Query psy4780
Match_columns 156
No_of_seqs 133 out of 1336
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 17:31:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.1 1.2E-09 4.1E-14 92.2 12.3 101 1-127 70-170 (445)
2 3gia_A Uncharacterized protein 98.9 3.5E-08 1.2E-12 83.3 13.9 100 1-126 69-169 (444)
3 4djk_A Probable glutamate/gamm 98.6 1.5E-07 5.1E-12 80.8 8.4 95 1-117 72-166 (511)
4 2jln_A MHP1; hydantoin, transp 8.4 8.9E+02 0.03 20.3 9.1 29 86-114 147-175 (501)
5 1jb0_X Photosystem I subunit P 5.6 3.1E+02 0.011 15.3 1.6 9 18-26 11-19 (35)
6 3arc_L Photosystem II reaction 5.4 5.1E+02 0.017 14.5 2.7 8 46-53 28-35 (37)
7 2ksf_A Sensor protein KDPD; me 4.2 3.4E+02 0.012 18.2 1.4 51 100-153 46-97 (107)
8 3e98_A GAF domain of unknown f 3.8 2.1E+02 0.0072 22.4 0.0 13 129-141 43-55 (252)
9 2kxa_A Haemagglutinin HA2 chai 3.7 5.3E+02 0.018 13.8 1.6 9 12-20 3-11 (30)
10 2jp3_A FXYD domain-containing 3.5 6.2E+02 0.021 16.1 2.1 15 141-155 26-40 (67)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.08 E-value=1.2e-09 Score=92.17 Aligned_cols=101 Identities=14% Similarity=0.046 Sum_probs=83.2
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+||.+||++||...++|.. ..++.+++++.|++.+++......|
T Consensus 70 ~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 124 (445)
T 3l1l_A 70 PGGSYAYARRCFGPFLGYQTNVLYWLACWI----------GNIAMVVIGVGYLSYFFPILKDPWV--------------- 124 (445)
T ss_dssp TTTHHHHHHHHSCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHTTTTCGGGGSHHH---------------
T ss_pred CCCchhhHHhHcCChHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHCccccccHH---------------
Confidence 589999999999999999999999999999 8899999999998877653211111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVGE 127 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg~ 127 (156)
....+.++.++++.+|.+|+|..+|++.+.+.++......+. ..+.
T Consensus 125 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~-i~~~ 170 (445)
T 3l1l_A 125 LTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIA-VFGW 170 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-HTTS
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 246677888899999999999999999999999887766555 4554
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.88 E-value=3.5e-08 Score=83.31 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=81.5
Q ss_pred CCcchhHHHHHhhHHH-HHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCc
Q psy4780 1 MGENVVYTYVSVGEFW-AFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGK 79 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~-afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~ 79 (156)
+||.|.|+++.+||.+ +..+||...++|.+ ..|..+++++.|++++++...+ |.
T Consensus 69 ~Gg~y~~~~~~~G~~~~~g~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~--~~------------- 123 (444)
T 3gia_A 69 NAGPIAFIHKAIGDNIITGALSILLWMSYVI----------SIALFAKGFAGYFLPLINAPIN--TF------------- 123 (444)
T ss_dssp TTTHHHHHHHHHCSSHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHTTCCCC--HH-------------
T ss_pred CCcHHHhHHHHhCcchHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhCCCCc--hH-------------
Confidence 5899999999999963 44458999999999 9999999999999998864211 11
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q psy4780 80 YPDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAISNFTIATVG 126 (156)
Q Consensus 80 ~~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I~~fii~~vg 126 (156)
.....+.++.++++.+|.+|+|.+++++.+.+.++......++ ..+
T Consensus 124 ~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~i-i~~ 169 (444)
T 3gia_A 124 NIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFI-FAG 169 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 1246678888899999999999999999999999988876655 444
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.57 E-value=1.5e-07 Score=80.76 Aligned_cols=95 Identities=15% Similarity=0.050 Sum_probs=73.1
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHHhcCcccchhHhhhhccccccCCcc
Q psy4780 1 MGENVVYTYVSVGEFWAFVIGWNIILEHMIGKHMVCKHMIGAASVARAWSGYVDSLCGGAISNFTIATVGELHEDLLGKY 80 (156)
Q Consensus 1 aGsaY~Y~y~~~Ge~~afivGW~liLey~i~~~~~~~~~~~~A~va~~~s~yl~~l~~~~~~~~p~~~~~~~~~~~~~~~ 80 (156)
+||.|.|+++.+||.+||++||...++|++ ..++.+.+.+.+++.+++. ++++. ....
