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
+.++.+++..+...|.|...|+|.++...+.......+
T Consensus 131 ~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~f~~~~ 168 (414)
T PRK10483 131 GFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTF 168 (414)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999998887765554443
No 46
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=88.21 E-value=15 Score=32.57 Aligned_cols=87 Identities=7% Similarity=0.052 Sum_probs=55.8
Q ss_pred hHHHHHhhHHHHHHHHHHHHH-HHhhhhhhHhhhhHHHHHHHHH----HHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 6 VYTYVSVGEFWAFVIGWNIIL-EHMIGKHMVCKHMIGAASVARA----WSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 6 ~Y~y~~~Ge~~afivGW~liL-ey~i~~~~~~~~~~~~A~va~~----~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+-+++.+|+.++++++....+ -|.+ ..+-..+ .+..++++++.. .|
T Consensus 69 ~~a~~~LG~~g~~i~~~~y~fl~y~l-----------l~AYisg~g~il~~~l~~~~~~~---i~--------------- 119 (403)
T PRK15132 69 TLAKRYLGRYGQWLTGFSMMFLMYAL-----------TAAYISGAGELLASSISDWTGIS---MS--------------- 119 (403)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHH-----------HHHHHhCcHHHHHHHHHHhccCC---CC---------------
Confidence 457899999999999887766 4444 2333333 333333333221 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFT 121 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fi 121 (156)
.....+.++++...+.+.|.|...|+|.++...+.......
T Consensus 120 ~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~ 160 (403)
T PRK15132 120 PTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVM 160 (403)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 12445666777777889999999999999887766555443
No 47
>KOG1286|consensus
Probab=84.57 E-value=4.3 Score=37.50 Aligned_cols=115 Identities=25% Similarity=0.327 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhc---cccccCCcchhHHHHHH-
Q psy4780 13 GEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGE---LHEDLLGKYPDFLAFFV- 88 (156)
Q Consensus 13 Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~---~~~~~~~~~~d~~A~li- 88 (156)
|+...--.|-.+++.|++ + .++.-.+.+.-..++-+ +|.. .|. +... ..-+.+++.+
T Consensus 55 G~~l~~~gp~s~iisf~i----------~--g~~~~~~~~~~~E~~~~---~P~~-aGs~~~ya~~---~i~e~~aF~~g 115 (554)
T KOG1286|consen 55 GSALRNGGPPSLLISFII----------A--GIAALLSALCLGEFAVR---FPVS-AGSFYTYAYR---FVGESLAFAIG 115 (554)
T ss_pred cHHHhccCChhHHHHHHH----------H--HHHHHHHHHHHHHHhee---cccc-cccceeeeee---eeCcHHHHHHH
Confidence 444444556788889988 3 34445555555565543 3321 111 1111 1124566555
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc--CCCCCCCCcCHHHHHHHHHHHHHhh
Q psy4780 89 -CLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGEL--HEDLLGKYPDFLAFFVCLGYALLLG 153 (156)
Q Consensus 89 -vlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg~~--~~~~l~~ypDF~a~g~i~~~~~~~~ 153 (156)
..++.++.......+++..+++...+ .+..+.. +.+....+|||+++.+++.+....+
T Consensus 116 Wny~l~y~i~~a~e~~a~s~~~~~w~~-------~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~ 176 (554)
T KOG1286|consen 116 WNYLLEYVIGLAAEARAWSSYLDYWTG-------ASLIGILVDTVNPGGWIPDFLAFILIINLFGVLA 176 (554)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhc-------cccccccccCCCCCccHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999871 3333332 3334688999999999999888765
No 48
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=84.42 E-value=31 Score=31.18 Aligned_cols=91 Identities=10% Similarity=-0.100 Sum_probs=60.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcc--cchhHhhhhccccccCCcchhHH
Q psy4780 7 YTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAI--SNFTIATVGELHEDLLGKYPDFL 84 (156)
Q Consensus 7 Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~--~~~p~~~~~~~~~~~~~~~~d~~ 84 (156)
-+++.+|+.++.+.+-...+-.-. -..+-..+....+++++.+.. ...| ..+.
