Query psy4780
Match_columns 156
No_of_seqs 133 out of 1336
Neff 6.1
Searched_HMMs 13730
Date Fri Aug 16 17:31:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4780.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4780hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0x_ f.23.20.1 (X:) Subunit 7.3 75 0.0055 15.5 1.0 10 17-26 4-13 (29)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 5.3 2.4E+02 0.017 14.5 2.7 8 46-53 28-35 (37)
3 d1uptb_ a.193.1.1 (B:) Golgi a 4.0 1.6E+02 0.011 16.9 1.1 10 23-32 10-19 (58)
4 d2hq4a1 d.342.1.1 (A:1-152) Hy 4.0 1.5E+02 0.011 19.9 1.1 16 2-17 47-62 (152)
5 d2i5nh2 f.23.10.1 (H:1-36) Pho 3.6 2.7E+02 0.019 13.9 1.6 14 16-29 19-32 (36)
6 d1jb0i_ f.23.17.1 (I:) Subunit 3.4 2.4E+02 0.018 14.5 1.4 10 32-41 15-24 (38)
7 d2gfna2 a.121.1.1 (A:81-199) P 3.2 2.5E+02 0.018 17.7 1.6 17 11-27 41-57 (119)
8 d2fug71 d.82.2.2 (7:3-129) NAD 2.9 1.1E+02 0.0077 20.2 -0.6 24 118-141 15-40 (127)
9 d1tifa_ d.15.8.1 (A:) Translat 2.5 70 0.0051 19.3 -1.8 9 32-40 51-59 (76)
10 d1ugpa_ d.149.1.1 (A:) Cobalt- 2.4 3.7E+02 0.027 18.9 2.0 20 39-58 52-73 (203)
No 1
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=7.34 E-value=75 Score=15.54 Aligned_cols=10 Identities=40% Similarity=0.846 Sum_probs=6.6
Q ss_pred HHHHHHHHHH
Q psy4780 17 AFVIGWNIIL 26 (156)
Q Consensus 17 afivGW~liL 26 (156)
+|-++|.++|
T Consensus 4 ~frt~wa~ll 13 (29)
T d1jb0x_ 4 AFRTFWAVLL 13 (29)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3567787765
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.33 E-value=2.4e+02 Score=14.49 Aligned_cols=8 Identities=38% Similarity=0.546 Sum_probs=4.5
Q ss_pred HHHHHHHH
Q psy4780 46 ARAWSGYV 53 (156)
Q Consensus 46 a~~~s~yl 53 (156)
|.-||+|+
T Consensus 28 ~vLFssYf 35 (37)
T d2axtl1 28 ALLFSSYF 35 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44566664
No 3
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.05 E-value=1.6e+02 Score=16.90 Aligned_cols=10 Identities=30% Similarity=0.873 Sum_probs=7.8
Q ss_pred HHHHHHhhhh
Q psy4780 23 NIILEHMIGK 32 (156)
Q Consensus 23 ~liLey~i~~ 32 (156)
|++.||+.|+
T Consensus 10 nvLfeYMmG~ 19 (58)
T d1uptb_ 10 KVLFEYMMGR 19 (58)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHcCc
Confidence 5788999865
No 4
>d2hq4a1 d.342.1.1 (A:1-152) Hypothetical protein PH1570 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.99 E-value=1.5e+02 Score=19.87 Aligned_cols=16 Identities=38% Similarity=0.935 Sum_probs=10.8
Q ss_pred CcchhHHHHHhhHHHH
Q psy4780 2 GENVVYTYVSVGEFWA 17 (156)
Q Consensus 2 GsaY~Y~y~~~Ge~~a 17 (156)
|+.|.|-..+--|+||
T Consensus 47 G~eYvYPFECAKEfWg 62 (152)
T d2hq4a1 47 GREYVYPFECAKEFWN 62 (152)
T ss_dssp CSSCCHHHHHHHHHHT
T ss_pred cccccchHHHhHHhhh
Confidence 5667777777666665
No 5