T Consensus 72 ~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--p~~~~----------~~~~ 129 (511)
T 4djk_A 72 EGGVFAWVSNTLGPRWGFAAISFGYLQIAI----------GFIPMLYFVLGALSYILKW--PALNE----------DPIT 129 (511)
T ss_dssp --CHHHHHHHHHCHHHHHHHHHHHHHHHHH----------HTHHHHHHHHHHHHTTTTC--GGGTS----------CSSH
T ss_pred CCChhhhHHhhcCchHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhcC--ccccc----------CcHH
Confidence 599999999999999999999999999999 7777777778887655421 22210 0112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy4780 81 PDFLAFFVCLGYALLLGAASVARAWSGYVDSLCGGAI 117 (156)
Q Consensus 81 ~d~~A~livlilt~l~~~Gik~sa~vn~i~tli~~~I 117 (156)
....+.++.++++.+|.+|+|.+++++.+.+.++..+
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~ 166 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILL 166 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 3456777888899999999999999999988876543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=8.37 E-value=8.9e+02 Score=20.29 Aligned_cols=29 Identities=7% Similarity=-0.175 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4780 86 FFVCLGYALLLGAASVARAWSGYVDSLCG 114 (156)
Q Consensus 86 ~livlilt~l~~~Gik~sa~vn~i~tli~ 114 (156)
+++.++...+...|.|.-.+.+.+.+.+-
T Consensus 147 ~i~~~l~~~~~~~G~~~i~~~~~~~~p~~ 175 (501)
T 2jln_A 147 VIFGAIQVVTTFYGITFIRWMNVFASPVL 175 (501)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 34456666777889999989888866443
No 5
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=5.56 E-value=3.1e+02 Score=15.27 Aligned_cols=9 Identities=33% Similarity=0.851 Sum_probs=5.8
Q ss_pred HHHHHHHHH
Q psy4780 18 FVIGWNIIL 26 (156)
Q Consensus 18 fivGW~liL 26 (156)
|-+||.++|
T Consensus 11 frt~Walll 19 (35)
T 1jb0_X 11 FRTFWAVLL 19 (35)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456787754
No 6
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=5.35 E-value=5.1e+02 Score=14.55 Aligned_cols=8 Identities=38% Similarity=0.546 Sum_probs=4.5
Q ss_pred HHHHHHHH
Q psy4780 46 ARAWSGYV 53 (156)
Q Consensus 46 a~~~s~yl 53 (156)
|.-||+|+
T Consensus 28 avlFssyf 35 (37)
T 3arc_L 28 ALLFSSYF 35 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHhhhhc
Confidence 44566664
No 7
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=4.22 E-value=3.4e+02 Score=18.17 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhccCCCC-CCCCcCHHHHHHHHHHHHHhh
Q psy4780 100 SVARAWSGYVDSLCGGAISNFTIATVGELHEDL-LGKYPDFLAFFVCLGYALLLG 153 (156)
Q Consensus 100 ik~sa~vn~i~tli~~~I~~fii~~vg~~~~~~-l~~ypDF~a~g~i~~~~~~~~ 153 (156)
.+...+-..+-+++.....||+- + ++..++ ..|-.|.+.+.+.++++++++
T Consensus 46 ~~~g~~pa~~aa~ls~l~~nffF-~--~P~~sf~i~~~~~~vt~~v~l~val~~s 97 (107)
T 2ksf_A 46 LFYGRWPSVVATVINVVSFDLFF-I--APRGTLAVSDVQYLLTFAVMLTVGLVIG 97 (107)
T ss_dssp HHHSSCCCSHHHHHHHHHHHHTT-S--CSSCTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHhh-c--CCCccccccCHhHHHHHHHHHHHHHHHH
Confidence 33333335556666666677654 2 222223 345457888888888887765
No 8
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=3.82 E-value=2.1e+02 Score=22.36 Aligned_cols=13 Identities=8% Similarity=0.386 Sum_probs=0.0
Q ss_pred CCCCCCCCcCHHH
Q psy4780 129 HEDLLGKYPDFLA 141 (156)
Q Consensus 129 ~~~~l~~ypDF~a 141 (156)
|++|+.++||.+.
T Consensus 43 ~PdFf~~~~~Ll~ 55 (252)
T 3e98_A 43 HPEFFVEHDELIP 55 (252)
T ss_dssp -------------
T ss_pred CCHHHhhCHHHHH
Confidence 4455566666554
No 9
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=3.70 E-value=5.3e+02 Score=13.77 Aligned_cols=9 Identities=22% Similarity=0.445 Sum_probs=5.2
Q ss_pred hhHHHHHHH
Q psy4780 12 VGEFWAFVI 20 (156)
Q Consensus 12 ~Ge~~afiv 20 (156)
||..+||+-
T Consensus 3 FGAIAGfie 11 (30)
T 2kxa_A 3 FGAIAGFIE 11 (30)
T ss_dssp HHHHHHHHH
T ss_pred chhhhhhhh
Confidence 566666653
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=3.54 E-value=6.2e+02 Score=16.08 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhhcC
Q psy4780 141 AFFVCLGYALLLGKK 155 (156)
Q Consensus 141 a~g~i~~~~~~~~~~ 155 (156)
+..+++-+.+++++|
T Consensus 26 ~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 26 GLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHcCc
Confidence 344444444444543
Done!