T Consensus 87 v~~~~lG~~g~~i~~ilYff~ly~----------ll~aY~~~itn~l~sfl~~ql~~~~~~---------------r~l~ 141 (443)
T PRK13629 87 TVEEHFGKTGGVVITFLYFFAICP----------LLWIYGVTITNTFMTFWENQLGFAPLN---------------RGFV 141 (443)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhcCcCCcc---------------HHHH
Confidence 467889999999988776654333 222222334444444432210 0111 1466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 85 AFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 85 A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
++++++++..+...|.|.-.|+|.++...+..+...+.
T Consensus 142 slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~ 179 (443)
T PRK13629 142 ALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLIS 179 (443)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999988887766555
No 49
>PRK09664 tryptophan permease TnaB; Provisional
Probab=78.72 E-value=47 Score=29.68 Aligned_cols=89 Identities=12% Similarity=0.036 Sum_probs=56.3
Q ss_pred hHHHHHhhHHHHHHHHHHH-HHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcC-cccchhHhhhhccccccCCcchhH
Q psy4780 6 VYTYVSVGEFWAFVIGWNI-ILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGG-AISNFTIATVGELHEDLLGKYPDF 83 (156)
Q Consensus 6 ~Y~y~~~Ge~~afivGW~l-iLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~-~~~~~p~~~~~~~~~~~~~~~~d~ 83 (156)
+-+++.+|+.+..+.+.+. .+-|.+ ..|=++ +=++.+++.++. ...+.| ...
T Consensus 75 tma~~~LG~~g~~i~~~~~~fl~Y~L----------l~AYis-ggG~il~~~l~~~~~~~i~---------------~~~ 128 (415)
T PRK09664 75 TITKDLIGNTWNIISGITVAFVLYIL----------TYAYIS-ANGAIISETISMNLGYHAN---------------PRI 128 (415)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHHHH----------HHHHHh-ccHHHHHHHHhhhccCCCc---------------HHH
Confidence 4578999998777666554 356666 433332 233445555532 001112 134
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy4780 84 LAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNF 120 (156)
Q Consensus 84 ~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~f 120 (156)
.+.++.+++..+...|.|.-.|.|.++...+......
T Consensus 129 ~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f~~ 165 (415)
T PRK09664 129 VGICTAIFVASVLWISSLAASRITSLFLGLKIISFVI 165 (415)
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999987665544443
No 50
>KOG2083|consensus
Probab=69.87 E-value=12 Score=35.18 Aligned_cols=98 Identities=16% Similarity=0.022 Sum_probs=75.8
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+|++|.-...++|+-+|=-+|-.-.+...+ +.|....+++.-+..++.... .+ .
T Consensus 94 ~Gg~yflis~slg~efggsigiIy~f~~aV----------a~am~~vgfaEsv~~l~~~~s----~~------------~ 147 (643)
T KOG2083|consen 94 SGGVYFLISRSLGPEFGGSIGIIYAFANAV----------ATAMYVVGFAESVAHLFETES----KE------------M 147 (643)
T ss_pred cCcEEEEEEecccccccchhHHHHHHHHHH----------HHHHhhhhHHHHHHHHHHhcc----HH------------H
Confidence 488888889999988887788777777777 888888899888888886431 11 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYV-DSLCGGAISNFTIAT 124 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i-~tli~~~I~~fii~~ 124 (156)
+|-.+.+.++++..++..|++--++.+.+ +.++-..+.+|++..
T Consensus 148 i~gi~~vt~~ill~i~~ag~~w~~k~q~~ll~il~iai~~f~~gs 192 (643)
T KOG2083|consen 148 IDGIGSVTVLILLAINVAGVEWEAKLQIVLLLILLIAIADFLVGS 192 (643)
T ss_pred hcchhHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 24477788899999999999999999876 455666777777654
No 51
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=64.64 E-value=1e+02 Score=27.22 Aligned_cols=97 Identities=9% Similarity=-0.058 Sum_probs=68.5
Q ss_pred cchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcchh
Q psy4780 3 ENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYPD 82 (156)
Q Consensus 3 saY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~~d 82 (156)
+-++=+++.+|+.++++++-...+.-.. ...+-.++-+.-+++++++....-+ ....