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=3.56 E-value=2.7e+02 Score=13.91 Aligned_cols=14 Identities=14% Similarity=0.546 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHh
Q psy4780 16 WAFVIGWNIILEHM 29 (156)
Q Consensus 16 ~afivGW~liLey~ 29 (156)
.-|++-|..+|-|+
T Consensus 19 aqwlviwtvvllyl 32 (36)
T d2i5nh2 19 AQWLVIWTVVLLYL 32 (36)
T ss_dssp HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhh
Confidence 35788888887775
No 6
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=3.40 E-value=2.4e+02 Score=14.54 Aligned_cols=10 Identities=30% Similarity=0.285 Sum_probs=7.3
Q ss_pred hhhHhhhhHH
Q psy4780 32 KHMVCKHMIG 41 (156)
Q Consensus 32 ~~~~~~~~~~ 41 (156)
.|+||+.|-+
T Consensus 15 iPvv~wl~p~ 24 (38)
T d1jb0i_ 15 IPVVCWLMPT 24 (38)
T ss_dssp HHHHHTHHHH
T ss_pred HHHHHHHHHH
Confidence 5788887765
No 7
>d2gfna2 a.121.1.1 (A:81-199) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=3.21 E-value=2.5e+02 Score=17.70 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=13.2
Q ss_pred HhhHHHHHHHHHHHHHH
Q psy4780 11 SVGEFWAFVIGWNIILE 27 (156)
Q Consensus 11 ~~Ge~~afivGW~liLe 27 (156)
+=||..+|+.-|--+.-
T Consensus 41 ar~eia~flarwr~vvr 57 (119)
T d2gfna2 41 ARGEIAAFLARWRGVVR 57 (119)
T ss_dssp CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34899999999976653
No 8
>d2fug71 d.82.2.2 (7:3-129) NADH-quinone oxidoreductase subunit 15, Nqo15 {Thermus thermophilus [TaxId: 274]}
Probab=2.86 E-value=1.1e+02 Score=20.23 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=12.9
Q ss_pred HHHHHHHhh--ccCCCCCCCCcCHHH
Q psy4780 118 SNFTIATVG--ELHEDLLGKYPDFLA 141 (156)
Q Consensus 118 ~~fii~~vg--~~~~~~l~~ypDF~a 141 (156)
..|+.|... ..++.-.+++|||+.
T Consensus 15 l~Wm~e~A~~rGv~feKeaDFPDyIY 40 (127)
T d2fug71 15 LSWMREYAQAKGVRFEKEADFPDFIY 40 (127)
T ss_dssp HHHHHHHHHHHTCEEEEEEECHHHHT
T ss_pred HHHHHHHHHhcCCcceecccccHHHH
Confidence 456655432 122222678999873
No 9
>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.52 E-value=70 Score=19.27 Aligned_cols=9 Identities=44% Similarity=0.578 Sum_probs=5.8
Q ss_pred hhhHhhhhH
Q psy4780 32 KHMVCKHMI 40 (156)
Q Consensus 32 ~~~~~~~~~ 40 (156)
+|.||++|-
T Consensus 51 ~PPVcKi~d 59 (76)
T d1tifa_ 51 KPPVCRIMD 59 (76)
T ss_dssp SSCEEEEEC
T ss_pred CCCEEEEEc
Confidence 566777763
No 10
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=2.45 E-value=3.7e+02 Score=18.93 Aligned_cols=20 Identities=30% Similarity=0.655 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHH--HHHHHHhc
Q psy4780 39 MIGAASVARAWS--GYVDSLCG 58 (156)
Q Consensus 39 ~~~~A~va~~~s--~yl~~l~~ 58 (156)
+.++-.|||+|. .|=+.|+.
T Consensus 52 ~~GArVVARAW~Dp~FK~rLL~ 73 (203)
T d1ugpa_ 52 HLGAKVVVKAWTDPEFKKRLLA 73 (203)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHH
Confidence 348889999995 45555554
Done!