T Consensus 73 ~~~~~~~~~~G~~~~~li~~s~~~~~~~----------~~~aY~~~~g~~l~~~~~~~~~~~~-------------~~r~ 129 (415)
T COG0814 73 SITSLVEDYLGKKGGILIGLSYFFALYG----------LLVAYIVGIGNLLASFLGNQFGLNP-------------LPRK 129 (415)
T ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHH----------HHHHHHhcchhHHHHHHHhhcccCC-------------cchH
Confidence 3455568889999999999888886666 5566666666666666653211100 1124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy4780 83 FLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTI 122 (156)
Q Consensus 83 ~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii 122 (156)
...+++..++..+...|-+...|.+.+....+......+.
T Consensus 130 ~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~ 169 (415)
T COG0814 130 LGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLV 169 (415)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777779999999999999999998888777666
No 52
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=41.81 E-value=1.9e+02 Score=28.61 Aligned_cols=61 Identities=25% Similarity=0.286 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccCCCC-CCCCcCHHHHHHHHHHHHHhh
Q psy4780 90 LGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDL-LGKYPDFLAFFVCLGYALLLG 153 (156)
Q Consensus 90 lilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg~~~~~~-l~~ypDF~a~g~i~~~~~~~~ 153 (156)
+++..++..++..+-+-..+-++++..+.||+- + +.+.++ +.+.-+++.|.+.+.++++.+
T Consensus 428 vFllgVlv~av~~g~~pa~~aailsvl~fNyFF-~--ePryTf~v~d~~y~vTf~vml~vai~t~ 489 (890)
T COG2205 428 LFLLGVLVVAVLTGRWPAVLAALLSVLVFNYFF-T--EPRYTFAVSDPQYLVTFAVMLAVALLTG 489 (890)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHhhee-c--CCceEEEEecCchHHHHHHHHHHHHHHH
Confidence 344455555666677777888888888888865 2 223333 445556788888888887765
No 53
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=25.45 E-value=5e+02 Score=23.36 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=37.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhc
Q psy4780 7 YTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCG 58 (156)
Q Consensus 7 Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~ 58 (156)
.+...+|..-..+.|-...+..+. .+-....+++.|++++++
T Consensus 266 i~~~~~G~~G~~ll~iiv~lACLT----------TaIGL~~a~a~yf~~~~~ 307 (427)
T PF05525_consen 266 IANHLFGSAGQILLGIIVFLACLT----------TAIGLISACAEYFSELFP 307 (427)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhc
Confidence 467789999999999999999999 888888899999999998
No 54
>KOG1288|consensus
Probab=21.69 E-value=54 Score=31.93 Aligned_cols=107 Identities=11% Similarity=-0.015 Sum_probs=59.8
Q ss_pred CcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcch
Q psy4780 2 GENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKYP 81 (156)
Q Consensus 2 GsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~~ 81 (156)
|++|--..+++|+-+|=-+|-...+..+. .+|.-..++. +.+..+.++.-.-...+++-+++....
T Consensus 132 GGaYymISRsLGpEfGGSIGllFf~anV~----------~~am~isG~v---E~il~nfG~~a~g~sg~~~lP~g~ww~- 197 (945)
T KOG1288|consen 132 GGAYYMISRSLGPEFGGSIGLLFFVANVF----------NCAMNISGFV---EPILDNFGKEAQGASGSQFLPDGYWWR- 197 (945)
T ss_pred CceEEEEEcccCcccCCeeeehhhHHHHh----------cchhhhhhhh---HHHHHhcCccccCCcccccCCCCcchh-
Confidence 88999999999999888888888888888 6665555444 444443332111111111111211100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHH
Q psy4780 82 DFLAFFVCLGYALLLGAASVARAWSGYV-DSLCGGAISNFTI 122 (156)
Q Consensus 82 d~~A~livlilt~l~~~Gik~sa~vn~i-~tli~~~I~~fii 122 (156)
-.-+.++..++..+...|...-+|...+ +.++..+...+.+
T Consensus 198 fly~t~vl~l~~~vc~lGsalfAkas~i~f~~is~s~~si~i 239 (945)
T KOG1288|consen 198 FLYTTLVLALCLIVCLLGSALFAKASNILFVVISVSLFSIPI 239 (945)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHHHHHhhhhh
Confidence 1122344555666677788777776554 4555555554444
Done!